Query 027152
Match_columns 227
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 05:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3045 CreA Uncharacterized p 65.7 5.6 0.00012 34.6 2.7 38 58-96 21-61 (165)
2 PRK10756 hypothetical protein; 49.0 20 0.00042 31.0 3.2 38 59-96 19-59 (157)
3 PF05981 CreA: CreA protein; 25.3 78 0.0017 26.5 3.0 32 64-95 1-34 (128)
4 PF04277 OAD_gamma: Oxaloaceta 22.7 1.5E+02 0.0033 20.9 3.8 16 172-187 29-44 (79)
5 PRK13855 type IV secretion sys 20.8 2.3E+02 0.0049 27.5 5.5 9 176-184 70-78 (376)
6 KOG0092 GTPase Rab5/YPT51 and 20.8 50 0.0011 29.5 1.1 21 92-113 55-75 (200)
7 PF05782 ECM1: Extracellular m 20.0 2.7E+02 0.0059 28.3 6.0 20 138-161 9-28 (544)
8 COG0154 GatA Asp-tRNAAsn/Glu-t 18.6 36 0.00078 32.5 -0.2 30 115-146 145-175 (475)
9 PF10650 zf-C3H1: Putative zin 15.0 68 0.0015 20.0 0.4 8 52-59 11-18 (23)
10 TIGR03176 AllC allantoate amid 14.6 3.3E+02 0.0071 24.8 4.9 57 94-162 50-113 (406)
No 1
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.74 E-value=5.6 Score=34.61 Aligned_cols=38 Identities=34% Similarity=0.644 Sum_probs=32.0
Q ss_pred ccCccccceee--ceeeccccceEeeeCC-CCcccccceeec
Q 027152 58 CAPDKEVGKVS--MEWLAGEKTKVAGTFP-PRKREWTGYVEK 96 (227)
Q Consensus 58 CAP~KEVG~~s--~eW~a~erTkVvgtfp-P~k~~wTGYVEk 96 (227)
||-..|||+|+ ++|+-.+. .||--|- |..+|-|=||-.
T Consensus 21 ~a~aE~iG~V~tvf~~~G~D~-IvveafdDP~V~gVTCyvs~ 61 (165)
T COG3045 21 LAHAEEIGSVSTVFDWLGNDH-IVVEAFDDPDVKGVTCYVSR 61 (165)
T ss_pred ccchhhccccceeEEEecCCc-EEEEecCCCCcCcEEEEEEE
Confidence 44567899999 99999999 7887777 888999999865
No 2
>PRK10756 hypothetical protein; Provisional
Probab=48.98 E-value=20 Score=30.99 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=28.9
Q ss_pred cCccccceee--ceeeccccceEeeeCC-CCcccccceeec
Q 027152 59 APDKEVGKVS--MEWLAGEKTKVAGTFP-PRKREWTGYVEK 96 (227)
Q Consensus 59 AP~KEVG~~s--~eW~a~erTkVvgtfp-P~k~~wTGYVEk 96 (227)
+...|||++| ..|+-.+...||--|- |..+|-|=||-.
T Consensus 19 a~aeeiG~VsT~~~~~G~d~kI~VeA~dDP~V~GVTCyvS~ 59 (157)
T PRK10756 19 AHAEEIGSVDTVFKMIGPDHKIVVEAFDDPDVKNVTCYVSR 59 (157)
T ss_pred cccccceeeeeeeeeecCCCEEEEEEecCCCCCcEEEEEee
Confidence 4446899999 7888866556666666 888999988854
No 3
>PF05981 CreA: CreA protein; InterPro: IPR010292 This family consists of several bacterial CreA proteins, the function of which is unknown.
Probab=25.30 E-value=78 Score=26.47 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=24.2
Q ss_pred cceeecee-eccccceEeeeCC-CCcccccceee
Q 027152 64 VGKVSMEW-LAGEKTKVAGTFP-PRKREWTGYVE 95 (227)
Q Consensus 64 VG~~s~eW-~a~erTkVvgtfp-P~k~~wTGYVE 95 (227)
||++|..| |.+.++.+|--|. |..+|-|=||-
T Consensus 1 vg~vst~~kl~g~dkI~VeA~dDP~V~GVTCyvS 34 (128)
T PF05981_consen 1 VGEVSTVFKLLGKDKIVVEAFDDPKVPGVTCYVS 34 (128)
T ss_pred CcEEeeeEEEecCCEEEEEEecCCCCCcEEEEEe
Confidence 79999999 5555555555565 88899988874
No 4
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.70 E-value=1.5e+02 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=10.6
Q ss_pred hhhHhhhcCCcceeec
Q 027152 172 LSYYINKFKPPAFVQA 187 (227)
Q Consensus 172 LSyYi~KF~p~~~~qa 187 (227)
+++++++|++.+....
T Consensus 29 ~~~~~~~~~~~~~~~~ 44 (79)
T PF04277_consen 29 MSKLIRKFAPKEKPAP 44 (79)
T ss_pred HHHHHHhhcccccccc
Confidence 5667888887764443
No 5
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=20.84 E-value=2.3e+02 Score=27.54 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.8
Q ss_pred hhhcCCcce
Q 027152 176 INKFKPPAF 184 (227)
Q Consensus 176 i~KF~p~~~ 184 (227)
-.-|.|..+
T Consensus 70 t~~f~p~~~ 78 (376)
T PRK13855 70 TKPFHPAPI 78 (376)
T ss_pred cCCCCCCCC
Confidence 344777543
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.76 E-value=50 Score=29.52 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=15.9
Q ss_pred ceeeccCCCCcceeeecceeee
Q 027152 92 GYVEKDTAGQTNIYAVEPTVYV 113 (227)
Q Consensus 92 GYVEkDTAGQtNIyaVEP~vyv 113 (227)
=+...|||||.+--++-| +|+
T Consensus 55 kfeIWDTAGQERy~slap-MYy 75 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAP-MYY 75 (200)
T ss_pred EEEEEEcCCccccccccc-cee
Confidence 366789999999667776 454
No 7
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=19.97 E-value=2.7e+02 Score=28.34 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCC
Q 027152 138 AGVAFLAIAAASSILLQVGKNPPP 161 (227)
Q Consensus 138 aglaliavAaassiLlqvgk~~P~ 161 (227)
..||.+|||+++| -|...|.
T Consensus 9 LvLacLAvaSaAS----eGg~k~s 28 (544)
T PF05782_consen 9 LVLACLAVASAAS----EGGFKAS 28 (544)
T ss_pred HHHHHHHHHHHhh----cCCCCCc
Confidence 3467777777777 5554444
No 8
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=18.60 E-value=36 Score=32.49 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=21.9
Q ss_pred cccc-ccCCcCCCCCCccchHHHHhhHHHHHHH
Q 027152 115 DSAI-SSGSAGSSAAGSENTIAITAGVAFLAIA 146 (227)
Q Consensus 115 eSai-Ssg~AGtss~G~ent~ai~aglaliavA 146 (227)
-.+. ..-++|+||.|+ ++|+++|++.++++
T Consensus 145 ~NP~~~~~~pGGSSgGS--AaAVAag~~~~alG 175 (475)
T COG0154 145 RNPWNLERVPGGSSGGS--AAAVAAGLVPLALG 175 (475)
T ss_pred CCCCCCCCCCCcCchHH--HHHHHhCCcchhcc
Confidence 3444 566789998887 77777888777766
No 9
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=15.00 E-value=68 Score=19.98 Aligned_cols=8 Identities=50% Similarity=1.282 Sum_probs=6.8
Q ss_pred CCCCcCcc
Q 027152 52 DCNDEECA 59 (227)
Q Consensus 52 dCN~eeCA 59 (227)
.|||+.|.
T Consensus 11 ~Cnd~~C~ 18 (23)
T PF10650_consen 11 VCNDPDCE 18 (23)
T ss_pred eeCCCCCC
Confidence 69999995
No 10
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=14.59 E-value=3.3e+02 Score=24.82 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=0.0
Q ss_pred eeccCCCCcceeeec-------ceeeeeccccccCCcCCCCCCccchHHHHhhHHHHHHHHHHHHHHHhCCCCCCC
Q 027152 94 VEKDTAGQTNIYAVE-------PTVYVADSAISSGSAGSSAAGSENTIAITAGVAFLAIAAASSILLQVGKNPPPM 162 (227)
Q Consensus 94 VEkDTAGQtNIyaVE-------P~vyvAeSaiSsg~AGtss~G~ent~ai~aglaliavAaassiLlqvgk~~P~~ 162 (227)
|..|.+| |||..- |.|++ ||=.|++.|.-..=+.++.++...+.-.|-.-|..++.+
T Consensus 50 v~~D~~g--N~~~~~~g~~~~~~~i~~----------gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~ 113 (406)
T TIGR03176 50 TRFDDVG--NLYGRLVGTEFPEETILT----------GSHIDTVVNGGNLDGQFGALAAWLAVDYLKEKYGAPLRT 113 (406)
T ss_pred EEEcCCC--cEEEEecCCCCCCCeEEE----------eccccCCCCCCccCchhhHHHHHHHHHHHHHcCCCCCCC
Done!