BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027156
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5U6Y8|OXLA_ECHOC L-amino-acid oxidase OS=Echis ocellatus PE=1 SV=1
Length = 504
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 118 LSVVLSYGQVLEADNSNLSVLISIDEKS----SDLSALFPRQSYTMKGETPRNDVRHHC- 172
+ V+++YG D+SN + ++++E + SDLS++ + P+ND++ C
Sbjct: 384 VGVIIAYGI---GDDSNFFLSLTLNECADIVFSDLSSIH---------QLPKNDIQKFCN 431
Query: 173 PMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADR 210
P +I +W TF+ F+++ LT PA R
Sbjct: 432 PSVIQKWSLDRYAMGAITTFTPYQFQDYSKALTAPAGR 469
>sp|Q6GEE3|UREE_STAAR Urease accessory protein UreE OS=Staphylococcus aureus (strain
MRSA252) GN=ureE PE=3 SV=1
Length = 150
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIVVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q7A065|UREE_STAAW Urease accessory protein UreE OS=Staphylococcus aureus (strain MW2)
GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|A8Z388|UREE_STAAT Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q6G731|UREE_STAAS Urease accessory protein UreE OS=Staphylococcus aureus (strain
MSSA476) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q7A429|UREE_STAAN Urease accessory protein UreE OS=Staphylococcus aureus (strain
N315) GN=ureE PE=1 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q99RY1|UREE_STAAM Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|A6QJD1|UREE_STAAE Urease accessory protein UreE OS=Staphylococcus aureus (strain
Newman) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q5HDR7|UREE_STAAC Urease accessory protein UreE OS=Staphylococcus aureus (strain COL)
GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q2YYQ5|UREE_STAAB Urease accessory protein UreE OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|A5IV72|UREE_STAA9 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH9)
GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q2G2K8|UREE_STAA8 Urease accessory protein UreE OS=Staphylococcus aureus (strain NCTC
8325) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q2FEK2|UREE_STAA3 Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|A6U415|UREE_STAA2 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH1)
GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|A7X5M4|UREE_STAA1 Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 92 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSAL 151
LE + + R+ + TE+G RL + L YG +L AD+ N +I +D S DL +
Sbjct: 27 LENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVI 83
Query: 152 FPRQSYTMKGETPRNDVRHHCPM------LISQWQYAV 183
PR M G+ H P ++ Q+ Y V
Sbjct: 84 QPRTLQEM-GDIAHQLGNRHLPAQFTETEMLVQYDYLV 120
>sp|Q8CNC8|UREE_STAES Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDV 168
E+G RL + L YG +L D++N +I +D S DL + PR M G+
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPRNLKEM-GDIAHQLG 99
Query: 169 RHHCP-------MLISQWQYAVTR--KDMAETFSFKDFK 198
H P MLI Q+ Y V K++ +S +D K
Sbjct: 100 NRHLPAQFTETEMLI-QYDYLVEDLLKELGIPYSHEDRK 137
>sp|Q5HLW0|UREE_STAEQ Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDV 168
E+G RL + L YG +L D++N +I +D S DL + PR M G+
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPRNLKEM-GDIAHQLG 99
Query: 169 RHHCP-------MLISQWQYAVTR--KDMAETFSFKDFK 198
H P MLI Q+ Y V K++ +S +D K
Sbjct: 100 NRHLPAQFTETEMLI-QYDYLVEDLLKELGIPYSHEDRK 137
>sp|Q4A0J6|UREE_STAS1 Urease accessory protein UreE OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDV 168
E+G RL + L YG +L D+ N +I +D S DL + PR M G+
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYKDDKN---MIVVDVNSEDLLVIKPRTLQEM-GDIAHQLG 99
Query: 169 RHHCPM------LISQWQYAVTR--KDMAETFSFKDFK 198
H P ++ Q+ Y V KD+ + +D K
Sbjct: 100 NRHLPAQFTETEMLVQYDYLVESLLKDLGIPYEHEDRK 137
>sp|Q65T53|CYSJ_MANSM Sulfite reductase [NADPH] flavoprotein alpha-component
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=cysJ PE=3 SV=1
Length = 597
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 37/179 (20%)
Query: 58 RGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVG---- 113
R ++V F+ L G K D G +D + IN ++ ++ QP V
Sbjct: 248 RDSAKDVRHFEFDLSGSGLQYKAGDALGVWAENDPDLINEVLGLL--KIQPDESVQLNGK 305
Query: 114 ---------SRLHLS-----VVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTM 159
SRL L+ V Y Q+ A+N L+ L+S D+K +D
Sbjct: 306 SLDIHGALLSRLELTQNTPAFVKGYAQL--ANNKKLTALVSSDKKLADYV---------- 353
Query: 160 KGETPRNDVRHHCPMLISQWQYA-VTRKDMAETFSFKDFKEHGG---YLTIPADRFLHE 214
+TP DV H P IS Q+A + R +S E G +L++ RF HE
Sbjct: 354 -NDTPIVDVLHDFPAKISAQQFADLLRPLTPRLYSISSSPEEVGEEVHLSVGVVRFEHE 411
>sp|A9KHK4|GLRP_CLOPH D-galactosyl-beta-1->4-L-rhamnose phosphorylase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_1920 PE=1 SV=1
Length = 722
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 4 KAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEE 63
+ A++ + L+S+ F +++LI ++SLSG P DV + + + +G +EE
Sbjct: 452 RIAVLHSWGSLRSWTLSGHFHETYMHDLIHINESLSGLPFDV---KFINFEDINQGALEE 508
Query: 64 VSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 104
V D+V I AG + G D E I L R + +
Sbjct: 509 V---DVV---INAGIMGSAWTGGQAWEDQEIIERLTRFVYE 543
>sp|B8DGL7|Y2435_LISMH UPF0145 protein LMHCC_2435 OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=LMHCC_2435 PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q9|Y240_LISIN UPF0145 protein lin0240 OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lin0240 PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q724K5|Y219_LISMF UPF0145 protein LMOf2365_0219 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=LMOf2365_0219 PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q8|Y208_LISMO UPF0145 protein lmo0208 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=lmo0208 PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|C1KYE1|Y206_LISMC UPF0145 protein Lm4b_00206 OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=Lm4b_00206 PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q8VMY3|Y208_LISIV UPF0145 protein OS=Listeria ivanovii PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q8VMW4|Y194_LISSS UPF0145 protein lse_0194 OS=Listeria seeligeri serovar 1/2b (strain
ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) GN=vclB
PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAQDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|P52686|SDSB_PSES9 SDS degradation transcriptional activation protein OS=Pseudomonas
sp. (strain ATCC 19151) GN=sdsB PE=4 SV=1
Length = 306
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 13 RLKSFGDKLGFAT---LQLNELIETSDSLSGSPIDVVASEL----LKLLGLQRGKMEEVS 65
+L G LG + L L+ SD LS +P+DVVA E+ L LL L G + + S
Sbjct: 211 QLAESGQPLGIECDNFMALKALVAESDVLSMAPLDVVAEEIEAGRLALLELAPGLLSQRS 270
Query: 66 QFDLV 70
+ LV
Sbjct: 271 AYGLV 275
>sp|B9DLY1|UREE_STACT Urease accessory protein UreE OS=Staphylococcus carnosus (strain
TM300) GN=ureE PE=3 SV=1
Length = 150
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDV 168
E+G RL V L YG +L D+ N +I +D S D+ + PR M G+
Sbjct: 44 GNEIGIRLKNPVDLEYGDILYQDDHN---MIVVDVNSEDILVIQPRTLKEM-GDIAHQLG 99
Query: 169 RHHCPM------LISQWQYAV 183
H P ++ Q+ Y V
Sbjct: 100 NRHLPTQFTENEMLVQYDYLV 120
>sp|O51053|QUEA_BORBU S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=queA PE=3 SV=2
Length = 343
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 66 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMA-QPATEVGSRLHLSVVLSY 124
++D + +H+GAG K H++ + L++ + + Q A +G R+ LS+V +
Sbjct: 194 EYDFITLHVGAGTFLPVRSKKVEEHNMHFETFLIKDFVAVRLQNAKLLGKRI-LSIVTTT 252
Query: 125 GQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160
+ LE+ N ++S++L ++P ++Y K
Sbjct: 253 LRALESSYDNNLKKFKTGQQSTNL-FIYPGKNYCFK 287
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSY 124
S F + V GAGEK + + + + +L + L RV +A A + + + V++
Sbjct: 9 STFVVFFVASGAGEKQGESQLQQIYDEL---SILSRVTNAIALQAAALSKTVKIREVIT- 64
Query: 125 GQVLEADNSNLSVLISID 142
++L+ DN N S L+S+D
Sbjct: 65 -ELLKVDNGNFSNLLSLD 81
>sp|Q8VL64|Y208_LISWE UPF0145 protein OS=Listeria welshimeri PE=3 SV=1
Length = 110
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMESRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|A0AF06|Y170_LISW6 UPF0145 protein lwe0170 OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=lwe0170 PE=3 SV=1
Length = 110
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMESRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q55GS3|DICB_DICDI Discoidin-inducing complex subunit B OS=Dictyostelium discoideum
GN=dicB PE=1 SV=1
Length = 607
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 82 DDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHL-SVVLSYGQVLEADNSNLSVLIS 140
+D+ K VA D + + V L SRL+L S+V + + +NS LS+L S
Sbjct: 226 NDQSKIVAIDADNVKISGVVTLNDQSSIQLTSSRLYLDSLVTATTSSILVNNSTLSILQS 285
Query: 141 IDEKSSDLSALFPRQSYTMK 160
I S SA+F +T+K
Sbjct: 286 IPTTFSPASAVFKGSVFTIK 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,276,006
Number of Sequences: 539616
Number of extensions: 3154598
Number of successful extensions: 7709
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7693
Number of HSP's gapped (non-prelim): 37
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)