Query 027151
Match_columns 227
No_of_seqs 154 out of 392
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3880 Modulator of heat shoc 99.7 5.9E-18 1.3E-22 144.6 4.8 91 94-190 73-170 (176)
2 PF02151 UVR: UvrB/uvrC motif; 98.7 2.2E-08 4.7E-13 65.4 4.6 34 157-190 3-36 (36)
3 COG0556 UvrB Helicase subunit 97.1 0.0013 2.7E-08 66.1 6.6 39 154-192 622-660 (663)
4 TIGR00631 uvrb excinuclease AB 96.6 0.0019 4.2E-08 64.5 4.3 33 156-188 623-655 (655)
5 PRK05298 excinuclease ABC subu 96.6 0.0024 5.2E-08 63.3 4.9 37 155-191 612-648 (652)
6 PRK07883 hypothetical protein; 96.6 0.0022 4.7E-08 62.9 4.4 33 158-190 408-440 (557)
7 PRK00558 uvrC excinuclease ABC 96.6 0.0023 5.1E-08 63.3 4.4 35 157-191 203-237 (598)
8 PRK12306 uvrC excinuclease ABC 96.2 0.0049 1.1E-07 60.5 4.3 32 158-189 194-225 (519)
9 PRK14666 uvrC excinuclease ABC 96.1 0.0059 1.3E-07 62.1 4.4 32 158-189 203-234 (694)
10 PRK14667 uvrC excinuclease ABC 96.1 0.0067 1.4E-07 60.2 4.4 32 158-189 201-232 (567)
11 PRK14671 uvrC excinuclease ABC 96.0 0.007 1.5E-07 60.5 4.4 32 158-189 217-248 (621)
12 PRK14668 uvrC excinuclease ABC 96.0 0.0071 1.5E-07 60.0 4.3 33 157-189 200-232 (577)
13 TIGR00194 uvrC excinuclease AB 96.0 0.0074 1.6E-07 59.8 4.3 32 158-189 196-227 (574)
14 PRK14672 uvrC excinuclease ABC 95.9 0.0081 1.8E-07 61.2 4.4 32 158-189 207-238 (691)
15 PRK14670 uvrC excinuclease ABC 95.9 0.0083 1.8E-07 59.6 4.4 32 158-189 179-210 (574)
16 PRK14669 uvrC excinuclease ABC 95.9 0.0082 1.8E-07 60.2 4.4 32 158-189 205-236 (624)
17 COG0322 UvrC Nuclease subunit 95.5 0.016 3.4E-07 57.9 4.3 58 158-215 204-276 (581)
18 PF04420 CHD5: CHD5-like prote 86.1 1.6 3.4E-05 36.6 5.0 43 154-196 45-87 (161)
19 PF10186 Atg14: UV radiation r 79.8 17 0.00038 31.2 9.1 19 98-117 2-20 (302)
20 PF09862 DUF2089: Protein of u 78.1 1.7 3.7E-05 35.6 2.2 76 98-174 1-79 (113)
21 KOG4825 Component of synaptic 77.2 4 8.7E-05 41.3 4.9 39 154-192 205-243 (666)
22 KOG0412 Golgi transport comple 74.1 16 0.00034 38.5 8.3 61 121-191 100-163 (773)
23 PF04880 NUDE_C: NUDE protein, 70.2 2.9 6.2E-05 36.2 1.8 17 175-191 31-47 (166)
24 PRK11020 hypothetical protein; 69.3 16 0.00034 30.5 5.8 41 154-194 10-50 (118)
25 PF15290 Syntaphilin: Golgi-lo 66.8 25 0.00055 33.4 7.3 54 123-192 72-134 (305)
26 PRK00420 hypothetical protein; 66.7 13 0.00028 30.4 4.8 25 96-120 24-52 (112)
27 PF05605 zf-Di19: Drought indu 65.6 4.7 0.0001 27.8 1.8 12 108-119 31-42 (54)
28 PF10475 DUF2450: Protein of u 61.1 47 0.001 29.9 7.8 31 157-187 126-156 (291)
29 PF06476 DUF1090: Protein of u 61.0 36 0.00078 27.6 6.4 66 122-192 46-113 (115)
30 PF13801 Metal_resist: Heavy-m 55.2 79 0.0017 23.0 8.5 36 157-192 67-104 (125)
31 PF13805 Pil1: Eisosome compon 51.7 64 0.0014 30.1 7.2 31 108-141 116-146 (271)
32 PRK12751 cpxP periplasmic stre 51.3 52 0.0011 28.2 6.2 45 161-206 83-127 (162)
33 PF13838 Clathrin_H_link: Clat 49.0 24 0.00051 26.5 3.3 21 160-180 8-28 (66)
34 PF13717 zinc_ribbon_4: zinc-r 48.6 5.8 0.00013 26.0 -0.0 23 96-118 3-35 (36)
35 PRK00409 recombination and DNA 48.1 1.4E+02 0.003 31.2 9.7 21 206-226 635-655 (782)
36 PF01486 K-box: K-box region; 47.2 1.3E+02 0.0027 23.0 7.2 64 122-192 22-85 (100)
37 PF07743 HSCB_C: HSCB C-termin 47.2 70 0.0015 23.1 5.5 34 154-187 36-69 (78)
38 COG5296 Transcription factor i 46.7 61 0.0013 32.6 6.5 34 158-191 367-400 (521)
39 PF00653 BIR: Inhibitor of Apo 45.7 9.7 0.00021 27.3 0.8 25 68-107 24-48 (70)
40 PF13719 zinc_ribbon_5: zinc-r 42.3 8.2 0.00018 25.2 -0.0 24 96-119 3-36 (37)
41 PF14863 Alkyl_sulf_dimr: Alky 41.1 86 0.0019 26.2 5.8 43 160-202 72-120 (141)
42 PF11365 DUF3166: Protein of u 39.9 30 0.00065 27.7 2.8 46 158-213 3-48 (96)
43 cd00022 BIR Baculoviral inhibi 39.8 16 0.00034 25.6 1.1 25 68-107 22-46 (69)
44 COG3678 CpxP P pilus assembly/ 39.1 1.9E+02 0.0042 24.8 7.7 48 158-206 81-128 (160)
45 PF12510 Smoothelin: Smootheli 38.5 90 0.0019 22.8 4.8 36 152-190 18-53 (54)
46 CHL00095 clpC Clp protease ATP 38.0 68 0.0015 33.2 5.7 36 157-192 418-453 (821)
47 PF07743 HSCB_C: HSCB C-termin 38.0 1.5E+02 0.0033 21.3 7.1 45 155-199 7-51 (78)
48 PF14276 DUF4363: Domain of un 37.9 67 0.0015 25.0 4.5 30 157-186 27-56 (121)
49 PF14723 SSFA2_C: Sperm-specif 37.8 2.2E+02 0.0048 25.4 8.0 64 121-189 114-177 (179)
50 KOG4408 Putative Mg2+ and Co2+ 37.8 8.7 0.00019 37.4 -0.6 20 207-226 66-85 (386)
51 PF07851 TMPIT: TMPIT-like pro 37.1 2E+02 0.0044 27.5 8.3 55 156-211 46-104 (330)
52 PF09969 DUF2203: Uncharacteri 36.8 1.9E+02 0.0041 23.6 7.0 21 117-137 4-24 (120)
53 PF12644 DUF3782: Protein of u 35.9 1.2E+02 0.0025 21.2 5.0 53 157-221 9-64 (64)
54 PF14357 DUF4404: Domain of un 35.5 1.1E+02 0.0024 23.4 5.2 56 124-188 2-59 (85)
55 PRK12750 cpxP periplasmic repr 35.2 2.9E+02 0.0062 23.7 8.4 30 157-187 86-115 (170)
56 KOG4253 Tryptophan-rich basic 34.7 1.3E+02 0.0029 26.6 6.2 41 156-196 51-91 (175)
57 TIGR02444 conserved hypothetic 34.2 2.2E+02 0.0047 23.2 7.0 37 157-193 70-106 (116)
58 PRK01773 hscB co-chaperone Hsc 33.4 1.1E+02 0.0024 26.2 5.4 29 157-185 126-154 (173)
59 PHA00616 hypothetical protein 33.4 29 0.00063 24.3 1.6 26 109-134 2-27 (44)
60 PF04508 Pox_A_type_inc: Viral 33.3 40 0.00087 20.9 2.0 16 178-193 4-19 (23)
61 PF04124 Dor1: Dor1-like famil 33.0 1.9E+02 0.0042 26.6 7.3 38 153-190 101-138 (338)
62 PF11464 Rbsn: Rabenosyn Rab b 32.1 1.5E+02 0.0032 20.7 4.9 36 157-192 4-39 (42)
63 PF13462 Thioredoxin_4: Thiore 32.1 34 0.00073 26.4 2.0 20 108-130 21-40 (162)
64 PF06133 DUF964: Protein of un 31.9 2.2E+02 0.0048 21.3 7.5 74 117-192 2-75 (108)
65 PRK06266 transcription initiat 30.8 36 0.00078 29.2 2.1 45 90-134 112-168 (178)
66 TIGR00606 rad50 rad50. This fa 30.3 1.6E+02 0.0035 32.1 7.2 25 110-134 679-703 (1311)
67 PF10186 Atg14: UV radiation r 29.9 2.7E+02 0.0058 24.0 7.3 16 175-190 91-106 (302)
68 PHA02562 46 endonuclease subun 29.6 3.7E+02 0.0081 25.6 8.8 37 95-134 284-321 (562)
69 PHA02562 46 endonuclease subun 29.4 1.4E+02 0.0031 28.4 6.0 13 108-120 284-296 (562)
70 PRK09841 cryptic autophosphory 29.4 5E+02 0.011 26.6 10.1 49 121-170 276-325 (726)
71 cd07963 Anticodon_Ia_Cys Antic 29.0 84 0.0018 25.3 3.8 30 158-187 112-141 (156)
72 PRK13169 DNA replication intia 28.7 2.9E+02 0.0062 22.5 6.8 31 157-188 23-56 (110)
73 KOG1853 LIS1-interacting prote 27.6 2.3E+02 0.005 27.1 6.8 38 154-191 131-180 (333)
74 TIGR00714 hscB Fe-S protein as 27.3 1.9E+02 0.0042 24.1 5.8 30 157-186 112-141 (157)
75 KOG4069 Uncharacterized conser 27.1 63 0.0014 27.9 2.9 41 100-140 78-119 (154)
76 cd03023 DsbA_Com1_like DsbA fa 27.1 48 0.001 25.0 2.0 18 108-128 14-31 (154)
77 KOG4825 Component of synaptic 27.0 88 0.0019 32.1 4.2 35 158-192 173-207 (666)
78 PRK13848 conjugal transfer pro 26.3 60 0.0013 26.4 2.4 23 156-178 10-34 (98)
79 PF00816 Histone_HNS: H-NS his 26.2 63 0.0014 24.3 2.5 16 158-173 3-18 (93)
80 cd02972 DsbA_family DsbA famil 26.2 40 0.00087 22.9 1.3 13 108-120 6-18 (98)
81 PHA03392 egt ecdysteroid UDP-g 25.9 71 0.0015 31.2 3.4 86 108-216 387-473 (507)
82 PF04216 FdhE: Protein involve 25.9 31 0.00067 31.0 0.9 26 94-119 196-222 (290)
83 PRK00464 nrdR transcriptional 25.6 14 0.00031 31.3 -1.2 13 108-120 28-40 (154)
84 PRK00260 cysS cysteinyl-tRNA s 25.6 88 0.0019 30.2 3.9 30 158-187 418-447 (463)
85 PRK10363 cpxP periplasmic repr 24.8 1.2E+02 0.0027 26.4 4.3 51 162-213 78-129 (166)
86 PRK03578 hscB co-chaperone Hsc 24.0 2.4E+02 0.0051 24.2 5.8 26 158-183 130-156 (176)
87 KOG0739 AAA+-type ATPase [Post 24.0 45 0.00098 32.8 1.6 65 109-173 56-127 (439)
88 cd07595 BAR_RhoGAP_Rich-like T 24.0 3.9E+02 0.0085 24.1 7.5 40 156-196 135-179 (244)
89 smart00238 BIR Baculoviral inh 24.0 43 0.00093 23.6 1.1 25 68-107 24-48 (71)
90 PF09237 GAGA: GAGA factor; I 23.9 33 0.00072 25.2 0.5 21 110-130 26-46 (54)
91 PRK04098 sec-independent trans 23.6 2.1E+02 0.0046 24.8 5.4 29 152-182 50-79 (158)
92 PRK03057 hypothetical protein; 23.5 1.9E+02 0.0041 25.4 5.2 37 154-190 142-178 (180)
93 KOG0457 Histone acetyltransfer 23.3 29 0.00063 34.4 0.2 21 94-114 13-35 (438)
94 PF06273 eIF-4B: Plant specifi 23.2 1.2E+02 0.0025 30.8 4.3 40 156-195 373-416 (492)
95 COG5151 SSL1 RNA polymerase II 23.1 33 0.00072 33.4 0.5 23 98-120 365-400 (421)
96 PF06248 Zw10: Centromere/kine 22.9 6.1E+02 0.013 25.1 9.2 25 163-187 113-137 (593)
97 COG2433 Uncharacterized conser 22.7 4.5E+02 0.0098 27.7 8.4 17 198-214 532-548 (652)
98 PF06936 Selenoprotein_S: Sele 22.2 4.4E+02 0.0096 23.3 7.3 18 108-128 41-58 (190)
99 KOG4080 Mitochondrial ribosoma 22.1 68 0.0015 28.5 2.2 26 95-120 93-118 (176)
100 PRK00294 hscB co-chaperone Hsc 21.9 2.3E+02 0.005 24.3 5.4 31 157-187 96-126 (173)
101 PF10205 KLRAQ: Predicted coil 21.9 1.2E+02 0.0025 24.7 3.3 47 163-215 15-61 (102)
102 PRK10455 periplasmic protein; 21.8 1.7E+02 0.0038 24.8 4.6 30 160-189 82-113 (161)
103 PRK05014 hscB co-chaperone Hsc 21.5 2.6E+02 0.0056 23.7 5.5 33 155-187 123-155 (171)
104 COG5509 Uncharacterized small 21.3 1.3E+02 0.0028 22.9 3.2 18 175-192 32-49 (65)
105 PF13894 zf-C2H2_4: C2H2-type 21.1 33 0.00072 18.4 0.1 17 110-126 2-18 (24)
106 COG4487 Uncharacterized protei 21.0 7.4E+02 0.016 24.9 9.2 89 92-189 9-104 (438)
107 PHA01748 hypothetical protein 20.8 1.9E+02 0.004 20.8 3.9 31 160-190 12-42 (60)
108 COG0215 CysS Cysteinyl-tRNA sy 20.6 1.4E+02 0.003 30.0 4.2 32 157-188 418-449 (464)
109 PRK03636 hypothetical protein; 20.6 2.3E+02 0.0049 24.8 5.1 81 99-189 95-178 (179)
110 COG0675 Transposase and inacti 20.5 65 0.0014 27.4 1.8 29 91-120 305-334 (364)
111 PF05529 Bap31: B-cell recepto 20.4 5.2E+02 0.011 21.7 7.7 14 154-167 159-172 (192)
112 PF12711 Kinesin-relat_1: Kine 20.2 99 0.0021 24.4 2.5 10 179-188 55-64 (86)
No 1
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=99.71 E-value=5.9e-18 Score=144.63 Aligned_cols=91 Identities=25% Similarity=0.291 Sum_probs=77.1
Q ss_pred Cceeeccccccccc-----cccccccHHhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHH--HhhHHhHHHHHHHHH
Q 027151 94 EDILFFFFQLDLAT-----RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEA--QDKALSIIRLRADLQ 166 (227)
Q Consensus 94 e~i~cf~cqldl~t-----RLGCp~CYE~F~~a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a--~~~~~~LeeLr~~Lq 166 (227)
+.+.|+.|+++|.. |+||+.||.+|.+ .|.|.+++|+.+- ..|+||.++.+. .....+|..|++.|+
T Consensus 73 e~l~C~~C~~Tfk~f~~~g~fGCaeCY~tf~~--~i~pi~~rvq~g~----~~H~GK~P~~~~~~i~~~~~I~~L~e~Lq 146 (176)
T COG3880 73 ELLGCHNCGMTFKEFIQSGLFGCAECYKTFES--QISPIITRVQGGY----VEHVGKVPKRIGRKINPKRKIIALKEALQ 146 (176)
T ss_pred HHhcCccccccHHHHHHhcccchHHHHHHHHH--HhhHHHHHhhCCc----eeecCcCcccccccccHHHHHHHHHHHHH
Confidence 36889999998865 9999999999997 9999999999882 347898333222 235568999999999
Q ss_pred HHHhhcchHHHHHHHHHHhhHhhh
Q 027151 167 KAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 167 ~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
++|+.||||+||.|||+|+.|+.+
T Consensus 147 ~~i~~EefEeAA~iRDqIr~Lk~k 170 (176)
T COG3880 147 DLIEREEFEEAAVIRDQIRALKAK 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999865
No 2
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.71 E-value=2.2e-08 Score=65.44 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
.|.+|+.+|++|++++|||+||.|||+|..|+.+
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999853
No 3
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0013 Score=66.06 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=34.8
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
.+..|.+|+++|.+|.++-+||+||+|||+|++|+++..
T Consensus 622 ~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~ 660 (663)
T COG0556 622 LEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL 660 (663)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 444799999999999999999999999999999986653
No 4
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.65 E-value=0.0019 Score=64.45 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le 188 (227)
.-|.+|+++|++|.++++||+||++||+|+.|+
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999874
No 5
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.64 E-value=0.0024 Score=63.32 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
+..+.+|+++|++|.++++||+||++||+|+.|+...
T Consensus 612 ~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~ 648 (652)
T PRK05298 612 EKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648 (652)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999998643
No 6
>PRK07883 hypothetical protein; Validated
Probab=96.62 E-value=0.0022 Score=62.86 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
+.+|+++|++|.++.+||+||++||+|..++.-
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~ 440 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLRA 440 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 669999999999999999999999999999853
No 7
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=96.58 E-value=0.0023 Score=63.32 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
-+.+|+++|++|.++++||+||.+||+|..|+.-.
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~ 237 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQ 237 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999999998543
No 8
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=96.23 E-value=0.0049 Score=60.49 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||.|..++.
T Consensus 194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 194 IEKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999984
No 9
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=96.13 E-value=0.0059 Score=62.13 Aligned_cols=32 Identities=34% Similarity=0.464 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||+|+.++.
T Consensus 203 ~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~ 234 (694)
T PRK14666 203 VDALRTEMEAASEALEFERAAVLRDQIRAVER 234 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 10
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=96.08 E-value=0.0067 Score=60.17 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||+|..++.
T Consensus 201 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 232 (567)
T PRK14667 201 LPELYDKIEEYSQKLMFEKAAVIRDQILALEN 232 (567)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 11
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=96.04 E-value=0.007 Score=60.46 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+++|+++|++|.++.+||+||++||+|..++.
T Consensus 217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 12
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=96.01 E-value=0.0071 Score=59.98 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
-+++|+++|++|.++.+||+||++||+|+.++.
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999974
No 13
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=95.99 E-value=0.0074 Score=59.83 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+.+|++|.++.+||+||++||+|+.++.
T Consensus 196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 227 (574)
T TIGR00194 196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE 227 (574)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 14
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=95.95 E-value=0.0081 Score=61.15 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||+|..|+.
T Consensus 207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999973
No 15
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=95.94 E-value=0.0083 Score=59.63 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||+|..++.
T Consensus 179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~ 210 (574)
T PRK14670 179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE 210 (574)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 16
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=95.94 E-value=0.0082 Score=60.19 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
+.+|+++|++|.++.+||+||++||+|+.|+.
T Consensus 205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 236 (624)
T PRK14669 205 ARSLRARMEAAALEMQFELAAKYRDLITTVEE 236 (624)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999974
No 17
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.016 Score=57.93 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh----------HHhHHHHHHhhhcc-----cccccchhhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAES----------LAASATALAFENAR-----FAFRLGQKVN 215 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~----------~a~~a~Al~~~n~~-----~~frlGq~v~ 215 (227)
+.+|+++|++|-++.+||+||+|||.|..++.-. ...+.-|++.++.. |-+|.|+.+.
T Consensus 204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg 276 (581)
T COG0322 204 LQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKLQDLDVIAGAVDGGEACVQVFFVRGGKLLG 276 (581)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccccccCCccchhhheeeecCCeEEEEEEEeecchhcC
Confidence 6689999999999999999999999999997311 12334444445422 5677777654
No 18
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=86.09 E-value=1.6 Score=36.63 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=36.5
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHH
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a 196 (227)
...++.+|+++|+.-=..++|.+.|++|-++.+++++.+....
T Consensus 45 l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 45 LRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447899999999988899999999999999999988876555
No 19
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.79 E-value=17 Score=31.24 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.3
Q ss_pred eccccccccccccccccHHh
Q 027151 98 FFFFQLDLATRVQCALNMEE 117 (227)
Q Consensus 98 cf~cqldl~tRLGCp~CYE~ 117 (227)
|++|. .-.+++-|+.|...
T Consensus 2 C~iC~-~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 2 CPICH-NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCC-CCCCCeECHHHHHH
Confidence 99999 47779999999765
No 20
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=78.07 E-value=1.7 Score=35.56 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=42.5
Q ss_pred ecccccccc-ccccccccHHhhHH--HHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcch
Q 027151 98 FFFFQLDLA-TRVQCALNMEEYDI--AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENY 174 (227)
Q Consensus 98 cf~cqldl~-tRLGCp~CYE~F~~--a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdY 174 (227)
||.||=+|. |+|.||.|..+.+. .-.--..|..-+....+..=..+|+- +..+..-..+--.+|..|++.|+.=.|
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~rGnl-Ke~e~~lgiSYPTvR~rLd~ii~~lg~ 79 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKNRGNL-KEMEKELGISYPTVRNRLDKIIEKLGY 79 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHhcCCH-HHHHHHHCCCcHHHHHHHHHHHHHhCC
Confidence 888887765 49999999886543 01222334444444444444556651 111111111233677788888877777
No 21
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=77.25 E-value=4 Score=41.27 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=33.5
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
...++++|+.+--.||+.|||..|-.+.|||..+..+..
T Consensus 205 sgeeleelEndKgcAVadEDfdlAkdkkdeiealRaeil 243 (666)
T KOG4825|consen 205 SGEELEELENDKGCAVADEDFDLAKDKKDEIEALRAEIL 243 (666)
T ss_pred HHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 344688888888899999999999999999999987654
No 22
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.10 E-value=16 Score=38.49 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHH---HHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 121 AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLR---ADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 121 a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr---~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
|+.+..+++.++.+=.+ .++.+..-.++.+|+ +-++.|++.||||.||..=-++..+.++.
T Consensus 100 Ae~Vs~kVr~lDla~~R----------v~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~ 163 (773)
T KOG0412|consen 100 AETVSGKVRALDLAQNR----------VNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQAL 163 (773)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 45666777776665222 222333334566666 56789999999999999888877775443
No 23
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=70.24 E-value=2.9 Score=36.20 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=1.5
Q ss_pred HHHHHHHHHHhhHhhhh
Q 027151 175 ALAADLRDQICKLEAES 191 (227)
Q Consensus 175 E~AA~LRDeIk~Le~~~ 191 (227)
|+.-+||||++.|++++
T Consensus 31 ~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 31 EEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HCH--------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45568999999998877
No 24
>PRK11020 hypothetical protein; Provisional
Probab=69.35 E-value=16 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=35.7
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHh
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~ 194 (227)
-...|+.++.+|..|+..+|-|.-+++.|||..|+.++...
T Consensus 10 L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 10 LSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999998877533
No 25
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.82 E-value=25 Score=33.37 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHH----HHHhhcchHHHHH-----HHHHHhhHhhhhH
Q 027151 123 QLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQ----KAIDSENYALAAD-----LRDQICKLEAESL 192 (227)
Q Consensus 123 ~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq----~AIe~EdYE~AA~-----LRDeIk~Le~~~~ 192 (227)
+|+.+|++.+..+. +.+.+|++||.+|- +-|++|---==|+ -|.||+.|++-.+
T Consensus 72 HLkakLkes~~~l~----------------dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 72 HLKAKLKESENRLH----------------DRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554432 35567889988874 4577775433343 3899999986554
No 26
>PRK00420 hypothetical protein; Validated
Probab=66.71 E-value=13 Score=30.41 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=20.5
Q ss_pred eeeccccccccc----cccccccHHhhHH
Q 027151 96 ILFFFFQLDLAT----RVQCALNMEEYDI 120 (227)
Q Consensus 96 i~cf~cqldl~t----RLGCp~CYE~F~~ 120 (227)
..||.||+.|.. ...||.|-+.+..
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCeeee
Confidence 349999987764 9999999997774
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=65.61 E-value=4.7 Score=27.79 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=7.1
Q ss_pred cccccccHHhhH
Q 027151 108 RVQCALNMEEYD 119 (227)
Q Consensus 108 RLGCp~CYE~F~ 119 (227)
.+-||.|...+.
T Consensus 31 ~v~CPiC~~~~~ 42 (54)
T PF05605_consen 31 NVVCPICSSRVT 42 (54)
T ss_pred CccCCCchhhhh
Confidence 456777765444
No 28
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.06 E-value=47 Score=29.87 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
.+.+.+..|+..+++.||..|..+=++...+
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4667778999999999999999887666554
No 29
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=61.00 E-value=36 Score=27.61 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC--CchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 122 QQLRNKLTEVEEEISRQLEAKRGL--SSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 122 ~~Lr~kL~~vh~ev~~~~e~~~Gk--s~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
..|...|.+|..++.. .|. ........+..++.+.+.+|++|....|.++-++-++.|.+-+.++.
T Consensus 46 ~GLe~AL~~v~~~Ctd-----~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 46 AGLEKALEEVKAHCTD-----EGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHhhcCC-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 4677778888777644 111 01111123556788999999999999999888887777766655544
No 30
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=55.17 E-value=79 Score=22.96 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhcchHHHH--HHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAA--DLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA--~LRDeIk~Le~~~~ 192 (227)
++..++.+|..++..+.++.++ .+.++|..+..+..
T Consensus 67 ~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~ 104 (125)
T PF13801_consen 67 ELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELR 104 (125)
T ss_dssp HHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999986653 45555555554443
No 31
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.73 E-value=64 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=20.6
Q ss_pred cccccccHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 027151 108 RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEA 141 (227)
Q Consensus 108 RLGCp~CYE~F~~a~~Lr~kL~~vh~ev~~~~e~ 141 (227)
--.++.-|++|+. ..+-|++.|..++-.|+.
T Consensus 116 e~~~a~~~d~yR~---~LK~IR~~E~sl~p~R~~ 146 (271)
T PF13805_consen 116 EDQYADRLDQYRI---HLKSIRNREESLQPSRDR 146 (271)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHH
Confidence 4457888999995 445555667676665554
No 32
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=51.34 E-value=52 Score=28.22 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc
Q 027151 161 LRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF 206 (227)
Q Consensus 161 Lr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~ 206 (227)
.+++|..+|..|.|++|| +|..+.+..+...+.-+.-+.-.|..|
T Consensus 83 ~~~~m~~Li~Ad~FDeaA-vra~~~kma~~~~e~~v~~~~~~~qmy 127 (162)
T PRK12751 83 DREAMHKLITADKFDEAA-VRAQAEKMSQNQIERHVEMAKVRNQMY 127 (162)
T ss_pred HHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999986 677777766554444444445556665
No 33
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=49.04 E-value=24 Score=26.49 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcchHHHHHH
Q 027151 160 RLRADLQKAIDSENYALAADL 180 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA~L 180 (227)
...++.++.+...+|++||++
T Consensus 8 l~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 8 LYVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 456789999999999999987
No 34
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.61 E-value=5.8 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=15.4
Q ss_pred eeeccccccccc----------cccccccHHhh
Q 027151 96 ILFFFFQLDLAT----------RVQCALNMEEY 118 (227)
Q Consensus 96 i~cf~cqldl~t----------RLGCp~CYE~F 118 (227)
|.|+.|+..+.- .++||.|.+.|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 567777665443 68888887765
No 35
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.11 E-value=1.4e+02 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=18.1
Q ss_pred cccccchhhhhhhhcCccccc
Q 027151 206 FAFRLGQKVNHKIFGNNMPFI 226 (227)
Q Consensus 206 ~~frlGq~v~h~~~gyr~vv~ 226 (227)
..|+.||+|..+-+|-.|.|+
T Consensus 635 ~~~~~Gd~V~v~~~~~~g~v~ 655 (782)
T PRK00409 635 EELKVGDEVKYLSLGQKGEVL 655 (782)
T ss_pred cCCCCCCEEEEccCCceEEEE
Confidence 459999999999999888875
No 36
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.20 E-value=1.3e+02 Score=23.02 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 122 QQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 122 ~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
..|+..+..++....+ ..|.+.....-.+|..|+.+|+.++..=.=-+--.|.++|..|+.+..
T Consensus 22 ~~L~~~~~~L~~~~R~-------~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 22 AKLRKENESLQKELRH-------LMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKER 85 (100)
T ss_pred HHHHHHHHHHHHHHhc-------cccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544222 123444444445799999999999998777778888889988876543
No 37
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=47.16 E-value=70 Score=23.07 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=22.6
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
....+..+..+|..+++.+||+.|+.+=.+++=+
T Consensus 36 ~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~ 69 (78)
T PF07743_consen 36 IEERIKELIKELAEAFDAKDWEEAKEALRKLKYL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 3345667777788888888888887766555544
No 38
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=46.73 E-value=61 Score=32.55 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
-.+|++++|.||+.-|=+.|+++.|+|+.++..+
T Consensus 367 Kt~Lrqkrq~A~e~~n~k~~~ey~~qL~~~E~~~ 400 (521)
T COG5296 367 KTELRQKRQRAIELKNKKAAMEYQRQLEEIEDNE 400 (521)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Confidence 3489999999999999999999999999998644
No 39
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=45.72 E-value=9.7 Score=27.25 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.9
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.|||++.|. +..+.|++|++.+..
T Consensus 24 A~aGFyy~~~---------------~d~v~C~~C~~~l~~ 48 (70)
T PF00653_consen 24 ARAGFYYTGT---------------GDRVRCFYCGLELDN 48 (70)
T ss_dssp HHTTEEEESS---------------TTEEEETTTTEEEES
T ss_pred HHCCCEEcCC---------------CCEEEEeccCCEEeC
Confidence 6789999764 567899999997753
No 40
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=42.34 E-value=8.2 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.0
Q ss_pred eeeccccccccc----------cccccccHHhhH
Q 027151 96 ILFFFFQLDLAT----------RVQCALNMEEYD 119 (227)
Q Consensus 96 i~cf~cqldl~t----------RLGCp~CYE~F~ 119 (227)
|.||.|+..+.- ++.||.|-..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 456666654322 777888776664
No 41
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.06 E-value=86 Score=26.16 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhHhhh------hHHhHHHHHHhh
Q 027151 160 RLRADLQKAIDSENYALAADLRDQICKLEAE------SLAASATALAFE 202 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~------~~a~~a~Al~~~ 202 (227)
.+-+..+++++++||.-|++|-|.+-..+.+ ..+...++|+|+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5556788899999999999999998776533 344455566665
No 42
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=39.85 E-value=30 Score=27.74 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccccccchh
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQK 213 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlGq~ 213 (227)
..+||.+|+=+= |+|+-+|-.|.+++.+.+ +|-.+=.+|.|+.|+.
T Consensus 3 ~aeLR~qLqFvE-----EEa~LlRRkl~ele~eN~-----~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVE-----EEAELLRRKLSELEDENK-----QLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCC
Confidence 347888887652 679999999999998776 4444566788888764
No 43
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=39.81 E-value=16 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=18.9
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.+||++.|. ...+.|++|++.+..
T Consensus 22 a~~Gfyy~~~---------------~d~v~C~~C~~~~~~ 46 (69)
T cd00022 22 AEAGFYYTGR---------------GDEVKCFFCGLELKN 46 (69)
T ss_pred HHcCCeEcCC---------------CCEEEeCCCCCCccC
Confidence 4688888654 336889999998765
No 44
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=39.06 E-value=1.9e+02 Score=24.75 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF 206 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~ 206 (227)
+.+-+.+|.+.|....|++| ++|+++++++.........-..++|..|
T Consensus 81 ~~~~r~~l~~li~a~~~D~a-ka~a~~~~m~~~~~~~~~~r~k~~~~m~ 128 (160)
T COG3678 81 LRSKRRALHELIAADQFDEA-KARAQAEKMENQRQALRELRVKSDNQMY 128 (160)
T ss_pred HHHHHHHHHHHHhcCCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999 8999999998777666666666666665
No 45
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=38.53 E-value=90 Score=22.84 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=28.0
Q ss_pred HhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 152 ~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
...-.+++.|++.|+.+ .|||+=-.||-.|+.|.++
T Consensus 18 l~~I~De~~L~kmLe~~---~dyeeRr~IRaaiR~lr~~ 53 (54)
T PF12510_consen 18 LESIEDEEVLEKMLEAT---TDYEERRRIRAAIRELRKK 53 (54)
T ss_pred HHHhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhc
Confidence 34445677788777765 5899999999999999754
No 46
>CHL00095 clpC Clp protease ATP binding subunit
Probab=38.01 E-value=68 Score=33.19 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
+|..|+.+.+.++.+++|++|+.+|+++..++++..
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (821)
T CHL00095 418 ELREILKDKDEAIREQDFETAKQLRDREMEVRAQIA 453 (821)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 456677777888999999999999999877776554
No 47
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=37.95 E-value=1.5e+02 Score=21.29 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHH
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATAL 199 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al 199 (227)
-+++.+++++|+++...++.+.-..|..+|+.........-..++
T Consensus 7 Lme~mE~rE~le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f 51 (78)
T PF07743_consen 7 LMEQMELREELEEAQNSDDEAELEELKKEIEERIKELIKELAEAF 51 (78)
T ss_dssp HHHHHHHHHHHHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999988876778888888888777655544444444
No 48
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=37.90 E-value=67 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICK 186 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~ 186 (227)
++.+.=..++++|++||+++|.+.-+++.+
T Consensus 27 ~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~ 56 (121)
T PF14276_consen 27 SIEEQLEQIEEAIENEDWEKAYKETEELEK 56 (121)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666788899999999999887555443
No 49
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=37.85 E-value=2.2e+02 Score=25.36 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 121 AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 121 a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
.+..|.-+.+++.++..|..---+--+..+. .+.++|+ -|.+||..|==|..-+|-|++..+++
T Consensus 114 ln~FR~qm~dlE~~l~~QQalvy~hMSeeER----~EaeQLQ-sLR~avRqElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 114 LNSFREQMMDLELHLMRQQALVYRHMSEEER----EEAEQLQ-SLRSAVRQELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667777888877754422121112221 2344444 46667776666777777777766654
No 50
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=37.76 E-value=8.7 Score=37.35 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.7
Q ss_pred ccccchhhhhhhhcCccccc
Q 027151 207 AFRLGQKVNHKIFGNNMPFI 226 (227)
Q Consensus 207 ~frlGq~v~h~~~gyr~vv~ 226 (227)
.+.-||..+|++|||++||+
T Consensus 66 ~~etgqsF~h~~f~yvgvv~ 85 (386)
T KOG4408|consen 66 KYETGQSFLHDTFGYVGVVL 85 (386)
T ss_pred cccccceeeeeecccceEEE
Confidence 36789999999999999985
No 51
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.13 E-value=2e+02 Score=27.53 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHH---HhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc-ccccc
Q 027151 156 LSIIRLRADLQKA---IDSENYALAADLRDQICKLEAESLAASATALAFENARF-AFRLG 211 (227)
Q Consensus 156 ~~LeeLr~~Lq~A---Ie~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~-~frlG 211 (227)
.++.+|+..|++. ...|+=+.+.+|+++|++++.....-.+ -|-..|..| ..=||
T Consensus 46 krLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa-~LPkkNGlyL~liLG 104 (330)
T PF07851_consen 46 KRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEA-FLPKKNGLYLRLILG 104 (330)
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHh-hCCCCCCcccceecc
Confidence 3677888888777 6778888899999999998865543332 233346666 55555
No 52
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=36.76 E-value=1.9e+02 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027151 117 EYDIAQQLRNKLTEVEEEISR 137 (227)
Q Consensus 117 ~F~~a~~Lr~kL~~vh~ev~~ 137 (227)
+.+.|+.|.|.|+.+=..+..
T Consensus 4 Tl~EA~~lLP~l~~~~~~~~~ 24 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEIRE 24 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 445578888888877666533
No 53
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=35.87 E-value=1.2e+02 Score=21.22 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhh---cccccccchhhhhhhhcC
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFEN---ARFAFRLGQKVNHKIFGN 221 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n---~~~~frlGq~v~h~~~gy 221 (227)
++..++++|++..+. ..-+.++.++.-.. ||..-+ ..++||.|-+=-=+..||
T Consensus 9 ~i~a~~e~l~~~~~~-------lt~e~~~~l~~~~~-----al~~~~~~~~e~afr~G~~d~l~~~~~ 64 (64)
T PF12644_consen 9 EIMATKEELEELEER-------LTKEDKKRLEEYID-----ALGARWGLESEEAFRQGFRDGLRLLGY 64 (64)
T ss_pred HHHHHHHHHHHHHhh-------cCHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHhCc
Confidence 566777777776443 33333444443333 222223 336888887766666665
No 54
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.50 E-value=1.1e+02 Score=23.45 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhh--cchHHHHHHHHHHhhHh
Q 027151 124 LRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDS--ENYALAADLRDQICKLE 188 (227)
Q Consensus 124 Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~--EdYE~AA~LRDeIk~Le 188 (227)
|+..|...|.++.+ . .+-+.. ....|..|..+++.++.. +....-..|.|.+...-
T Consensus 2 L~~~L~~L~~eL~~-----~--~~ld~~--~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av 59 (85)
T PF14357_consen 2 LQELLEKLHQELEQ-----N--PPLDEE--TRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAV 59 (85)
T ss_pred HHHHHHHHHHHHhc-----C--CCCCHH--HHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHH
Confidence 66777777877544 1 112222 233678888888888888 56666667777776643
No 55
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=35.17 E-value=2.9e+02 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
++..+.++|..+|..+.|++|+ +|+-+.++
T Consensus 86 ~m~a~~~~~~~Ll~a~~FDeaa-vral~~~~ 115 (170)
T PRK12750 86 EMKAHHAKVQALVLADDFDEAA-ANDLAKQM 115 (170)
T ss_pred HHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Confidence 5667888999999999999986 56555443
No 56
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=34.72 E-value=1.3e+02 Score=26.58 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHH
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a 196 (227)
.+|.+++++|+.-=.+.+|.+=|++--+|++|.++.+.-++
T Consensus 51 ~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~ 91 (175)
T KOG4253|consen 51 AEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSK 91 (175)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999887754443
No 57
>TIGR02444 conserved hypothetical protein TIGR02444. Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various Proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.
Probab=34.22 E-value=2.2e+02 Score=23.17 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a 193 (227)
.+..+|..|+......+-+..+.+|++|+.+|=+.+.
T Consensus 70 PlR~lRr~~K~~~~~~~~~~~~~lr~~lk~~EL~aEr 106 (116)
T TIGR02444 70 PLRAVRRQLKQHLPDTPEEINAALRAAVKALELQGEK 106 (116)
T ss_pred HHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4778888998887777777788899999998744443
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=33.43 E-value=1.1e+02 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQIC 185 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk 185 (227)
.+.++...|.++++.+||+.|+.+=-+++
T Consensus 126 ~~~~~~~~l~~~~~~~d~~~A~~~~~rL~ 154 (173)
T PRK01773 126 EQQAILTELSTALNSQQWQQASQINDRLR 154 (173)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555566666676777776665443333
No 59
>PHA00616 hypothetical protein
Probab=33.38 E-value=29 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=19.7
Q ss_pred ccccccHHhhHHHHHHHHHHHHHHHH
Q 027151 109 VQCALNMEEYDIAQQLRNKLTEVEEE 134 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL~~vh~e 134 (227)
.+||.|-..|...+++..=+...|++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCC
Confidence 48999999999877777766554433
No 60
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.28 E-value=40 Score=20.86 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=11.4
Q ss_pred HHHHHHHhhHhhhhHH
Q 027151 178 ADLRDQICKLEAESLA 193 (227)
Q Consensus 178 A~LRDeIk~Le~~~~a 193 (227)
-++|++|+.||.++..
T Consensus 4 ~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 4 NRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578888888877653
No 61
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.95 E-value=1.9e+02 Score=26.60 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=32.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 153 ~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
+.-.+|.+|=.-|+.+|.+..|++|-.|..-+++|...
T Consensus 101 ~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~ 138 (338)
T PF04124_consen 101 DRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR 138 (338)
T ss_pred HHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh
Confidence 44556778889999999999999999999999988653
No 62
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=32.15 E-value=1.5e+02 Score=20.66 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
++..++.-+++|-..-.||+.+.|..-+++|+.+..
T Consensus 4 Qi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 4 QINIIESYIKQAKAARRFDEVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999998888886653
No 63
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=32.14 E-value=34 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=14.0
Q ss_pred cccccccHHhhHHHHHHHHHHHH
Q 027151 108 RVQCALNMEEYDIAQQLRNKLTE 130 (227)
Q Consensus 108 RLGCp~CYE~F~~a~~Lr~kL~~ 130 (227)
-++||.|...+.. |.+.+++
T Consensus 21 d~~Cp~C~~~~~~---~~~~~~~ 40 (162)
T PF13462_consen 21 DFQCPHCAKFHEE---LEKLLKK 40 (162)
T ss_dssp -TTSHHHHHHHHH---HHHHHHH
T ss_pred CCCCHhHHHHHHH---Hhhhhhh
Confidence 4599999998884 5455554
No 64
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=31.91 E-value=2.2e+02 Score=21.35 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 117 EYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 117 ~F~~a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
.|+.|.+|.+.|.+.+.= ..-+.+...-...+++...-.+...++.+++.+=....+.. .+..+++..++.++.
T Consensus 2 I~~~a~eL~~~I~~s~ey-~~~~~a~~~l~~d~e~~~l~~~f~~~q~~~~~~q~~g~~~~-~e~~~~l~~~~~~l~ 75 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEY-KRYKAAEEALEADPEAQKLIEEFQKLQQELQNAQMYGKEPP-KEEIEELQELQEELM 75 (108)
T ss_dssp HHHHHHHHHHHHHTSHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhccCCc-HHHHHHHHHHHHHHH
Confidence 466677777777776543 22222222212233333333345556666655544455544 555666666655543
No 65
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=30.83 E-value=36 Score=29.22 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=28.7
Q ss_pred ccccCceeeccccccccc------cccccccHHhhH---H---HHHHHHHHHHHHHH
Q 027151 90 ESANEDILFFFFQLDLAT------RVQCALNMEEYD---I---AQQLRNKLTEVEEE 134 (227)
Q Consensus 90 ~s~ne~i~cf~cqldl~t------RLGCp~CYE~F~---~---a~~Lr~kL~~vh~e 134 (227)
+.++.--.||.|+..++- -+-||.|-+... . .+.|.+++..++.+
T Consensus 112 e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 112 EENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred ccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 445567779998877654 789999976543 2 33455555555544
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.26 E-value=1.6e+02 Score=32.11 Aligned_cols=25 Identities=8% Similarity=0.385 Sum_probs=15.7
Q ss_pred cccccHHhhHHHHHHHHHHHHHHHH
Q 027151 110 QCALNMEEYDIAQQLRNKLTEVEEE 134 (227)
Q Consensus 110 GCp~CYE~F~~a~~Lr~kL~~vh~e 134 (227)
.||+|-..|..-..+...+..++..
T Consensus 679 ~C~LC~R~f~~eee~~~f~~~L~~~ 703 (1311)
T TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSK 703 (1311)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHHH
Confidence 7888888888744444555555444
No 67
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.92 E-value=2.7e+02 Score=23.95 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhHhhh
Q 027151 175 ALAADLRDQICKLEAE 190 (227)
Q Consensus 175 E~AA~LRDeIk~Le~~ 190 (227)
++..++|+.|...+..
T Consensus 91 ~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 91 ERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.61 E-value=3.7e+02 Score=25.65 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=18.9
Q ss_pred ceeeccccccccccccccccHHhhHH-HHHHHHHHHHHHHH
Q 027151 95 DILFFFFQLDLATRVQCALNMEEYDI-AQQLRNKLTEVEEE 134 (227)
Q Consensus 95 ~i~cf~cqldl~tRLGCp~CYE~F~~-a~~Lr~kL~~vh~e 134 (227)
+..||.|+-.+..- |.=+..... .+.|...++.+...
T Consensus 284 ~~~Cp~C~~~~~~~---~~~~~~l~d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 284 GGVCPTCTQQISEG---PDRITKIKDKLKELQHSLEKLDTA 321 (562)
T ss_pred CCCCCCCCCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888877665 443333333 33444444444433
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.44 E-value=1.4e+02 Score=28.40 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=10.6
Q ss_pred cccccccHHhhHH
Q 027151 108 RVQCALNMEEYDI 120 (227)
Q Consensus 108 RLGCp~CYE~F~~ 120 (227)
.-.||.|-..|+.
T Consensus 284 ~~~Cp~C~~~~~~ 296 (562)
T PHA02562 284 GGVCPTCTQQISE 296 (562)
T ss_pred CCCCCCCCCcCCC
Confidence 4589999988875
No 70
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.36 E-value=5e+02 Score=26.60 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC-CchhHHHhhHHhHHHHHHHHHHHHh
Q 027151 121 AQQLRNKLTEVEEEISRQLEAKRGL-SSKSEAQDKALSIIRLRADLQKAID 170 (227)
Q Consensus 121 a~~Lr~kL~~vh~ev~~~~e~~~Gk-s~~~~a~~~~~~LeeLr~~Lq~AIe 170 (227)
+..|+..|..++..+..-+..+ |. ....++...-.++.+|+.++.++-.
T Consensus 276 L~~l~~~L~~aE~~l~~fr~~~-~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 276 LPEVRSELDQAEEKLNVYRQQR-DSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655533332 22 1111222222245555555555433
No 71
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=28.97 E-value=84 Score=25.34 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
++.|=++=++|-++-||++|=+|||+|.++
T Consensus 112 v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~ 141 (156)
T cd07963 112 IEALIAQRNQARKAKDWAEADRIRDELAAQ 141 (156)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHC
Confidence 555655666777889999999999998775
No 72
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.69 E-value=2.9e+02 Score=22.51 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHH---HHHHHhhHh
Q 027151 157 SIIRLRADLQKAIDSENYALAAD---LRDQICKLE 188 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~---LRDeIk~Le 188 (227)
++.+|+.++.+.|+ ||-+.-.+ ||+.|.+++
T Consensus 23 el~~LK~~~~el~E-EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 23 ELGALKKQLAELLE-ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 46678888877664 45554444 788887764
No 73
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=27.58 E-value=2.3e+02 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=26.2
Q ss_pred hHHhHHHHHHHHHHHHhhc------chHH------HHHHHHHHhhHhhhh
Q 027151 154 KALSIIRLRADLQKAIDSE------NYAL------AADLRDQICKLEAES 191 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~E------dYE~------AA~LRDeIk~Le~~~ 191 (227)
+...++++...|++||+.- =||+ --+|+||-+.|.+++
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556889999999999753 3433 345777777776544
No 74
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=27.35 E-value=1.9e+02 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICK 186 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~ 186 (227)
.+.++...|.++++.+||+.|+.+=.+++=
T Consensus 112 ~~~~~~~~l~~~~~~~d~~~A~~~~~kLky 141 (157)
T TIGR00714 112 MFQTRHQLLVEQLDNQTWAAAADYTRKLRF 141 (157)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666777777777888777765444443
No 75
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=63 Score=27.90 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=31.6
Q ss_pred cccccccccccccccHHhhHH-HHHHHHHHHHHHHHHHHHHh
Q 027151 100 FFQLDLATRVQCALNMEEYDI-AQQLRNKLTEVEEEISRQLE 140 (227)
Q Consensus 100 ~cqldl~tRLGCp~CYE~F~~-a~~Lr~kL~~vh~ev~~~~e 140 (227)
.||.=+.|=|||=.||..|.. -..-+++|+++.+=+.+|-+
T Consensus 78 ~~qty~EgclgC~TaY~iy~ctethYek~L~klskfl~~qNe 119 (154)
T KOG4069|consen 78 TPQTYFEGCLGCFTAYAIYACTETHYEKKLDKLSKFLNRQNE 119 (154)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467778899999999999986 45677778887777766544
No 76
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=27.09 E-value=48 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=12.8
Q ss_pred cccccccHHhhHHHHHHHHHH
Q 027151 108 RVQCALNMEEYDIAQQLRNKL 128 (227)
Q Consensus 108 RLGCp~CYE~F~~a~~Lr~kL 128 (227)
-..||.|+..+. .|.+.+
T Consensus 14 D~~Cp~C~~~~~---~l~~~~ 31 (154)
T cd03023 14 DYNCGYCKKLAP---ELEKLL 31 (154)
T ss_pred CCCChhHHHhhH---HHHHHH
Confidence 358999999886 455444
No 77
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=27.03 E-value=88 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
|..+.+.-++||++|||..|-.+.-.|..|++..+
T Consensus 173 IgaidenKqeAVakEdfdlAKkaklAiaDLkKsge 207 (666)
T KOG4825|consen 173 IGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSGE 207 (666)
T ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999999975443
No 78
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=26.32 E-value=60 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHHHHhh--cchHHHH
Q 027151 156 LSIIRLRADLQKAIDS--ENYALAA 178 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~--EdYE~AA 178 (227)
.+|+.|+++|+.++.. |.+-++|
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiA 34 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIA 34 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999988754 4444444
No 79
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=26.16 E-value=63 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhcc
Q 027151 158 IIRLRADLQKAIDSEN 173 (227)
Q Consensus 158 LeeLr~~Lq~AIe~Ed 173 (227)
|+.+.++|+..|+...
T Consensus 3 L~~~~~~l~~~~~~~~ 18 (93)
T PF00816_consen 3 LEAQIKELEKEIEERR 18 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 80
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=26.16 E-value=40 Score=22.88 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=10.9
Q ss_pred cccccccHHhhHH
Q 027151 108 RVQCALNMEEYDI 120 (227)
Q Consensus 108 RLGCp~CYE~F~~ 120 (227)
-..||.||..+..
T Consensus 6 d~~Cp~C~~~~~~ 18 (98)
T cd02972 6 DPLCPYCYLFEPE 18 (98)
T ss_pred CCCCHhHHhhhHH
Confidence 3579999999994
No 81
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=25.91 E-value=71 Score=31.21 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=50.4
Q ss_pred cccccccHHhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHH-HHHHHhh
Q 027151 108 RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAAD-LRDQICK 186 (227)
Q Consensus 108 RLGCp~CYE~F~~a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~-LRDeIk~ 186 (227)
-|+.|.=.++|..|+.+.. .+ .|. ... ....+-++|.+.+++.+.++.|-++|+ |++.++.
T Consensus 387 ~v~iP~~~DQ~~Na~rv~~------~G--------~G~---~l~-~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 387 MVGLPMMGDQFYNTNKYVE------LG--------IGR---ALD-TVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRH 448 (507)
T ss_pred EEECCCCccHHHHHHHHHH------cC--------cEE---Eec-cCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 6888999999997665533 11 221 111 012244688899999999999977664 6677665
Q ss_pred HhhhhHHhHHHHHHhhhcccccccchhhhh
Q 027151 187 LEAESLAASATALAFENARFAFRLGQKVNH 216 (227)
Q Consensus 187 Le~~~~a~~a~Al~~~n~~~~frlGq~v~h 216 (227)
.-.. +. ..|-.+..|+.|-|+-+.|
T Consensus 449 ~p~~---~~--~~av~~iE~v~r~~~g~~~ 473 (507)
T PHA03392 449 QPMT---PL--HKAIWYTEHVIRNKHGNTS 473 (507)
T ss_pred CCCC---HH--HHHHHHHHHHHhCCCCccc
Confidence 3211 12 2222456677776643333
No 82
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.87 E-value=31 Score=31.03 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=15.4
Q ss_pred Cceeeccccccccc-cccccccHHhhH
Q 027151 94 EDILFFFFQLDLAT-RVQCALNMEEYD 119 (227)
Q Consensus 94 e~i~cf~cqldl~t-RLGCp~CYE~F~ 119 (227)
--+.|++|+..-.- |++||.|-++-.
T Consensus 196 R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp EEEEETTT--EEE--TTS-TTT---SS
T ss_pred EEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 56789999987655 999999988755
No 83
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=25.62 E-value=14 Score=31.33 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=9.8
Q ss_pred cccccccHHhhHH
Q 027151 108 RVQCALNMEEYDI 120 (227)
Q Consensus 108 RLGCp~CYE~F~~ 120 (227)
+-+||.|--+|..
T Consensus 28 ~~~c~~c~~~f~~ 40 (154)
T PRK00464 28 RRECLACGKRFTT 40 (154)
T ss_pred eeeccccCCcceE
Confidence 5788888877775
No 84
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=25.61 E-value=88 Score=30.25 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 158 IIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
+++|=++=++|-++-||++|=+|||+|.++
T Consensus 418 ~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~ 447 (463)
T PRK00260 418 IEALIEERQEARKAKDFALADAIRDELAAL 447 (463)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Confidence 555555556678889999999999998776
No 85
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=24.77 E-value=1.2e+02 Score=26.43 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc-ccccchh
Q 027151 162 RADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF-AFRLGQK 213 (227)
Q Consensus 162 r~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~-~frlGq~ 213 (227)
++.|...|..++|++|| +|..+.+..+...+..++-+.-+|-.| -+-+-||
T Consensus 78 r~amh~LI~ad~FDEaa-vra~a~kma~~~~e~~Vem~k~~nqmy~lLTPEQK 129 (166)
T PRK10363 78 METMHRLVTAENFDENA-VRAQAEKMAQEQVARQVEMAKVRNQMYRLLTPEQQ 129 (166)
T ss_pred HHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 46777999999999987 788888887666555555555666666 3333333
No 86
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=24.02 E-value=2.4e+02 Score=24.23 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhh-cchHHHHHHHHH
Q 027151 158 IIRLRADLQKAIDS-ENYALAADLRDQ 183 (227)
Q Consensus 158 LeeLr~~Lq~AIe~-EdYE~AA~LRDe 183 (227)
+..+..+|.++++. .||+.|+.+=.+
T Consensus 130 ~~~~~~~l~~~~~~~~d~~~A~~~~~k 156 (176)
T PRK03578 130 RRERYAELGALLDSRGDDQAAAEAVRQ 156 (176)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 34444444455544 455555443333
No 87
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=45 Score=32.76 Aligned_cols=65 Identities=31% Similarity=0.302 Sum_probs=40.4
Q ss_pred ccccccHHhhHHHHHHHHHHHHHHHHHHHHH-hhh----hcC--CchhHHHhhHHhHHHHHHHHHHHHhhcc
Q 027151 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQL-EAK----RGL--SSKSEAQDKALSIIRLRADLQKAIDSEN 173 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL~~vh~ev~~~~-e~~----~Gk--s~~~~a~~~~~~LeeLr~~Lq~AIe~Ed 173 (227)
.-.+.|+|..+.|..|+.-|++.+.+.++-. ++- .|+ -+..+..+..-+-..|+..|+.||-.|.
T Consensus 56 ~IraK~~EYLdRAEkLK~yL~~~~~~~~k~~~~a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~sAIv~EK 127 (439)
T KOG0739|consen 56 SIRAKFTEYLDRAEKLKAYLKEKEKGAGKKGDEAVATVPKGKKKDSDGEGEDDEPEKKKLRSALNSAIVREK 127 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCCCCccccccCCChhHHHHHHHhhhhhhccC
Confidence 3468899999999999999998877644411 110 011 1111111122245689999999998774
No 88
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=23.97 E-value=3.9e+02 Score=24.07 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHhhcch-----HHHHHHHHHHhhHhhhhHHhHH
Q 027151 156 LSIIRLRADLQKAIDSENY-----ALAADLRDQICKLEAESLAASA 196 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdY-----E~AA~LRDeIk~Le~~~~a~~a 196 (227)
++++-.+..+++|.. +++ .++..|||+|...+.+...+..
T Consensus 135 Ld~D~~k~r~~ka~k-~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e 179 (244)
T cd07595 135 LDMDSARSRYNAAHK-SSGGQGAAAKVDALKDEYEEAELKLEQCRD 179 (244)
T ss_pred HHHHHHHHHHHhccc-cccccccccccchHHHHHHHHHHHHHHHHH
Confidence 455566667766632 233 4455778888777766654443
No 89
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=23.96 E-value=43 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=18.1
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||++|.|- +..+.|++|++.+..
T Consensus 24 A~~Gfyy~~~---------------~d~v~C~~C~~~l~~ 48 (71)
T smart00238 24 AEAGFYYTGV---------------GDEVKCFFCGGELDN 48 (71)
T ss_pred HHcCCeECCC---------------CCEEEeCCCCCCcCC
Confidence 4677887652 336889999998765
No 90
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.93 E-value=33 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=12.4
Q ss_pred cccccHHhhHHHHHHHHHHHH
Q 027151 110 QCALNMEEYDIAQQLRNKLTE 130 (227)
Q Consensus 110 GCp~CYE~F~~a~~Lr~kL~~ 130 (227)
-||.|+.++.....|+.-|+-
T Consensus 26 tCP~C~a~~~~srnLrRHle~ 46 (54)
T PF09237_consen 26 TCPICGAVIRQSRNLRRHLEI 46 (54)
T ss_dssp E-TTT--EESSHHHHHHHHHH
T ss_pred CCCcchhhccchhhHHHHHHH
Confidence 378888888877777765544
No 91
>PRK04098 sec-independent translocase; Provisional
Probab=23.57 E-value=2.1e+02 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=19.6
Q ss_pred HhhHHhHHHHHHHHHHHHhhcchHHHHH-HHH
Q 027151 152 QDKALSIIRLRADLQKAIDSENYALAAD-LRD 182 (227)
Q Consensus 152 ~~~~~~LeeLr~~Lq~AIe~EdYE~AA~-LRD 182 (227)
...++.+.+|+++++++ .+.+|.++. ||.
T Consensus 50 l~~Ei~~~elk~e~~k~--k~~l~~~~~~l~~ 79 (158)
T PRK04098 50 LDKEINIEEIKEEALKY--KKEFESAVESLKK 79 (158)
T ss_pred HHHHHhhHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 34556677888777776 555777666 666
No 92
>PRK03057 hypothetical protein; Provisional
Probab=23.51 E-value=1.9e+02 Score=25.39 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=32.6
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
...++++|..+.+.|++.-|.|.=-+|=++++.|+.+
T Consensus 142 ~~~~~~~L~~~ID~ALd~~D~e~F~~Lt~~L~~l~~~ 178 (180)
T PRK03057 142 KRNEVSRLRMQIDQALDRKDMEEFQRLTEKLKKLEGQ 178 (180)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence 3446889999999999999999999999999999654
No 93
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=23.35 E-value=29 Score=34.43 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.8
Q ss_pred Cceeeccccccccc--ccccccc
Q 027151 94 EDILFFFFQLDLAT--RVQCALN 114 (227)
Q Consensus 94 e~i~cf~cqldl~t--RLGCp~C 114 (227)
....|++|+.|+++ |+-|+.|
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeC 35 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAEC 35 (438)
T ss_pred CCCCCccHhHHhccceEEEeecC
Confidence 67889999999999 6778777
No 94
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=23.25 E-value=1.2e+02 Score=30.80 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHhhcchH----HHHHHHHHHhhHhhhhHHhH
Q 027151 156 LSIIRLRADLQKAIDSENYA----LAADLRDQICKLEAESLAAS 195 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE----~AA~LRDeIk~Le~~~~a~~ 195 (227)
.+|..|+.+|++..++..+. ++-.|+++|++.|.+++...
T Consensus 373 eeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~ 416 (492)
T PF06273_consen 373 EEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLT 416 (492)
T ss_pred hhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHH
Confidence 38999999999988855433 34778999999988776433
No 95
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=23.15 E-value=33 Score=33.42 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.7
Q ss_pred eccccccc-------------cccccccccHHhhHH
Q 027151 98 FFFFQLDL-------------ATRVQCALNMEEYDI 120 (227)
Q Consensus 98 cf~cqldl-------------~tRLGCp~CYE~F~~ 120 (227)
||.||..+ .+|.+|++|-.+|=.
T Consensus 365 Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~ 400 (421)
T COG5151 365 CFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCS 400 (421)
T ss_pred ceeccCCCCCCCCCcccccccccceechhhhhhhhh
Confidence 99999844 459999999999975
No 96
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.85 E-value=6.1e+02 Score=25.12 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=19.0
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 163 ADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 163 ~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
..++.|+.+.+|..||.+=.+++.+
T Consensus 113 ~~~~~al~~~~~~~Aa~~L~~~~~~ 137 (593)
T PF06248_consen 113 EEVEEALKEGNYLDAADLLEELKSL 137 (593)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555888899999999887776664
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=4.5e+02 Score=27.69 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=9.0
Q ss_pred HHHhhhcccccccchhh
Q 027151 198 ALAFENARFAFRLGQKV 214 (227)
Q Consensus 198 Al~~~n~~~~frlGq~v 214 (227)
+++-.-..|.++.|+.+
T Consensus 532 ~Ie~~e~~~gik~GDvi 548 (652)
T COG2433 532 AIEEAEEEYGIKEGDVI 548 (652)
T ss_pred HHHhHHHhhccccCcEE
Confidence 33334455666666644
No 98
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.18 E-value=4.4e+02 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=2.0
Q ss_pred cccccccHHhhHHHHHHHHHH
Q 027151 108 RVQCALNMEEYDIAQQLRNKL 128 (227)
Q Consensus 108 RLGCp~CYE~F~~a~~Lr~kL 128 (227)
-++|-..|=.|. .|++.+
T Consensus 41 l~~~I~ly~l~q---kl~~~~ 58 (190)
T PF06936_consen 41 LFGCILLYLLWQ---KLSPSF 58 (190)
T ss_dssp ------------------HHH
T ss_pred HHHHHHHHHHHH---HHHHHH
Confidence 588999988888 566666
No 99
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=68 Score=28.46 Aligned_cols=26 Identities=4% Similarity=-0.216 Sum_probs=21.9
Q ss_pred ceeeccccccccccccccccHHhhHH
Q 027151 95 DILFFFFQLDLATRVQCALNMEEYDI 120 (227)
Q Consensus 95 ~i~cf~cqldl~tRLGCp~CYE~F~~ 120 (227)
=..|+.||-....-.-|+.||+.-..
T Consensus 93 l~~CP~CGh~k~a~~LC~~Cy~kV~k 118 (176)
T KOG4080|consen 93 LNTCPACGHIKPAHTLCDYCYAKVHK 118 (176)
T ss_pred cccCcccCccccccccHHHHHHHHHH
Confidence 34599999999999999999987663
No 100
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=21.93 E-value=2.3e+02 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
++.+++++|+++-..++-+.=+.++++|+..
T Consensus 96 e~me~rE~le~~~~~~d~~~l~~~~~~i~~~ 126 (173)
T PRK00294 96 QQMQLREELEELQDEADLAGVATFKRRLKAA 126 (173)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 3444444444444444433333334444443
No 101
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.89 E-value=1.2e+02 Score=24.73 Aligned_cols=47 Identities=30% Similarity=0.315 Sum_probs=32.2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccccccchhhh
Q 027151 163 ADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVN 215 (227)
Q Consensus 163 ~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlGq~v~ 215 (227)
.-|++||-.|. ...+.|+++|+.-++.+..... +|....||.-|+++
T Consensus 15 ~vLKKaVieEQ-~k~~~L~e~Lk~ke~~LRk~eq-----E~dSL~FrN~QL~k 61 (102)
T PF10205_consen 15 QVLKKAVIEEQ-AKNAELKEQLKEKEQALRKLEQ-----ENDSLTFRNQQLTK 61 (102)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 56778887554 5667888888887766553333 57777788777654
No 102
>PRK10455 periplasmic protein; Reviewed
Probab=21.81 E-value=1.7e+02 Score=24.81 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcchHHHH--HHHHHHhhHhh
Q 027151 160 RLRADLQKAIDSENYALAA--DLRDQICKLEA 189 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA--~LRDeIk~Le~ 189 (227)
+.+++|..+|..+.|++|+ .+-|++..+..
T Consensus 82 ~~r~~l~~li~ad~FDeaavra~~~k~~~~~~ 113 (161)
T PRK10455 82 EERRAMHDIIASDTFDKAKAEAQITKMEAQRK 113 (161)
T ss_pred HHHHHHHHHHccCccCHHHHHHHHHHHHHHHH
Confidence 3456788889999999875 24455544443
No 103
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=21.46 E-value=2.6e+02 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
...+.++...|.++++.+||+.|+.+=.+++=+
T Consensus 123 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~ 155 (171)
T PRK05014 123 KKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFL 155 (171)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 335666777788888888998888765554433
No 104
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.33 E-value=1.3e+02 Score=22.87 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHhhhhH
Q 027151 175 ALAADLRDQICKLEAESL 192 (227)
Q Consensus 175 E~AA~LRDeIk~Le~~~~ 192 (227)
|+-|.|++||.+|+.+..
T Consensus 32 eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 32 ERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455889999999987663
No 105
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=21.12 E-value=33 Score=18.44 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=9.9
Q ss_pred cccccHHhhHHHHHHHH
Q 027151 110 QCALNMEEYDIAQQLRN 126 (227)
Q Consensus 110 GCp~CYE~F~~a~~Lr~ 126 (227)
.||.|-..|.....++.
T Consensus 2 ~C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQ 18 (24)
T ss_dssp E-SSTS-EESSHHHHHH
T ss_pred CCcCCCCcCCcHHHHHH
Confidence 57888888876555544
No 106
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.96 E-value=7.4e+02 Score=24.94 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=45.4
Q ss_pred ccCceeeccccccccccccccccHHhhHH--HHHHHHHHHHHHHHHHHHHhhhhcCCc-hhHHHhhHHhHHHHH----HH
Q 027151 92 ANEDILFFFFQLDLATRVQCALNMEEYDI--AQQLRNKLTEVEEEISRQLEAKRGLSS-KSEAQDKALSIIRLR----AD 164 (227)
Q Consensus 92 ~ne~i~cf~cqldl~tRLGCp~CYE~F~~--a~~Lr~kL~~vh~ev~~~~e~~~Gks~-~~~a~~~~~~LeeLr----~~ 164 (227)
.+..+.||.|+. .-.+|-..|..++. ...+..-++.-+..+-+. +++.-..- +...+ ...++...+ ..
T Consensus 9 ~~~~~~i~~~e~---s~~~~~~~~~~i~q~~q~~~l~~~ee~e~~~~~~-~A~~~~~~kkel~~-~~~q~~~~k~~~~~~ 83 (438)
T COG4487 9 QTKPFTIPKCED---SIKGEQARYKQIEQEDQSRILNTLEEFEKEANEK-RAQYRSAKKKELSQ-LEEQLINQKKEQKNL 83 (438)
T ss_pred cCCCeeecCccc---cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345556777765 45667777888776 333444445555554331 11111110 12211 112333333 33
Q ss_pred HHHHHhhcchHHHHHHHHHHhhHhh
Q 027151 165 LQKAIDSENYALAADLRDQICKLEA 189 (227)
Q Consensus 165 Lq~AIe~EdYE~AA~LRDeIk~Le~ 189 (227)
.+++|...+ +.+.|+|..++.
T Consensus 84 ~~eqi~~~~----~~~q~e~~~~~~ 104 (438)
T COG4487 84 FNEQIKQFE----LALQDEIAKLEA 104 (438)
T ss_pred HHHHHHHHH----HHHHHHHHHHHH
Confidence 456666655 778889888875
No 107
>PHA01748 hypothetical protein
Probab=20.78 E-value=1.9e+02 Score=20.79 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 160 RLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
+|.++|+...+.+++-....||+-|+.+-.+
T Consensus 12 el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~ 42 (60)
T PHA01748 12 DLLELLDRYAIKHGLNRSEAIRKAIEKMVKD 42 (60)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888876543
No 108
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=1.4e+02 Score=29.98 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le 188 (227)
.|+.|=++=++|-++.||++|=+|||++.++-
T Consensus 418 ~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~G 449 (464)
T COG0215 418 EIEALIEERLEARKAKNWALADEIRDELLALG 449 (464)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCC
Confidence 56777777778888899999999999998763
No 109
>PRK03636 hypothetical protein; Provisional
Probab=20.63 E-value=2.3e+02 Score=24.83 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=49.8
Q ss_pred ccccccccccccccccHHhhHHHHHHHH---HHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchH
Q 027151 99 FFFQLDLATRVQCALNMEEYDIAQQLRN---KLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYA 175 (227)
Q Consensus 99 f~cqldl~tRLGCp~CYE~F~~a~~Lr~---kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE 175 (227)
++-|+-+.+.-.||..-.+-+. ..-.+ .+.+.....+. .. -.. .....++++|..+.++|+++-|.|
T Consensus 95 iYIql~F~~~~~~~~yl~vLe~-np~~~~~~~~~~~~~~~ae-----~~---L~~-~~~~~r~~~L~~~ID~ALd~~D~e 164 (179)
T PRK03636 95 IYIQLNFREAFQSPEYVAVLEE-NPYLPKNEEVNEKDRLLAE-----QF---LEQ-SVFQFRREKLLKQIDEALDRRDKE 164 (179)
T ss_pred eEEEEecCCcccChHHHHHHhc-CCCcccchhhhhhhHHHHH-----HH---HHH-HHHHHHHHHHHHHHHHHHHcCCHH
Confidence 5678888888888775554432 00011 11111111000 00 111 123446789999999999999999
Q ss_pred HHHHHHHHHhhHhh
Q 027151 176 LAADLRDQICKLEA 189 (227)
Q Consensus 176 ~AA~LRDeIk~Le~ 189 (227)
.=-+|=++++.|++
T Consensus 165 ~F~~Ls~~l~~L~~ 178 (179)
T PRK03636 165 AFHRLSDELNQLRT 178 (179)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999874
No 110
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.52 E-value=65 Score=27.42 Aligned_cols=29 Identities=14% Similarity=-0.071 Sum_probs=24.0
Q ss_pred cccCceeecccccccccc-ccccccHHhhHH
Q 027151 91 SANEDILFFFFQLDLATR-VQCALNMEEYDI 120 (227)
Q Consensus 91 s~ne~i~cf~cqldl~tR-LGCp~CYE~F~~ 120 (227)
+..+...|+.||. +.+| +-||.|-.+++.
T Consensus 305 ~~~tS~~C~~cg~-~~~r~~~C~~cg~~~~r 334 (364)
T COG0675 305 PYYTSKTCPCCGH-LSGRLFKCPRCGFVHDR 334 (364)
T ss_pred CCCCcccccccCC-ccceeEECCCCCCeehh
Confidence 5666677999999 8664 799999998886
No 111
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.36 E-value=5.2e+02 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=8.9
Q ss_pred hHHhHHHHHHHHHH
Q 027151 154 KALSIIRLRADLQK 167 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~ 167 (227)
.+.++++|+++|++
T Consensus 159 ~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 159 LSEEIEKLKKELEK 172 (192)
T ss_pred hHHHHHHHHHHHHH
Confidence 34466677777766
No 112
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.19 E-value=99 Score=24.36 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=6.2
Q ss_pred HHHHHHhhHh
Q 027151 179 DLRDQICKLE 188 (227)
Q Consensus 179 ~LRDeIk~Le 188 (227)
.||++++.++
T Consensus 55 rL~ee~rrl~ 64 (86)
T PF12711_consen 55 RLREELRRLQ 64 (86)
T ss_pred HHHHHHHHHH
Confidence 5666666665
Done!