Query 027154
Match_columns 227
No_of_seqs 135 out of 377
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027154.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027154hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dk8a1 a.4.5.85 (A:8-75) DNA- 8.0 60 0.0044 21.5 1.0 33 66-100 17-49 (68)
2 d1nekc_ f.21.2.2 (C:) Succinat 5.8 4.2E+02 0.031 18.0 9.8 18 88-105 28-45 (129)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 5.2 3.7E+02 0.027 16.6 5.1 21 185-205 22-47 (53)
4 d1e6yb1 a.89.1.1 (B:2186-2433) 4.9 74 0.0054 25.6 0.1 12 29-40 112-123 (248)
5 d1hbnb1 a.89.1.1 (B:189-443) B 4.8 75 0.0055 25.7 0.1 12 29-40 111-122 (255)
6 d1q90a3 f.23.23.1 (A:248-292) 3.1 4.1E+02 0.03 15.9 2.5 21 154-174 1-21 (45)
7 d1y0pa3 d.168.1.1 (A:362-504) 3.1 1.7E+02 0.012 20.4 0.8 13 29-41 104-116 (143)
8 d1ppjc2 f.21.1.2 (C:15-260) Mi 3.0 8.5E+02 0.062 18.5 5.2 35 181-215 20-54 (246)
9 d1v54j_ f.23.4.1 (J:) Mitochon 3.0 4.6E+02 0.033 16.4 2.8 20 157-176 29-48 (58)
10 d1jmsa3 a.60.12.1 (A:243-302) 2.9 1.1E+02 0.0078 19.4 -0.6 24 69-92 26-49 (60)
No 1
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.97 E-value=60 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=24.1
Q ss_pred eeeccccccCCCcccccCCCCChhHHHHHHHHHHH
Q 027154 66 NVVSKGVRDLPGNFQASTSNVPSGKSFLYFGLFLA 100 (227)
Q Consensus 66 ~~~s~g~~~~~~~~qs~~~sLs~~qRl~gF~~c~~ 100 (227)
+..-+|+.+ ...|.++++++-.||...-=-++.
T Consensus 17 k~~P~GitD--~dl~~a~p~v~~~qRv~aiN~LLs 49 (68)
T d2dk8a1 17 HQFPHGITD--QVIQNEMPHIEAQQRAVAINRLLS 49 (68)
T ss_dssp HHCSSCEEH--HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCCCh--HHHHHHCcCCCHHHHHHHHHHHHH
Confidence 344678877 566999999999999876544433
No 2
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=5.80 E-value=4.2e+02 Score=17.98 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 027154 88 SGKSFLYFGLFLAVGIFF 105 (227)
Q Consensus 88 ~~qRl~gF~~c~~~G~~f 105 (227)
=..|+-|.++.+++..+.
T Consensus 28 I~HRisGv~l~~~~~~~~ 45 (129)
T d1nekc_ 28 ILHRVSGVITFVAVGILL 45 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368999987765554443
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.25 E-value=3.7e+02 Score=16.64 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHH-----hhcCCC
Q 027154 185 VLFSVLQVLALAYYA-----ISCFPG 205 (227)
Q Consensus 185 ll~~ivQ~~AliwY~-----lSYiPg 205 (227)
..+..+--++++||+ +.|+|+
T Consensus 22 ~~~G~a~gl~lvy~TDWklil~yvPy 47 (53)
T d2fyuk1 22 SLWGAVGAVGLVWATDWRLILDWVPY 47 (53)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHTSSSS
T ss_pred hhhhhhhheeeeeeehHHHHHhhhhh
Confidence 344555667788884 888887
No 4
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=4.86 E-value=74 Score=25.59 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=9.6
Q ss_pred hhcchhhhhhcC
Q 027154 29 LADWNSYAASQE 40 (227)
Q Consensus 29 la~w~~ya~~~~ 40 (227)
.+.||+||+++-
T Consensus 112 ~~lWNAYaaAG~ 123 (248)
T d1e6yb1 112 VPKWNACAAVGT 123 (248)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467999999864
No 5
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.83 E-value=75 Score=25.71 Aligned_cols=12 Identities=58% Similarity=0.899 Sum_probs=9.6
Q ss_pred hhcchhhhhhcC
Q 027154 29 LADWNSYAASQE 40 (227)
Q Consensus 29 la~w~~ya~~~~ 40 (227)
.+.||+||+++-
T Consensus 111 ~~lWNAYaaAG~ 122 (255)
T d1hbnb1 111 LAMWNAYAAAGL 122 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467999999864
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.14 E-value=4.1e+02 Score=15.89 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=13.6
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 027154 154 SKERLPLTLISIGSMVGTVYV 174 (227)
Q Consensus 154 s~~Rl~~TivYl~Sli~TLy~ 174 (227)
+|.|+..-++|+.+++++=+.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~ 21 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVL 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777666544
No 7
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=3.12 E-value=1.7e+02 Score=20.39 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=11.0
Q ss_pred hhcchhhhhhcCC
Q 027154 29 LADWNSYAASQES 41 (227)
Q Consensus 29 la~w~~ya~~~~~ 41 (227)
+++||.|+..+.+
T Consensus 104 v~~yN~~~~~G~D 116 (143)
T d1y0pa3 104 VARYNSLVSSGKD 116 (143)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCC
Confidence 6899999998755
No 8
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.99 E-value=8.5e+02 Score=18.47 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 027154 181 YILSVLFSVLQVLALAYYAISCFPGGSFGLKFLSS 215 (227)
Q Consensus 181 ~iLtll~~ivQ~~AliwY~lSYiPgGr~~lk~~~~ 215 (227)
--+..++.++|+++=+.-+.-|.|...++-..+..
T Consensus 20 G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~ 54 (246)
T d1ppjc2 20 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTH 54 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34667788999999999999999987777665544
No 9
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.96 E-value=4.6e+02 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 027154 157 RLPLTLISIGSMVGTVYVSM 176 (227)
Q Consensus 157 Rl~~TivYl~Sli~TLy~al 176 (227)
++++-+....+++.|.|+..
T Consensus 29 ~~LYr~Tm~L~~~G~~~s~~ 48 (58)
T d1v54j_ 29 NILYRVTMTLCLGGTLYSLY 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555443
No 10
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.90 E-value=1.1e+02 Score=19.38 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=12.4
Q ss_pred ccccccCCCcccccCCCCChhHHH
Q 027154 69 SKGVRDLPGNFQASTSNVPSGKSF 92 (227)
Q Consensus 69 s~g~~~~~~~~qs~~~sLs~~qRl 92 (227)
.+|++.+..--......|+..||+
T Consensus 26 ~~Gi~ti~dL~~~~~~~Lt~~Q~i 49 (60)
T d1jmsa3 26 RMGFRTLSKIQSDKSLRFTQMQKA 49 (60)
T ss_dssp HTTCCSHHHHHHCSSCCCCHHHHH
T ss_pred HhCCCCHHHHHhcCcccCCHHHHH
Confidence 344444332222334468888886
Done!