Query 027153
Match_columns 227
No_of_seqs 152 out of 1483
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145 Cystine transporter Cy 100.0 1.6E-47 3.5E-52 324.9 1.2 226 1-227 112-339 (372)
2 TIGR00951 2A43 Lysosomal Cysti 100.0 6E-38 1.3E-42 264.1 15.3 201 11-226 2-203 (220)
3 KOG2913 Predicted membrane pro 99.9 2.3E-23 4.9E-28 178.6 13.5 176 6-201 2-215 (260)
4 KOG3211 Predicted endoplasmic 99.7 1E-16 2.2E-21 130.8 12.4 182 5-217 23-204 (230)
5 PF04193 PQ-loop: PQ loop repe 99.5 2.2E-13 4.7E-18 92.2 6.9 53 12-64 1-53 (61)
6 PF04193 PQ-loop: PQ loop repe 99.3 1.9E-12 4E-17 87.6 5.7 58 152-209 2-59 (61)
7 smart00679 CTNS Repeated motif 99.0 1.5E-10 3.2E-15 68.2 2.3 32 26-57 1-32 (32)
8 KOG2913 Predicted membrane pro 98.9 8.2E-10 1.8E-14 95.1 2.5 87 10-117 163-249 (260)
9 smart00679 CTNS Repeated motif 98.9 7.6E-10 1.6E-14 65.1 1.5 32 165-196 1-32 (32)
10 TIGR00951 2A43 Lysosomal Cysti 98.6 4.4E-08 9.6E-13 82.8 5.9 54 152-205 4-57 (220)
11 COG4095 Uncharacterized conser 98.6 2.2E-08 4.8E-13 71.4 3.2 72 152-227 5-76 (89)
12 PHA02246 hypothetical protein 98.4 6.3E-06 1.4E-10 65.0 11.7 160 11-206 3-163 (192)
13 KOG1623 Multitransmembrane pro 98.2 7.3E-06 1.6E-10 69.8 7.7 189 10-226 6-198 (243)
14 KOG3145 Cystine transporter Cy 98.1 1.7E-07 3.7E-12 81.0 -2.7 56 150-205 122-177 (372)
15 PF03083 MtN3_slv: Sugar efflu 98.0 3.3E-06 7.1E-11 60.9 2.7 69 154-226 5-73 (87)
16 COG4095 Uncharacterized conser 98.0 2.9E-05 6.3E-10 55.6 7.0 53 12-64 4-56 (89)
17 PF03083 MtN3_slv: Sugar efflu 97.9 6.2E-05 1.3E-09 54.1 7.2 82 15-117 5-86 (87)
18 PF00810 ER_lumen_recept: ER l 96.7 0.017 3.6E-07 45.9 9.1 57 147-203 88-144 (147)
19 KOG3211 Predicted endoplasmic 95.8 0.024 5.1E-07 47.2 5.9 75 23-117 152-226 (230)
20 KOG3106 ER lumen protein retai 95.7 0.21 4.5E-06 41.2 10.9 60 151-210 115-174 (212)
21 PHA02246 hypothetical protein 95.4 0.12 2.7E-06 41.1 8.2 35 25-59 121-155 (192)
22 KOG1623 Multitransmembrane pro 95.3 0.032 7E-07 47.7 5.0 70 151-224 8-78 (243)
23 COG5196 ERD2 ER lumen protein 92.4 4.5 9.7E-05 32.9 11.7 50 151-200 116-165 (214)
24 PF00810 ER_lumen_recept: ER l 82.6 5.3 0.00011 31.6 6.4 51 11-61 91-141 (147)
25 KOG2489 Transmembrane protein 68.7 9.1 0.0002 36.2 4.8 60 131-190 447-507 (592)
26 KOG2489 Transmembrane protein 43.9 25 0.00054 33.4 3.3 39 12-51 469-507 (592)
27 PF07578 LAB_N: Lipid A Biosyn 43.5 24 0.00053 24.5 2.4 64 156-224 2-65 (72)
28 COG5196 ERD2 ER lumen protein 26.5 2.9E+02 0.0062 22.7 6.3 49 11-59 115-163 (214)
No 1
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-47 Score=324.94 Aligned_cols=226 Identities=56% Similarity=0.919 Sum_probs=206.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhc
Q 027153 1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKY 80 (227)
Q Consensus 1 ~~~~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~ 80 (227)
|..|++.++++..+++||++++.|++|++||++.||||||++|+|.||+.+++.|...|++++..++|.+..+.||..++
T Consensus 112 ~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~ 191 (372)
T KOG3145|consen 112 MTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSY 191 (372)
T ss_pred EEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999998899998888
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHhhhhhheeccCCccchh-HHHHHHHHHHHhhheeeEEecccc-chHHHHHHHHHH
Q 027153 81 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAI 158 (227)
Q Consensus 81 ~~~~~~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~ 158 (227)
|.| .+|+..+|+.+++|+++++.+++.|++.|+|..|+.|+ +..+++.+.++...+++.++++.. .|++....+.++
T Consensus 192 p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syi 270 (372)
T KOG3145|consen 192 PLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYI 270 (372)
T ss_pred CCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 866 48899999999999999999999999999999999887 466666666665555655555432 478889999999
Q ss_pred HHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhccC
Q 027153 159 QVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227 (227)
Q Consensus 159 ~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~~ 227 (227)
+..+++++|+||.++||+||||+|+|+..+++|+.|+.++.+|.+.++.+++||..+.||++|++|+++
T Consensus 271 Kl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~v 339 (372)
T KOG3145|consen 271 KLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLV 339 (372)
T ss_pred HHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=6e-38 Score=264.11 Aligned_cols=201 Identities=40% Similarity=0.628 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccc
Q 027153 11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA 90 (227)
Q Consensus 11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~ 90 (227)
.+|+++||+++++|+++++||++||+||||+||+|++|+.+|+.|++++.+|+...++++..+++|..++ ++++.
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~-----~~v~~ 76 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSS-----PGVTQ 76 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccc-----CCCcH
Confidence 5799999999999999999999999999999999999999999999999999998888776665544332 33777
Q ss_pred hhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHhhheeeEEe-ccccchHHHHHHHHHHHHHHHHhhccc
Q 027153 91 NDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIP 169 (227)
Q Consensus 91 ~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~~P 169 (227)
+|+++++|.++++++++.|+.+|+++.|+.++.+...+...+..+....... .....+.+..+.+++++.++..++|+|
T Consensus 77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiP 156 (220)
T TIGR00951 77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFP 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999998888888776543332222221111111 122357889999999999999999999
Q ss_pred hhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153 170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226 (227)
Q Consensus 170 Qi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~ 226 (227)
|+++|||||||+|+|+.++++|++|.+.+ ++++.+++ +|++|++++.
T Consensus 157 Qi~~Ny~~ksT~glSi~~i~Ld~~G~lqr----i~ts~~~~------gd~~~l~~~~ 203 (220)
T TIGR00951 157 QAATNYHNKSTGQLSIITVFLDFTGLLQR----IFQSVNET------GDPLKAGLFV 203 (220)
T ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHH----HHHHHHHc------CCHHHHHHHH
Confidence 99999999999999999999999995555 45554333 8888887754
No 3
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.90 E-value=2.3e-23 Score=178.56 Aligned_cols=176 Identities=24% Similarity=0.285 Sum_probs=129.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCC
Q 027153 6 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQM 85 (227)
Q Consensus 6 ~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~ 85 (227)
...++.+|.++|.++++||+++.+|||++|||+||+||+|+.|+..|+.|++++.+++... +.
T Consensus 2 ~~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~-----------------~~ 64 (260)
T KOG2913|consen 2 IMINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ-----------------PL 64 (260)
T ss_pred CchHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc-----------------cc
Confidence 4567899999999999999999999999999999999999999999999999988765421 11
Q ss_pred CcccchhHHHHHHHHHHHHHhhhhhheeccCCc-c--------chhHHH------------------------HHHHHHH
Q 027153 86 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQ-K--------VSKISM------------------------AIVSVVW 132 (227)
Q Consensus 86 ~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~-~--------~s~~~~------------------------~~~~~~~ 132 (227)
.|. ...-+....+.|++++.|+.||+.... + .+..+- ......+
T Consensus 65 ~~~---~~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 141 (260)
T KOG2913|consen 65 GST---LKVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVF 141 (260)
T ss_pred chh---HHHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHH
Confidence 222 223455568899999999999976543 1 000000 0000000
Q ss_pred -Hhhh--eeeEEecc-c-cchHHHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHH
Q 027153 133 -LAAA--VCFFVALP-N-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ 201 (227)
Q Consensus 133 -~~~~--~~~~~~~~-~-~~~~~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s 201 (227)
..+. .......+ . ......+.++|++++.++...|+|||++||+||||+|+|..++.++..|+..|..|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s 215 (260)
T KOG2913|consen 142 LICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS 215 (260)
T ss_pred HHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc
Confidence 0000 00000000 1 12234778999999999999999999999999999999999999999999999988
No 4
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=99.72 E-value=1e-16 Score=130.84 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=127.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCC
Q 027153 5 NSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQ 84 (227)
Q Consensus 5 ~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~ 84 (227)
++.+...+|+.+||..+.+....++|||.|+..+||++|+|...+.+++.|+...+.|+. ...||
T Consensus 23 ~~cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~------------~~g~p--- 87 (230)
T KOG3211|consen 23 KDCLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY------------TSGYP--- 87 (230)
T ss_pred ccchHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh------------hcCCC---
Confidence 467788999999999999999999999999999999999999999999999986655543 12232
Q ss_pred CCcccchhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHhhheeeEEeccccchHHHHHHHHHHHHHHHH
Q 027153 85 MIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTL 164 (227)
Q Consensus 85 ~~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 164 (227)
+..+.+..+ .++++.+++.++++|+-..-...... ... ...+.+. .....-.+..+........+..
T Consensus 88 --Fss~gE~~f---Ll~Q~vili~~if~f~~~~~~~v~~l-~~~-~~v~~~~------~sk~~p~~~~~L~~~~~l~i~v 154 (230)
T KOG3211|consen 88 --FSSYGEYPF---LLLQAVILILCIFHFSGQTVTVVQFL-GYI-ALVVSVL------ASKALPLWIITLAQNLCLPIVV 154 (230)
T ss_pred --chhHHHHHH---HHHHHHHHHHHHHHhccceeehhhHH-HHH-HHHHHHH------HHhhhhHHHHHHHHhcCchhhh
Confidence 223333323 47788899999998883221111010 000 0000000 0011123445555566677888
Q ss_pred hhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceec
Q 027153 165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG 217 (227)
Q Consensus 165 ~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~ 217 (227)
.+|+||+..|||+|+|+++|..+.++++.|.+++++...- +.+|...+.+
T Consensus 155 ~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq---~t~d~~mll~ 204 (230)
T KOG3211|consen 155 VSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQ---ETGDFLMLLR 204 (230)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHH---hcCChhhHHH
Confidence 9999999999999999999999999999999999754433 4566655443
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=99.46 E-value=2.2e-13 Score=92.16 Aligned_cols=53 Identities=42% Similarity=0.742 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHH
Q 027153 12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64 (227)
Q Consensus 12 is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~ 64 (227)
++.++|+++.++++++++||++||+|+||++|+|+.++.+++.|+++..+|..
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999877654
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=99.34 E-value=1.9e-12 Score=87.57 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccC
Q 027153 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQ 209 (227)
Q Consensus 152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~ 209 (227)
.+.+|+++.++.+++++||+++|||+||++|+|..++.++..|++++.+..+++..++
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999999999999999999888876543
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=99.02 E-value=1.5e-10 Score=68.22 Aligned_cols=32 Identities=53% Similarity=0.710 Sum_probs=29.6
Q ss_pred HhhHHHHHHHHHhcCccCcchhHHHHHHHHHH
Q 027153 26 VSFYPQVILNFRRKSVVGLNFDFVLLNLTKHS 57 (227)
Q Consensus 26 ~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~ 57 (227)
++++||+++|+|+||++|+|+.++++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 46899999999999999999999999999863
No 8
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=98.88 E-value=8.2e-10 Score=95.10 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCccc
Q 027153 10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA 89 (227)
Q Consensus 10 ~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~ 89 (227)
+..+.++||++.+++...++|||++|+||||+||+|+.++.++..||.+|.... +. ..+.
T Consensus 163 ~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s~------------~~-----~~n~--- 222 (260)
T KOG2913|consen 163 DSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILSS------------YL-----VTNL--- 222 (260)
T ss_pred cchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccccccccc------------cc-----ccCC---
Confidence 467889999999999999999999999999999999999999999999774420 00 1112
Q ss_pred chhHHHHHHHHHHHHHhhhhhheeccCC
Q 027153 90 ANDVAFSMHAVLLTIITLFQIAIYERGV 117 (227)
Q Consensus 90 ~~~v~~s~~~~~~~~iil~Q~~~Y~~~~ 117 (227)
+|...+......|+.++.|+++|++.+
T Consensus 223 -~w~~~~~~~~~~D~~~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 223 -PWLVDSKGTIYLDIFIFLQFFNYRASK 249 (260)
T ss_pred -cccccCCcchhHHHHHHHHHHHhhccc
Confidence 355566667889999999999888754
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.87 E-value=7.6e-10 Score=65.12 Aligned_cols=32 Identities=50% Similarity=0.748 Sum_probs=29.7
Q ss_pred hhccchhhhhhccCcccccChHHHHHHHHhHH
Q 027153 165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC 196 (227)
Q Consensus 165 ~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~ 196 (227)
++++||+++|||+||++|+|+.++++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 36899999999999999999999999999974
No 10
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.65 E-value=4.4e-08 Score=82.76 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhh
Q 027153 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ 205 (227)
Q Consensus 152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~ 205 (227)
...+|+...+++.++++||+++||||||++|+|+.++.++..|..++....+..
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~ 57 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQ 57 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999886543
No 11
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.2e-08 Score=71.42 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhccC
Q 027153 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227 (227)
Q Consensus 152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~~ 227 (227)
.+..|+.+..++.+.++||..+.+|.|+|.+.|+.|+.+...|-..++ ++|...+|-|.+.+|.+.+.++++
T Consensus 5 ~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwl----iygILi~~lPii~aN~i~~il~li 76 (89)
T COG4095 5 IEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWL----IYGILINDLPIIIANIISFILSLI 76 (89)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH----HHHHHHccCcchhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999986 888888899999999999988753
No 12
>PHA02246 hypothetical protein
Probab=98.41 E-value=6.3e-06 Score=65.02 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccc
Q 027153 11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA 90 (227)
Q Consensus 11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~ 90 (227)
.++..+...+...-...++||+....|.|+.+|.|-.|..+-...-- .+.||.... +....|.
T Consensus 3 ~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvg-iSfyNlL~T----------------~~~~fqi 65 (192)
T PHA02246 3 NLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVG-ISFYNLLLT----------------DASVFQI 65 (192)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHH-HHHHHHHhc----------------CCceEEE
Confidence 45667777888888899999999999999999999998777443222 113343211 1111111
Q ss_pred hhHHHHHHHHHHHHHhhh-hhheeccCCccchhHHHHHHHHHHHhhheeeEEeccccchHHHHHHHHHHHHHHHHhhccc
Q 027153 91 NDVAFSMHAVLLTIITLF-QIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIP 169 (227)
Q Consensus 91 ~~v~~s~~~~~~~~iil~-Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~P 169 (227)
.+++ .-..+-+.. ....||+++--..++...+..+.+..+ +..+.....+...-..+|+|
T Consensus 66 ----~svg-~nl~lgivcLlv~~~rkkd~f~~~fiiifSLllfll~--------------~~~evtQtVat~tIiLaYi~ 126 (192)
T PHA02246 66 ----VSVG-LNLTLGIVCLLVASYRKKDYFSIPFIIVFSLLLFLLS--------------DFTALTQTVATITIILAYVT 126 (192)
T ss_pred ----eeee-hhhhhhhhheeeehhhccccccchHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHH
Confidence 1111 111212222 234567665433333222211122111 12233445666666779999
Q ss_pred hhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhh
Q 027153 170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 206 (227)
Q Consensus 170 Qi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~ 206 (227)
||..=||.|+.||-|....++-..|-.+-..+.++..
T Consensus 127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth 163 (192)
T PHA02246 127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH 163 (192)
T ss_pred HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC
Confidence 9999999999999999999998888777666666543
No 13
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=98.16 E-value=7.3e-06 Score=69.81 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCccc
Q 027153 10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA 89 (227)
Q Consensus 10 ~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~ 89 (227)
..+-.++|-++..+-..+.+|-.++++||||+||.|..=++..+++..+++-|... +.+ +..-+.
T Consensus 6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~------------~~~---d~llit 70 (243)
T KOG1623|consen 6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLL------------KVH---DYLLIT 70 (243)
T ss_pred HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhh------------ccC---ceEEEE
Confidence 34445566667777789999999999999999999999999999998877555321 010 111111
Q ss_pred chhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHh-hheeeEEeccccchHHHHHHHHHHHH---HHHHh
Q 027153 90 ANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLA-AAVCFFVALPNHSWLWLINFFNAIQV---IMTLI 165 (227)
Q Consensus 90 ~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~ 165 (227)
.+ +. ++....+-+.-+++|.++++..+......+..+.+. .........+.+ ..+.+|.+.+ ++...
T Consensus 71 IN----~~-G~~ie~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~lG~vc~~~nI~~~~ 141 (243)
T KOG1623|consen 71 IN----GI-GLVIETVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPER----RVSVLGIVCAVFNISMFA 141 (243)
T ss_pred Ee----hh-cHHHHHHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcce----eeeeeehhhhhhhHHhhh
Confidence 11 11 245555666667788776543222211111111111 111111111111 1123334443 33444
Q ss_pred hccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153 166 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226 (227)
Q Consensus 166 ~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~ 226 (227)
+.+--+.+--|+||+|.+.+..-+. ......++.+++..-+|.-+..-|.+-+.+++
T Consensus 142 sPL~~m~~VIktkSvE~mPf~Ls~a----~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~ 198 (243)
T KOG1623|consen 142 APLSVIRKVIKTKSVEYMPFPLSFA----LFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGL 198 (243)
T ss_pred ccHHhhhhheecCceeeechHHHHH----HHHHHHHHHHHHHHhcCeEEEcccHHHHHHHH
Confidence 5555566788889999999988443 34445667799988889888888887777664
No 14
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=98.14 E-value=1.7e-07 Score=81.04 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhh
Q 027153 150 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ 205 (227)
Q Consensus 150 ~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~ 205 (227)
..-+++||+..+.+.+++.||++.||||||++|+|+.++.+|..|-..+.+..+..
T Consensus 122 il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l 177 (372)
T KOG3145|consen 122 ILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL 177 (372)
T ss_pred HHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999998877665
No 15
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.03 E-value=3.3e-06 Score=60.86 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153 154 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226 (227)
Q Consensus 154 ~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~ 226 (227)
.++....++...+.+||+.+.+|+|+++++|...+...+.++.++. .+|...+||+.+..|.+-+.++.
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~----~YG~l~~d~~i~~~N~~g~~~~~ 73 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWL----IYGILINDWPIIVPNVFGLVLSI 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhh----hhhhhcCCeeEEeeHHHHHHHHH
Confidence 4556677778888999999999999999999999999999999986 99999999999999998877653
No 16
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=2.9e-05 Score=55.58 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHH
Q 027153 12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64 (227)
Q Consensus 12 is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~ 64 (227)
.-.+.|++....-.++++||.+|.+|.|+++++|+.++..-..|..++++|.+
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI 56 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI 56 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999988876
No 17
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.88 E-value=6.2e-05 Score=54.12 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccchhHH
Q 027153 15 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVA 94 (227)
Q Consensus 15 ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~~~v~ 94 (227)
++|.+..++-..+.+||+++.+|+||++++|+..+...++++..+..|.... ++ .++-.....
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~----------------~d-~~i~~~N~~ 67 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI----------------ND-WPIIVPNVF 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc----------------CC-eeEEeeHHH
Confidence 4566677778888999999999999999999999999999999888876521 11 233333333
Q ss_pred HHHHHHHHHHHhhhhhheeccCC
Q 027153 95 FSMHAVLLTIITLFQIAIYERGV 117 (227)
Q Consensus 95 ~s~~~~~~~~iil~Q~~~Y~~~~ 117 (227)
.+......+.-++.|.+++
T Consensus 68 ----g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 68 ----GLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred ----HHHHHHHHHhheEEeCCCC
Confidence 3566666677777777653
No 18
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=96.69 E-value=0.017 Score=45.89 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHH
Q 027153 147 SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMI 203 (227)
Q Consensus 147 ~~~~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~ 203 (227)
+..+..++++..+..+++++-+||..+-.|+|.+|.+...+++.....=+++++-.+
T Consensus 88 ~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi 144 (147)
T PF00810_consen 88 NSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWI 144 (147)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999988887777666665443
No 19
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.84 E-value=0.024 Score=47.20 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccchhHHHHHHHHHH
Q 027153 23 AWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLL 102 (227)
Q Consensus 23 ~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~~~v~~s~~~~~~ 102 (227)
.-..+++||+.+|||+|++--+|....++.+.|...-.++.. . ++ +| +. -+..-+....+
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi-q-----------~t---~d--~~---mll~~v~s~~~ 211 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI-Q-----------ET---GD--FL---MLLRFVISLAL 211 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH-H-----------hc---CC--hh---hHHHHHHHHHH
Confidence 445899999999999999999999999999988875533221 1 11 11 11 11111224677
Q ss_pred HHHhhhhhheeccCC
Q 027153 103 TIITLFQIAIYERGV 117 (227)
Q Consensus 103 ~~iil~Q~~~Y~~~~ 117 (227)
+.++..|+..|+++.
T Consensus 212 Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 212 NGLITAQVLRYWSTA 226 (230)
T ss_pred hHHHHHHHHHHHhcC
Confidence 899999999888654
No 20
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.21 Score=41.23 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCC
Q 027153 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN 210 (227)
Q Consensus 151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~ 210 (227)
+.++++..+.-+++++-+||...--|.|.+|-+--..++.--.-=.+++.-.+.+-...+
T Consensus 115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~ 174 (212)
T KOG3106|consen 115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTED 174 (212)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999999999999999998888877666555666665555543333
No 21
>PHA02246 hypothetical protein
Probab=95.40 E-value=0.12 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHH
Q 027153 25 SVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY 59 (227)
Q Consensus 25 ~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~ 59 (227)
...++|||+.=||+|+.||.++.+.++-..|-.+-
T Consensus 121 iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L 155 (192)
T PHA02246 121 ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL 155 (192)
T ss_pred HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH
Confidence 46799999999999999999999998877776543
No 22
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=95.26 E-value=0.032 Score=47.73 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCC-cccceeccceehhh
Q 027153 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLL 224 (227)
Q Consensus 151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~-~~~~i~~n~~~~~~ 224 (227)
....++.......+.+-+|-.++-+||||+||.|..-+++...++.+|+ -++...+ |+..|+-|.+-..+
T Consensus 8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl----~YG~~~~~d~llitIN~~G~~i 78 (243)
T KOG1623|consen 8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWL----YYGLLKVHDYLLITINGIGLVI 78 (243)
T ss_pred HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHH----HhhhhccCceEEEEEehhcHHH
Confidence 3444555556666788899999999999999999999999999999986 8885555 99999999876543
No 23
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=92.38 E-value=4.5 Score=32.92 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHH
Q 027153 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYS 200 (227)
Q Consensus 151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~ 200 (227)
+.++++..+.-+..++-+||.++--+.+.||.+-...++....--..|+-
T Consensus 116 isnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip 165 (214)
T COG5196 116 ISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIP 165 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhh
Confidence 45778889999999999999999999999999988887766554444443
No 24
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=82.61 E-value=5.3 Score=31.64 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHH
Q 027153 11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMI 61 (227)
Q Consensus 11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i 61 (227)
...+++=..++...+++-+||+....|+|.+|.+..-++..--...+++.+
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 455666677888999999999999999999999999999888887776644
No 25
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=68.71 E-value=9.1 Score=36.21 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=37.0
Q ss_pred HHHhhheeeEEeccccch-HHHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHH
Q 027153 131 VWLAAAVCFFVALPNHSW-LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 190 (227)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l 190 (227)
+.+++.+..++..++..| .|++..+--.--.+-++--.||...|||-||+--|..-++--
T Consensus 447 L~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 447 LLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 444455554444454444 354443322223334445689999999999999999887643
No 26
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=43.87 E-value=25 Score=33.41 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHH
Q 027153 12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLL 51 (227)
Q Consensus 12 is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l 51 (227)
++..-|.++..+. +...||+.-|||-||+.-|.--.+.-
T Consensus 469 Ln~l~~~vy~FGF-i~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 469 LNSLYNGVYAFGF-IFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHHHHhHHHHHHH-HHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 4445566666554 45689999999999999998776544
No 27
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=43.52 E-value=24 Score=24.49 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhh
Q 027153 156 NAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLL 224 (227)
Q Consensus 156 g~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~ 224 (227)
|.++-.+....++=|-+.--|+| ..-+...+-.+..+|+++- ++++.-++|.+.+.+....+..
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k-~sv~P~~FW~lSl~Gs~ll----l~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAK-KSVVPVAFWYLSLIGSLLL----LIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHH----HHHHHHHcChHHHHHHhcChHH
Confidence 45556666667777766665555 3346777788889999885 5888889999999886655443
No 28
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=26.52 E-value=2.9e+02 Score=22.70 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHH
Q 027153 11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY 59 (227)
Q Consensus 11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~ 59 (227)
.+|+++=..++-..++.-+||++.--+.+.+|.+..-+++...+-...|
T Consensus 115 tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalY 163 (214)
T COG5196 115 TISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALY 163 (214)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhh
Confidence 3677888888889999999999999999999999988877765544433
Done!