BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027152
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus
 pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
 pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
          Length = 634

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 67  VSMEWLAGEKTKVAGTFPPRKREWTG 92
           VS  WL G++ + A  FP  ++ WTG
Sbjct: 375 VSFVWLTGDQYEQADGFPTAQQGWTG 400


>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
 pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With 1-Kestose
 pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja Complex With Nystose
 pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja
 pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With Raffinose
          Length = 634

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 67  VSMEWLAGEKTKVAGTFPPRKREWTG 92
           VS  WL G++ + A  FP  ++ WTG
Sbjct: 375 VSFVWLTGDQYEQADGFPTAQQGWTG 400


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,397,843
Number of Sequences: 62578
Number of extensions: 169884
Number of successful extensions: 244
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 2
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)