BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027155
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7GWZ7|NUSB_CAMC5 N utilization substance protein B homolog OS=Campylobacter curvus
(strain 525.92) GN=nusB PE=3 SV=1
Length = 131
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
+D+++ P K++ RI +EL+IL L + E+ GT ++INEA++LAK +AP+
Sbjct: 59 LDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEAIELAKELGGDSAPK 118
Query: 196 IINGCL 201
ING L
Sbjct: 119 FINGVL 124
>sp|Q5N1J7|NUSB_SYNP6 N utilization substance protein B homolog OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=nusB
PE=3 SV=1
Length = 213
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
ID+ + + D R+ L+ IL LA +EI +GT Q+ INEAV+LA R+ D R
Sbjct: 130 IDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRR 189
Query: 196 IINGCLRTF 204
ING LR
Sbjct: 190 FINGVLRRL 198
>sp|Q8GIR7|NUSB_SYNE7 N utilization substance protein B homolog OS=Synechococcus
elongatus (strain PCC 7942) GN=nusB PE=3 SV=1
Length = 213
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
ID+ + + D R+ L+ IL LA +EI +GT Q+ INEAV+LA R+ D R
Sbjct: 130 IDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRR 189
Query: 196 IINGCLRTF 204
ING LR
Sbjct: 190 FINGVLRRL 198
>sp|B1WXY6|NUSB_CYAA5 N utilization substance protein B homolog OS=Cyanothece sp. (strain
ATCC 51142) GN=nusB PE=3 SV=1
Length = 209
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
ID+ + + KD R+ ++ IL LA++EI + ++ INEAV+LAKR+ D R
Sbjct: 134 IDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGYR 193
Query: 196 IINGCLRTFV 205
ING LR F
Sbjct: 194 FINGVLRRFT 203
>sp|B8HYJ8|NUSB_CYAP4 N utilization substance protein B homolog OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=nusB PE=3 SV=1
Length = 209
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILEL--SILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ID ++ D R+ ++ +IL +A++EI + T Q+ INEAV+LAKR+ D
Sbjct: 126 HRTAIDHLLETALVDWQFNRLAQIDRNILRIAVAEILYLKTPTQVTINEAVELAKRYSDE 185
Query: 192 AAPRIINGCLRTFVRNLEGTAN 213
R +NG LR + +LE A
Sbjct: 186 DGYRFVNGVLRRTIPHLEAQAQ 207
>sp|Q18B61|NUSB_CLOD6 N utilization substance protein B homolog OS=Clostridium difficile
(strain 630) GN=nusB PE=3 SV=1
Length = 169
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
ID+++ K+ R+ +++SIL L++ EI + T +++ INEAV+LAK +CD +P+
Sbjct: 95 IDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPK 154
Query: 196 IINGCLRTFV 205
ING L + V
Sbjct: 155 FINGILGSVV 164
>sp|B2J3F1|NUSB_NOSP7 N utilization substance protein B homolog OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=nusB PE=3 SV=1
Length = 213
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 119 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQI 176
+ ++L++ V + + HIID+++ D R+ +L IL +A++E+ +G I
Sbjct: 123 YAKELVITV----NENRHIIDELLSTALVDWQVTRLAQLDRDILQIAVAEMKFLGVPDSI 178
Query: 177 VINEAVDLAKRFCDGAAPRIINGCLR 202
INEAV+LAKR+ R ING LR
Sbjct: 179 AINEAVELAKRYSGDDGHRFINGVLR 204
>sp|Q8RAD1|NUSB_THETN N utilization substance protein B homolog OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=nusB PE=3 SV=1
Length = 140
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 134 HVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H+ ID+ + KD P R+ ++L+IL +M E+ I INEAV++AK++
Sbjct: 54 HLEEIDREIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKKYSTD 113
Query: 192 AAPRIINGCLRTFVRNL---EGTAN 213
+P ING L FVR EG AN
Sbjct: 114 DSPSFINGLLGAFVREKGLEEGEAN 138
>sp|B7K4P4|NUSB_CYAP8 N utilization substance protein B homolog OS=Cyanothece sp. (strain
PCC 8801) GN=nusB PE=3 SV=1
Length = 211
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 138 IDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPR 195
ID+ + + D R+ ++ IL +A++EI + +++ INEA+++AKR+ D R
Sbjct: 134 IDQQLEAVLVDWQLNRLPKIDRDILRIAVAEILFLEIPNKVAINEAIEMAKRYSDDEGYR 193
Query: 196 IINGCLRTFVRNLEGTAN 213
ING LR F L T N
Sbjct: 194 FINGVLRRFTERLRITNN 211
>sp|Q7MAE9|NUSB_WOLSU N utilization substance protein B homolog OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=nusB PE=3 SV=1
Length = 135
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 133 AHVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 190
AH+ ID+ + K+ RI +E +IL L EI G ++INEAV+L+K F +
Sbjct: 55 AHLGEIDEEIKKHLKEWDFSRIGDMERAILRLGTFEIVYSGVDRAVIINEAVELSKTFGN 114
Query: 191 GAAPRIINGCL 201
+PR +NG L
Sbjct: 115 DNSPRFVNGVL 125
>sp|B5YE05|NUSB_DICT6 N utilization substance protein B homolog OS=Dictyoglomus
thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
GN=nusB PE=3 SV=1
Length = 144
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 146 WKDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 204
WK + G LE +IL LA++E+ T + +NEAV+LAK++ A R +NG LR
Sbjct: 65 WKLERMG-ALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPEAGRFVNGILRNI 123
Query: 205 VRNLE 209
VRN E
Sbjct: 124 VRNWE 128
>sp|A7ZBS7|NUSB_CAMC1 N utilization substance protein B homolog OS=Campylobacter concisus
(strain 13826) GN=nusB PE=3 SV=1
Length = 131
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 133 AHVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 190
A+ +D+++ P KD ++ EL+IL L + E+ T ++INEA++LAK
Sbjct: 54 ANKEKLDEILKPHLKDGDFSKVGATELAILRLGLYEMKFSQTDKAVIINEAIELAKELGS 113
Query: 191 GAAPRIINGCL 201
AP+ ING L
Sbjct: 114 DQAPKFINGVL 124
>sp|B1XIZ3|NUSB_SYNP2 N utilization substance protein B homolog OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=nusB PE=3 SV=1
Length = 213
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 155 LELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 202
L+ IL +A++EI + T +++ INEAV+LAKR+ D R ING LR
Sbjct: 153 LDRDILRIAVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLR 200
>sp|A6QBK6|NUSB_SULNB N utilization substance protein B homolog OS=Sulfurovum sp. (strain
NBC37-1) GN=nusB PE=3 SV=1
Length = 130
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 146 WKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL 201
W GR+ E +IL L EI V T I+INEAV+LAK D +P+ ING L
Sbjct: 71 WDYDAIGRV-EKAILRLGAYEILVAKTDRAIIINEAVELAKSLADEKSPQFINGVL 125
>sp|Q118A6|NUSB_TRIEI N utilization substance protein B homolog OS=Trichodesmium
erythraeum (strain IMS101) GN=nusB PE=3 SV=1
Length = 207
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 116 LLRFTRKLLV-----AVVDKWDAHVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEIT 168
+L+ T +L V V+ K + + +DK++ D R+ ++L IL +A++E+
Sbjct: 105 MLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAVAEMM 164
Query: 169 VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 202
+G + Q+ I+EAV+LAKR+ + ING LR
Sbjct: 165 FIGIQKQVAISEAVELAKRYSGEDGYKFINGVLR 198
>sp|B8E246|NUSB_DICTD N utilization substance protein B homolog OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=nusB PE=3 SV=1
Length = 144
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 146 WKDQPAGRILELSILHLAMSEI-TVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 204
WK + G I E +IL +A++E+ T + +NEAV+LAK++ A R ING LR
Sbjct: 65 WKLERIGTI-EKNILRMAIAEMFTFSDIPQGVTVNEAVELAKKYVSPEAGRFINGILRNI 123
Query: 205 VRNLE 209
VRN +
Sbjct: 124 VRNWD 128
>sp|Q0ABQ3|NUSB_ALHEH N utilization substance protein B homolog OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=nusB PE=3 SV=1
Length = 178
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 90 LRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQ 149
L D EE +EA P+ + L + R LL V A ++ +D+ + P+ D+
Sbjct: 46 LEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVP----ARLNDLDQALEPL-LDR 100
Query: 150 PAGRI--LELSILHLAMSEIT-VVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVR 206
P + LE ++L L E++ + T +++INEAV+LAKRF + R ING L R
Sbjct: 101 PLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQSHRYINGVLDKLAR 160
Query: 207 NLEGTAN-IEASKASK 221
L A IEA + +
Sbjct: 161 GLPLRATEIEADRKRR 176
>sp|A8Z464|NUSB_STAAT N utilization substance protein B homolog OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 133 AHVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 190
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 54 GHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSD 113
Query: 191 GAAPRIINGCL 201
+ ING L
Sbjct: 114 DDHYKFINGVL 124
>sp|Q2FGK9|NUSB_STAA3 N utilization substance protein B homolog OS=Staphylococcus aureus
(strain USA300) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 133 AHVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 190
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 54 GHEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSD 113
Query: 191 GAAPRIINGCL 201
+ ING L
Sbjct: 114 DDHYKFINGVL 124
>sp|P65579|NUSB_STAAW N utilization substance protein B homolog OS=Staphylococcus aureus
(strain MW2) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|Q6G941|NUSB_STAAS N utilization substance protein B homolog OS=Staphylococcus aureus
(strain MSSA476) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|P65578|NUSB_STAAN N utilization substance protein B homolog OS=Staphylococcus aureus
(strain N315) GN=nusB PE=1 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|P65577|NUSB_STAAM N utilization substance protein B homolog OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=nusB PE=1 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|A6QH69|NUSB_STAAE N utilization substance protein B homolog OS=Staphylococcus aureus
(strain Newman) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|Q5HFP7|NUSB_STAAC N utilization substance protein B homolog OS=Staphylococcus aureus
(strain COL) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|A5IT53|NUSB_STAA9 N utilization substance protein B homolog OS=Staphylococcus aureus
(strain JH9) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|Q2FY45|NUSB_STAA8 N utilization substance protein B homolog OS=Staphylococcus aureus
(strain NCTC 8325) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|A6U1Z6|NUSB_STAA2 N utilization substance protein B homolog OS=Staphylococcus aureus
(strain JH1) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|A7X2Q3|NUSB_STAA1 N utilization substance protein B homolog OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=nusB PE=3 SV=1
Length = 129
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|Q87RU3|NUSB_VIBPA N utilization substance protein B homolog OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=nusB PE=3 SV=1
Length = 155
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 78 VTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHI 137
+T E V +E S ++ E E+ ++ P L + + + R+LL VV +H +
Sbjct: 26 ITKENVATIEEQFLSGDKYD--EEELRASEPALAAPETDVAYFRELLSGVVL---SHAEL 80
Query: 138 IDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRI 196
K+ P + + ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 81 DSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKF 140
Query: 197 INGCL 201
+NG L
Sbjct: 141 VNGVL 145
>sp|Q2YYB7|NUSB_STAAB N utilization substance protein B homolog OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=nusB PE=3 SV=1
Length = 129
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|Q8CP37|NUSB_STAES N utilization substance protein B homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=nusB PE=3 SV=1
Length = 129
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 79 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 138
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 139 DKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRI 196
D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D +
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYKF 119
Query: 197 INGCL 201
+NG L
Sbjct: 120 VNGVL 124
>sp|Q5HP28|NUSB_STAEQ N utilization substance protein B homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=nusB PE=3
SV=1
Length = 129
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 79 TTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHII 138
T T++EA E ++ D +S L F L+ V D H ++
Sbjct: 22 TDLTIQEAIEFIKDD------------------HSDLDFDFIYWLVTGVKD----HQIVL 59
Query: 139 DKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRI 196
D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D +
Sbjct: 60 DETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYKF 119
Query: 197 INGCL 201
+NG L
Sbjct: 120 VNGVL 124
>sp|Q9CHN4|NUSB_LACLA N utilization substance protein B homolog OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=nusB PE=3 SV=2
Length = 192
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 119 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVI 178
+ +L+ V+DK + I K + W ++E +IL ++ EI T + +
Sbjct: 106 YFTQLVDGVLDKKEDLEANISKYLTKTWSFSRLT-LVEQAILQVSSYEILYTETPDVVAV 164
Query: 179 NEAVDLAKRFCDGAAPRIINGCLRTFVR 206
NEAV+L+K F D + R ING L F++
Sbjct: 165 NEAVELSKDFSDEKSSRFINGVLTNFLK 192
>sp|Q49XW9|NUSB_STAS1 N utilization substance protein B homolog OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=nusB PE=3 SV=1
Length = 128
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 115 LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGT 172
L F L+ V D H ++D+ + P KD R+L+ IL ++ E+ T
Sbjct: 40 LEFEFISWLVTGVKD----HEVVLDEKIQPHLKDWTLARLLKSDRIILRMSTFEMLHSST 95
Query: 173 RHQIVINEAVDLAKRFCDGAAPRIINGCL 201
+++INEAV+LAK+F D + ING L
Sbjct: 96 PQKVIINEAVELAKQFSDDDHYKFINGVL 124
>sp|Q6GGH4|NUSB_STAAR N utilization substance protein B homolog OS=Staphylococcus aureus
(strain MRSA252) GN=nusB PE=3 SV=1
Length = 129
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 134 HVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDG 191
H ++D+ + P KD R+L+ IL +A EI T ++V+NEAV+L K+F D
Sbjct: 55 HEPVLDETISPNLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDD 114
Query: 192 AAPRIINGCL 201
+ ING L
Sbjct: 115 DHYKFINGVL 124
>sp|C1CPU1|NUSB_STRZT N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|C1CIT2|NUSB_STRZP N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain P1031) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|P65583|NUSB_STRR6 N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|P65582|NUSB_STRPN N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B8ZLJ7|NUSB_STRPJ N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=nusB
PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B1I9M4|NUSB_STRPI N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|B5E1P3|NUSB_STRP4 N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|Q04M45|NUSB_STRP2 N utilization substance protein B homolog OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=nusB
PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|C1CCJ6|NUSB_STRZJ N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain JJA) GN=nusB PE=3 SV=1
Length = 140
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|Q4L6M5|NUSB_STAHJ N utilization substance protein B homolog OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=nusB PE=3 SV=1
Length = 128
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 119 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELS--ILHLAMSEITVVGTRHQI 176
F L+ V D H ++D + P KD R+L+ IL +A E+ T ++
Sbjct: 44 FIHWLVTGVKD----HEPVLDDTIKPHLKDWSLQRLLKTDRIILRMATFELLHSDTPPKV 99
Query: 177 VINEAVDLAKRFCDGAAPRIINGCL 201
+INEAV+LAK+F D + ING L
Sbjct: 100 IINEAVELAKQFSDDEHYKFINGVL 124
>sp|C1C5G8|NUSB_STRP7 N utilization substance protein B homolog OS=Streptococcus
pneumoniae (strain 70585) GN=nusB PE=3 SV=1
Length = 140
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 154 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 205
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>sp|A7MWU1|NUSB_VIBHB N utilization substance protein B homolog OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=nusB PE=3 SV=1
Length = 155
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 82 TVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKV 141
T+EE + L D+ + E E+ ++ P L + + + R+LL VV +H + K+
Sbjct: 33 TIEE--QFLSGDKYD---EEELHASEPALAAPETDVAYFRELLSGVVL---SHSELDSKI 84
Query: 142 VPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGC 200
P + + ++EL++L LAM E+T +++VINEA++LAK F + + +NG
Sbjct: 85 RPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGV 144
Query: 201 L 201
L
Sbjct: 145 L 145
>sp|Q2JHC7|NUSB_SYNJB N utilization substance protein B homolog OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=nusB PE=3 SV=1
Length = 291
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 146 WKDQPAGRILELSILHLAMSEITVVGTRH-QIVINEAVDLAKRFCDGAAPRIINGCLRTF 204
W+ Q GRI E IL LA+ E+ ++ + ++ INEAV+LAK++ D A +NG LR
Sbjct: 211 WQLQRVGRI-ERDILRLAVVEMEILASSPVKVAINEAVELAKKYGDPEAAAFVNGVLRRV 269
Query: 205 V 205
V
Sbjct: 270 V 270
>sp|P74395|NUSB_SYNY3 N utilization substance protein B homolog OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=nusB PE=3 SV=2
Length = 221
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 159 ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 202
IL LA++E+ +G ++ INEAV+LAKR+ R ING LR
Sbjct: 160 ILRLAIAELDYLGVPQKVAINEAVELAKRYSGQDGHRFINGVLR 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,225,849
Number of Sequences: 539616
Number of extensions: 3062347
Number of successful extensions: 9322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 9120
Number of HSP's gapped (non-prelim): 368
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)