Query 027154
Match_columns 227
No_of_seqs 135 out of 377
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 100.0 1.3E-49 2.9E-54 337.0 16.6 172 49-221 2-174 (175)
2 PF04178 Got1: Got1/Sft2-like 100.0 4E-35 8.7E-40 234.5 13.0 114 102-215 3-117 (118)
3 COG5102 SFT2 Membrane protein 100.0 6.7E-32 1.4E-36 229.4 15.0 158 65-223 41-198 (201)
4 KOG1743 Ferric reductase-like 91.4 0.66 1.4E-05 38.8 6.2 106 99-213 14-130 (137)
5 COG5120 GOT1 Membrane protein 85.0 1.6 3.4E-05 36.0 4.3 65 100-173 15-79 (129)
6 TIGR02908 CoxD_Bacillus cytoch 61.4 47 0.001 27.0 7.1 65 146-210 14-86 (110)
7 PRK10582 cytochrome o ubiquino 42.5 1.2E+02 0.0026 24.4 6.6 47 156-202 14-68 (109)
8 PF13347 MFS_2: MFS/sugar tran 41.1 2.9E+02 0.0062 25.4 11.4 81 114-199 252-334 (428)
9 PF14143 YrhC: YrhC-like prote 40.1 1.1E+02 0.0024 23.0 5.7 56 97-155 16-71 (72)
10 COG2917 Intracellular septatio 39.8 2.3E+02 0.0049 25.0 8.4 70 122-193 76-167 (180)
11 PRK15033 tricarballylate utili 39.8 3.7E+02 0.0081 26.3 11.3 85 122-207 272-360 (389)
12 PF10754 DUF2569: Protein of u 39.1 2.2E+02 0.0047 23.4 9.8 22 89-110 4-25 (149)
13 KOG3393 Predicted membrane pro 37.6 1.4E+02 0.0031 25.7 6.6 76 65-143 68-147 (157)
14 TIGR02847 CyoD cytochrome o ub 36.1 1.8E+02 0.004 22.8 6.6 45 158-202 5-57 (96)
15 COG5547 Small integral membran 34.6 1.6E+02 0.0035 21.7 5.6 40 155-194 6-45 (62)
16 PRK11588 hypothetical protein; 33.9 5.1E+02 0.011 26.2 11.5 68 120-193 338-410 (506)
17 PHA02764 hypothetical protein; 32.4 2.2E+02 0.0047 27.8 7.7 89 115-209 168-258 (399)
18 PF05255 UPF0220: Uncharacteri 31.9 1.3E+02 0.0029 25.7 5.7 60 83-143 92-156 (166)
19 PF10031 DUF2273: Small integr 31.4 1.4E+02 0.0029 20.9 4.7 40 152-191 3-42 (51)
20 PF05975 EcsB: Bacterial ABC t 30.1 4.7E+02 0.01 24.6 12.6 80 112-192 118-198 (386)
21 PF12221 HflK_N: Bacterial mem 29.8 17 0.00036 24.7 -0.1 19 47-65 20-38 (42)
22 PF05915 DUF872: Eukaryotic pr 28.6 1.7E+02 0.0037 23.6 5.5 22 92-113 44-65 (115)
23 PF09323 DUF1980: Domain of un 27.9 3.7E+02 0.008 22.6 7.8 53 94-147 3-55 (182)
24 PF05977 MFS_3: Transmembrane 26.7 6.4E+02 0.014 25.0 12.9 61 112-177 239-304 (524)
25 PF04647 AgrB: Accessory gene 26.5 3.7E+02 0.008 22.2 7.9 15 139-153 114-128 (185)
26 COG3125 CyoD Heme/copper-type 26.1 2.8E+02 0.006 22.6 6.3 43 158-200 18-68 (111)
27 PF04235 DUF418: Protein of un 24.5 3.8E+02 0.0082 21.6 11.9 20 156-175 81-100 (163)
28 TIGR02901 QoxD cytochrome aa3 24.2 3.3E+02 0.0072 21.3 6.3 42 160-201 9-58 (94)
29 PF10003 DUF2244: Integral mem 24.1 2.3E+02 0.0049 23.1 5.6 32 166-197 20-51 (140)
30 TIGR02484 CitB CitB domain pro 22.5 7.3E+02 0.016 24.2 11.3 82 124-207 254-341 (372)
31 KOG2927 Membrane component of 22.5 1.4E+02 0.0031 29.0 4.6 29 107-136 201-229 (372)
32 PF06210 DUF1003: Protein of u 22.0 3.2E+02 0.0069 21.8 5.9 34 118-151 29-63 (108)
33 PF03825 Nuc_H_symport: Nucleo 21.4 7E+02 0.015 23.5 11.6 70 88-162 5-74 (400)
34 TIGR00400 mgtE Mg2+ transporte 21.0 6.7E+02 0.015 24.2 9.0 85 87-180 280-383 (449)
35 COG5438 Predicted multitransme 20.8 6.1E+02 0.013 24.9 8.5 37 112-148 167-203 (385)
36 KOG1419 Voltage-gated K+ chann 20.7 3.7E+02 0.0081 27.9 7.3 63 141-203 73-143 (654)
37 PRK12585 putative monovalent c 20.6 3.8E+02 0.0082 24.0 6.5 46 96-141 10-57 (197)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-49 Score=336.99 Aligned_cols=172 Identities=40% Similarity=0.648 Sum_probs=159.1
Q ss_pred cHHHHhcccccccccceeee-ccccccCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Q 027154 49 DLEAAVRTTSDKFTGTFNVV-SKGVRDLPGNFQASTSNVPSGKSFLYFGLFLAVGIFFIFIAFTMFLPVIVLVPQKFAIC 127 (227)
Q Consensus 49 ~~~~~~r~~~~~~~~~~~~~-s~g~~~~~~~~qs~~~sLs~~qRl~gF~~c~~~G~~f~~ls~~~flPli~l~P~KFAll 127 (227)
|.+.+.+++||..+|+-..- .++.++.|++.|++.++||++||+++|++|++.|++|++++.++| |+.+..|+|||++
T Consensus 2 d~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf-~v~~~~~~kFal~ 80 (175)
T KOG2887|consen 2 DKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLF-PVLVVSPRKFALL 80 (175)
T ss_pred chhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccccceeehh
Confidence 55667788888888876433 267778888999999999999999999999999999999998764 8888899999999
Q ss_pred HhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 027154 128 FTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFPGGS 207 (227)
Q Consensus 128 fTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ~~AliwY~lSYiPgGr 207 (227)
||+||+++++||+||+||++|+|||++|+|+++|+.|++++++|||+|+++||++|+++|+|+|++|++||++|||||||
T Consensus 81 ~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslSyiP~g~ 160 (175)
T KOG2887|consen 81 YTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLSYIPFGR 160 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 027154 208 FGLKFLSSSLISTI 221 (227)
Q Consensus 208 ~~lk~~~~~~~s~~ 221 (227)
+|++++.+++.+..
T Consensus 161 ~gv~~~~s~~~~s~ 174 (175)
T KOG2887|consen 161 SGVSKLSSAFTSSL 174 (175)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999998763
No 2
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=100.00 E-value=4e-35 Score=234.48 Aligned_cols=114 Identities=43% Similarity=0.684 Sum_probs=106.3
Q ss_pred HHHHHHHH-HHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 027154 102 GIFFIFIA-FTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHS 180 (227)
Q Consensus 102 G~~f~~ls-~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s 180 (227)
|++|++++ +..++|++..+|+|||++||+||+++++|++||+||++|+|+|++|+|+++|++|++++++|+|+++++|+
T Consensus 3 G~~~~~l~~~~~~~~~~~~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~ 82 (118)
T PF04178_consen 3 GIICFFLSLIFFFLGVLLFFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKS 82 (118)
T ss_pred ehHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556 33457888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 027154 181 YILSVLFSVLQVLALAYYAISCFPGGSFGLKFLSS 215 (227)
Q Consensus 181 ~iLtll~~ivQ~~AliwY~lSYiPgGr~~lk~~~~ 215 (227)
++++++++++|++|++||++||||+||+++|.+++
T Consensus 83 ~~l~llf~~~q~~al~wy~~s~iP~g~~~~~~~~~ 117 (118)
T PF04178_consen 83 YGLTLLFSIFQFPALIWYLLSYIPFGRPGLKKFFS 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhc
Confidence 99999999999999999999999999999999876
No 3
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.98 E-value=6.7e-32 Score=229.35 Aligned_cols=158 Identities=28% Similarity=0.395 Sum_probs=142.4
Q ss_pred eeeeccccccCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhc
Q 027154 65 FNVVSKGVRDLPGNFQASTSNVPSGKSFLYFGLFLAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKG 144 (227)
Q Consensus 65 ~~~~s~g~~~~~~~~qs~~~sLs~~qRl~gF~~c~~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~G 144 (227)
.+.....-.|+...+|+..++|+++||.+.|.+|+..+..|+.++..| +|++.++|+||.++||+||++++.++++|.|
T Consensus 41 yq~~pt~~~dl~~~~q~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fm-fpVl~lkPrkFiLlwTmgslLfvl~Fg~l~G 119 (201)
T COG5102 41 YQMFPTRKYDLEHYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFM-FPVLRLKPRKFILLWTMGSLLFVLMFGFLLG 119 (201)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhcCccceeeehhHHHHHHHHHHHHHHh
Confidence 444444445666788999999999999999999955555566555555 4999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Q 027154 145 PKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLALAYYAISCFPGGSFGLKFLSSSLISTILR 223 (227)
Q Consensus 145 P~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ~~AliwY~lSYiPgGr~~lk~~~~~~~s~~~~ 223 (227)
|.+|+||+.++||+|.+.-|+++..+|+|+++..|+++|.|.|+++|+++.++|.++|||+|.++++.+.++..++..+
T Consensus 120 f~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~~k~k~t~L~i~f~~l~vvsfi~y~itffPfGt~gvs~~~sm~~~s~~~ 198 (201)
T COG5102 120 FRAYLEGLTSKERLPHSSWFFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFPFGTSGVSSIISMFFKSLSN 198 (201)
T ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888765
No 4
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=91.43 E-value=0.66 Score=38.80 Aligned_cols=106 Identities=21% Similarity=0.368 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHH----H
Q 027154 99 LAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVY----V 174 (227)
Q Consensus 99 ~~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy----~ 174 (227)
.+.|++|++++..++.. -.+-++||++.+.+..++.|.++-+.-.++++|.--|+.|.+....+|+ .
T Consensus 14 TgfG~ff~l~Gii~ffD---------~aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~wPi~ 84 (137)
T KOG1743|consen 14 TGFGVFFFLFGIILFFD---------KALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFGWPIF 84 (137)
T ss_pred echhHHHHHHHHHHHHh---------hHHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHhhHHH
Confidence 45678888777655432 2456899999999999999999999999999999999999999998884 6
Q ss_pred HHHHhhHHHHHHHH-----HHHHHHHHHH--HhhcCCCchhHHHHH
Q 027154 175 SMVLHSYILSVLFS-----VLQVLALAYY--AISCFPGGSFGLKFL 213 (227)
Q Consensus 175 al~~~s~iLtll~~-----ivQ~~AliwY--~lSYiPgGr~~lk~~ 213 (227)
.+.+..|.+-+++- +++++--+=+ .+-+.|+=|.-+..+
T Consensus 85 Gm~lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl 130 (137)
T KOG1743|consen 85 GMILETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRL 130 (137)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHh
Confidence 67777777666654 3344321111 245677766655443
No 5
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=84.96 E-value=1.6 Score=36.00 Aligned_cols=65 Identities=15% Similarity=0.388 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 027154 100 AVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVY 173 (227)
Q Consensus 100 ~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy 173 (227)
.+|..++.++..++. -+ .+-.+||++.+.+.+.+.|..|-.--...|+|+.-++.|.....+++|
T Consensus 15 ~~Gflffl~Gif~ff----Dr-----aLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~ 79 (129)
T COG5120 15 SIGFLFFLVGIFLFF----DR-----ALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLY 79 (129)
T ss_pred ehhHHHHHHHHHHHh----hh-----HHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHH
Confidence 355566556654432 12 356799999999999999999888888899999999999999999886
No 6
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=61.36 E-value=47 Score=26.98 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 027154 146 KNQLAHMFSKERLPLTLISIGSMVGTVYVSMVL--------HSYILSVLFSVLQVLALAYYAISCFPGGSFGL 210 (227)
Q Consensus 146 ~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~--------~s~iLtll~~ivQ~~AliwY~lSYiPgGr~~l 210 (227)
..|-|+--+++..-+.+.|+.|+++|+..=... -..+..+++.++|++-=++|-+=-=.-|++-+
T Consensus 14 ~~~~~~~~~~~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~ 86 (110)
T TIGR02908 14 LEFQKAKNAEEMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVP 86 (110)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchH
Confidence 345566666777788999999999998643332 12456788999999988888655444666544
No 7
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=42.49 E-value=1.2e+02 Score=24.44 Aligned_cols=47 Identities=17% Similarity=-0.009 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHHHHHHHH-HH-----h--hHHHHHHHHHHHHHHHHHHHhhc
Q 027154 156 ERLPLTLISIGSMVGTVYVSM-VL-----H--SYILSVLFSVLQVLALAYYAISC 202 (227)
Q Consensus 156 ~Rl~~TivYl~Sli~TLy~al-~~-----~--s~iLtll~~ivQ~~AliwY~lSY 202 (227)
+..-+-+.|+.|+++|+..-. +. + .+...+++.++|++.-++|-+=-
T Consensus 14 s~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~FLHl 68 (109)
T PRK10582 14 SVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHM 68 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455677899999999975333 22 1 24456678899999998886543
No 8
>PF13347 MFS_2: MFS/sugar transport protein
Probab=41.09 E-value=2.9e+02 Score=25.36 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=47.2
Q ss_pred HhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Q 027154 114 LPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVL--HSYILSVLFSVLQ 191 (227)
Q Consensus 114 lPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~--~s~iLtll~~ivQ 191 (227)
.--.+.++...+.+..++++..+.+..+. + .+.+-++++| .....++...+..+...+.. +...+.++.++..
T Consensus 252 ~~~vl~~~~~~~~~~~~~~~~~~v~~~~~-~---~l~~r~gk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 326 (428)
T PF13347_consen 252 FTYVLGNEGLISIFMLIFFVASIVGSPLW-G---RLSKRFGKKK-VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAG 326 (428)
T ss_pred HHHHhcCchhhHHHHHHHHHHHHHHHHHH-H---HHHHHcccee-ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 34445677777777777777766655544 2 2333334444 56667777777777666665 3444555555555
Q ss_pred HHHHHHHH
Q 027154 192 VLALAYYA 199 (227)
Q Consensus 192 ~~AliwY~ 199 (227)
+..-..+.
T Consensus 327 i~~~~~~~ 334 (428)
T PF13347_consen 327 IGYGAFFV 334 (428)
T ss_pred hhhccccc
Confidence 55544443
No 9
>PF14143 YrhC: YrhC-like protein
Probab=40.12 E-value=1.1e+02 Score=23.04 Aligned_cols=56 Identities=18% Similarity=0.295 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCC
Q 027154 97 LFLAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSK 155 (227)
Q Consensus 97 ~c~~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~ 155 (227)
+++++|.++.+... +|.-...+.+-.++...-.++..+|+.|.+=-+++-|++.+.
T Consensus 16 vLLAvs~FlYiG~v---iP~~~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E~ 71 (72)
T PF14143_consen 16 VLLAVSTFLYIGTV---IPIGAKETAQKYIMMGAICIFLAGAFLFFRRSKKYQKKLEEE 71 (72)
T ss_pred HHHHHHHHHHHHhh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35677777765543 587777777777777777788888888887777766666554
No 10
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=39.80 E-value=2.3e+02 Score=25.01 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=54.0
Q ss_pred hhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCC-chH----------HHHHHHHHHHHHHHHHHHH-----------h
Q 027154 122 QKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKE-RLP----------LTLISIGSMVGTVYVSMVL-----------H 179 (227)
Q Consensus 122 ~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~-Rl~----------~TivYl~Sli~TLy~al~~-----------~ 179 (227)
.|=.+.|.+..+..++|-.+.+-| -+|.|++++ |+| -.+.|+.+.++-+|++..+ .
T Consensus 76 wK~TIi~~lFa~~Llgs~~~~~k~--lik~~lg~~l~Lp~~~W~~Ln~~W~~FFlf~ai~N~yV~~~fs~d~WV~FKvfG 153 (180)
T COG2917 76 WKPTIIYWLFALVLLGSQFLFKKP--LIKRMLGKELQLPEEVWRKLNLRWALFFLFCAIANEYVARNFSTDTWVNFKVFG 153 (180)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeehhh
Confidence 377899999999988876666544 577888765 443 4567888999999999875 4
Q ss_pred hHHHHHHHHHHHHH
Q 027154 180 SYILSVLFSVLQVL 193 (227)
Q Consensus 180 s~iLtll~~ivQ~~ 193 (227)
...++++|.++|..
T Consensus 154 ~~~ltlvf~l~q~~ 167 (180)
T COG2917 154 LTPLTLIFTLIQGP 167 (180)
T ss_pred hhHHHHHHHHHHHH
Confidence 56789999999975
No 11
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=39.77 E-value=3.7e+02 Score=26.29 Aligned_cols=85 Identities=14% Similarity=0.001 Sum_probs=42.7
Q ss_pred hhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCc-hHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHH
Q 027154 122 QKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKER-LPLTLISIGSMVGTVYVSMVL---HSYILSVLFSVLQVLALAY 197 (227)
Q Consensus 122 ~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~R-l~~TivYl~Sli~TLy~al~~---~s~iLtll~~ivQ~~Aliw 197 (227)
...-++.++|-|..+.+..-|.--+...+..-+..+ ...=-.|++.+.+|=...+.+ +..-...+...+ -+..++
T Consensus 272 s~~klLg~vGgi~LliG~~gl~~~~~R~d~~~~~~~~~~~D~~Fl~lL~lv~~TGL~~~~~R~t~am~~~l~l-HL~~V~ 350 (389)
T PRK15033 272 SLPVLLGTLGGIGLLIGPAGLLWLNLRRHPLHGDAAQKPMDRGFIALLFLTSASGLALLAGRDTSAMALLLAL-HLGVVM 350 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH-HHHHHH
Confidence 457788999999888874333323333322221111 111223555555555555433 332222222222 345567
Q ss_pred HHhhcCCCch
Q 027154 198 YAISCFPGGS 207 (227)
Q Consensus 198 Y~lSYiPgGr 207 (227)
..+-|.||++
T Consensus 351 ~LF~~lPysK 360 (389)
T PRK15033 351 ALFLTLPYGK 360 (389)
T ss_pred HHHHHhhHHH
Confidence 7777899985
No 12
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=39.15 E-value=2.2e+02 Score=23.39 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 027154 89 GKSFLYFGLFLAVGIFFIFIAF 110 (227)
Q Consensus 89 ~qRl~gF~~c~~~G~~f~~ls~ 110 (227)
.||+.|+.+..++|.++..+..
T Consensus 4 ~~~IGGWL~lp~iglils~l~~ 25 (149)
T PF10754_consen 4 PQGIGGWLILPAIGLILSPLST 25 (149)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 4788899998888888766554
No 13
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=37.59 E-value=1.4e+02 Score=25.72 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=40.3
Q ss_pred eeeeccccccCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcch---hHHHHHhHhHHHHHhHhH
Q 027154 65 FNVVSKGVRDLPGNFQASTSNVPSGKSFLYFGLFLAVGIFFIFIAF-TMFLPVIVLVPQ---KFAICFTIGCALTVGSFF 140 (227)
Q Consensus 65 ~~~~s~g~~~~~~~~qs~~~sLs~~qRl~gF~~c~~~G~~f~~ls~-~~flPli~l~P~---KFAllfTlGsil~l~S~~ 140 (227)
+|.++|+=.+ +.--++..++.++-|+..|+.+..+-.=+ .-++ +++...++-... -+++..=++|++++.|..
T Consensus 68 VNaI~~~~vs--gds~a~g~sga~~AR~wLfiGF~l~fgsL-ias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~ 144 (157)
T KOG3393|consen 68 VNAISNSQVS--GDSYAEGCSGARGARIWLFIGFALLFGSL-IASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSL 144 (157)
T ss_pred heccccceec--CCcccccccccchhhhHHHHHHHHHHhhh-hhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHH
Confidence 3445444322 33335667888999988776542211111 1121 222222222211 367777789999998887
Q ss_pred Hhh
Q 027154 141 ALK 143 (227)
Q Consensus 141 FL~ 143 (227)
.++
T Consensus 145 v~k 147 (157)
T KOG3393|consen 145 VYK 147 (157)
T ss_pred HHh
Confidence 764
No 14
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=36.05 E-value=1.8e+02 Score=22.81 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHh-------hHHHHHHHHHHHHHHHHHHHhhc
Q 027154 158 LPLTLISIGSMVGTVYV-SMVLH-------SYILSVLFSVLQVLALAYYAISC 202 (227)
Q Consensus 158 l~~TivYl~Sli~TLy~-al~~~-------s~iLtll~~ivQ~~AliwY~lSY 202 (227)
.-+-+.|+.|+++|+.. .++.. .+...+++.++|++.-+.|-+=-
T Consensus 5 k~yviGFiLsliLT~i~F~~v~~~~~~~~~~~~~i~~~A~iQi~vqL~~FlHl 57 (96)
T TIGR02847 5 KSYLIGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIVLAVVQILVHLVFFLHL 57 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567899999999743 33331 34567778899999988886543
No 15
>COG5547 Small integral membrane protein [Function unknown]
Probab=34.56 E-value=1.6e+02 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027154 155 KERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVLA 194 (227)
Q Consensus 155 ~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ~~A 194 (227)
+-|.|--...++-+++-++.++.+-+++++++++.+-+-.
T Consensus 6 ~fkypIIgglvglliAili~t~GfwKtilviil~~lGv~i 45 (62)
T COG5547 6 KFKYPIIGGLVGLLIAILILTFGFWKTILVIILILLGVYI 45 (62)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777888889999999999999988776543
No 16
>PRK11588 hypothetical protein; Provisional
Probab=33.88 E-value=5.1e+02 Score=26.16 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=42.6
Q ss_pred cchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhc-----CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027154 120 VPQKFAICFTIGCALTVGSFFALKGPKNQLAHMF-----SKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQVL 193 (227)
Q Consensus 120 ~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~-----s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ~~ 193 (227)
+|++++=.|.=|. --+.+.+++.|.-+++.-++ +....+-|++|..+-.+. .++..+..+...++|.+
T Consensus 338 ~~~~i~~~f~~Ga-~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~-----~lp~~~~ai~m~i~~~~ 410 (506)
T PRK11588 338 TVNTMASSFTEGA-RMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAIS-----GLPDAVSAWFMLLFQSV 410 (506)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHH
Confidence 4555555554442 24456777888888888888 666677888887773333 44566666666666643
No 17
>PHA02764 hypothetical protein; Provisional
Probab=32.38 E-value=2.2e+02 Score=27.83 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=57.8
Q ss_pred hhhhhcchhHHHHHhHhHHHHH--hHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027154 115 PVIVLVPQKFAICFTIGCALTV--GSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQV 192 (227)
Q Consensus 115 Pli~l~P~KFAllfTlGsil~l--~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ~ 192 (227)
|.+-...+.|.+-.|+-+.+.+ ..+.|..-|. +...=....+--+-+.|++|-..|.....+..-.=+.+++++
T Consensus 168 ~s~n~~~~~f~~snt~~~a~~~~l~~~~fi~a~~-y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~sy~n~~il~~~--- 243 (399)
T PHA02764 168 KSFNFQYQNFTISNTLLSALLFDLSAFIFINAIS-YIAGEIKNIKKSSMIGYFVSYGIVAILSIIDSYSNLNILFAL--- 243 (399)
T ss_pred cceeEEEcceeehHHHHHHHHHHHHHHHHhccHH-HHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH---
Confidence 5555566788888888775543 3344445553 333333334445678999999999888777543346666665
Q ss_pred HHHHHHHhhcCCCchhH
Q 027154 193 LALAYYAISCFPGGSFG 209 (227)
Q Consensus 193 ~AliwY~lSYiPgGr~~ 209 (227)
+..|| ++|.|-..+-
T Consensus 244 -~~~w~-~~y~~~~~~~ 258 (399)
T PHA02764 244 -MPIWF-FSYMPIANKI 258 (399)
T ss_pred -HHHHH-Hhheeeecch
Confidence 89999 5888876543
No 18
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=31.87 E-value=1.3e+02 Score=25.74 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=33.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhh----cchhHHHHHhHhHHHHHhHhHHhh
Q 027154 83 TSNVPSGKSFLYFGLFLAVGIFFIFIAF-TMFLPVIVL----VPQKFAICFTIGCALTVGSFFALK 143 (227)
Q Consensus 83 ~~sLs~~qRl~gF~~c~~~G~~f~~ls~-~~flPli~l----~P~KFAllfTlGsil~l~S~~FL~ 143 (227)
.....++.|+..|+.+. +++-....|. +++.+.+.- .+.--++---+.|++++.|...|+
T Consensus 92 ~~~~~~~aR~~LFigf~-l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~ 156 (166)
T PF05255_consen 92 GCGGAWRARLWLFIGFA-LSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLW 156 (166)
T ss_pred CCchhHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 44567889987775432 2222222232 233333222 112356667789999999888775
No 19
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.43 E-value=1.4e+02 Score=20.90 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=28.8
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027154 152 MFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVLQ 191 (227)
Q Consensus 152 M~s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~ivQ 191 (227)
..++.|-...-+-++-+++.++..+.+-++++++++.++=
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~iG 42 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFWKTLFILLFAAIG 42 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665566666777777888888888888888877653
No 20
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=30.09 E-value=4.7e+02 Score=24.57 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHhhhhh-cchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 027154 112 MFLPVIVL-VPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVLHSYILSVLFSVL 190 (227)
Q Consensus 112 ~flPli~l-~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s~iLtll~~iv 190 (227)
...|+... .....+-...+.-.+..+-...+..=....++- .+.|..-...+.+.-...+|..+........++..++
T Consensus 118 ll~Pl~~~~~~~~~~~~~~~~~~l~~lK~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (386)
T PF05975_consen 118 LLLPLLMQVYGFSFWEFLLLLLFLLALKWWNLLLKWQELRFQ-PKWRRWKRLLRLILNALILYLLLWLSPWLLLILALLL 196 (386)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577762 223444445555555555555555555444444 6678888899999999999999988765544444444
Q ss_pred HH
Q 027154 191 QV 192 (227)
Q Consensus 191 Q~ 192 (227)
-+
T Consensus 197 ~~ 198 (386)
T PF05975_consen 197 LI 198 (386)
T ss_pred HH
Confidence 33
No 21
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=29.83 E-value=17 Score=24.70 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=17.1
Q ss_pred cccHHHHhcccccccccce
Q 027154 47 AFDLEAAVRTTSDKFTGTF 65 (227)
Q Consensus 47 ~~~~~~~~r~~~~~~~~~~ 65 (227)
.+|||+.+|.+++++.+-|
T Consensus 20 PPDLdel~r~l~~kl~~~f 38 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGGLF 38 (42)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 7999999999999988765
No 22
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.61 E-value=1.7e+02 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027154 92 FLYFGLFLAVGIFFIFIAFTMF 113 (227)
Q Consensus 92 l~gF~~c~~~G~~f~~ls~~~f 113 (227)
+..-+.++++|.++++++..++
T Consensus 44 I~la~~Lli~G~~li~~g~l~~ 65 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445777888877776544
No 23
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=27.86 E-value=3.7e+02 Score=22.64 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHH
Q 027154 94 YFGLFLAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKN 147 (227)
Q Consensus 94 gF~~c~~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~ 147 (227)
-+.++++.|++++-+-..= --...++|+-+-+++--+-++.+.+..-+..-.+
T Consensus 3 r~liL~~~~~l~~~l~~sG-~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~ 55 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSG-KILLYIHPRYIPLLYFAAILLLILAIVQLWRWFR 55 (182)
T ss_pred HHHHHHHHHHHHHHHHHhC-cHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555665554333211 1123469999999888888888877766655433
No 24
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=26.67 E-value=6.4e+02 Score=24.97 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHhhhh-----hcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 027154 112 MFLPVIV-----LVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMV 177 (227)
Q Consensus 112 ~flPli~-----l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~ 177 (227)
..+|++. ..+.-|+++.+...+-.+++...+. .+++-++++|++.....+ .-+.++..++.
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~----~l~~~~~~~~lv~~~~~~-~a~~~~~lal~ 304 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLP----RLRRRLSSRRLVLLASLL-FALALLLLALS 304 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----HhhcccCcchhhHHHHHH-HHHHHHHHhcc
Confidence 3467665 3677888888777777666665432 245556667765443333 23334444444
No 25
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=26.54 E-value=3.7e+02 Score=22.19 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=9.6
Q ss_pred hHHhhcHHHHHhhhc
Q 027154 139 FFALKGPKNQLAHMF 153 (227)
Q Consensus 139 ~~FL~GP~~qlk~M~ 153 (227)
.....+|...-++-.
T Consensus 114 ~i~~~aPv~~~~kpl 128 (185)
T PF04647_consen 114 IIIIYAPVDTPNKPL 128 (185)
T ss_pred HHHHhcccccccCcC
Confidence 445678876666655
No 26
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=26.10 E-value=2.8e+02 Score=22.63 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHh
Q 027154 158 LPLTLISIGSMVGTVYVSMVL--------HSYILSVLFSVLQVLALAYYAI 200 (227)
Q Consensus 158 l~~TivYl~Sli~TLy~al~~--------~s~iLtll~~ivQ~~AliwY~l 200 (227)
.-+.+.|+.|+++|+..-... -..+..+.++++|++-=+.|-+
T Consensus 18 k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFl 68 (111)
T COG3125 18 KSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFL 68 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999998643321 3456788899999987777654
No 27
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=24.48 E-value=3.8e+02 Score=21.63 Aligned_cols=20 Identities=35% Similarity=0.482 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 027154 156 ERLPLTLISIGSMVGTVYVS 175 (227)
Q Consensus 156 ~Rl~~TivYl~Sli~TLy~a 175 (227)
+|+..-+..++-|.+|.|.+
T Consensus 81 ~~~~~~l~~~GrmaLT~Yi~ 100 (163)
T PF04235_consen 81 QRLLRPLAAVGRMALTNYIL 100 (163)
T ss_pred cHHHHHHHHHhhHHHHHHHH
Confidence 44556666667777766654
No 28
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=24.22 E-value=3.3e+02 Score=21.26 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHH-HHHH-------hhHHHHHHHHHHHHHHHHHHHhh
Q 027154 160 LTLISIGSMVGTVYV-SMVL-------HSYILSVLFSVLQVLALAYYAIS 201 (227)
Q Consensus 160 ~TivYl~Sli~TLy~-al~~-------~s~iLtll~~ivQ~~AliwY~lS 201 (227)
+.+.|+.|+++|+.. .++. ......+++.++|++--+.|-+=
T Consensus 9 yviGFiLSiiLT~i~F~~v~~~~~~~~~~~~~i~~lA~iQi~VqL~~FLH 58 (94)
T TIGR02901 9 HVNGFILSLLLTFLALWVALYSDLPLAMGLTIIIIFAFIQAGLQLIMFMH 58 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHhee
Confidence 457899999999643 3322 12345667789999888877543
No 29
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=24.08 E-value=2.3e+02 Score=23.14 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027154 166 GSMVGTVYVSMVLHSYILSVLFSVLQVLALAY 197 (227)
Q Consensus 166 ~Sli~TLy~al~~~s~iLtll~~ivQ~~Aliw 197 (227)
..+.++.-.++.+.....++.|+.++++++.|
T Consensus 20 ~~~~~~~a~~f~~~GaW~Vl~F~glev~~l~~ 51 (140)
T PF10003_consen 20 AAVSLIIAIAFLLMGAWPVLPFAGLEVLALWY 51 (140)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 33334444555566778999999999776654
No 30
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=22.47 E-value=7.3e+02 Score=24.17 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHhHhHHHHHhHhHHhhcHHHHHhhhc--CCCchHHHHHHHHHHH---HHHHHHHHHhhHH-HHHHHHHHHHHHHHH
Q 027154 124 FAICFTIGCALTVGSFFALKGPKNQLAHMF--SKERLPLTLISIGSMV---GTVYVSMVLHSYI-LSVLFSVLQVLALAY 197 (227)
Q Consensus 124 FAllfTlGsil~l~S~~FL~GP~~qlk~M~--s~~Rl~~TivYl~Sli---~TLy~al~~~s~i-Ltll~~ivQ~~Aliw 197 (227)
.-++=++|-|..+.+..-|..-+...+..- +......=-.+++-+. +|=+....++.+. +.. ...+.. ..++
T Consensus 254 pklLG~~GGi~Ll~G~~~l~~l~~R~~~~~~~~~~~~~~D~~fl~lL~lv~~TGl~l~~~R~t~~m~~-ll~lHL-g~V~ 331 (372)
T TIGR02484 254 PVILGLVGGVAMLAGAAGLSGLEARADPEPLKTPAMLRSDRFLLGQLALLAGTGLALLALRDTPAMGL-LLALHL-GAVA 331 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHHH-HHHH
Confidence 456777888877777776666666554422 1112212222222222 2223333444444 344 334443 4567
Q ss_pred HHhhcCCCch
Q 027154 198 YAISCFPGGS 207 (227)
Q Consensus 198 Y~lSYiPgGr 207 (227)
..+-|.||++
T Consensus 332 ~lF~~lPysK 341 (372)
T TIGR02484 332 GAFLGLPFSK 341 (372)
T ss_pred HHHHHccHHH
Confidence 7777899995
No 31
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=1.4e+02 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhcchhHHHHHhHhHHHHH
Q 027154 107 FIAFTMFLPVIVLVPQKFAICFTIGCALTV 136 (227)
Q Consensus 107 ~ls~~~flPli~l~P~KFAllfTlGsil~l 136 (227)
.+++.+| |+.-...|+=...+++|-..++
T Consensus 201 tlaivLF-PLWP~~mR~gvyY~sig~~gfl 229 (372)
T KOG2927|consen 201 TLAIVLF-PLWPRRMRQGVYYLSIGAGGFL 229 (372)
T ss_pred HHHHHhc-ccCcHHHhcceeeeecchhHHH
Confidence 3444333 6655565676666666554333
No 32
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.96 E-value=3.2e+02 Score=21.79 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=27.3
Q ss_pred hhcchhHHHHHhHhHHH-HHhHhHHhhcHHHHHhh
Q 027154 118 VLVPQKFAICFTIGCAL-TVGSFFALKGPKNQLAH 151 (227)
Q Consensus 118 ~l~P~KFAllfTlGsil-~l~S~~FL~GP~~qlk~ 151 (227)
...|.+|.++..+-|+. ++.+...+++-.+|=++
T Consensus 29 ~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~ 63 (108)
T PF06210_consen 29 AFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAAR 63 (108)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 56889999999888876 67788888888777654
No 33
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=21.39 E-value=7e+02 Score=23.55 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHHHhhhcCCCchHHHH
Q 027154 88 SGKSFLYFGLFLAVGIFFIFIAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQLAHMFSKERLPLTL 162 (227)
Q Consensus 88 ~~qRl~gF~~c~~~G~~f~~ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~qlk~M~s~~Rl~~Ti 162 (227)
.|=....|.-+++.|++.-++.. ++--.-..+.+-+++++++.+..+.+ -.+.|+.. .|..+++|+....
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~--~L~~~G~s~~qIG~l~a~~~~~~i~~-~~~~g~~a--Dr~~~~~~~l~~~ 74 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPL--YLESRGFSGTQIGILLAVGPLARIVS-PPFWGAIA--DRFGSAKRILALL 74 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH--hHhhhHHHHHHHH
Confidence 33345566667888887766553 33334457788899999999999887 45666643 3445556655433
No 34
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=20.99 E-value=6.7e+02 Score=24.16 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHH-------H
Q 027154 87 PSGKSFLYFGLFLAVGIFFIF------------IAFTMFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPK-------N 147 (227)
Q Consensus 87 s~~qRl~gF~~c~~~G~~f~~------------ls~~~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~-------~ 147 (227)
..+.|+.+-.+|++.|++-.. .++..|+|++. -+-||.-...++...+|-. +
T Consensus 280 ~~~~R~~wL~v~~~~~~~t~~ii~~f~~~l~~~~~l~~~iP~i~---------~~~Gn~G~qs~~~~~r~l~~g~i~~~~ 350 (449)
T TIGR00400 280 MAKNRIIWLLVLLVSSTFTATIISNYEDLLLSLVALANFIPLLM---------DTSGNAGSQSSAVVIRGLALETVKVKD 350 (449)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hccCcHHHHHHHHHHHHHhcCCCccch
Confidence 356788888888777766432 12223445444 3456776666666666543 2
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 027154 148 QLAHMFSKERLPLTLISIGSMVGTVYVSMVLHS 180 (227)
Q Consensus 148 qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~~s 180 (227)
-.|.+..+-+.-.....+..+++.+++.++.++
T Consensus 351 ~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~ 383 (449)
T TIGR00400 351 FFKVILREICVSILVGAILASVNFLRIVFFQGK 383 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 233333333444445555555555555554344
No 35
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=20.84 E-value=6.1e+02 Score=24.90 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHhhhhhcchhHHHHHhHhHHHHHhHhHHhhcHHHH
Q 027154 112 MFLPVIVLVPQKFAICFTIGCALTVGSFFALKGPKNQ 148 (227)
Q Consensus 112 ~flPli~l~P~KFAllfTlGsil~l~S~~FL~GP~~q 148 (227)
.++|++...+..+.++..++-+...+...+..|+.++
T Consensus 167 i~I~li~~g~~~i~v~ii~~viit~~tL~~v~g~n~K 203 (385)
T COG5438 167 ILIPLIINGFNPILVFIILCVIITAITLFMVNGINKK 203 (385)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcCccHH
Confidence 3467777666677666666666677777777777544
No 36
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.68 E-value=3.7e+02 Score=27.93 Aligned_cols=63 Identities=10% Similarity=0.193 Sum_probs=42.6
Q ss_pred HhhcHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHhhcC
Q 027154 141 ALKGPKNQLAHMFSKERLPLTLISIGSMVGTVYVSMVL--------HSYILSVLFSVLQVLALAYYAISCF 203 (227)
Q Consensus 141 FL~GP~~qlk~M~s~~Rl~~TivYl~Sli~TLy~al~~--------~s~iLtll~~ivQ~~AliwY~lSYi 203 (227)
.+.+-.+.+-+.++++|=..+.+|=..+++-++.++++ +...-+-+..++|++..+|+.+-||
T Consensus 73 r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~Efi 143 (654)
T KOG1419|consen 73 RYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFI 143 (654)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667777777776666655555555555543 5556777788889999999887775
No 37
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.57 E-value=3.8e+02 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhhhhcchhHHHHHhHhHHHHHhHhHH
Q 027154 96 GLFLAVGIFFIFIAFTMF--LPVIVLVPQKFAICFTIGCALTVGSFFA 141 (227)
Q Consensus 96 ~~c~~~G~~f~~ls~~~f--lPli~l~P~KFAllfTlGsil~l~S~~F 141 (227)
.+|+++|.+|++++.+-+ +|-+.-+-.-=+..-|+|..+++++...
T Consensus 10 ~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 10 SIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHH
Confidence 345667777777664211 4555555555566778887777766543
Done!