Query 027152
Match_columns 227
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 36.8 39 0.0013 22.6 3.6 23 131-153 7-33 (44)
2 2ks1_B Epidermal growth factor 33.1 37 0.0013 22.6 3.0 23 132-154 13-35 (44)
3 2knc_B Integrin beta-3; transm 31.7 34 0.0012 24.7 2.9 12 132-143 9-20 (79)
4 2k9y_A Ephrin type-A receptor 27.2 69 0.0024 19.7 3.4 11 130-140 9-19 (41)
5 2l9u_A Receptor tyrosine-prote 26.4 55 0.0019 21.9 2.9 24 133-156 9-32 (40)
6 2k9j_B Integrin beta-3; transm 23.0 73 0.0025 20.8 3.0 11 132-142 8-18 (43)
7 3zqx_A Cellulose 1,4-beta-cell 15.9 62 0.0021 25.7 1.7 38 66-106 53-90 (146)
8 1vf5_F Protein PET M; photosyn 11.8 1.9E+02 0.0067 18.6 2.9 21 132-152 7-27 (35)
9 3j1r_A Archaeal adhesion filam 11.5 2E+02 0.0068 17.8 2.7 18 136-153 4-21 (26)
10 1hxv_A Trigger factor; FKBP fo 10.7 1E+02 0.0036 22.4 1.5 30 73-108 79-108 (113)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.78 E-value=39 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=10.6
Q ss_pred cchHHHHh----hHHHHHHHHHHHHHH
Q 027152 131 ENTIAITA----GVAFLAIAAASSILL 153 (227)
Q Consensus 131 ent~ai~a----glaliavAaassiLl 153 (227)
.|+.+|++ ||+++++.+....++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVY 33 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHH
Confidence 35555554 444444444443343
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.07 E-value=37 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=12.6
Q ss_pred chHHHHhhHHHHHHHHHHHHHHH
Q 027152 132 NTIAITAGVAFLAIAAASSILLQ 154 (227)
Q Consensus 132 nt~ai~aglaliavAaassiLlq 154 (227)
=++.+++||+++++.+....++-
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHHHHh
Confidence 34556666666555555544443
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.66 E-value=34 Score=24.74 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=8.4
Q ss_pred chHHHHhhHHHH
Q 027152 132 NTIAITAGVAFL 143 (227)
Q Consensus 132 nt~ai~aglali 143 (227)
|.++|++|+.+.
T Consensus 9 n~~~Iv~gvi~g 20 (79)
T 2knc_B 9 DILVVLLSVMGA 20 (79)
T ss_dssp CSHHHHHHHHHH
T ss_pred CchhhHHHHHHH
Confidence 788888875443
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=27.16 E-value=69 Score=19.68 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=5.7
Q ss_pred ccchHHHHhhH
Q 027152 130 SENTIAITAGV 140 (227)
Q Consensus 130 ~ent~ai~agl 140 (227)
.+|.++|++|+
T Consensus 9 ~~~~~~I~~~v 19 (41)
T 2k9y_A 9 GSGNLAVIGGV 19 (41)
T ss_dssp CCSSTHHHHHH
T ss_pred CCceEEEEeeh
Confidence 44555555553
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=26.36 E-value=55 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhC
Q 027152 133 TIAITAGVAFLAIAAASSILLQVG 156 (227)
Q Consensus 133 t~ai~aglaliavAaassiLlqvg 156 (227)
++.+++||+.|+.-..+.+|.--|
T Consensus 9 alt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcc
Confidence 567889999999999999887554
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=23.03 E-value=73 Score=20.75 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=8.3
Q ss_pred chHHHHhhHHH
Q 027152 132 NTIAITAGVAF 142 (227)
Q Consensus 132 nt~ai~aglal 142 (227)
|.++|++|+.+
T Consensus 8 n~~~Iv~gvi~ 18 (43)
T 2k9j_B 8 DILVVLLSVMG 18 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred CEeehHHHHHH
Confidence 88898888543
No 7
>3zqx_A Cellulose 1,4-beta-cellobiosidase; hydrolase, cellulose binding protein; 1.04A {Clostridium thermocellum} PDB: 2ylk_A
Probab=15.88 E-value=62 Score=25.67 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=28.5
Q ss_pred eeeceeeccccceEeeeCCCCcccccceeeccCCCCcceee
Q 027152 66 KVSMEWLAGEKTKVAGTFPPRKREWTGYVEKDTAGQTNIYA 106 (227)
Q Consensus 66 ~~s~eW~a~erTkVvgtfpP~k~~wTGYVEkDTAGQtNIya 106 (227)
.+..+|-.---.+|-|+|| +.+...|||-+=.| ++|++
T Consensus 53 ~~~cdya~~g~s~Vtg~~~--~~~ad~YlEI~f~~-g~l~p 90 (146)
T 3zqx_A 53 QFICYYTPIGSGNLIPSFG--GSGDEHYLQLEFKD-VKLPA 90 (146)
T ss_dssp EEECSCCTTCGGGEEEEEE--CCGGGCEEEEEECS-CEECT
T ss_pred EEEEEccccCCCcceeEEe--cCCCcEEEEEEeCC-cEEcC
Confidence 4556676655568999996 58888999999888 66664
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=11.84 E-value=1.9e+02 Score=18.64 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.8
Q ss_pred chHHHHhhHHHHHHHHHHHHH
Q 027152 132 NTIAITAGVAFLAIAAASSIL 152 (227)
Q Consensus 132 nt~ai~aglaliavAaassiL 152 (227)
|++++..+|.|+.+|....+|
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678888888888887765544
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=11.53 E-value=2e+02 Score=17.77 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=9.3
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 027152 136 ITAGVAFLAIAAASSILL 153 (227)
Q Consensus 136 i~aglaliavAaassiLl 153 (227)
|+|.+-||-+|.++..|+
T Consensus 4 iVA~~lLIviav~aaVll 21 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLL 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555444
No 10
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=10.75 E-value=1e+02 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccccceEeeeCCCCcccccceeeccCCCCcceeeec
Q 027152 73 AGEKTKVAGTFPPRKREWTGYVEKDTAGQTNIYAVE 108 (227)
Q Consensus 73 a~erTkVvgtfpP~k~~wTGYVEkDTAGQtNIyaVE 108 (227)
.+++..|.-+||+. |=+++-+|++=+|.|+
T Consensus 79 ~Ge~~~v~i~fP~~------Yg~~~~~g~~l~F~V~ 108 (113)
T 1hxv_A 79 VNQKKTLALTFPSD------YHVKELQSKPVTFEVV 108 (113)
T ss_dssp SSEEEEECCCCCTT------SSSSGGGSCCCEEEEE
T ss_pred CCCEEEEEEeCchh------hCcCCCCCCEEEEEEE
Confidence 67777777788876 4456678888888876
Done!