Query 027155
Match_columns 227
No_of_seqs 181 out of 1587
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r2d_A Protein NUSB, N utiliza 100.0 4.6E-36 1.6E-40 245.9 12.8 140 19-216 3-143 (149)
2 1tzv_A NUSB protein, N utiliza 100.0 9.6E-36 3.3E-40 241.3 13.6 135 19-213 3-139 (142)
3 3d3b_A Protein NUSB, N utiliza 100.0 3.5E-35 1.2E-39 237.7 13.5 132 19-210 6-138 (141)
4 1eyv_A NUSB protein, N-utilizi 100.0 4E-34 1.4E-38 236.0 12.0 135 18-208 7-142 (156)
5 1sqg_A SUN protein, FMU protei 99.9 3.2E-24 1.1E-28 199.0 14.1 124 23-208 6-129 (429)
6 2yxl_A PH0851 protein, 450AA l 99.9 1.3E-24 4.4E-29 203.2 10.4 132 15-207 4-140 (450)
7 1q8c_A Hypothetical protein Mg 72.3 17 0.00059 28.4 7.7 55 149-204 96-150 (151)
8 2zc2_A DNAD-like replication p 34.8 24 0.00082 24.3 2.5 32 175-207 37-68 (78)
9 2i5u_A DNAD domain protein; st 23.4 60 0.002 22.8 3.0 32 175-207 42-73 (83)
10 1v54_E Cytochrome C oxidase po 20.0 57 0.002 25.0 2.3 49 156-204 25-75 (109)
No 1
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=100.00 E-value=4.6e-36 Score=245.90 Aligned_cols=140 Identities=25% Similarity=0.402 Sum_probs=117.5
Q ss_pred CccHHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHHH
Q 027155 19 CSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESA 98 (227)
Q Consensus 19 ~~R~~aRe~Avq~Lyq~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 98 (227)
.+|+++|+.|+|+||+++.+|.++.++++.++....
T Consensus 3 ~~R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~~~-------------------------------------------- 38 (149)
T 3r2d_A 3 RYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKN-------------------------------------------- 38 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT--------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc--------------------------------------------
Confidence 468999999999999999999999999887654100
Q ss_pred HHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhc-CCchhhH
Q 027155 99 IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIV 177 (227)
Q Consensus 99 ~~~~~~~~~~~~~~~~~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~-~iP~~va 177 (227)
..+..|++|+++||+||++|+..||++|++++ ++|+++|++++ +++|||+|+|||+|+ ++|++|+
T Consensus 39 ------------~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~~~rl~~~-~r~iLrla~yEl~~~~~iP~~va 104 (149)
T 3r2d_A 39 ------------IKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYV-ERNALRLGVAELIFLKSKEPGRV 104 (149)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC----CGGGSCHH-HHHHHHHHHHHHTTSCCSCHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCCccccCHH-HHHHHHHHHHHHHHcCCCCCeeh
Confidence 01346899999999999999999999999999 68999999997 799999999999997 8999999
Q ss_pred HHHHHHHHHhhCCCCCCChhHHHHhHHHhhhhccccccc
Q 027155 178 INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEA 216 (227)
Q Consensus 178 InEaVeLAK~~g~~~s~~FVNaVLr~i~r~~~~~e~~~~ 216 (227)
|||||++||.|+++++++|||||||++.|+.+..+.++.
T Consensus 105 InEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~ 143 (149)
T 3r2d_A 105 FIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEK 143 (149)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhCCCCccccchHHhhHHHHhhcccccccC
Confidence 999999999999999999999999999999988887764
No 2
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=100.00 E-value=9.6e-36 Score=241.28 Aligned_cols=135 Identities=17% Similarity=0.307 Sum_probs=120.3
Q ss_pred CccHHHHHHHHHHHHHHHhcCC-ChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHH
Q 027155 19 CSPRAARELALLVVYAACLEGS-DPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 97 (227)
Q Consensus 19 ~~R~~aRe~Avq~Lyq~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 97 (227)
.+|+.+|+.|+|+||+++.+|. ++.++++.+++ ..
T Consensus 3 ~~r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~-~~------------------------------------------- 38 (142)
T 1tzv_A 3 TPRRRMRLAVFKALFQHEFRRDEDLEQILEEILD-ET------------------------------------------- 38 (142)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC-TT-------------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-hc-------------------------------------------
Confidence 4688999999999999999998 88888765432 00
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhc-CCchhh
Q 027155 98 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQI 176 (227)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~-~iP~~v 176 (227)
.++.|++|+++||+||++|+..||++|++++ ++|+++|++++ +++|||+|+|||+|+ ++|++|
T Consensus 39 --------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~~w~l~rl~~~-~r~iLrla~yEl~~~~~iP~~v 102 (142)
T 1tzv_A 39 --------------YDKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVV-DRNVLRLATYELLFEKDIPIEV 102 (142)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC-SSSCGGGSCHH-HHHHHHHHHHHHHHCTTSCHHH
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCChHHCCHH-HHHHHHHHHHHHHhcCCCCchh
Confidence 1346899999999999999999999999999 57999999997 799999999999997 799999
Q ss_pred HHHHHHHHHHhhCCCCCCChhHHHHhHHHhhhhcccc
Q 027155 177 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTAN 213 (227)
Q Consensus 177 aInEaVeLAK~~g~~~s~~FVNaVLr~i~r~~~~~e~ 213 (227)
+|||||++||.||++++++|||||||++.|+.+..+.
T Consensus 103 aInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~~~~ 139 (142)
T 1tzv_A 103 TIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139 (142)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999998876653
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=100.00 E-value=3.5e-35 Score=237.69 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=117.6
Q ss_pred CccHHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHHH
Q 027155 19 CSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESA 98 (227)
Q Consensus 19 ~~R~~aRe~Avq~Lyq~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 98 (227)
.+|+.+|+.|+|+||+++.+|.+..+++..++.. ..
T Consensus 6 ~~R~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~~------------------~~-------------------------- 41 (141)
T 3d3b_A 6 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE------------------QD-------------------------- 41 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------SC--------------------------
T ss_pred chHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHh------------------cc--------------------------
Confidence 3689999999999999999998888887655431 00
Q ss_pred HHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhc-CCchhhH
Q 027155 99 IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQIV 177 (227)
Q Consensus 99 ~~~~~~~~~~~~~~~~~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~-~iP~~va 177 (227)
.+..|++|+++||+||++|+..||++|++++ + |+++|++++ +++|||+|+|||+|+ ++|++|+
T Consensus 42 -------------l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~-~~l~rl~~~-~r~iLrla~yEll~~~~iP~~va 105 (141)
T 3d3b_A 42 -------------VKDVDVLYFRELLAGVATNTAYLDGLMKPYL-S-RLLEELGQV-EKAVLRIALYELSKRSDVPYKVA 105 (141)
T ss_dssp -------------CTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG-T-TCSSCCCHH-HHHHHHHHHHHHHHCTTSCHHHH
T ss_pred -------------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-C-CCHHHcCHH-HHHHHHHHHHHHHhCCCCCchhh
Confidence 1234789999999999999999999999999 4 999999997 799999999999997 7999999
Q ss_pred HHHHHHHHHhhCCCCCCChhHHHHhHHHhhhhc
Q 027155 178 INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 210 (227)
Q Consensus 178 InEaVeLAK~~g~~~s~~FVNaVLr~i~r~~~~ 210 (227)
|||||++||.||++++++|||||||+++|++++
T Consensus 106 InEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~ 138 (141)
T 3d3b_A 106 INEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 138 (141)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998765
No 4
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=100.00 E-value=4e-34 Score=235.95 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=112.8
Q ss_pred CCccHHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHH
Q 027155 18 FCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEES 97 (227)
Q Consensus 18 ~~~R~~aRe~Avq~Lyq~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 97 (227)
..+|+++|+.|+|+||+++.+|.+..+++...... ..
T Consensus 7 ~~~R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l-------------~~------------------------------ 43 (156)
T 1eyv_A 7 VRGRHQARKRAVALLFEAEVRGISAAEVVDTRAAL-------------AE------------------------------ 43 (156)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH-------------HH------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc-------------cc------------------------------
Confidence 35799999999999999999998888876543210 00
Q ss_pred HHHHhhhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhc-CCchhh
Q 027155 98 AIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVV-GTRHQI 176 (227)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~-~iP~~v 176 (227)
.+ . ....|++|+++||+||++|+..||++|++++ ++|+++|++++ +++|||+|+|||+|+ ++|++|
T Consensus 44 ---~d---~-----~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~l~rl~~~-~r~iLrla~yel~~~~~iP~~v 110 (156)
T 1eyv_A 44 ---AK---P-----DIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAV-DRAILRVSVWELLHAADVPEPV 110 (156)
T ss_dssp ---HC---T-----TSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTCCGGGSCHH-HHHHHHHHHHHHHHCTTSCHHH
T ss_pred ---cc---c-----ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCChhhCCHH-HHHHHHHHHHHHHHcCCCCchh
Confidence 00 0 0123589999999999999999999999999 68999999997 799999999999997 799999
Q ss_pred HHHHHHHHHHhhCCCCCCChhHHHHhHHHhhh
Q 027155 177 VINEAVDLAKRFCDGAAPRIINGCLRTFVRNL 208 (227)
Q Consensus 177 aInEaVeLAK~~g~~~s~~FVNaVLr~i~r~~ 208 (227)
+|||||++||.||++++++|||||||++.|..
T Consensus 111 ~InEaVelak~~~~~~~~~fVNgVLr~i~r~~ 142 (156)
T 1eyv_A 111 VVDEAVQLAKELSTDDSPGFVNGVLGQVMLVT 142 (156)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHhH
Confidence 99999999999999999999999999998764
No 5
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.91 E-value=3.2e-24 Score=199.03 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhhHHHHHHHh
Q 027155 23 AARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAE 102 (227)
Q Consensus 23 ~aRe~Avq~Lyq~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 102 (227)
.+|+.|+|+||+++.+|.++.+++......
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~~~~-------------------------------------------------- 35 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQK-------------------------------------------------- 35 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHTT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhh--------------------------------------------------
Confidence 489999999999999998888887643210
Q ss_pred hhcCCCcccccHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 027155 103 VLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAV 182 (227)
Q Consensus 103 ~~~~~~~~~~~~~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~~iP~~vaInEaV 182 (227)
.+..|++|+++||+||++|+..||++|+++++ + +++|++++ +++|||+|+|||+|+++|++++|||+|
T Consensus 36 ---------~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~iLrl~~yel~~~~~p~~~~ineaV 103 (429)
T 1sqg_A 36 ---------VSDKDKALLQELCFGVLRTLSQLDWLINKLMA-R-PMTGKQRT-VHYLIMVGLYQLLYTRIPPHAALAETV 103 (429)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-CCCGGGHH-HHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC-C-ChhhcCHH-HHHHHHHHHHHHhhCCCCchHhhHHHH
Confidence 13468999999999999999999999999994 3 88999997 799999999999999999999999999
Q ss_pred HHHHhhCCCCCCChhHHHHhHHHhhh
Q 027155 183 DLAKRFCDGAAPRIINGCLRTFVRNL 208 (227)
Q Consensus 183 eLAK~~g~~~s~~FVNaVLr~i~r~~ 208 (227)
++||+|+++++++|||||||++.+..
T Consensus 104 elak~~~~~~~~~fvN~vL~~~~r~~ 129 (429)
T 1sqg_A 104 EGAIAIKRPQLKGLINGVLRQFQRQQ 129 (429)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhHHHHHHHHHHhh
Confidence 99999999889999999999999864
No 6
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.3e-24 Score=203.24 Aligned_cols=132 Identities=10% Similarity=-0.023 Sum_probs=114.8
Q ss_pred cCCCCccHHHHHHHHHHHHHHHhcCCChHHHHHHHhcccCCCCCccchhhhhhhhcccCCCCCCcccchhHHHHhhhhhh
Q 027155 15 SGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDE 94 (227)
Q Consensus 15 ~~~~~~R~~aRe~Avq~Lyq~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 94 (227)
.++..+++.+|+.|+++||+++.++...+.++..++.. +.
T Consensus 4 ~~~~~~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~------------------~~---------------------- 43 (450)
T 2yxl_A 4 EKKKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKK------------------HD---------------------- 43 (450)
T ss_dssp --CCBCCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHHH------------------TT----------------------
T ss_pred cccccCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHh------------------cc----------------------
Confidence 34556678899999999999999888888877766541 00
Q ss_pred HHHHHHHhhhcCCCcccccH-HHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHHHHhhhhcCCc
Q 027155 95 EESAIEAEVLSAPPKLVYSK-LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTR 173 (227)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~-~Dr~~~~~Lv~gvlr~~~~lD~iI~~~l~k~w~l~Rl~~vldraILRlalyELl~~~iP 173 (227)
.+. .|++|+++||+||+||+..||++|+++++ + ++++++++ +++|||+|+|||+| ++|
T Consensus 44 -----------------l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~iLrla~yell~-~ip 102 (450)
T 2yxl_A 44 -----------------VEEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVG-V-TPLILDPW-LRAALRVAVDIALF-HDP 102 (450)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-CGGGSCHH-HHHHHHHHHHHHHH-SCB
T ss_pred -----------------CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-C-ChhhcCHH-HHHHHHHHHHHHhc-CCC
Confidence 123 68999999999999999999999999994 3 88999997 79999999999999 999
Q ss_pred hhhHHH----HHHHHHHhhCCCCCCChhHHHHhHHHhh
Q 027155 174 HQIVIN----EAVDLAKRFCDGAAPRIINGCLRTFVRN 207 (227)
Q Consensus 174 ~~vaIn----EaVeLAK~~g~~~s~~FVNaVLr~i~r~ 207 (227)
++++|| |+|++||.|+++++++|||||||++.|.
T Consensus 103 ~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~ 140 (450)
T 2yxl_A 103 SSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEY 140 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred chHHhccccHHHHHHHHhccccccccchHHHHHHHhhc
Confidence 999999 9999999999888999999999999986
No 7
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=72.26 E-value=17 Score=28.40 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHhhCCCCCCChhHHHHhHH
Q 027155 149 QPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 204 (227)
Q Consensus 149 ~Rl~~vldraILRlalyELl~~~iP~~vaInEaVeLAK~~g~~~s~~FVNaVLr~i 204 (227)
++++-. -.++...|+.|-.-..+.....|+||+-+...|+.....+=.+|.||++
T Consensus 96 kkidll-t~avilcalseq~a~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151)
T 1q8c_A 96 KKIDLL-TTAVVLCALSEQKAHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151)
T ss_dssp --CCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred chhhHH-HHHHHHHHhhHHHhhcCCCchhHHHHHHHHHHhhhchhHHHHHHHHHhh
Confidence 345554 5788888888877777889999999999999999877777778888764
No 8
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=34.80 E-value=24 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCChhHHHHhHHHhh
Q 027155 175 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 207 (227)
Q Consensus 175 ~vaInEaVeLAK~~g~~~s~~FVNaVLr~i~r~ 207 (227)
.-+|++|++.|-..+ ..+.++|++||.+-.+.
T Consensus 37 ~elI~~A~~~a~~~~-~~s~~Yi~~Il~~W~~~ 68 (78)
T 2zc2_A 37 PDLVRSALREAVFNG-KTNWNYIQAILRNWRHE 68 (78)
T ss_dssp HHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 457788888886544 45789999999998765
No 9
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=23.40 E-value=60 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCChhHHHHhHHHhh
Q 027155 175 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 207 (227)
Q Consensus 175 ~vaInEaVeLAK~~g~~~s~~FVNaVLr~i~r~ 207 (227)
.-+|-+|++.|...+ ..+.++|++||.+-.+.
T Consensus 42 ~elI~~A~~~av~~~-~~~~~Yi~~IL~~W~~~ 73 (83)
T 2i5u_A 42 EQLIVKAIEIAIDAN-ARNYNYINAILKDWEQR 73 (83)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 345667777776654 34678999999998754
No 10
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=19.98 E-value=57 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhcC-CchhhHHHHHHHHHHhhCC-CCCCChhHHHHhHH
Q 027155 156 ELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCD-GAAPRIINGCLRTF 204 (227)
Q Consensus 156 draILRlalyELl~~~-iP~~vaInEaVeLAK~~g~-~~s~~FVNaVLr~i 204 (227)
|.--+|-|+-.++-.+ ||...||..|+..|++... .-+.+|.-||=.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4456788888887665 8999999999999988753 23455666655544
Done!