Query 027153
Match_columns 227
No_of_seqs 152 out of 1483
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 09:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027153.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027153hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qtva1 a.71.2.1 (A:524-626) S 8.4 65 0.0048 21.2 1.4 15 26-40 57-71 (103)
2 d2j8cm1 f.26.1.1 (M:1-303) M ( 7.0 1.2E+02 0.0084 23.8 2.5 36 179-214 261-296 (303)
3 d1eysm_ f.26.1.1 (M:) M (mediu 5.6 1.5E+02 0.011 23.2 2.5 35 179-213 260-294 (318)
4 d1y8oa1 a.29.5.1 (A:13-176) Py 3.3 2.9E+02 0.021 19.1 2.3 22 30-51 1-22 (164)
5 d1jm6a1 a.29.5.1 (A:1003-1169) 3.3 3E+02 0.022 19.0 2.4 26 26-51 3-28 (167)
6 d2vv5a1 b.38.1.3 (A:113-179) M 3.1 3.7E+02 0.027 15.1 2.4 28 193-220 3-31 (67)
7 d2i5nl1 f.26.1.1 (L:1-273) L ( 2.9 3.5E+02 0.026 20.4 2.5 35 179-213 225-260 (273)
8 d2j8cl1 f.26.1.1 (L:1-281) L ( 2.8 2.8E+02 0.021 21.1 1.8 35 179-213 225-260 (281)
9 d1eysl_ f.26.1.1 (L:) L (light 2.7 3.5E+02 0.025 20.6 2.2 35 179-213 233-268 (280)
10 d2i5nm1 f.26.1.1 (M:1-323) M ( 2.7 3.2E+02 0.023 21.2 2.0 35 179-213 259-293 (323)
No 1
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.39 E-value=65 Score=21.18 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.5
Q ss_pred HhhHHHHHHHHHhcC
Q 027153 26 VSFYPQVILNFRRKS 40 (227)
Q Consensus 26 ~s~iPQi~~N~~~KS 40 (227)
++.+||.+.+.||..
T Consensus 57 fs~~PqfmfhLRRS~ 71 (103)
T d2qtva1 57 FSLYPQFTYYLRRSQ 71 (103)
T ss_dssp TTTHHHHHHHHHTST
T ss_pred HHhhHHHHHHHhhhh
Confidence 578999999999943
No 2
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.05 E-value=1.2e+02 Score=23.77 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=32.1
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhccCCcccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVN 214 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~ 214 (227)
+++|+......+...+.+.+.+-+++.++..+||..
T Consensus 261 ~~~~IHr~~~~~av~~~~~saigIllsGtvvd~W~~ 296 (303)
T d2j8cm1 261 TMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYV 296 (303)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSCHHH
T ss_pred CchHHHHHHHHHHHHHHHHhheeEEEecccccCHHH
Confidence 678888999999999999999999999998888853
No 3
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.63 E-value=1.5e+02 Score=23.16 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=31.1
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhccCCccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWV 213 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~ 213 (227)
+++|+......+...+.+.+.+-+++.++..++|.
T Consensus 260 ~~~~IHr~~~~~av~~~~~saigIllsGtvvd~W~ 294 (318)
T d1eysm_ 260 TMESIHRWAWWCAVLTVITAGIGILLSGTVVDNWY 294 (318)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSCHH
T ss_pred ccHHHHHHHHHHHHHHHHhhheeEEEeccccccHH
Confidence 67888899999999999999999999998877775
No 4
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.34 E-value=2.9e+02 Score=19.06 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCccCcchhHHHH
Q 027153 30 PQVILNFRRKSVVGLNFDFVLL 51 (227)
Q Consensus 30 PQi~~N~~~KS~eGLS~~f~~l 51 (227)
|+.+..|.+++..++|+.-++-
T Consensus 1 ~~~i~~ya~~~~t~lSL~ql~~ 22 (164)
T d1y8oa1 1 PKQIERYSRFSPSPLSIKQFLD 22 (164)
T ss_dssp CHHHHHHHHSCCCCCBHHHHHH
T ss_pred CHHHHHHHcCCCCCCCHHHHHH
Confidence 7889999999999999987664
No 5
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=3.30 E-value=3e+02 Score=19.04 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHHhcCccCcchhHHHH
Q 027153 26 VSFYPQVILNFRRKSVVGLNFDFVLL 51 (227)
Q Consensus 26 ~s~iPQi~~N~~~KS~eGLS~~f~~l 51 (227)
++-.|+.+..|.+++..++|+.-++-
T Consensus 3 ~~~~~~~I~~ya~~~~tplSL~ql~~ 28 (167)
T d1jm6a1 3 LAGAPKYIEHFSKFSPSPLSMKQFLD 28 (167)
T ss_dssp TTSHHHHHHHHTTSCCCCCBHHHHHT
T ss_pred hhhhHHHHHHHHcCCCCCCCHHHHHH
Confidence 45689999999999999999886654
No 6
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=3.7e+02 Score=15.13 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHhhh-ccCCcccceeccce
Q 027153 193 LGGCTNYSQMIVQS-IDQNSWVNFYGNIG 220 (227)
Q Consensus 193 ~G~~~~~~s~~~~~-~~~~~~~~i~~n~~ 220 (227)
+++++..+.++++. ...+||..+.+-.+
T Consensus 3 lsN~~sGi~i~~~~pf~vGD~I~i~~~~G 31 (67)
T d2vv5a1 3 LSNLAAGVLLVMFRPFRAGEYVDLGGVAG 31 (67)
T ss_dssp HHHHHHHHHHHTTCSSCTTCEEESSSCEE
T ss_pred HHHHHHHhhheeeCCccCCCEEEECCEEE
Confidence 45556666666655 66789987655433
No 7
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.94 E-value=3.5e+02 Score=20.39 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=29.0
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhcc-CCccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSID-QNSWV 213 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~-~~~~~ 213 (227)
+++|+......+...+.+.+.+-+++.++. .++|+
T Consensus 225 ~~~gIHR~~~~~A~~~~~~s~igIllsG~~~~~~W~ 260 (273)
T d2i5nl1 225 GALSIHRLGLFLASNIFLTGAFGTIASGPFWTRGWP 260 (273)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHBTTTBCSCHH
T ss_pred chHHHHHHHHHHHHHHHHHhheEEEEECCcccCChh
Confidence 567788888999999999999999999987 45554
No 8
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.77 E-value=2.8e+02 Score=21.08 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=28.3
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhcc-CCccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSID-QNSWV 213 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~-~~~~~ 213 (227)
+++|+......+...+.+.+.+-+++.++. -++|+
T Consensus 225 ~~~~IHR~~~~~av~~~~~saigIllsGtv~~~~W~ 260 (281)
T d2j8cl1 225 GTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWV 260 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTBTTTBCSCHH
T ss_pred cchHHHHHHHHHHHHHHHHhheeEEEeCCcccCcHH
Confidence 466777888888999999999999999977 45554
No 9
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.72 E-value=3.5e+02 Score=20.60 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=27.5
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhcc-CCccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSID-QNSWV 213 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~-~~~~~ 213 (227)
+++|+......+...+.+.+.+-+++.++. .++|+
T Consensus 233 ~~~~IHr~~~~~a~~~~~~~~igI~lsG~~~~~~w~ 268 (280)
T d1eysl_ 233 GALAIHRLGLFLALSAAFWSAVCILISGPFWTRGWP 268 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTBTTTBCSCSG
T ss_pred chhHHHHHHHHHHHHHHHHhheEEEEeCCcccCChh
Confidence 455666778888888999999999999977 45665
No 10
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.70 E-value=3.2e+02 Score=21.20 Aligned_cols=35 Identities=3% Similarity=0.126 Sum_probs=28.5
Q ss_pred cccccChHHHHHHHHhHHHHHHHHHhhhccCCccc
Q 027153 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWV 213 (227)
Q Consensus 179 st~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~ 213 (227)
+++|+......+...+.+.+.+-+++.++-.+||.
T Consensus 259 ~~~gIHR~~~~~Av~~~~tsaigIllsGt~vdnW~ 293 (323)
T d2i5nm1 259 TIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWY 293 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHBTTTBSCHH
T ss_pred chHHHHHHHHHHHHHHHHHhheeEEEeCCcccCHH
Confidence 45667777788889999999999999998777774
Done!