BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027154
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 29 LADWNSYAASQESSSDSSAFDLEAAVRTTSDKFTGTFNVVSKGV--------RDLPGNFQ 80
L WN Q +S F+ A +T + + N ++ + +DL + +
Sbjct: 17 LNRWN-----QTRQQNSQGFNESA--KTLFSSWADSLNTRAQDIYQTLPVSRQDLVQDQE 69
Query: 81 ASTSNVPSGKSFLYFGLFLAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFF 140
S + + + F FL +G F T PV+ P+KF + +T+G L V +F
Sbjct: 70 PSWFQLSRTERMVLFVCFL-LGATACFTLCTFLFPVLAAKPRKFGLLWTMGSLLFVLAFG 128
Query: 141 ALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAI 200
L GP L H+ ++ERLP ++ + T+Y + + +L++ ++L+++A+ YYAI
Sbjct: 129 VLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLELVAVIYYAI 188
Query: 201 SCFPGGSFGLKFLSSS 216
S FP G+ GL+ LSS+
Sbjct: 189 SYFPFGATGLRMLSSA 204
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 69 SKGVRDLPGN-------FQASTSNVPSGKSFLYFGLFLAVGIFFIFIAFTMFLPVIVLVP 121
S ++P N FQ+S ++ + ++ FG+ L + IA MF PV+VL P
Sbjct: 38 SNDYTEIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAIACFMF-PVLVLKP 96
Query: 122 QKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSY 181
+KF + +T+G L V F ++G + + ERLP+TL +++ T+ ++ + S
Sbjct: 97 RKFVLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKST 156
Query: 182 ILSVLFSVLQVLALAYYAISCFPGG----SFGLKFLSSSL 217
ILS++F VL +L+ Y I+ FP G S G + S SL
Sbjct: 157 ILSIVFGVLHILSFVAYLIAFFPFGTRTVSLGTRMASRSL 196
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 101 VGIFFIFIAFTMFLPVIVLVPQK----FAICFTIGCALTVGSFFALKGPKNQLAHMFSKE 156
+ F I I ++ V++ VP+K FA+ +T G ++GS L GP QL MF
Sbjct: 38 IACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPT 97
Query: 157 RLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFP 204
RL T++ + T+ + H+ L+++F +LQ LAL +Y++S P
Sbjct: 98 RLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLALTWYSLSFIP 145
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 94 YFGLFLAVGIFF-IFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHM 152
+F + G+FF I ++LP + + FA+ +T+G + S L GP QL M
Sbjct: 36 WFAICFVCGVFFSILGTGLLWLPGGI---KLFAVFYTLGNLAALASTCFLMGPVKQLKKM 92
Query: 153 FSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFPGGSFGLKF 212
F RL T++ + + T+ ++ H L+VLF +LQ L++ +Y++S P +
Sbjct: 93 FEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYARDAVIK 152
Query: 213 LSSSLIS 219
SSL+S
Sbjct: 153 CCSSLLS 159
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1
Length = 159
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 116 VIVLVPQK----FAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGT 171
+++ VP+K FA+ +T+G +++GS L GP QL MF RL T++ + T
Sbjct: 53 LLLWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALT 112
Query: 172 VYVSMVLHSYILSVLFSVLQVLALAYYAISCFP 204
+ S L + L+++F +LQ LAL +Y++S P
Sbjct: 113 L-CSAFLWNKGLALIFCILQSLALTWYSLSYIP 144
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1
Length = 159
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 94 YFGLFLAVGIFFIFIAF-TMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHM 152
+F + GIFF F+ ++LP + + FA+ +T+G + S L GP QL M
Sbjct: 36 WFVICFVAGIFFSFLGTGLLWLPNGM---KLFAVFYTLGNLAALASTCFLMGPVKQLKKM 92
Query: 153 FSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFP 204
F RL T+I + +V T+ ++ L++LF +LQ L++ +Y++S P
Sbjct: 93 FETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIP 144
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 94 YFGLFLAVGIFF-IFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHM 152
+F + GIFF I ++LP V + FA+ +T+G + S L GP QL M
Sbjct: 36 WFVICFVAGIFFSILGTGLLWLPNGV---KLFAVFYTLGNLAALASTCFLMGPVKQLKKM 92
Query: 153 FSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFPGGSFGLKF 212
F RL T+I + +V T+ ++ L++LF +LQ L++ +Y++S P +
Sbjct: 93 FETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLK 152
Query: 213 LSSSLIS 219
SS++S
Sbjct: 153 CCSSILS 159
>sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=2 SV=2
Length = 209
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 111 TMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPL--TLISIGSM 168
++ PV++L +KFA+ +++G L S L+G + E P TL ++
Sbjct: 89 ALYAPVLLLRARKFALLWSLGSVLAWASAALLRG-GPACGRLLRGEETPSRSTLGYAAAL 147
Query: 169 VGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFP-GGSFGLKF 212
T+Y ++VL S +L+ L + QV AL Y I P GG L+
Sbjct: 148 GATLYAALVLRSTVLTALGACAQVAALLYALIGLLPWGGVTALRL 192
>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2
SV=1
Length = 157
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 124 FAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYIL 183
FA+ +T+G ++GS L GP QL MF RL T I + S L + L
Sbjct: 63 FAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIAT-ILVLLFFVLTLCSAFLWNKGL 121
Query: 184 SVLFSVLQVLALAYYAISCFP 204
+++F +LQ LAL +Y++S P
Sbjct: 122 ALIFCILQSLALTWYSLSYIP 142
>sp|A5VBY5|MSCL_SPHWW Large-conductance mechanosensitive channel OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=mscL
PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 61 FTGTFNVVSKGVR--DLPGNFQASTSNVP----SGKSFLYFGLFLAVGIFFIFIAFTMFL 114
FTG + S +R ++P NF S ++ +G + FG F+ V + F+ IAF +FL
Sbjct: 46 FTGGLDFSSHFIRLGEIPANFTGSVTSYADLKNAGVPLIGFGQFITVAVNFLLIAFVVFL 105
Query: 115 PVIVLVPQKF 124
+V Q+F
Sbjct: 106 --VVRAVQRF 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,270,245
Number of Sequences: 539616
Number of extensions: 2758395
Number of successful extensions: 10612
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10591
Number of HSP's gapped (non-prelim): 30
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)