Query 027153
Match_columns 227
No_of_seqs 152 out of 1483
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljb_A M2 protein, BM2 protein 29.1 81 0.0028 17.7 4.1 29 5-33 5-33 (35)
2 3bkd_A Transmembrane domain of 11.6 2E+02 0.0067 14.9 3.2 23 6-28 2-24 (26)
3 2kih_A Matrix protein 2; S31N, 10.4 2.8E+02 0.0097 16.0 3.6 25 5-29 5-29 (43)
4 1rzh_M Reaction center protein 8.5 1.9E+02 0.0066 24.5 2.5 36 179-214 261-296 (307)
5 2y69_M Cytochrome C oxidase po 3.7 7.1E+02 0.024 16.2 2.5 19 19-41 51-69 (70)
6 8tfv_A Protein (thanatin); bac 3.4 2.3E+02 0.0079 13.6 -0.1 14 167-180 5-18 (21)
7 2kix_A BM2 protein; channel, t 3.0 7.7E+02 0.026 13.1 3.3 25 9-33 8-32 (33)
8 1v54_M VIIIB, IX, cytochrome C 2.9 9.8E+02 0.033 14.1 3.7 19 18-40 26-44 (46)
9 3s8f_C Cytochrome C oxidase po 2.7 9E+02 0.031 13.3 2.9 17 12-28 11-27 (34)
10 4a2n_B Isoprenylcysteine carbo 2.6 1.1E+03 0.036 17.9 3.0 33 9-41 2-34 (194)
No 1
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=29.09 E-value=81 Score=17.69 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=24.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 027153 5 NSVPLEITYQVLGWISFVAWSVSFYPQVI 33 (227)
Q Consensus 5 ~~~~~~~is~ilG~~~~~~~~~s~iPQi~ 33 (227)
.++|+.+.+.++|..=+..|.+-++-|+.
T Consensus 5 SsDplviaA~IigiLHlilWildrLff~k 33 (35)
T 2ljb_A 5 SSDPLVVAASIIGILHFIAWTIGHLNQIK 33 (35)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 36889999999999999999998887753
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=11.62 E-value=2e+02 Score=14.91 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=19.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q 027153 6 SVPLEITYQVLGWISFVAWSVSF 28 (227)
Q Consensus 6 ~~~~~~is~ilG~~~~~~~~~s~ 28 (227)
++++.....++|..=+..|..-+
T Consensus 2 sDplv~aa~iiGilHLiLwIldr 24 (26)
T 3bkd_A 2 SDPLVVAASIMGILHLILWILDR 24 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHhh
Confidence 67888999999999999998644
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=10.38 E-value=2.8e+02 Score=16.00 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=20.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhH
Q 027153 5 NSVPLEITYQVLGWISFVAWSVSFY 29 (227)
Q Consensus 5 ~~~~~~~is~ilG~~~~~~~~~s~i 29 (227)
.++|+.+...++|..=+..|..-++
T Consensus 5 ssdplv~aa~iiGIlHLiLwildRl 29 (43)
T 2kih_A 5 SSDPLVVAANIIGILHLILWILDRL 29 (43)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999987553
No 4
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=8.49 E-value=1.9e+02 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=32.4
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhccCCcccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVN 214 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~ 214 (227)
+++|+...+..+...+.+.+.+-+++.++-+++|..
T Consensus 261 ~~~~IHr~~l~~av~~~~~saigIvlsG~~~~~w~~ 296 (307)
T 1rzh_M 261 TMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYV 296 (307)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSCHHH
T ss_pred chhHHHHHHHHHHHHHHHHhheEEEEeCccccCHHH
Confidence 468899999999999999999999999998888864
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=3.65 E-value=7.1e+02 Score=16.17 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=10.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCc
Q 027153 19 ISFVAWSVSFYPQVILNFRRKSV 41 (227)
Q Consensus 19 ~~~~~~~~s~iPQi~~N~~~KS~ 41 (227)
..-.+|..+ -++|||+|++
T Consensus 51 L~PagWVLs----hLe~YKk~e~ 69 (70)
T 2y69_M 51 LLPAGWVLY----HLDNYKKSSA 69 (70)
T ss_dssp HHHHHHHHH----THHHHSCC--
T ss_pred HhhHHHHHH----HHHHhccccC
Confidence 333455555 4578888843
No 6
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=3.43 E-value=2.3e+02 Score=13.65 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.8
Q ss_pred ccchhhhhhccCcc
Q 027153 167 YIPQAIMNFRRKST 180 (227)
Q Consensus 167 ~~PQi~~n~~~kst 180 (227)
-+|-|+.|.|.+.+
T Consensus 5 pvpiiycnrrtgkc 18 (21)
T 8tfv_A 5 PVPIIYCNRRTGKC 18 (26)
T ss_dssp CCCCEEEEGGGTEE
T ss_pred cccEEEEcCcccce
Confidence 46778888776654
No 7
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=3.02 E-value=7.7e+02 Score=13.12 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHH
Q 027153 9 LEITYQVLGWISFVAWSVSFYPQVI 33 (227)
Q Consensus 9 ~~~is~ilG~~~~~~~~~s~iPQi~ 33 (227)
+.+-|.++.-.-+..|.+.-+-||.
T Consensus 8 lsi~sfilsalhf~awtighlnqi~ 32 (33)
T 2kix_A 8 LSISSFILSALHFIAWTIGHLNQIK 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777888888777763
No 8
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=2.92 E-value=9.8e+02 Score=14.12 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcC
Q 027153 18 WISFVAWSVSFYPQVILNFRRKS 40 (227)
Q Consensus 18 ~~~~~~~~~s~iPQi~~N~~~KS 40 (227)
+..-.+|.++= +++||+|+
T Consensus 26 ~L~PagWVLsh----L~~YKk~e 44 (46)
T 1v54_M 26 FLLPAGWVLYH----LDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHT----HHHHHTC-
T ss_pred HHhhHHHHHHH----HHHhcccc
Confidence 33334555554 57888884
No 9
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=2.74 E-value=9e+02 Score=13.32 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027153 12 TYQVLGWISFVAWSVSF 28 (227)
Q Consensus 12 is~ilG~~~~~~~~~s~ 28 (227)
...++|..+++.|...+
T Consensus 11 ~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567888888888765
No 10
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=2.57 E-value=1.1e+03 Score=17.93 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCc
Q 027153 9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSV 41 (227)
Q Consensus 9 ~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~ 41 (227)
.|.+.+++=.+.+++|.+.++|=..+..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~~~ 34 (194)
T 4a2n_B 2 NENLWKICFIVMFIIWVFVRKVYGTRAMKNKSK 34 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 366777777778899999999988887775543
Done!