Query 027151
Match_columns 227
No_of_seqs 154 out of 392
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e52_A Excinuclease ABC subuni 98.4 1.5E-07 5.2E-12 68.1 4.1 36 156-191 24-59 (63)
2 2d7d_A Uvrabc system protein B 97.4 8.5E-05 2.9E-09 71.2 4.0 35 156-190 626-660 (661)
3 1c4o_A DNA nucleotide excision 97.1 7.3E-05 2.5E-09 71.7 0.0 36 156-191 611-646 (664)
4 3pxg_A Negative regulator of g 92.7 0.35 1.2E-05 44.1 8.1 40 155-194 400-439 (468)
5 2fzt_A Hypothetical protein TM 79.0 2.1 7.1E-05 32.3 3.9 28 156-183 2-29 (79)
6 3he5_B Synzip2; heterodimeric 75.1 11 0.00038 26.0 6.4 27 157-191 21-47 (52)
7 1fpo_A HSC20, chaperone protei 66.3 24 0.00083 28.5 7.8 32 156-187 123-154 (171)
8 2pih_A Protein YMCA; regulate 64.9 24 0.00082 28.1 7.4 76 116-192 8-83 (151)
9 3lay_A Zinc resistance-associa 63.0 29 0.001 28.8 7.8 37 157-193 93-131 (175)
10 3pxi_A Negative regulator of g 62.6 9.4 0.00032 36.5 5.4 39 155-193 400-438 (758)
11 3hho_A CO-chaperone protein HS 61.4 16 0.00054 29.6 5.8 31 155-185 126-156 (174)
12 2lf0_A Uncharacterized protein 60.5 10 0.00035 30.6 4.4 46 151-196 12-57 (123)
13 1gp8_A Protein (scaffolding pr 57.8 12 0.0004 25.1 3.6 32 156-187 8-39 (40)
14 3v1a_A Computational design, M 51.4 26 0.00089 24.0 4.6 37 157-193 9-45 (48)
15 3uo3_A J-type CO-chaperone JAC 47.2 46 0.0016 27.2 6.4 34 155-188 131-164 (181)
16 1llm_C Chimera of ZIF23-GCN4; 46.1 14 0.00048 24.7 2.6 40 95-134 31-84 (88)
17 2cot_A Zinc finger protein 435 43.3 9 0.00031 25.0 1.3 41 85-125 8-63 (77)
18 4a4z_A Antiviral helicase SKI2 42.0 12 0.00041 37.8 2.5 58 157-217 555-618 (997)
19 3sja_C Golgi to ER traffic pro 41.8 47 0.0016 24.0 5.0 47 156-203 13-59 (65)
20 3sjb_C Golgi to ER traffic pro 41.2 36 0.0012 26.2 4.5 57 154-211 28-84 (93)
21 3vlc_E Golgi to ER traffic pro 39.9 28 0.00096 26.8 3.7 53 154-207 35-87 (94)
22 3o39_A Periplasmic protein rel 39.7 35 0.0012 26.2 4.3 45 161-206 44-88 (108)
23 1pjr_A PCRA; DNA repair, DNA r 39.6 6.2 0.00021 37.8 0.0 19 207-226 672-690 (724)
24 3siq_A Apoptosis 1 inhibitor; 39.0 10 0.00035 30.8 1.2 25 68-107 58-82 (136)
25 1yzm_A FYVE-finger-containing 39.0 60 0.0021 22.4 4.9 36 157-192 10-45 (51)
26 3mjh_B Early endosome antigen 38.5 6 0.00021 25.3 -0.2 24 109-132 6-29 (34)
27 3syn_E ATP-binding protein YLX 37.6 19 0.00065 21.3 1.9 18 171-188 3-20 (23)
28 3oeo_A Spheroplast protein Y; 37.3 30 0.001 27.2 3.7 46 160-206 59-104 (138)
29 1dxs_A P53-like transcription 37.0 9.7 0.00033 28.7 0.7 16 105-120 12-27 (80)
30 1qvr_A CLPB protein; coiled co 36.8 83 0.0028 30.7 7.4 36 157-192 469-505 (854)
31 2p06_A Hypothetical protein AF 35.0 1.1E+02 0.0038 23.7 6.4 22 163-187 70-91 (114)
32 1se0_A Apoptosis 1 inhibitor; 34.9 13 0.00045 29.0 1.2 25 68-107 36-60 (116)
33 2lv2_A Insulinoma-associated p 34.6 12 0.00042 26.6 0.9 40 93-132 26-80 (85)
34 1z0k_B FYVE-finger-containing 33.6 74 0.0025 23.2 4.9 36 157-192 28-63 (69)
35 3m1d_A Baculoviral IAP repeat- 33.4 15 0.00051 27.0 1.2 25 68-107 34-58 (85)
36 1g73_C Inhibitors of apoptosis 32.5 15 0.00051 28.8 1.2 25 68-107 48-72 (121)
37 1jd5_A DIAP1, apoptosis 1 inhi 32.5 15 0.00051 29.1 1.2 25 68-107 48-72 (124)
38 1ez3_A Syntaxin-1A; three heli 32.5 1.5E+02 0.005 21.7 7.6 66 118-192 11-78 (127)
39 3hd7_A Vesicle-associated memb 31.4 1.3E+02 0.0043 22.1 6.1 46 157-202 6-53 (91)
40 3itf_A Periplasmic adaptor pro 30.5 63 0.0022 25.9 4.6 52 161-213 72-124 (145)
41 3hl5_A Baculoviral IAP repeat- 30.1 18 0.00062 27.0 1.2 25 68-107 34-58 (95)
42 2gr7_A Adhesin; trimeric autot 29.9 44 0.0015 26.5 3.5 35 179-213 43-77 (129)
43 2poi_A Baculoviral IAP repeat- 29.0 19 0.00066 27.0 1.2 15 93-107 53-67 (94)
44 2d2s_A Exocyst complex compone 28.5 85 0.0029 26.5 5.3 33 156-188 16-48 (235)
45 2l5g_B Putative uncharacterize 28.1 1.3E+02 0.0043 20.2 4.9 29 123-167 6-34 (42)
46 4dvc_A Thiol:disulfide interch 28.0 26 0.00088 26.1 1.8 11 109-119 31-41 (184)
47 1z0j_B FYVE-finger-containing 27.9 1.1E+02 0.0036 21.8 4.8 36 157-192 17-52 (59)
48 2a3d_A Protein (de novo three- 27.9 1.6E+02 0.0056 21.3 5.9 34 154-187 31-70 (73)
49 3d9t_A Baculoviral IAP repeat- 27.6 21 0.00072 26.7 1.2 14 94-107 47-60 (97)
50 2gr8_A Adhesin; trimeric autot 27.5 28 0.00096 26.5 1.9 41 173-213 7-47 (99)
51 2qra_D XIAP, baculoviral IAP r 27.4 21 0.00072 27.8 1.2 15 93-107 70-84 (111)
52 1wjt_A Transcription elongatio 26.8 34 0.0012 26.1 2.2 32 155-186 11-42 (103)
53 3feu_A Putative lipoprotein; a 26.7 25 0.00086 27.6 1.6 20 109-128 32-51 (185)
54 4aj5_A SKA1, spindle and kinet 26.4 93 0.0032 23.9 4.6 15 124-138 49-63 (91)
55 1z6m_A Conserved hypothetical 26.4 33 0.0011 25.8 2.1 19 109-130 37-55 (175)
56 2vm5_A Baculoviral IAP repeat- 26.3 23 0.00077 27.1 1.2 15 93-107 54-68 (106)
57 3bci_A Disulfide bond protein 26.3 31 0.001 26.4 2.0 17 109-128 21-37 (186)
58 3mq7_A Bone marrow stromal ant 26.3 2.5E+02 0.0086 22.5 10.4 40 157-197 54-93 (121)
59 3c7m_A Thiol:disulfide interch 26.2 26 0.00088 26.5 1.5 12 109-120 27-38 (195)
60 2ee8_A Protein ODD-skipped-rel 25.9 28 0.00094 23.7 1.5 32 93-124 15-61 (106)
61 2qfa_A Baculoviral IAP repeat- 25.4 25 0.00084 28.0 1.3 15 93-107 52-66 (142)
62 1g6u_A Domain swapped dimer; d 24.8 1.5E+02 0.0053 20.0 5.0 32 160-192 4-37 (48)
63 3t7k_A RTT107, regulator of TY 24.4 19 0.00066 32.0 0.5 16 38-53 222-237 (256)
64 3mup_A Baculoviral IAP repeat- 24.2 26 0.00089 27.5 1.2 15 93-107 52-66 (122)
65 3hho_A CO-chaperone protein HS 24.1 1.5E+02 0.005 23.8 5.7 47 154-200 94-141 (174)
66 3myf_A Sensor protein; HPT, hi 24.0 2.3E+02 0.0078 21.2 7.0 35 158-192 71-110 (119)
67 1x5w_A Zinc finger protein 64, 23.6 20 0.00069 22.8 0.4 34 93-126 7-55 (70)
68 1rpq_W Peptide E131; receptor- 23.2 22 0.00076 21.5 0.5 8 109-116 1-9 (26)
69 2i3h_A Baculoviral IAP repeat- 23.0 28 0.00095 28.0 1.2 15 93-107 80-94 (133)
70 2dlq_A GLI-kruppel family memb 22.1 24 0.0008 24.4 0.5 35 94-128 65-114 (124)
71 1bb1_A Designed, thermostable 21.8 67 0.0023 20.6 2.6 15 173-188 8-22 (36)
72 1i4o_C X-linked IAP, baculovir 21.7 30 0.001 27.9 1.1 15 93-107 76-90 (141)
73 2vxg_A LD41624, GE-1, CG6181-P 21.4 54 0.0018 26.2 2.6 20 160-179 2-21 (139)
74 3ra3_B P2F; coiled coil domain 21.3 82 0.0028 19.3 2.8 21 158-178 5-25 (28)
75 2ct1_A Transcriptional repress 21.3 36 0.0012 22.0 1.3 33 94-126 14-63 (77)
76 3uk3_C Zinc finger protein 217 21.0 23 0.00078 21.4 0.2 12 109-120 33-44 (57)
77 3onj_A T-snare VTI1; helix, HA 20.4 1.2E+02 0.0041 22.4 4.1 9 126-134 48-56 (97)
78 1fpo_A HSC20, chaperone protei 20.4 2.4E+02 0.0082 22.5 6.3 46 154-199 91-136 (171)
79 2lme_A Adhesin YADA; trimeric 20.4 91 0.0031 23.4 3.5 33 179-211 20-52 (105)
80 4a17_Y RPL37A, 60S ribosomal p 20.3 58 0.002 25.4 2.5 27 93-119 34-65 (103)
81 2yt9_A Zinc finger-containing 20.0 26 0.00088 23.3 0.3 33 93-125 5-52 (95)
No 1
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=98.44 E-value=1.5e-07 Score=68.07 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
..|.+|+++|++|+++++||+||+|||+|+.|+.+.
T Consensus 24 ~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 24 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999998653
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.41 E-value=8.5e-05 Score=71.19 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~ 190 (227)
..|.+|+++|++|.+++|||+||+|||+|+.|+.+
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999754
No 3
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.11 E-value=7.3e-05 Score=71.70 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
..|.+|+++|++|+++++||+||+|||+|+.|++++
T Consensus 611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 611 ERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999998764
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.69 E-value=0.35 Score=44.09 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHh
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~ 194 (227)
+..|++|+.+++.+|..+|||+|++|++++.+++++.+..
T Consensus 400 ~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 439 (468)
T 3pxg_A 400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT 439 (468)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999999999999999999877643
No 5
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=78.96 E-value=2.1 Score=32.32 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQ 183 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDe 183 (227)
++|.+++++.++||+.||||.--.|=++
T Consensus 2 ~~I~EIEk~ID~aIE~edyE~L~~LL~k 29 (79)
T 2fzt_A 2 MNIDEIERKIDEAIEKEDYETLLSLLNK 29 (79)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899999999999999987766444
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=75.07 E-value=11 Score=26.01 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~ 191 (227)
+|++-+..|++.| |.|||||.+|+.+.
T Consensus 21 qlerdeqnlekii--------anlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKII--------ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHH--------HHHHHHHHHHHHHH
Confidence 4555555666665 56999999998653
No 7
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=66.32 E-value=24 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
..+..+.++|..+++.+||+.|+.+=.+++=+
T Consensus 123 ~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~ 154 (171)
T 1fpo_A 123 KMFDTRHQLMVEQLDNETWDAAADTCRKLRFL 154 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 35667788888999999999998664444433
No 8
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=64.88 E-value=24 Score=28.08 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=44.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 116 EEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 116 E~F~~a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
+.|+.|.+|.+.|.+.+.= ..-++++.--...++++..-.+...++.+++..-...+|+...+..++|.+++.++.
T Consensus 8 ~I~d~A~eL~~aI~eseey-k~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 8 DIVQQARNLAKMISETEEV-DFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp HHHHHHHHHHHHHTTBHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 4566777888888775533 222232222122333333434566777777777777777666666677777765553
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.01 E-value=29 Score=28.80 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhhcchHHH--HHHHHHHhhHhhhhHH
Q 027151 157 SIIRLRADLQKAIDSENYALA--ADLRDQICKLEAESLA 193 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~A--A~LRDeIk~Le~~~~a 193 (227)
++..++.+|+..+..++|++| ..|-+||.+|+.+...
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999988755 4677788877766543
No 10
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.64 E-value=9.4 Score=36.47 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHH
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a 193 (227)
+..++.|+.+.+.++..++|+.|+.+++++..++.+.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 438 (758)
T 3pxi_A 400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVED 438 (758)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999999998866543
No 11
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=61.42 E-value=16 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHh
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQIC 185 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk 185 (227)
...+.++..+|.++++.+||+.|+.+=.+++
T Consensus 126 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 156 (174)
T 3hho_A 126 TAMQRHYLAQLQGQLAQSEWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3457788889999999999999986544433
No 12
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=60.47 E-value=10 Score=30.63 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=38.0
Q ss_pred HHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHH
Q 027151 151 AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196 (227)
Q Consensus 151 a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a 196 (227)
-+.-...|+.++.+|..|+..+|-|.-+++.|||..|..++.....
T Consensus 12 iq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 12 IKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334457899999999999999999999999999999887764433
No 13
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=57.84 E-value=12 Score=25.06 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
.+|+.+++++.-|-.+.|||.+-.|--+++.|
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 36889999999999999999998777766544
No 14
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=51.40 E-value=26 Score=24.02 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a 193 (227)
++..++..+++|-..-.||+.+.|..-+++|+.+...
T Consensus 9 Q~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 9 QIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999877653
No 15
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=47.21 E-value=46 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHh
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le 188 (227)
...+.++.++|.++++.+||+.|+.+=.+++=+.
T Consensus 131 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~ 164 (181)
T 3uo3_A 131 KERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWY 164 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3457778888899999999999887666555543
No 16
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=46.10 E-value=14 Score=24.70 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=31.6
Q ss_pred ceeeccccccccc--------------cccccccHHhhHHHHHHHHHHHHHHHH
Q 027151 95 DILFFFFQLDLAT--------------RVQCALNMEEYDIAQQLRNKLTEVEEE 134 (227)
Q Consensus 95 ~i~cf~cqldl~t--------------RLGCp~CYE~F~~a~~Lr~kL~~vh~e 134 (227)
...|..|+..+.. .+.|+.|-..|.....|..=|.++|..
T Consensus 31 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~h~~ 84 (88)
T 1llm_C 31 PFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL 84 (88)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3668888887765 477999999999877888888887766
No 17
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.31 E-value=9 Score=25.02 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=27.1
Q ss_pred cccccccccCceeeccccccccc---------------cccccccHHhhHHHHHHH
Q 027151 85 SSERSESANEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLR 125 (227)
Q Consensus 85 ~~e~s~s~ne~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~Lr 125 (227)
+.+..........|.+|+..+.. .+.|+.|-..|.....|.
T Consensus 8 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~ 63 (77)
T 2cot_A 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63 (77)
T ss_dssp CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHH
T ss_pred CCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHH
Confidence 33444445566779999877764 467899988887633333
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.99 E-value=12 Score=37.80 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhh------cchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccccccchhhhhh
Q 027151 157 SIIRLRADLQKAIDS------ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHK 217 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~------EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlGq~v~h~ 217 (227)
.|.+|+++|+.+-.. +++++++++||+|++++.+..... +...+....|+.|..|.-+
T Consensus 555 ~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~l~~gr~v~~~ 618 (997)
T 4a4z_A 555 QIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEM---VKSPSILHILKEGRLVAFR 618 (997)
T ss_dssp HHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHH---TTSTTHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHhhCCCCCEEEEe
Confidence 456666666543222 589999999999999987654321 2223344588899877543
No 19
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.79 E-value=47 Score=24.01 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFEN 203 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n 203 (227)
.++.+|+.+|..-=..-+|.+=|+||-+|.+|..+++.... .|.-+|
T Consensus 13 ~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~-~l~~~~ 59 (65)
T 3sja_C 13 KERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD-EIQSEN 59 (65)
T ss_dssp HHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Confidence 36788889998888899999999999999999888776554 566555
No 20
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.20 E-value=36 Score=26.16 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=45.5
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccccccc
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLG 211 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlG 211 (227)
...++.+|+.+|..-=...+|.+=|+||-+|.++..+++.... .|+-+++.|..-+.
T Consensus 28 lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~-~l~~~k~~F~~~~~ 84 (93)
T 3sjb_C 28 KVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD-EIQSENKAFQAHLH 84 (93)
T ss_dssp HHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3347889999999888999999999999999999988876665 67778888744433
No 21
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=39.85 E-value=28 Score=26.82 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=43.1
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccc
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFA 207 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~ 207 (227)
...++.+|+.+|..-=.+.+|.+=|+||-+|.+|..+++.... .|+-+.+.|.
T Consensus 35 lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~-~L~s~ks~fd 87 (94)
T 3vlc_E 35 KVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD-EIQSENKAFQ 87 (94)
T ss_dssp HHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHH-HTTTTHHHHT
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4457889999999888999999999999999999988876655 5666666663
No 22
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=39.65 E-value=35 Score=26.21 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc
Q 027151 161 LRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF 206 (227)
Q Consensus 161 Lr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~ 206 (227)
.+++|...|..++|++|| +|+.|.+..+........-+...|..|
T Consensus 44 ~r~~m~~Li~ad~FDEaa-ar~l~~~~~~~~~e~~v~~~r~~~qmy 88 (108)
T 3o39_A 44 ERRAMHDIIASDTFDKAK-AEAQIAKMEEQRKANMLAHMETQNKIY 88 (108)
T ss_dssp HHHHHHHHHSSSSCCHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999876 788888776655555555566667666
No 23
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=39.61 E-value=6.2 Score=37.83 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=0.0
Q ss_pred ccccchhhhhhhhcCccccc
Q 027151 207 AFRLGQKVNHKIFGNNMPFI 226 (227)
Q Consensus 207 ~frlGq~v~h~~~gyr~vv~ 226 (227)
.|+.||+|.|+.||. |+|+
T Consensus 672 ~~~~g~~v~h~~fg~-g~v~ 690 (724)
T 1pjr_A 672 SWKVGDRANHRKWGI-GTVV 690 (724)
T ss_dssp --------------------
T ss_pred ccccCCEeeccCCCC-ceEE
Confidence 589999999999997 5553
No 24
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=39.03 E-value=10 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=18.4
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.|||+|.| .+..+.||+|+..|.+
T Consensus 58 A~AGFYYtG---------------~~D~V~Cf~C~~~L~~ 82 (136)
T 3siq_A 58 AQTGMYFTH---------------AGDKVKCFFCGVEIGS 82 (136)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEEEC
T ss_pred HHCCCeEcC---------------CCCeEEEeccCCEecC
Confidence 467777754 2457889999998774
No 25
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=38.97 E-value=60 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
++..++..+++|-..-.||+.+-|-.-+++|+.+..
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999887654
No 26
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.47 E-value=6 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.5
Q ss_pred ccccccHHhhHHHHHHHHHHHHHH
Q 027151 109 VQCALNMEEYDIAQQLRNKLTEVE 132 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL~~vh 132 (227)
+.||.|...|.++.+|..--+..|
T Consensus 6 FiCP~C~~~l~s~~~L~~Hye~~H 29 (34)
T 3mjh_B 6 FICPQCMKSLGSADELFKHYEAVH 29 (34)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHT
T ss_pred cCCcHHHHHcCCHHHHHHHHHhcc
Confidence 679999999988777766444433
No 27
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=37.55 E-value=19 Score=21.30 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=14.8
Q ss_pred hcchHHHHHHHHHHhhHh
Q 027151 171 SENYALAADLRDQICKLE 188 (227)
Q Consensus 171 ~EdYE~AA~LRDeIk~Le 188 (227)
...|++||.||.++.+++
T Consensus 3 mnrydqaatlrakmekre 20 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRE 20 (26)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 357999999999887765
No 28
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=37.27 E-value=30 Score=27.18 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhccc
Q 027151 160 RLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF 206 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~ 206 (227)
+.+.+|..+|..++|.+|+ +|..|.++..........-+.+.|..|
T Consensus 59 ~~r~~l~~Li~a~~fDeaa-v~al~~~~~~~~~e~~~~~~~~~~~~~ 104 (138)
T 3oeo_A 59 EERRAMHDIITSDTFDKVK-AEAQIAKMEEQRKANMLAHMETQNKIY 104 (138)
T ss_dssp THHHHHHHHHTCSSCCHHH-HHHHHGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558899999999999887 555555443322333333344455555
No 29
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=37.05 E-value=9.7 Score=28.75 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.9
Q ss_pred ccccccccccHHhhHH
Q 027151 105 LATRVQCALNMEEYDI 120 (227)
Q Consensus 105 l~tRLGCp~CYE~F~~ 120 (227)
+-++||||-|.+.|..
T Consensus 12 ~Lt~LGc~~~Id~F~~ 27 (80)
T 1dxs_A 12 FLTGLGCPNCIEYFTS 27 (80)
T ss_dssp HHHHTTCTTSHHHHHT
T ss_pred HHHhcCchHHHHHHHH
Confidence 3469999999999996
No 30
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.81 E-value=83 Score=30.66 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHH-HHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLR-DQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LR-DeIk~Le~~~~ 192 (227)
++++++.+++.+-...||++|++++ ++|..+++++.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (854)
T 1qvr_A 469 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVE 505 (854)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHH
Confidence 4556667778888889999999988 56666655543
No 31
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=34.98 E-value=1.1e+02 Score=23.73 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=17.5
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhhH
Q 027151 163 ADLQKAIDSENYALAADLRDQICKL 187 (227)
Q Consensus 163 ~~Lq~AIe~EdYE~AA~LRDeIk~L 187 (227)
.+|.+||+.||+| .|||++-..
T Consensus 70 delreavekedwe---nlrdelldv 91 (114)
T 2p06_A 70 DELREAVEKEDWE---NLRDELLDV 91 (114)
T ss_dssp HHHHHHHHTTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 4678899999998 488987544
No 32
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=34.91 E-value=13 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=18.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||++|.|. +..+.||+|+..|..
T Consensus 36 A~AGFyy~g~---------------~D~V~Cf~C~~~L~~ 60 (116)
T 1se0_A 36 AQTGMYFTHA---------------GDKVKCFFCGVEIGS 60 (116)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEES
T ss_pred HHcCCcCcCC---------------CCEEEecCcCCEecC
Confidence 5677777542 456889999998864
No 33
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=34.60 E-value=12 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=29.2
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHHHHHHHHHHHHHH
Q 027151 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRNKLTEVE 132 (227)
Q Consensus 93 ne~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~Lr~kL~~vh 132 (227)
.+.-.|++|+-.|.. ...|+.|-..|.....|..=+..+|
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H 80 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence 344679999998877 5789999999987556655444444
No 34
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=33.64 E-value=74 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
++..++..+++|-+.-.||+.+-|-.-+++|+.+..
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999998887654
No 35
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=33.36 E-value=15 Score=27.01 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=18.6
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||+++.| .+..+.||+|+..|.+
T Consensus 34 A~AGFyy~g---------------~~D~v~Cf~C~~~l~~ 58 (85)
T 3m1d_A 34 ARAGFYYTG---------------VNDKVKCFCCGLMLDN 58 (85)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEECS
T ss_pred HHCCCeEeC---------------CCCEEEeCCcCCEecC
Confidence 567777754 2467889999998865
No 36
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=32.54 E-value=15 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||++|.|. ...+.||+|+..|.+
T Consensus 48 A~AGFyy~g~---------------~D~V~Cf~C~~~L~~ 72 (121)
T 1g73_C 48 ARAGFYALGE---------------GDKVKCFHCGGGLTD 72 (121)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEES
T ss_pred HHcCCCCcCC---------------CCEEEcCcCCCCcCC
Confidence 5677777542 346889999998865
No 37
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=32.53 E-value=15 Score=29.10 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.3
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||+++.|. +..+.||+|+..|.+
T Consensus 48 A~AGFyYtg~---------------~D~V~Cf~C~~~L~~ 72 (124)
T 1jd5_A 48 AEAGFFYTGV---------------GDRVRCFSCGGGLMD 72 (124)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEEC
T ss_pred HHcCCCCcCC---------------CCEEEecCCCCEecC
Confidence 5688888653 357889999998865
No 38
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=32.52 E-value=1.5e+02 Score=21.75 Aligned_cols=66 Identities=11% Similarity=0.261 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcC--CchhHHHhhHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 118 YDIAQQLRNKLTEVEEEISRQLEAKRGL--SSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 118 F~~a~~Lr~kL~~vh~ev~~~~e~~~Gk--s~~~~a~~~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
|+..+.|+.-|..+..-+......|.-. +.. ....++.+|+..+. |==-.|-.|++.|+.|+....
T Consensus 11 ~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--------~~~~~~~~l~~l~~-~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 11 FEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--------PDEKTKEELEELMS-DIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4446777777777777766644444322 111 12245566655553 334678899999999986554
No 39
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=31.39 E-value=1.3e+02 Score=22.08 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHH--HhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhh
Q 027151 157 SIIRLRADLQKA--IDSENYALAADLRDQICKLEAESLAASATALAFE 202 (227)
Q Consensus 157 ~LeeLr~~Lq~A--Ie~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~ 202 (227)
.|.+++.++++. |-.+|.|+..+=-++|..|..+.+.-+..|-.|.
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~ 53 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 355666666655 5667777777777777777766655555544444
No 40
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=30.51 E-value=63 Score=25.93 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccc-cccchh
Q 027151 161 LRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFA-FRLGQK 213 (227)
Q Consensus 161 Lr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~-frlGq~ 213 (227)
.+++|...|..++|++|+ +|..|.++........+.=+.+.|..|. +-+-|+
T Consensus 72 ~r~~l~~Li~ad~fDeaa-~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk 124 (145)
T 3itf_A 72 ELETMHRLVTAENFDENA-VRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQ 124 (145)
T ss_dssp HHHHHHHHHTCSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 456899999999998865 5666666554444444445555666663 444443
No 41
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=30.10 E-value=18 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred eccccccccCCCCCCCccccccccccCceeeccccccccc
Q 027151 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (227)
Q Consensus 68 ~~a~w~f~~~~~~~~~~~~e~s~s~ne~i~cf~cqldl~t 107 (227)
+.||+++.| .+..+.||+|+..|..
T Consensus 34 A~AGFyy~g---------------~~D~v~Cf~C~~~l~~ 58 (95)
T 3hl5_A 34 ARAGFYALG---------------EGDKVKCFHCGGGLTD 58 (95)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEECC
T ss_pred HhCCCeEcC---------------CCCeEEecCCCCCccC
Confidence 567777754 2457889999998865
No 42
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=29.95 E-value=44 Score=26.48 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHhhHhhhhHHhHHHHHHhhhcccccccchh
Q 027151 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQK 213 (227)
Q Consensus 179 ~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlGq~ 213 (227)
.|.++|.+++++..+-.|.|+|-+|-.+.+.+|..
T Consensus 43 ~L~~~I~~~~k~a~aGiA~A~A~A~LPq~~~pGk~ 77 (129)
T 2gr7_A 43 NLEGKVNKVGKRADAGTASALAASQLPQATMPGKS 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCE
Confidence 57889999999999999999999999888887764
No 43
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=29.03 E-value=19 Score=26.96 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=11.9
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|.+
T Consensus 53 ~D~V~Cf~C~~~l~~ 67 (94)
T 2poi_A 53 GDTVRCFSCHAAVDR 67 (94)
T ss_dssp TTCEEETTTCCEECC
T ss_pred CCEEEcccCCCEeCC
Confidence 356889999998755
No 44
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.48 E-value=85 Score=26.55 Aligned_cols=33 Identities=6% Similarity=-0.093 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHh
Q 027151 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (227)
Q Consensus 156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le 188 (227)
..++++=.+|+-.|+..+||+|..+=+++++.=
T Consensus 16 ~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l 48 (235)
T 2d2s_A 16 KFLDEGVEEIDIELARLRFESAVETLLDIESQL 48 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 346666678888888899998888877777653
No 45
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.06 E-value=1.3e+02 Score=20.25 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhHHHhhHHhHHHHHHHHHH
Q 027151 123 QLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQK 167 (227)
Q Consensus 123 ~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a~~~~~~LeeLr~~Lq~ 167 (227)
+|..++.+|..++.+ .+..|.+|+.+|.+
T Consensus 6 ~l~qkI~kVdrEI~K----------------te~kI~~lqkKlke 34 (42)
T 2l5g_B 6 ELIQNMDRVDREITM----------------VEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 677888888888765 22246677766654
No 46
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=27.99 E-value=26 Score=26.07 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=8.4
Q ss_pred ccccccHHhhH
Q 027151 109 VQCALNMEEYD 119 (227)
Q Consensus 109 LGCp~CYE~F~ 119 (227)
++||.|+....
T Consensus 31 y~Cp~C~~~~~ 41 (184)
T 4dvc_A 31 FYCPHCNTFEP 41 (184)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHhHHHHhH
Confidence 59999987543
No 47
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=27.95 E-value=1.1e+02 Score=21.83 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~ 192 (227)
++..++..+++|-..-.|++.+-|-.-++.|+.+..
T Consensus 17 Qi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 17 QIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999986653
No 48
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=27.91 E-value=1.6e+02 Score=21.27 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=21.8
Q ss_pred hHHhHHHHHHHHHHHHhhcch------HHHHHHHHHHhhH
Q 027151 154 KALSIIRLRADLQKAIDSENY------ALAADLRDQICKL 187 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdY------E~AA~LRDeIk~L 187 (227)
.+.+|...+.+|+..--..+- .+||.|||++..-
T Consensus 31 fekeiaafeselqaykgkgnpevealrkeaaairdelqay 70 (73)
T 2a3d_A 31 FEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAY 70 (73)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHh
Confidence 344677778888754333332 2588899998653
No 49
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=27.56 E-value=21 Score=26.68 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.6
Q ss_pred Cceeeccccccccc
Q 027151 94 EDILFFFFQLDLAT 107 (227)
Q Consensus 94 e~i~cf~cqldl~t 107 (227)
..+.||+|+..|..
T Consensus 47 D~v~Cf~C~~~l~~ 60 (97)
T 3d9t_A 47 DDVKCFCCDGGLRC 60 (97)
T ss_dssp TCEEETTTCCEEEC
T ss_pred CEEEecCcCCEecC
Confidence 46889999998865
No 50
>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion, microbial pathogenesis, membrane protein; 2.00A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=27.47 E-value=28 Score=26.53 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHhhHhhhhHHhHHHHHHhhhcccccccchh
Q 027151 173 NYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQK 213 (227)
Q Consensus 173 dYE~AA~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlGq~ 213 (227)
.||+=-.|.++|++++++..+-.|.|+|-.|-.+...+|..
T Consensus 7 ~~~k~~~l~~~I~~~~k~a~aGiA~A~A~a~lpq~~~pGk~ 47 (99)
T 2gr8_A 7 QFEKSGGGGGLVPRGSKRADAGTASALAASQLPQATMPGKS 47 (99)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCCCCCSTTCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcE
Confidence 45666678999999999999999999999999888777753
No 51
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=27.39 E-value=21 Score=27.78 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=12.0
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|.+
T Consensus 70 ~D~V~Cf~C~~~L~~ 84 (111)
T 2qra_D 70 GDTVRCFSCHAAVDR 84 (111)
T ss_dssp TTCEEETTTCCEECC
T ss_pred CCEEEcccCCCEeCC
Confidence 456889999998755
No 52
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=26.79 E-value=34 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhh
Q 027151 155 ALSIIRLRADLQKAIDSENYALAADLRDQICK 186 (227)
Q Consensus 155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~ 186 (227)
+.+|.++.+.|++++.++++|.+..+=.+++.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~ 42 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 44788999999999998888776555444443
No 53
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=26.66 E-value=25 Score=27.58 Aligned_cols=20 Identities=5% Similarity=0.142 Sum_probs=15.2
Q ss_pred ccccccHHhhHHHHHHHHHH
Q 027151 109 VQCALNMEEYDIAQQLRNKL 128 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL 128 (227)
.+||.|+.......+|.+.+
T Consensus 32 ~~Cp~C~~~~~~~~~~~~~~ 51 (185)
T 3feu_A 32 LSCGHCRNMENFLPVISQEA 51 (185)
T ss_dssp TTCHHHHHHGGGHHHHHHHH
T ss_pred CCChhHHHhhHHHHHHHHHh
Confidence 49999999887666666655
No 54
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.39 E-value=93 Score=23.90 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027151 124 LRNKLTEVEEEISRQ 138 (227)
Q Consensus 124 Lr~kL~~vh~ev~~~ 138 (227)
|-+.|.+.+.+|++|
T Consensus 49 l~eLLn~~E~eV~~Q 63 (91)
T 4aj5_A 49 INELLNKLELEIQYQ 63 (91)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666664
No 55
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=26.37 E-value=33 Score=25.78 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=13.4
Q ss_pred ccccccHHhhHHHHHHHHHHHH
Q 027151 109 VQCALNMEEYDIAQQLRNKLTE 130 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL~~ 130 (227)
..||.||.... .|.+.+++
T Consensus 37 ~~Cp~C~~~~~---~~~~~~~~ 55 (175)
T 1z6m_A 37 VRCPYCRKWFE---ESEELLAQ 55 (175)
T ss_dssp TTCHHHHHHHH---HHHHHHHH
T ss_pred CCCcchHHHHH---HHHHHHHH
Confidence 48999999887 45554444
No 56
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=26.28 E-value=23 Score=27.12 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=11.9
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|.+
T Consensus 54 ~D~V~Cf~C~~~L~~ 68 (106)
T 2vm5_A 54 QDTVQCFSCGGCLGN 68 (106)
T ss_dssp TTCEEETTTCCEEES
T ss_pred CCEEEccccCCEecC
Confidence 346889999998865
No 57
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=26.27 E-value=31 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=12.5
Q ss_pred ccccccHHhhHHHHHHHHHH
Q 027151 109 VQCALNMEEYDIAQQLRNKL 128 (227)
Q Consensus 109 LGCp~CYE~F~~a~~Lr~kL 128 (227)
+.||.||.... .|.+.|
T Consensus 21 ~~Cp~C~~~~~---~l~~~l 37 (186)
T 3bci_A 21 YKCPYCKELDE---KVMPKL 37 (186)
T ss_dssp TTCHHHHHHHH---HHHHHH
T ss_pred CCChhHHHHHH---HHHHHH
Confidence 48999999888 454444
No 58
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.26 E-value=2.5e+02 Score=22.49 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHH
Q 027151 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASAT 197 (227)
Q Consensus 157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~ 197 (227)
....|+.-|++-.... -++-.+|++||+.|.+++..++++
T Consensus 54 TV~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 54 TVMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666544444 445678999999999888766664
No 59
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=26.23 E-value=26 Score=26.51 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=9.9
Q ss_pred ccccccHHhhHH
Q 027151 109 VQCALNMEEYDI 120 (227)
Q Consensus 109 LGCp~CYE~F~~ 120 (227)
+.||.||.....
T Consensus 27 ~~CP~C~~~~~~ 38 (195)
T 3c7m_A 27 YACPFCYKYDKA 38 (195)
T ss_dssp TTCHHHHHHHHH
T ss_pred CcCcchhhCcHH
Confidence 699999987663
No 60
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=25.90 E-value=28 Score=23.69 Aligned_cols=32 Identities=9% Similarity=0.302 Sum_probs=22.9
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHHHHHH
Q 027151 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQL 124 (227)
Q Consensus 93 ne~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~L 124 (227)
.....|.+|+..+.. ...|+.|-..|.....|
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 61 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHH
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHH
Confidence 345679999887765 47899999988863333
No 61
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=25.40 E-value=25 Score=28.02 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=12.0
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
...+.||+|+..|.+
T Consensus 52 ~D~V~Cf~C~~~L~~ 66 (142)
T 2qfa_A 52 PDLAQCFFCFKELEG 66 (142)
T ss_dssp TTCEEETTTCCEECC
T ss_pred CCEEEcCCCCCEecc
Confidence 356889999998875
No 62
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.82 E-value=1.5e+02 Score=19.96 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcch--HHHHHHHHHHhhHhhhhH
Q 027151 160 RLRADLQKAIDSENY--ALAADLRDQICKLEAESL 192 (227)
Q Consensus 160 eLr~~Lq~AIe~EdY--E~AA~LRDeIk~Le~~~~ 192 (227)
.|+.+|+ |+..|-| |+-|.|-.|+..|+++..
T Consensus 4 alkselq-alkkegfspeelaaleselqalekkla 37 (48)
T 1g6u_A 4 ALKSELQ-ALKKEGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp HHHHHHH-HHHHTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555554 4555555 556666777777765543
No 63
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=24.44 E-value=19 Score=32.03 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=13.3
Q ss_pred cCCchhhhhhhhhhhh
Q 027151 38 GIDRPCFCHQFVQGLH 53 (227)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (227)
.++-..-|+|||++.|
T Consensus 222 ~~~lvveWdWCVksIF 237 (256)
T 3t7k_A 222 ETILIVEWNWCVESIF 237 (256)
T ss_dssp SCEEEECHHHHHHHHH
T ss_pred ceEEEEEcHHHHHHHh
Confidence 4566778999999988
No 64
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=24.25 E-value=26 Score=27.55 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=12.3
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|.+
T Consensus 52 ~D~V~Cf~C~~~L~~ 66 (122)
T 3mup_A 52 NDDVKCFCCDGGLRC 66 (122)
T ss_dssp TTCEEETTTCCEECC
T ss_pred CCeEEecCcCCEecC
Confidence 457889999998865
No 65
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=24.08 E-value=1.5e+02 Score=23.81 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=31.3
Q ss_pred hHHhHHHHHHHHHHHHhhcc-hHHHHHHHHHHhhHhhhhHHhHHHHHH
Q 027151 154 KALSIIRLRADLQKAIDSEN-YALAADLRDQICKLEAESLAASATALA 200 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~Ed-YE~AA~LRDeIk~Le~~~~a~~a~Al~ 200 (227)
.-++..+++++|+++-..+| -+.-..|..+|+....+....-..++.
T Consensus 94 fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 141 (174)
T 3hho_A 94 FLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLA 141 (174)
T ss_dssp HHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578889999999988777 444456677776666555544444443
No 66
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=23.98 E-value=2.3e+02 Score=21.16 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhcch-----HHHHHHHHHHhhHhhhhH
Q 027151 158 IIRLRADLQKAIDSENY-----ALAADLRDQICKLEAESL 192 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdY-----E~AA~LRDeIk~Le~~~~ 192 (227)
|..+=..|+.+...+.- +....|.|+|..+.....
T Consensus 71 L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~ 110 (119)
T 3myf_A 71 TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVK 110 (119)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888777653 456778888877765443
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.61 E-value=20 Score=22.82 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=23.8
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHHHHHHHH
Q 027151 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRN 126 (227)
Q Consensus 93 ne~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~Lr~ 126 (227)
.....|..|+..+.. .+.|+.|-..|.....|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~ 55 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK 55 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHH
Confidence 345678888876654 4789999999986444444
No 68
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=23.18 E-value=22 Score=21.53 Aligned_cols=8 Identities=50% Similarity=0.733 Sum_probs=4.7
Q ss_pred ccccc-cHH
Q 027151 109 VQCAL-NME 116 (227)
Q Consensus 109 LGCp~-CYE 116 (227)
+|||+ |||
T Consensus 1 vqcphfcye 9 (26)
T 1rpq_W 1 VQCPHFCYE 9 (26)
T ss_dssp CCCCTHHHH
T ss_pred CCCCeeeee
Confidence 46765 665
No 69
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=23.04 E-value=28 Score=27.97 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.3
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|..
T Consensus 80 ~D~V~Cf~C~~~L~~ 94 (133)
T 2i3h_A 80 QDKVRCFFCYGGLQS 94 (133)
T ss_dssp TTCEEETTTCCEEEC
T ss_pred CCEEEecccCCEeCC
Confidence 456899999998865
No 70
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.10 E-value=24 Score=24.41 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=25.3
Q ss_pred Cceeeccccccccc---------------cccccccHHhhHHHHHHHHHH
Q 027151 94 EDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRNKL 128 (227)
Q Consensus 94 e~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~Lr~kL 128 (227)
....|.+|+..+.. .+.|+.|-..|.....|..=+
T Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 114 (124)
T 2dlq_A 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114 (124)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHH
Confidence 34679999887765 478999999998755555433
No 71
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=21.76 E-value=67 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHhhHh
Q 027151 173 NYALAADLRDQICKLE 188 (227)
Q Consensus 173 dYE~AA~LRDeIk~Le 188 (227)
+||+|| |.+||..++
T Consensus 8 eyeqaa-ikeeiaaik 22 (36)
T 1bb1_A 8 EYEQAA-IKEEIAAIK 22 (36)
T ss_dssp HHHHHH-HHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH
Confidence 466654 344444444
No 72
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=21.73 E-value=30 Score=27.91 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=11.8
Q ss_pred cCceeeccccccccc
Q 027151 93 NEDILFFFFQLDLAT 107 (227)
Q Consensus 93 ne~i~cf~cqldl~t 107 (227)
+..+.||+|+..|.+
T Consensus 76 ~D~V~Cf~C~~~L~~ 90 (141)
T 1i4o_C 76 GDQVQCFCCGGKLKN 90 (141)
T ss_pred CCEEEeccCCCEecC
Confidence 356889999998755
No 73
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=21.41 E-value=54 Score=26.16 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcchHHHHH
Q 027151 160 RLRADLQKAIDSENYALAAD 179 (227)
Q Consensus 160 eLr~~Lq~AIe~EdYE~AA~ 179 (227)
++++++.+.|.+.+||+|..
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~ 21 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFH 21 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHCCCHHHHHH
Confidence 46788999999999999984
No 74
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.35 E-value=82 Score=19.30 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhcchHHHH
Q 027151 158 IIRLRADLQKAIDSENYALAA 178 (227)
Q Consensus 158 LeeLr~~Lq~AIe~EdYE~AA 178 (227)
|.+-...|++-|..-+||-||
T Consensus 5 lkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 334456677777777777776
No 75
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.25 E-value=36 Score=21.98 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=21.3
Q ss_pred Cceeeccccccccc-----------------cccccccHHhhHHHHHHHH
Q 027151 94 EDILFFFFQLDLAT-----------------RVQCALNMEEYDIAQQLRN 126 (227)
Q Consensus 94 e~i~cf~cqldl~t-----------------RLGCp~CYE~F~~a~~Lr~ 126 (227)
....|.+|+..+.. .+.|+.|-..|.....|..
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~ 63 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHH
Confidence 34668888766543 3678888888876444444
No 76
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.04 E-value=23 Score=21.36 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=6.0
Q ss_pred ccccccHHhhHH
Q 027151 109 VQCALNMEEYDI 120 (227)
Q Consensus 109 LGCp~CYE~F~~ 120 (227)
+.|+.|-..|..
T Consensus 33 ~~C~~C~~~f~~ 44 (57)
T 3uk3_C 33 YKCEFCEYAAAQ 44 (57)
T ss_dssp EECSSSSCEESS
T ss_pred cCCCCCcchhCC
Confidence 445555555543
No 77
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.40 E-value=1.2e+02 Score=22.38 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027151 126 NKLTEVEEE 134 (227)
Q Consensus 126 ~kL~~vh~e 134 (227)
++|.+|+-+
T Consensus 48 ell~qMelE 56 (97)
T 3onj_A 48 DLLDQMDVE 56 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 78
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=20.38 E-value=2.4e+02 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=28.6
Q ss_pred hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHHHHH
Q 027151 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATAL 199 (227)
Q Consensus 154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a~Al 199 (227)
.-+++.+++++|+++-..+|-+.-..|..+|+....+....-..++
T Consensus 91 fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~ 136 (171)
T 1fpo_A 91 FLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQL 136 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888899887666755556666666665544443333444
No 79
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=20.37 E-value=91 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHHHHhhHhhhhHHhHHHHHHhhhcccccccc
Q 027151 179 DLRDQICKLEAESLAASATALAFENARFAFRLG 211 (227)
Q Consensus 179 ~LRDeIk~Le~~~~a~~a~Al~~~n~~~~frlG 211 (227)
+|.++|.+++++..+..|.|+|-++-.+...+|
T Consensus 20 ~l~~~i~~~~~~~~~g~A~a~A~a~lp~~~~~g 52 (105)
T 2lme_A 20 QLDNRLDKLDTRVDKGLASSAALNSLFQPYGVG 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 455567777777777677777777765555444
No 80
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.30 E-value=58 Score=25.44 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=22.0
Q ss_pred cCceeeccccccccccc-----cccccHHhhH
Q 027151 93 NEDILFFFFQLDLATRV-----QCALNMEEYD 119 (227)
Q Consensus 93 ne~i~cf~cqldl~tRL-----GCp~CYE~F~ 119 (227)
..+-.|||||-+-..|. .|..|-.+|.
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTEEEE
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCCEEe
Confidence 45667999998877764 5999999988
No 81
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.02 E-value=26 Score=23.26 Aligned_cols=33 Identities=3% Similarity=0.053 Sum_probs=20.0
Q ss_pred cCceeeccccccccc---------------cccccccHHhhHHHHHHH
Q 027151 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLR 125 (227)
Q Consensus 93 ne~i~cf~cqldl~t---------------RLGCp~CYE~F~~a~~Lr 125 (227)
.....|.+|+..+.. .+.|+.|-..|.....|.
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 52 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS 52 (95)
T ss_dssp CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHH
T ss_pred CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH
Confidence 344567777766654 356777777776533443
Done!