Query 027154
Match_columns 227
No_of_seqs 135 out of 377
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rij_A E6APN1 peptide; Trp-CAG 11.9 66 0.0023 18.7 0.6 16 2-17 3-19 (26)
2 4gc0_A D-xylose-proton symport 6.6 1.1E+03 0.038 19.8 7.1 12 124-135 408-419 (491)
3 4acr_A Glypican-1; proteoglyca 6.4 1.4E+02 0.0046 28.6 0.6 57 27-83 284-342 (478)
4 2w0c_P Protein P3, protein III 6.4 1.1E+02 0.0039 23.2 0.1 28 78-105 73-100 (104)
5 3zwl_E Eukaryotic translation 6.2 1.2E+02 0.0042 20.3 0.2 14 25-38 17-30 (50)
6 4f4s_A ATP synthase subunit 9, 6.2 6.2E+02 0.021 18.2 4.0 23 90-112 50-72 (76)
7 3bo0_B Preprotein translocase 5.6 6.1E+02 0.021 16.7 3.5 18 140-157 8-25 (65)
8 2kyh_A KVAP, voltage-gated pot 5.5 7.3E+02 0.025 19.1 4.4 12 145-156 10-21 (147)
9 3ro2_B Peptide of nuclear mito 5.1 2.1E+02 0.0072 17.0 0.7 15 25-39 12-26 (28)
10 2k19_A Putative piscicolin 126 5.0 1.8E+02 0.006 22.2 0.4 10 6-15 4-13 (98)
No 1
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=11.89 E-value=66 Score=18.75 Aligned_cols=16 Identities=50% Similarity=1.070 Sum_probs=11.5
Q ss_pred hhhhhhhhc-CCCCCCc
Q 027154 2 QKTAQSWFT-GGPSSGK 17 (227)
Q Consensus 2 ~~~~~~~~~-~~~~~~~ 17 (227)
|+.+-.|+. |++++..
T Consensus 3 qellgqwlkdggpssgr 19 (26)
T 1rij_A 3 QELLGQWLKDGGPSSGR 19 (26)
T ss_dssp HHHHHHHHHTTGGGSSS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 677778996 7766654
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.61 E-value=1.1e+03 Score=19.83 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.8
Q ss_pred HHHHHhHhHHHH
Q 027154 124 FAICFTIGCALT 135 (227)
Q Consensus 124 FAllfTlGsil~ 135 (227)
.++..+.+.+..
T Consensus 408 ~g~~~~~~~~~~ 419 (491)
T 4gc0_A 408 LAIAVAAQWLAN 419 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 3
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=6.41 E-value=1.4e+02 Score=28.58 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=25.4
Q ss_pred chhhcchhhhhhcC--CCCCCccccHHHHhcccccccccceeeeccccccCCCcccccC
Q 027154 27 SLLADWNSYAASQE--SSSDSSAFDLEAAVRTTSDKFTGTFNVVSKGVRDLPGNFQAST 83 (227)
Q Consensus 27 s~la~w~~ya~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~s~g~~~~~~~~qs~~ 83 (227)
.+=.+|+.|.++=. .+...+.+|+|.++++..-.++..+-.....-.++++..-..|
T Consensus 284 dLd~~W~~~Idsl~~la~~l~g~~~~e~v~~~i~~~IseAIm~~qen~~~ls~kV~q~C 342 (478)
T 4acr_A 284 DLDAEWRNLLDSMVLITDKFWGTSGVESVIGSVHTWLAEAINALQDNRDTLTAKVIQGC 342 (478)
T ss_dssp TTHHHHHHHHHHHHHGGGGGSSTTSHHHHHHCTTC------------------------
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 35579999998643 3334558999999999999998888877665556565554444
No 4
>2w0c_P Protein P3, protein III; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=6.36 E-value=1.1e+02 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=0.0
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHHHH
Q 027154 78 NFQASTSNVPSGKSFLYFGLFLAVGIFF 105 (227)
Q Consensus 78 ~~qs~~~sLs~~qRl~gF~~c~~~G~~f 105 (227)
-.|.+-+.+|-+.-+.||+.++++|.++
T Consensus 73 PaeTmVFGlPQkTv~~GF~~LLVvGL~l 100 (104)
T 2w0c_P 73 PSETLVFGVPQKTLLLGFGGLLVLGLVM 100 (104)
T ss_dssp ----------------------------
T ss_pred ccceeEecccchhHHHHhHHHHHHHhhh
Confidence 3456778999999999999999888753
No 5
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=6.24 E-value=1.2e+02 Score=20.28 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.5
Q ss_pred Ccchhhcchhhhhh
Q 027154 25 QSSLLADWNSYAAS 38 (227)
Q Consensus 25 ~~s~la~w~~ya~~ 38 (227)
.--+|.+|++|-+.
T Consensus 17 RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 17 QRELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45689999999875
No 6
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=6.16 E-value=6.2e+02 Score=18.18 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027154 90 KSFLYFGLFLAVGIFFIFIAFTM 112 (227)
Q Consensus 90 qRl~gF~~c~~~G~~f~~ls~~~ 112 (227)
.-++||++.=+.|+++..+++.+
T Consensus 50 ~~ilG~Al~Ea~glf~LvvA~ll 72 (76)
T 4f4s_A 50 MAILGFALSEATGLFCLMVSFLL 72 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999743
No 7
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=5.55 E-value=6.1e+02 Score=16.71 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=15.6
Q ss_pred HHhhcHHHHHhhhcCCCc
Q 027154 140 FALKGPKNQLAHMFSKER 157 (227)
Q Consensus 140 ~FL~GP~~qlk~M~s~~R 157 (227)
-|+++..+.+|+..-|.|
T Consensus 8 ~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 8 AFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHhheeccCC
Confidence 578888999999998888
No 8
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=5.47 E-value=7.3e+02 Score=19.10 Aligned_cols=12 Identities=0% Similarity=0.158 Sum_probs=5.6
Q ss_pred HHHHHhhhcCCC
Q 027154 145 PKNQLAHMFSKE 156 (227)
Q Consensus 145 P~~qlk~M~s~~ 156 (227)
.+++++++.+.+
T Consensus 10 ~~~~~~~~~e~~ 21 (147)
T 2kyh_A 10 RVRNIGDVMEHP 21 (147)
T ss_dssp HHHHHHHHHTCH
T ss_pred HHHHHHHHHhCc
Confidence 344445555443
No 9
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=5.15 E-value=2.1e+02 Score=16.99 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=10.4
Q ss_pred Ccchhhcchhhhhhc
Q 027154 25 QSSLLADWNSYAASQ 39 (227)
Q Consensus 25 ~~s~la~w~~ya~~~ 39 (227)
.|.-|+|||.-|.-+
T Consensus 12 epeqlddw~riaelq 26 (28)
T 3ro2_B 12 EPEQLDDWNRIAELQ 26 (28)
T ss_dssp CCCCCCCTTTGGGC-
T ss_pred CcccchhHHHHHHHh
Confidence 355689999887643
No 10
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=4.98 E-value=1.8e+02 Score=22.17 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=7.3
Q ss_pred hhhhcCCCCC
Q 027154 6 QSWFTGGPSS 15 (227)
Q Consensus 6 ~~~~~~~~~~ 15 (227)
-+||+||.+-
T Consensus 4 lKWfsGG~ER 13 (98)
T 2k19_A 4 LKWFSGGKER 13 (98)
T ss_dssp CCCCSCCSCH
T ss_pred ceeccCCHHH
Confidence 3799998543
Done!