BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027152
MACASQAMISANSYIFTSPKLFFNRKHKNQLYSRKRNVNLFAVRASSDDPDDCNDEECAP
DKEVGKVSMEWLAGEKTKVAGTFPPRKREWTGYVEKDTAGQTNIYAVEPTVYVADSAISS
GSAGSSAAGSENTIAITAGVAFLAIAAASSILLQVGKNPPPMQTIDYNGPSLSYYINKFK
PPAFVQASVSSPAESSPSVQAETSAQEVPQIQIQSESNPEPSTNNIS

High Scoring Gene Products

Symbol, full name Information P value
AT5G07020 protein from Arabidopsis thaliana 2.1e-45

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027152
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2169359 - symbol:AT5G07020 "AT5G07020" species...   477  2.1e-45   1


>TAIR|locus:2169359 [details] [associations]
            symbol:AT5G07020 "AT5G07020" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
            morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
            process" evidence=RCA] [GO:0030154 "cell differentiation"
            evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
            [GO:0042793 "transcription from plastid promoter" evidence=RCA]
            EMBL:CP002688 GO:GO:0009535 EMBL:AB010697 EMBL:AY050949
            EMBL:AY091179 IPI:IPI00544024 RefSeq:NP_568178.1 UniGene:At.8530
            STRING:Q9FL44 PRIDE:Q9FL44 ProMEX:Q9FL44 EnsemblPlants:AT5G07020.1
            GeneID:830593 KEGG:ath:AT5G07020 TAIR:At5g07020 InParanoid:Q9FL44
            OMA:MASEAQP PhylomeDB:Q9FL44 ProtClustDB:CLSN2689520
            ArrayExpress:Q9FL44 Genevestigator:Q9FL44 Uniprot:Q9FL44
        Length = 235

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 105/221 (47%), Positives = 119/221 (53%)

Query:     5 SQAMISANSYIFTSPK---LFFNRKHKNQLYSRKRNVNLFAVRASSDDPDDCNDEECAPD 61
             S  ++S N Y+F SPK    F N K      S  R +    VRASSDD D CN EECAP+
Sbjct:     2 SNVLLSPNGYVFASPKPLGRFINSK------SGGRKLFFSVVRASSDDAD-CNAEECAPE 54

Query:    62 KEVGKVSMEWLAGEKTKVAGTFPPRK-REWTGYVEKDTAGQTNIYAVEPTVYVADXXXXX 120
             KEVG VSMEWLAGEKTKV GTFPPRK R WTGYVEKDTAGQTN+Y++EP VYVA+     
Sbjct:    55 KEVGTVSMEWLAGEKTKVVGTFPPRKPRGWTGYVEKDTAGQTNVYSIEPAVYVAESAISS 114

Query:   121 XXXXXXXXXXENTIXXXXXXXXXXXXXXXXXXXQVGKNPPPM-QTIDYNGPSLSYYINKF 179
                       ENT                    QVGK+ P   + +DY+GPSLSYYINKF
Sbjct:   115 GTAGSSADGAENTAAIVAGIALIAVAAASSILLQVGKDAPTRPKAVDYSGPSLSYYINKF 174

Query:   180 KPPAFXXXXXXXXXXXXXXXXXXTSAQEVPQIQIQSESNPE 220
             KP                     TS  E P +  Q  S PE
Sbjct:   175 KPSEIVQPSTPSVTEAPPVAELETSLPETPSVAQQETSLPE 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       175   0.00078  109 3  11 23  0.49    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.51u 0.11s 15.62t   Elapsed:  00:00:01
  Total cpu time:  15.51u 0.11s 15.62t   Elapsed:  00:00:01
  Start:  Fri May 10 02:04:36 2013   End:  Fri May 10 02:04:37 2013

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