Query 027156
Match_columns 227
No_of_seqs 108 out of 110
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3635 Predicted phosphoglyce 100.0 6.8E-41 1.5E-45 310.9 14.9 162 2-221 246-408 (408)
2 PRK04024 cofactor-independent 100.0 2.4E-34 5.3E-39 271.2 15.6 169 2-227 243-412 (412)
3 PRK04135 cofactor-independent 100.0 4.3E-34 9.3E-39 268.3 14.6 159 2-227 236-395 (395)
4 PRK04200 cofactor-independent 100.0 6.2E-31 1.4E-35 246.9 13.5 160 2-217 233-394 (395)
5 TIGR00306 apgM 2,3-bisphosphog 100.0 4.1E-30 8.9E-35 241.5 14.2 159 2-217 237-396 (396)
6 TIGR02535 hyp_Hser_kinase prop 100.0 4.6E-30 9.9E-35 241.1 13.5 160 2-216 234-395 (396)
7 PF01676 Metalloenzyme: Metall 99.8 1.6E-19 3.4E-24 159.4 6.2 162 2-216 85-250 (252)
8 PRK12383 putative mutase; Prov 99.2 2E-10 4.4E-15 109.1 12.2 85 2-108 244-329 (406)
9 TIGR01696 deoB phosphopentomut 98.6 6.3E-07 1.4E-11 84.9 13.5 145 17-226 222-379 (381)
10 PLN02538 2,3-bisphosphoglycera 98.6 3.6E-07 7.9E-12 90.0 11.2 77 24-108 385-463 (558)
11 PRK05434 phosphoglyceromutase; 98.3 2.2E-06 4.8E-11 83.8 8.9 59 42-108 371-430 (507)
12 PRK05362 phosphopentomutase; P 98.1 2.5E-05 5.4E-10 74.4 11.8 60 42-108 260-321 (394)
13 TIGR01307 pgm_bpd_ind 2,3-bisp 97.8 0.00021 4.6E-09 70.0 10.7 59 42-108 365-424 (501)
14 cd00016 alkPPc Alkaline phosph 97.1 0.006 1.3E-07 57.9 11.8 59 40-107 230-291 (384)
15 COG1015 DeoB Phosphopentomutas 96.5 0.017 3.7E-07 55.1 9.5 107 24-179 248-357 (397)
16 KOG4513 Phosphoglycerate mutas 94.4 0.2 4.4E-06 48.4 8.4 96 45-179 391-487 (531)
17 COG0696 GpmI Phosphoglyceromut 93.6 0.4 8.7E-06 47.3 8.9 57 44-108 374-431 (509)
18 PF01663 Phosphodiest: Type I 91.2 0.4 8.6E-06 42.6 5.2 44 65-108 182-228 (365)
19 PRK10518 alkaline phosphatase; 80.0 15 0.00033 36.3 9.9 140 40-220 323-474 (476)
20 KOG0780 Signal recognition par 71.6 51 0.0011 32.6 10.7 152 2-200 129-293 (483)
21 PF00884 Sulfatase: Sulfatase; 67.3 13 0.00028 31.8 5.3 31 90-122 215-245 (308)
22 PF00448 SRP54: SRP54-type pro 66.4 21 0.00046 30.5 6.5 50 10-76 44-93 (196)
23 PRK01395 V-type ATP synthase s 63.4 18 0.00039 28.4 5.0 51 1-73 2-52 (104)
24 PRK02228 V-type ATP synthase s 58.4 58 0.0013 25.1 7.0 67 3-105 1-68 (100)
25 PRK11598 putative metal depend 58.0 2.1E+02 0.0045 28.7 13.9 20 90-109 422-441 (545)
26 KOG2645 Type I phosphodiestera 57.4 38 0.00083 33.0 7.1 62 42-109 156-220 (418)
27 COG1436 NtpG Archaeal/vacuolar 56.3 54 0.0012 26.0 6.6 68 1-103 1-68 (104)
28 TIGR02335 hydr_PhnA phosphonoa 54.4 40 0.00086 32.3 6.6 49 47-105 177-228 (408)
29 PRK03957 V-type ATP synthase s 52.6 35 0.00075 26.5 4.9 50 3-73 1-51 (100)
30 KOG2126 Glycosylphosphatidylin 50.9 17 0.00038 38.5 3.8 76 43-133 191-270 (895)
31 PRK01189 V-type ATP synthase s 50.6 42 0.00091 26.4 5.1 51 1-73 1-52 (104)
32 smart00098 alkPPc Alkaline pho 45.3 97 0.0021 30.2 7.7 60 40-108 233-295 (419)
33 COG0541 Ffh Signal recognition 41.8 1.7E+02 0.0037 29.1 8.8 144 10-200 143-292 (451)
34 COG1419 FlhF Flagellar GTP-bin 38.2 1.1E+02 0.0025 29.8 6.9 43 10-75 248-290 (407)
35 COG1785 PhoA Alkaline phosphat 38.0 1.3E+02 0.0028 30.1 7.4 61 40-109 279-342 (482)
36 PRK12723 flagellar biosynthesi 35.5 3.5E+02 0.0075 26.0 9.8 46 171-220 339-387 (388)
37 COG0552 FtsY Signal recognitio 34.0 1.4E+02 0.0031 28.5 6.8 144 11-199 183-336 (340)
38 COG1902 NemA NADH:flavin oxido 32.3 79 0.0017 30.1 4.8 77 17-102 157-246 (363)
39 TIGR01425 SRP54_euk signal rec 31.9 4.2E+02 0.0091 25.9 9.8 27 171-200 266-292 (429)
40 cd00758 MoCF_BD MoCF_BD: molyb 31.2 76 0.0017 25.1 3.9 50 9-77 19-68 (133)
41 cd01137 PsaA Metal binding pro 31.0 88 0.0019 28.2 4.8 69 6-102 19-88 (287)
42 PF01037 AsnC_trans_reg: AsnC 30.4 1.4E+02 0.0029 20.4 4.7 29 65-107 33-61 (74)
43 PRK11560 phosphoethanolamine t 30.0 3.4E+02 0.0073 27.4 9.0 19 90-108 436-454 (558)
44 cd01421 IMPCH Inosine monophos 29.5 13 0.00028 32.6 -0.9 33 65-97 90-122 (187)
45 cd01017 AdcA Metal binding pro 29.3 99 0.0022 27.5 4.7 54 7-73 6-59 (282)
46 PRK13011 formyltetrahydrofolat 29.1 1.2E+02 0.0027 27.7 5.4 53 5-73 120-172 (286)
47 COG1524 Uncharacterized protei 28.7 45 0.00099 31.7 2.6 45 64-108 215-262 (450)
48 PRK06027 purU formyltetrahydro 28.6 1.4E+02 0.003 27.3 5.6 53 5-73 120-172 (286)
49 PRK09598 lipid A phosphoethano 28.1 2.1E+02 0.0045 28.6 7.1 19 91-109 409-427 (522)
50 PRK10649 hypothetical protein; 27.6 2.6E+02 0.0055 28.2 7.7 102 90-224 431-533 (577)
51 PF00994 MoCF_biosynth: Probab 26.5 52 0.0011 26.2 2.2 47 9-73 17-63 (144)
52 PF00205 TPP_enzyme_M: Thiamin 26.5 84 0.0018 24.6 3.4 55 11-77 28-87 (137)
53 cd01020 TroA_b Metal binding p 25.6 1.3E+02 0.0027 26.7 4.7 53 7-73 5-59 (264)
54 PRK09545 znuA high-affinity zi 25.3 1.2E+02 0.0025 27.9 4.5 69 6-102 26-95 (311)
55 TIGR00177 molyb_syn molybdenum 24.8 1.2E+02 0.0025 24.5 4.0 47 9-73 27-73 (144)
56 cd01016 TroA Metal binding pro 24.6 1.7E+02 0.0036 26.2 5.3 70 6-102 3-72 (276)
57 COG2242 CobL Precorrin-6B meth 24.6 1E+02 0.0022 27.0 3.8 64 14-122 74-137 (187)
58 PF01990 ATP-synt_F: ATP synth 24.4 1.2E+02 0.0027 22.6 3.9 65 6-105 2-66 (95)
59 PRK11889 flhF flagellar biosyn 23.1 4.6E+02 0.0099 26.0 8.2 56 2-77 269-331 (436)
60 cd01145 TroA_c Periplasmic bin 23.0 1.9E+02 0.0042 24.4 5.2 54 6-73 4-58 (203)
61 PRK14723 flhF flagellar biosyn 22.9 2.2E+02 0.0048 30.0 6.5 27 171-200 350-377 (767)
62 KOG2125 Glycosylphosphatidylin 22.1 1.6E+02 0.0035 30.9 5.2 44 65-108 190-236 (760)
63 PRK14974 cell division protein 21.9 4.3E+02 0.0094 24.8 7.7 27 171-200 306-332 (336)
64 cd01019 ZnuA Zinc binding prot 21.5 1.5E+02 0.0032 26.7 4.4 55 6-73 5-59 (286)
65 TIGR00655 PurU formyltetrahydr 21.3 2E+02 0.0044 26.3 5.3 26 5-30 115-140 (280)
66 COG2047 Uncharacterized protei 21.1 1.6E+02 0.0036 26.9 4.5 31 5-35 164-194 (258)
67 TIGR02764 spore_ybaN_pdaB poly 20.9 4.8E+02 0.01 21.4 7.4 70 12-104 110-179 (191)
68 TIGR02884 spore_pdaA delta-lac 20.6 5.2E+02 0.011 22.3 7.5 71 13-105 143-213 (224)
No 1
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-41 Score=310.92 Aligned_cols=162 Identities=18% Similarity=0.238 Sum_probs=145.5
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|||||||++++++||+|+++|||||++||+||+.||+ |++++++|+++| ++|||||||++++|++|
T Consensus 246 glk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~dtn----~~~k~k~a~eal----------~~yDfv~vhik~tDeag 311 (408)
T COG3635 246 GLKGACIAAVPLIKGLARLVGMDVIEVEGATGYIDTN----YRGKAKAAIEAL----------KEYDFVFVHIKATDEAG 311 (408)
T ss_pred CcceEEEEecHHHHhHHHHhCCceeecccccCccCcc----HHHHHHHHHHHH----------hhCCEEEEEeccCcccc
Confidence 8999999999999999999999999999999999998 999999999999 99999999999999999
Q ss_pred ccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEee
Q 027156 82 DDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k 160 (227)
|+| .++|+++||++|++++++++ +.. ...+++|| + | |+||+ ++
T Consensus 312 HdG~~e~Kv~~IE~iD~~i~pll~-~~~------~~~~i~vt----------------~-----D-HsTPv------~v- 355 (408)
T COG3635 312 HDGDFEGKVRVIEDIDKAIGPLLD-LDL------DEDVIAVT----------------G-----D-HSTPV------SV- 355 (408)
T ss_pred CCCCHHHhHHHHHHHHHHhhhhhc-ccc------CCcEEEEe----------------C-----C-CCCcc------cc-
Confidence 999 77788899999999999987 221 12455655 2 7 99996 99
Q ss_pred CCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHHHhcC
Q 027156 161 GETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWK 221 (227)
Q Consensus 161 ~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~k 221 (227)
++|++||||++| |.. .+|+|.|+.|+|.+|++ |++|+|+|.++|++++.+++|
T Consensus 356 ----k~Hs~dPVPili--~~~-~v~~D~v~~F~E~~~~~-G~Lgri~g~dlm~ill~~~~r 408 (408)
T COG3635 356 ----KDHSGDPVPILI--YGP-YVRRDDVKRFDEFSCAR-GSLGRIRGSDLMPILLDLAGR 408 (408)
T ss_pred ----cccCCCCccEEE--ecC-CcccCccceecHhhhhc-CCcceeehHHHHHHHHHhhcC
Confidence 566699999999 766 44999999999999777 799999999999999999876
No 2
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=100.00 E-value=2.4e-34 Score=271.21 Aligned_cols=169 Identities=21% Similarity=0.279 Sum_probs=151.2
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|||||+|+++++++|||+++||+++.+||+||+.||+ |.+++++++++| ++|||||+|++++|++|
T Consensus 243 gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t~----~~~k~~~~~~~l----------~~~Dfv~vh~~~~D~~G 308 (412)
T PRK04024 243 GLKAACVAGTALIKGIARMVGMDVITVEGATGGKDTN----YMAKAKAAVELL----------KEYDFVLLNIKGTDEAG 308 (412)
T ss_pred CCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCCC----HHHHHHHHHHHh----------ccCCEEEEeccCcchhh
Confidence 8999999999999999999999999999999999997 999999999999 78999999999999999
Q ss_pred ccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEee
Q 027156 82 DDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k 160 (227)
|.| .++|+++||.+|+.++.+++.++.. . .+++|| .| |.||. ++
T Consensus 309 H~gd~~~k~~aiE~iD~~l~~il~~l~~~----~--~~liIT---------------------aD-Hgtp~------~~- 353 (412)
T PRK04024 309 HDGDFEGKVEVIEKIDKMLGYILDNLDLD----E--VYIAVT---------------------GD-HSTPV------EV- 353 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcC----C--CEEEEe---------------------cC-CCCCc------cc-
Confidence 999 7778889999999999999887521 2 244544 26 88875 66
Q ss_pred CCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHHHhcCCcCCCC
Q 027156 161 GETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKAPKYGA 227 (227)
Q Consensus 161 ~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~kapKYGA 227 (227)
++|+++|||+++ +++ ..|+|.++.|+|.+|.+ ||++++++.++|+.++.+++|+.||||
T Consensus 354 ----~~HT~~pVP~ii--~g~-~v~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l~~~~~~~~~g~ 412 (412)
T PRK04024 354 ----KDHSGDPVPILI--YGP-GVRVDDVEKFNELSAAK-GGLGRIRGLDVMPILLDLMNRAEKFGA 412 (412)
T ss_pred ----ccCCCCCEeEEE--EcC-CccCCCCCccCHHHHhC-CCCCcccHHHHHHHHHHHhchHhhcCC
Confidence 567799999999 555 66899999999999766 799999999999999999999999998
No 3
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=100.00 E-value=4.3e-34 Score=268.26 Aligned_cols=159 Identities=20% Similarity=0.335 Sum_probs=141.0
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|||||+|++++++||||+++||+|++ ||+ + |.+++++++++| ++|||||||++++|++|
T Consensus 236 Glkga~Ia~~~l~kGi~~~~Gm~~i~-~ga------~----~~~k~~~a~~~l----------~~~DfV~vhvk~~DeaG 294 (395)
T PRK04135 236 KLKAAAIASYPMYRGLAKLVGMDVLP-TGQ------T----LEDEIKTLKENW----------NDYDFFFLHVKKTDSYG 294 (395)
T ss_pred CCceEEEehhHHHHHHHHHcCCeecC-CCC------C----HHHHHHHHHHHH----------hcCCEEEEEeccCchhh
Confidence 89999999999999999999999999 996 4 999999999999 88999999999999999
Q ss_pred ccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEee
Q 027156 82 DDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k 160 (227)
|+| .++|+++||+||+.+..++ .++ . .+++|| + | |+||. +.
T Consensus 295 H~gd~~~Kv~~IE~iD~~l~~ll-~l~------~--~~ivVT----------------~-----D-H~TP~------~~- 336 (395)
T PRK04135 295 EDGNFEEKVKVIEEVDALLPEIL-ALK------P--DVLVIT----------------G-----D-HSTPA------VL- 336 (395)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh-cCC------C--cEEEEe----------------C-----C-CCCcc------cc-
Confidence 999 6677779999999777888 432 2 145544 2 7 99996 67
Q ss_pred CCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHHHhcCCcCCCC
Q 027156 161 GETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKAPKYGA 227 (227)
Q Consensus 161 ~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~kapKYGA 227 (227)
++|+.+|||+++ |++ ..|+|.+++|+|.++.+ ||+++++|.++|+.++.+++|+.||||
T Consensus 337 ----~~Hs~dPVP~li--~g~-~~~~D~v~~F~E~~~~~-G~L~~~~G~~lm~~~l~~~~~~~~~G~ 395 (395)
T PRK04135 337 ----KGHSWHPVPLLL--YSK-YCRPDLSQRFTERECAR-GGLGHIPAVDLMPLALAHALRLEKYGA 395 (395)
T ss_pred ----cccCCCCEeEEE--EcC-CCCCCCCCccCHHHHcC-CCcCcccHHHHHHHHHHhhhhHhhcCC
Confidence 667799999999 444 67899999999999766 799999999999999999999999998
No 4
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.97 E-value=6.2e-31 Score=246.85 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=139.8
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|||+|+|+++++++|+|+++||+|+.+||+||+.||+ |.+|+++++++| ++|||||||++++|+++
T Consensus 233 gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt~----~~~k~~~a~~~l----------~~~DfV~vh~~~~D~aG 298 (395)
T PRK04200 233 GLKGAVISAVDLLKGIGIYAGLDVIEVPGATGYLDTN----YEGKAEAALEAL----------KTHDFVFVHVEAPDEAG 298 (395)
T ss_pred CCceEEEeccHHHHHHHHHcCCccccCCCcccccccc----hHHHHHHHHHHh----------ccCCEEEEEecCcchhh
Confidence 8999999999999999999999999999999999997 999999999999 78999999999999999
Q ss_pred ccc-chhhhhhhHHHHH-HHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEe
Q 027156 82 DDK-GKAVAHDLEYINA-LVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTM 159 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~-lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~ 159 (227)
|+| .++|+++||.+|+ +++++++.++.. .. .+++|| . | |.||. ..
T Consensus 299 H~gd~~~kv~aiE~lD~~~~~~ll~al~~~---~~--~~l~it----------------~-----D-H~tp~------~~ 345 (395)
T PRK04200 299 HEGDLEAKIKAIEDIDERVVGPILEALKKY---ED--YRILVL----------------P-----D-HPTPI------EL 345 (395)
T ss_pred ccCCHHHHHHHHHHHHHHhHHHHHHHHHhc---CC--CEEEEe----------------c-----c-CCcCC------CC
Confidence 999 6777779999999 577899886420 02 345544 2 6 88875 66
Q ss_pred eCCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHH
Q 027156 160 KGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAF 217 (227)
Q Consensus 160 k~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evaf 217 (227)
++|+.+|||++| +++ .+|.|.++.|+|.+|.+ ||++++++.++|+.++.
T Consensus 346 -----~~Ht~~pVP~ii--~g~-~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l~ 394 (395)
T PRK04200 346 -----KTHTADPVPFLI--YGE-GIEPDGVQTFDEKSARK-GGLGLVEGCELMELLLK 394 (395)
T ss_pred -----CccCCCCEeEEE--EcC-CcCCCCCCccCHHHHcC-CCcccccHHHHHHHHhh
Confidence 667799999999 555 67899999999999776 79999999999999875
No 5
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.97 E-value=4.1e-30 Score=241.47 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=139.1
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|+|||+|+++++++|||+++||+|+.+||+||+.||+ |.+|+++++++| ++|||||||++++|+++
T Consensus 237 gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~~dt~----~~~k~~~~~~~l----------~~yDfv~v~~~~~D~aG 302 (396)
T TIGR00306 237 GLRGAMIAEVDLIKGLARLIGMDVIRVEGATGGIDTD----YRGKVRALILAL----------EEYDFVLVHTKGPDEAG 302 (396)
T ss_pred CCceEEEechHHHHHHHHHcCCeeecCCccccccccc----HHHHHHHHHHHh----------hcCCEEEEEecCCChhh
Confidence 8999999999999999999999999999999999997 999999999999 78999999999999999
Q ss_pred ccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEee
Q 027156 82 DDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k 160 (227)
|.| .++|+++||.+|+.+..+++.++.. + .+++|| .| |.||. ++
T Consensus 303 H~gd~~~k~~aIE~iD~~l~~~l~~l~~~----~--~~liiT---------------------aD-Hgtp~------~~- 347 (396)
T TIGR00306 303 HDGDPELKVRAIEKIDSKIVGPLLALDLD----E--TRLILT---------------------AD-HSTPV------EV- 347 (396)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhC----C--CEEEEe---------------------CC-CCCCC------CC-
Confidence 999 6667779999999887668776432 2 345544 26 88884 66
Q ss_pred CCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHH
Q 027156 161 GETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAF 217 (227)
Q Consensus 161 ~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evaf 217 (227)
.+|+++|||+++ +++ ..|+|.+++|+|.+|.+ |++++|++.++|+.+++
T Consensus 348 ----~~Ht~~pVP~ii--~g~-~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l~ 396 (396)
T TIGR00306 348 ----KDHSADPVPIVI--VGP-GVRVDEVKSFNEFACRK-GALGRIRGEDLMDILLD 396 (396)
T ss_pred ----CCCCCCCeeEEE--EeC-CccCCCCCCcChHHHhC-CCCCcccHHHHHHHHhC
Confidence 667799999999 444 67899999999999777 79999999999998863
No 6
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.97 E-value=4.6e-30 Score=241.08 Aligned_cols=160 Identities=19% Similarity=0.304 Sum_probs=138.5
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|+|+++|+++++++|||+++||+++.+||+||+.||+ |.+|+++++++| ++|||||||++++|+++
T Consensus 234 gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt~----~~~k~~~~~~~l----------~~~Dfv~vh~~~~D~aG 299 (396)
T TIGR02535 234 GIRGAMISAVDLLKGIGIYAGLERIEVEGATGYLDTN----YEGKVRAALEAL----------ETYDFVVVHVEAPDEAG 299 (396)
T ss_pred CCceEEEeccHHHHHHHHHcCCccccCCccccccccc----hHHHHHHHHHHH----------hhCCEEEEEeCCCChhh
Confidence 8999999999999999999999999999999999997 999999999999 78999999999999999
Q ss_pred ccc-chhhhhhhHHHHH-HHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEe
Q 027156 82 DDK-GKAVAHDLEYINA-LVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTM 159 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~-lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~ 159 (227)
|+| .++|+++||.+|+ ++++++++++.. ....+++|| . | |.||. +.
T Consensus 300 H~gd~~~kv~aIE~lD~~~~~~ll~al~~~----~~~~~~~vt----------------~-----D-H~tp~------~~ 347 (396)
T TIGR02535 300 HEGDLEAKIKAIELIDSRIVGPLLEALSDR----DEPFRILVL----------------P-----D-HPTPL------EL 347 (396)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEEe----------------e-----e-CccCC------CC
Confidence 999 6777779999999 577899887421 111345544 2 6 88875 56
Q ss_pred eCCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHH
Q 027156 160 KGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVA 216 (227)
Q Consensus 160 k~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~eva 216 (227)
++|+.+|||++|+ ++ .+|+|.+++|+|.+|.+ |+++++.+.++|+.++
T Consensus 348 -----~~Ht~~pVP~ii~--g~-~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~~ 395 (396)
T TIGR02535 348 -----KTHTAEPVPFLLY--GK-GIESDSVKTFDEKSARR-GGIGFVKGCELMDALI 395 (396)
T ss_pred -----CccCCCCEeEEEE--eC-CcCCCCCCccCHHHHcC-CCcccccHHHHHHHHh
Confidence 6677999999994 44 67899999999999777 7999999999999875
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.78 E-value=1.6e-19 Score=159.37 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=126.7
Q ss_pred CCceeEEecCchhhhhhhhhc-ceEeecCCcccccCCCCCCChhHH--HHHHHHHhccccCcccccCcccEEEEeccCCC
Q 027156 2 GLKAALITTNSRLKSFGDKLG-FATLQLNELIETSDSLSGSPIDVV--ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G-~~v~~~~g~tg~~dt~~~~~~~~~--a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d 78 (227)
|+++++|+.+.++.+++..+| +++++.+|+|+..+++ +.++ ++++++.| ++.+|||||+|+..+|
T Consensus 85 ~l~~~~ia~~~~~~~i~~~~~g~~v~~~~g~t~~~~~~----~~~~~~~~~~~~~l--------~~~~~~~v~~~~~~~D 152 (252)
T PF01676_consen 85 GLKGAGIAETPKIGGIADFFGGMDVISVEGATGDVDPD----MSAKEIAEAAIEAL--------KKDKYDFVFVHVKGTD 152 (252)
T ss_dssp THHEEEEEECHHHHHHHHHTTTEEEE--STSSCCGSTT----TTHHHHHHHHHHHH--------HHTTSSEEEEEEEHHH
T ss_pred CceecceecccccceeHHHhCCcccccccccccccccc----hhhHHHHHHHHHhh--------hcccCCeEEEeecCcc
Confidence 789999999999999999999 9999999999999996 6665 89999988 3478999999999999
Q ss_pred ccCccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCcee
Q 027156 79 KTNDDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSY 157 (227)
Q Consensus 79 ~a~h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy 157 (227)
++||.+ .+++.++||++|+.|++|++.++.. + .+.+|| + | |-++-
T Consensus 153 ~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~----~--~~liiT--a-------------------D-Hg~~~------ 198 (252)
T PF01676_consen 153 EAGHRGDPEAYIEAIERIDRFLGRLLEALDKE----D--DLLIIT--A-------------------D-HGNDE------ 198 (252)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHT----T--EEEEEE--E-------------------S-SBSTT------
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHhcC----C--CEEEEE--C-------------------C-CCCcc------
Confidence 999998 7777779999999999999987321 2 244544 2 4 55543
Q ss_pred EeeCCCCCCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHH
Q 027156 158 TMKGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVA 216 (227)
Q Consensus 158 ~~k~~~~~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~eva 216 (227)
+++. ..|+++|||+++ |++ ..|.|.+..|++.+... +..+.+.+..+++++.
T Consensus 199 ~~~~---~~Ht~~~VPll~--~g~-~~~~~~~~~~~~~~di~-~ti~~~~G~~~~~~~~ 250 (252)
T PF01676_consen 199 TMGH---TSHTREPVPLLI--YGP-GVRGDSVGEFGELADIA-PTILELLGLELPEEMT 250 (252)
T ss_dssp TSBS---SS-B-B-EEEEE--ECT-TEEE-SC-STSBCGHHH-HHHHHHHTGGHHTTCH
T ss_pred ccCC---cCCCCceEEEEE--EeC-CCccCccCcCCEEehHH-HHHHHHcCCCchHhhc
Confidence 4433 348899999999 555 77889999999988666 5888999988887764
No 8
>PRK12383 putative mutase; Provisional
Probab=99.18 E-value=2e-10 Score=109.07 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=69.4
Q ss_pred CCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 2 glkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
|+++++| |+.. |++..+|+|++..+. +.+.++.+++++|. ...+||||+|+..+|.+|
T Consensus 244 G~~v~~V---------GKi~--Di~s~~G~t~~~~~~---~t~~~~~~~l~aL~--------~~~~dlvfvnl~~~D~~G 301 (406)
T PRK12383 244 GVPVVLV---------GKVA--DIVNNPYGVSWQNLV---DTQRVMDITLDEFN--------THPTAFICTNIQETDLAG 301 (406)
T ss_pred CCCEEEE---------EEhH--HeeccCCcccccccC---CHHHHHHHHHHHHh--------cCCCCEEEEeccCCcccc
Confidence 5666666 5555 888899999976654 46799999999992 234899999999999999
Q ss_pred ccc-chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 82 DDK-GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 82 h~g-~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
|.+ .+.+..+||.+|+.++.+++.+++
T Consensus 302 H~~d~~~y~~aiE~iD~~lg~ll~~L~~ 329 (406)
T PRK12383 302 HAEDVARYAERLEVVDRNLARLLEAMTP 329 (406)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999 666677999999999999998864
No 9
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=98.62 E-value=6.3e-07 Score=84.85 Aligned_cols=145 Identities=10% Similarity=0.132 Sum_probs=95.6
Q ss_pred hhhhhcceEeec---------CCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCc-cCccc-c
Q 027156 17 FGDKLGFATLQL---------NELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TNDDK-G 85 (227)
Q Consensus 17 ~g~~~G~~v~~~---------~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~-a~h~g-~ 85 (227)
.....|.+|+.| .|+|....+. +.+..+.+++++|. ...+||||+|+...|. +||.+ .
T Consensus 222 ~l~~aG~~V~~VGki~DiF~g~Glt~a~~~~---~~~~~~~~~l~aL~--------~~~~~lif~nl~d~D~~~GH~~d~ 290 (381)
T TIGR01696 222 KLKDEGHDVISIGKIADIYDGEGITKKVRTT---SNMDGMDATIKEMK--------EDFTGISFTNLVDFDALWGHRRDV 290 (381)
T ss_pred HHHHCCCeEEEEccHHhEecCCCcccccCCC---CHHHHHHHHHHHHh--------cCCCCEEEEEeCCCccccCCCCCH
Confidence 345566666555 4555544443 57888999999992 2348999999999994 79999 5
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCc-CccCCceeEeeCCCC
Q 027156 86 KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLS-ALFPRQSYTMKGETP 164 (227)
Q Consensus 86 ~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~t-pl~P~QSy~~k~~~~ 164 (227)
+....+||.+|+.|+.+++.++++ . +++|+ + || -+ | ... |
T Consensus 291 ~~y~~ale~vD~~Lg~ll~~L~~~----t---llIIT--A-----DH---------------G~Dp-------~~~-~-- 331 (381)
T TIGR01696 291 AGYAAALELFDRRLPELFSLLRED----D---LLIIT--A-----DH---------------GNDP-------TWT-G-- 331 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----C---EEEEE--C-----CC---------------CCCC-------CCC-C--
Confidence 566669999999999999988642 2 34444 2 44 33 2 110 0
Q ss_pred CCCcCCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHHHhcCC-cCCC
Q 027156 165 RNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKA-PKYG 226 (227)
Q Consensus 165 ~~~~r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~ka-pKYG 226 (227)
.+|+|++||+++ |.+. .+.- ..+. . +.-..++.+.++..+|-. |.+|
T Consensus 332 t~HTre~VPlIi--~gp~-i~~g--~~l~-----~-----~~slaDIapTIldllGv~~p~~G 379 (381)
T TIGR01696 332 TDHTREYIPVLV--YSPK-VKPG--HSLG-----H-----RETFADIGATIADNFGTSDPEYG 379 (381)
T ss_pred CcCCCCCEeEEE--EECC-CCCC--ceeC-----C-----CCEehhHHHHHHHHcCcCCCCCC
Confidence 347899999999 4432 2211 0011 1 234578889999988876 7776
No 10
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=98.59 E-value=3.6e-07 Score=89.96 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=57.0
Q ss_pred eEeecCCc-ccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc-chhhhhhhHHHHHHHHH
Q 027156 24 ATLQLNEL-IETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRV 101 (227)
Q Consensus 24 ~v~~~~g~-tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g-~~~~~~~iE~iD~lvg~ 101 (227)
+.+.+|-- ..++|---.=+....+.++++.+ ...+|||||+|+..+|.+||.| .+++.++||.+|+.+++
T Consensus 385 ~~i~ipsp~v~tyd~~PeMSA~eVtd~~i~~i--------~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~ 456 (558)
T PLN02538 385 EYVEIPSDNGIPFNVQPKMKALEIAEKARDAL--------LSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKE 456 (558)
T ss_pred eEEECCCCCCCCcccCCCCCHHHHHHHHHHHH--------hcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34445542 23344332334556888888888 3357999999999999999999 56677799999999999
Q ss_pred HHHhcCC
Q 027156 102 ILQMAQP 108 (227)
Q Consensus 102 il~~~~~ 108 (227)
|++.++.
T Consensus 457 Il~al~~ 463 (558)
T PLN02538 457 ILDAVEQ 463 (558)
T ss_pred HHHHHHh
Confidence 9988743
No 11
>PRK05434 phosphoglyceromutase; Provisional
Probab=98.31 E-value=2.2e-06 Score=83.77 Aligned_cols=59 Identities=8% Similarity=0.223 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc-chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 42 ~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g-~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
+...++.+++++|. ..+|||||||++.+|.+||.| .+++.++||.+|+.|+.|++.++.
T Consensus 371 s~~e~~d~~i~~l~--------~~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~ 430 (507)
T PRK05434 371 SAYEVTDKLVEAIE--------SGKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLK 430 (507)
T ss_pred cHHHHHHHHHHHHh--------ccCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35668999999982 258999999999999999999 667777999999999999988754
No 12
>PRK05362 phosphopentomutase; Provisional
Probab=98.14 E-value=2.5e-05 Score=74.38 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCc-cCccc-chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TNDDK-GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 42 ~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~-a~h~g-~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
++...+.+++++|. +..+++|||+|+...|. +||.+ .+....+||.+|+.|+.+++.+++
T Consensus 260 ~~~~~~~~ale~L~-------~~~~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~ 321 (394)
T PRK05362 260 SNMDGMDATIEEMK-------EAGDNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE 321 (394)
T ss_pred CHHHHHHHHHHHHH-------hCCCCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57889999999991 02468999999999998 49987 556667999999999999998864
No 13
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=97.75 E-value=0.00021 Score=70.04 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccch-hhhhhhHHHHHHHHHHHHhcCC
Q 027156 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGK-AVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 42 ~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~-~~~~~iE~iD~lvg~il~~~~~ 108 (227)
.....+.++++.| +..+||||++|+..+|.+||.|.. +...+||.+|..||.|++.++.
T Consensus 365 sa~evtd~~i~~I--------~~~k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke 424 (501)
T TIGR01307 365 SAKAVTDAVLEAI--------AQGKFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKK 424 (501)
T ss_pred CHHHHHHHHHHHH--------hccCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556788888888 225699999999999999999954 7777999999999999999864
No 14
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=97.13 E-value=0.006 Score=57.86 Aligned_cols=59 Identities=7% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeccC--CCccCccc-chhhhhhhHHHHHHHHHHHHhcC
Q 027156 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDK-GKAVAHDLEYINALVRVILQMAQ 107 (227)
Q Consensus 40 ~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a--~d~a~h~g-~~~~~~~iE~iD~lvg~il~~~~ 107 (227)
.++.....++++++|. ++.+-.||||+. .|.++|.. .+.+...++.+|..|+.+++.++
T Consensus 230 ~psL~emt~~al~~L~---------~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~ 291 (384)
T cd00016 230 EPSLAEMTEKAIDVLS---------KNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAK 291 (384)
T ss_pred CCCHHHHHHHHHHHHH---------hcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999992 335777788886 89999998 45556699999999999998875
No 15
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.017 Score=55.13 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=72.9
Q ss_pred eEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcc-cEEEEeccCCC-ccCccc-chhhhhhhHHHHHHHH
Q 027156 24 ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF-DLVLVHIGAGE-KTNDDK-GKAVAHDLEYINALVR 100 (227)
Q Consensus 24 ~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~-DlVfvHv~a~d-~a~h~g-~~~~~~~iE~iD~lvg 100 (227)
|++.-.|.|....+. +.+......|+.++ ++++ .|||.++.-.| .+||-- ...=+++||.+|+-+.
T Consensus 248 DI~~~~Git~~~~~~---~n~~~~d~tl~~~~--------~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~ 316 (397)
T COG1015 248 DIYAGQGITEKVKAV---SNMDGMDVTLEEMK--------TAEFNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLP 316 (397)
T ss_pred hhhccccccccccCC---CcHHHHHHHHHHHh--------cCCCCcEEEEeeeecccccccccchHHHHHHHHHHHHHHH
Confidence 556667777776444 45667777777772 2344 49999999888 788854 3334559999999999
Q ss_pred HHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEeeCCCCCCCcCCCccEEEEEc
Q 027156 101 VILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQW 179 (227)
Q Consensus 101 ~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k~~~~~~~~r~pvP~li~~~ 179 (227)
++++.++++ + ++++ | .||- . +|| +.|+ +|+|+.+|+|+++.
T Consensus 317 e~~~~l~ed----D--lLii-T-------ADHG-----------n-DPT----------~~gT--dHTRE~iPvl~y~~ 357 (397)
T COG1015 317 ELIENLRED----D--LLII-T-------ADHG-----------N-DPT----------WGGT--DHTREYIPVLVYGP 357 (397)
T ss_pred HHHHhcCCC----C--EEEE-e-------cCCC-----------C-CCC----------CCCC--CccccccceEEEcC
Confidence 999999874 3 3333 2 2553 2 342 2233 69999999999444
No 16
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.2 Score=48.43 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc-chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEe
Q 027156 45 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLS 123 (227)
Q Consensus 45 ~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g-~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~ 123 (227)
..|.++.+.+ +...||+|.+++..+|-.+|-| +|.-+.+.|--|..|+.|.++.+. -+ +..+||
T Consensus 391 eva~ka~~~i--------e~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~-----~~-y~lvvT- 455 (531)
T KOG4513|consen 391 EVAEKARDAI--------ESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQ-----VG-YILVVT- 455 (531)
T ss_pred HHHHHHHHHH--------HcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHh-----cC-cEEEEE-
Confidence 3566666666 3356999999999999999999 666677999999999999998765 22 223333
Q ss_pred ccccccccCCCcceeecccccCCCCcCccCCceeEeeCCCCCCCcCCCccEEEEEc
Q 027156 124 YGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQW 179 (227)
Q Consensus 124 yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k~~~~~~~~r~pvP~li~~~ 179 (227)
.||-+. . + . ..--+|+...|+-.|||+.|-..
T Consensus 456 ------ADHGNA------E--k-----M-----v~~dgGk~tsHT~~~VPl~i~~p 487 (531)
T KOG4513|consen 456 ------ADHGNA------E--K-----M-----VKRDGGKLTSHTLKPVPLAIGGP 487 (531)
T ss_pred ------cCCCCH------H--H-----h-----ccCCCCccccccccccceEecCC
Confidence 144311 0 0 0 01235665678899999999433
No 17
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.4 Score=47.34 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc-chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 44 DVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 44 ~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g-~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
-....++++++ +...||+++++..-+|-.+|-| .+.-.+++|-+|.=|+.+.+....
T Consensus 374 ~evtd~~~~~i--------~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~ 431 (509)
T COG0696 374 KEVTDALVEAI--------EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKK 431 (509)
T ss_pred HHHHHHHHHHH--------hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777766 2245899999999999999999 555566999999999999988654
No 18
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=91.22 E-value=0.4 Score=42.62 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=36.9
Q ss_pred CcccEEEEeccCCCccCccc---chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 65 SQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 65 ~~~DlVfvHv~a~d~a~h~g---~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
.+.||+++|+..+|.++|.- ..+-...+.++|..|+.+++.++.
T Consensus 182 ~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~ 228 (365)
T PF01663_consen 182 ERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDE 228 (365)
T ss_dssp TTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999932 334567999999999999988764
No 19
>PRK10518 alkaline phosphatase; Provisional
Probab=80.00 E-value=15 Score=36.29 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEecc--CCCccCcccchhhhh-hhHHHHHHHHHHHHhcCCCcccCcce
Q 027156 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG--AGEKTNDDKGKAVAH-DLEYINALVRVILQMAQPATEVGSRL 116 (227)
Q Consensus 40 ~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~--a~d~a~h~g~~~~~~-~iE~iD~lvg~il~~~~~~~~~~~~~ 116 (227)
.+......++||++|. ++-+=-||-|| ..|.+.|...-.... ..-.+|+.|+..++..+.. ..
T Consensus 323 ~PsLaeMT~kAI~~Ls---------kn~~GFFLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~~-----~d 388 (476)
T PRK10518 323 VPTLAQMTDKAIDLLK---------KNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKD-----GN 388 (476)
T ss_pred CCCHHHHHHHHHHHhc---------cCCCceEEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcC-----CC
Confidence 4567889999999993 22232345555 467888886443333 6668999999999887652 12
Q ss_pred EEEEEEeccccccccCCCcc-eeecccccC--------CCCcCccCCceeEeeCCCCCCCcCCCccEEEEEccccceecC
Q 027156 117 HLSVVLSYGQVLEADNSNLS-VLISIDEKS--------SDLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQYAVTRKD 187 (227)
Q Consensus 117 ~~s~V~~yg~~~~~d~~~~~-vl~~~~~~d--------s~~tpl~P~QSy~~k~~~~~~~~r~pvP~li~~~~~~~tR~D 187 (227)
.++||+ . ||+... +++.....| .+-.|. .=||.--.+..-+|+...||+..++.+. +
T Consensus 389 TLVIVT--A-----DH~h~~~i~g~~~~~~g~~~~~~~~dg~~~--~l~y~~g~g~s~~HtG~dV~v~A~GP~A-----~ 454 (476)
T PRK10518 389 TLVIVT--A-----DHAHSSQIIAPDAKAPGLTQALNTKDGAVM--VVSYGNSEEDSQEHTGTQLRIAAYGPHA-----A 454 (476)
T ss_pred eEEEEE--c-----cCCCcceecCCCCCCCCcccccccCCCCee--EEEeccCCCCCcCcCCceeEEEecCCcc-----c
Confidence 567777 2 776332 222000000 001110 1123322223467999999999955542 2
Q ss_pred CCccCChHHHhhcCCccceeHHhHHHHHHHHhc
Q 027156 188 MAETFSFKDFKEHGGYLTIPADRFLHEVAFKLW 220 (227)
Q Consensus 188 ~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~ 220 (227)
. |. |.+.-..+.|.|+.-|+
T Consensus 455 ~---f~----------G~~eqt~if~~m~~Al~ 474 (476)
T PRK10518 455 N---VV----------GLTDQTDLFYTMKDALG 474 (476)
T ss_pred c---cc----------cceeccHHHHHHHHHhC
Confidence 1 22 23555566666666554
No 20
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=51 Score=32.59 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=86.9
Q ss_pred CCceeEEec-------CchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEec
Q 027156 2 GLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (227)
Q Consensus 2 glkaA~It~-------~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv 74 (227)
|.|.++|++ -+.|+--|.+++..++. .|.++ +.-..|++.++.. +...||+|+|..
T Consensus 129 G~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg-----syte~----dpv~ia~egv~~f--------Kke~fdvIIvDT 191 (483)
T KOG0780|consen 129 GYKVALVCADTFRAGAFDQLKQNATKARVPFYG-----SYTEA----DPVKIASEGVDRF--------KKENFDVIIVDT 191 (483)
T ss_pred CCceeEEeecccccchHHHHHHHhHhhCCeeEe-----ccccc----chHHHHHHHHHHH--------HhcCCcEEEEeC
Confidence 456666654 46778888888887764 23444 3666788888765 447899999984
Q ss_pred cCCCccCcccchhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCC
Q 027156 75 GAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154 (227)
Q Consensus 75 ~a~d~a~h~g~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~ 154 (227)
..- | +..-+-+++++. |.+...| +.+++++=-|-|++.+.-... +..+.| --..|.
T Consensus 192 SGR----h------~qe~sLfeEM~~-v~~ai~P-----d~vi~VmDasiGQaae~Qa~a-----Fk~~vd-vg~vIl-- 247 (483)
T KOG0780|consen 192 SGR----H------KQEASLFEEMKQ-VSKAIKP-----DEIIFVMDASIGQAAEAQARA-----FKETVD-VGAVIL-- 247 (483)
T ss_pred CCc----h------hhhHHHHHHHHH-HHhhcCC-----CeEEEEEeccccHhHHHHHHH-----HHHhhc-cceEEE--
Confidence 433 2 223445666554 5566666 433444433445555431111 111112 111221
Q ss_pred ceeEeeCCCCCCC-----c-CCCccEEEEEccccceecCCCccCChHHHhhc
Q 027156 155 QSYTMKGETPRND-----V-RHHCPMLISQWQYAVTRKDMAETFSFKDFKEH 200 (227)
Q Consensus 155 QSy~~k~~~~~~~-----~-r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~ 200 (227)
|.-+|..+-. + .-.+|+++++. +.+.|+.+.|+-+.|..+
T Consensus 248 ---TKlDGhakGGgAlSaVaaTksPIiFIGt---GEhmdDlE~F~pk~Fvsr 293 (483)
T KOG0780|consen 248 ---TKLDGHAKGGGALSAVAATKSPIIFIGT---GEHMDDLEPFDPKPFVSR 293 (483)
T ss_pred ---EecccCCCCCceeeehhhhCCCEEEEec---CccccccCCCChHHHHHH
Confidence 3222221211 1 13679999777 559999999999998875
No 21
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=67.34 E-value=13 Score=31.77 Aligned_cols=31 Identities=3% Similarity=0.235 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCcccCcceEEEEEE
Q 027156 90 HDLEYINALVRVILQMAQPATEVGSRLHLSVVL 122 (227)
Q Consensus 90 ~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~ 122 (227)
..|.++|..|+.+++.++... ..++ .++||+
T Consensus 215 ~~i~~~D~~l~~~~~~l~~~~-~~d~-Tiiiit 245 (308)
T PF00884_consen 215 NAIAYVDDQLGRFIEYLKEQG-LYDN-TIIIIT 245 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CGGG-EEEEEE
T ss_pred HHHHHHHHHhhhhhhhhhhcC-Cccc-ceeEEe
Confidence 378899999999998883321 2233 555655
No 22
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=66.42 E-value=21 Score=30.55 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=33.5
Q ss_pred cCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccC
Q 027156 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (227)
Q Consensus 10 ~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a 76 (227)
+.+.|+.+|+.+|+.++... ... +--..++++++.+ +.+++|+|||...+
T Consensus 44 a~eQL~~~a~~l~vp~~~~~-----~~~----~~~~~~~~~l~~~--------~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFYVAR-----TES----DPAEIAREALEKF--------RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHHHHHHHHTEEEEESS-----TTS----CHHHHHHHHHHHH--------HHTTSSEEEEEE-S
T ss_pred HHHHHHHHHHHhccccchhh-----cch----hhHHHHHHHHHHH--------hhcCCCEEEEecCC
Confidence 56788999999999998752 111 1334566677665 12569999998544
No 23
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=63.35 E-value=18 Score=28.42 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 1 mglkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
|-+|=|+|+..+.+.|| +.+|++++.+. -...+.++++.|. .+++-+||++
T Consensus 2 ~~~kIaVIGD~dtv~GF-rLaGi~~~~v~-------------~~ee~~~~i~~l~--------~~d~gII~It 52 (104)
T PRK01395 2 TMYKIGVVGDKDSILPF-KALGIDVFPVI-------------DEQEAINTLRKLA--------MEDYGIIYIT 52 (104)
T ss_pred cceeEEEEECHHHHHHH-HHcCCeeEEec-------------ChHHHHHHHHHHh--------cCCcEEEEEc
Confidence 45688999999999998 78999987762 2244566666651 2679999997
No 24
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=58.39 E-value=58 Score=25.14 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=45.0
Q ss_pred CceeEEecCchhhhhhhhhcceEee-cCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccC
Q 027156 3 LKAALITTNSRLKSFGDKLGFATLQ-LNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (227)
Q Consensus 3 lkaA~It~~~llkg~g~~~G~~v~~-~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~ 81 (227)
||-|+|+..+.+.|| +.+|++.+- + + .+..+.++++.| +..+++.+||++ .
T Consensus 1 mkIaVIGD~dtv~GF-rLaGi~~~~~~--------~-----~~ee~~~~l~~l-------~~~~d~gII~It---e---- 52 (100)
T PRK02228 1 MEIAVIGSPEFTTGF-RLAGIRKVYEV--------P-----DDEKLDEAVEEV-------LEDDDVGILVMH---D---- 52 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCceEEee--------C-----CHHHHHHHHHHH-------hhCCCEEEEEEe---h----
Confidence 788999999998888 789998542 2 1 224466666644 123789999998 3
Q ss_pred cccchhhhhhhHHHHHHHHHHHHh
Q 027156 82 DDKGKAVAHDLEYINALVRVILQM 105 (227)
Q Consensus 82 h~g~~~~~~~iE~iD~lvg~il~~ 105 (227)
...+.++..+..+++.
T Consensus 53 --------~~~~~i~e~i~~~~~~ 68 (100)
T PRK02228 53 --------DDLEKLPRRLRRTLEE 68 (100)
T ss_pred --------hHhHhhHHHHHHHHhc
Confidence 2456667777665544
No 25
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=58.04 E-value=2.1e+02 Score=28.74 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHhcCCC
Q 027156 90 HDLEYINALVRVILQMAQPA 109 (227)
Q Consensus 90 ~~iE~iD~lvg~il~~~~~~ 109 (227)
+.|.+.|..++.+++.++..
T Consensus 422 nsI~ytD~~lg~ii~~Lk~~ 441 (545)
T PRK11598 422 NTILYVDYIVDKAINLLKQH 441 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999887653
No 26
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=57.36 E-value=38 Score=33.01 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCc-ccc--hhhhhhhHHHHHHHHHHHHhcCCC
Q 027156 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTND-DKG--KAVAHDLEYINALVRVILQMAQPA 109 (227)
Q Consensus 42 ~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h-~g~--~~~~~~iE~iD~lvg~il~~~~~~ 109 (227)
+.+..+..+++ |.++ +..+.||..+=++.+|.++| -|. .+..+++..+|.+++.+++.++.-
T Consensus 156 ~~~~~~~~i~~-~~~~-----~~e~p~l~~~Y~~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~r 220 (418)
T KOG2645|consen 156 PLEERADTVLD-LDLP-----EKERPDLLLLYVEEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKDR 220 (418)
T ss_pred cHHHHHHHHhc-cccc-----cccCCCceEEeccCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47777778887 4333 34789999999999999999 453 336679999999999999887653
No 27
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=56.28 E-value=54 Score=25.98 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=49.3
Q ss_pred CCCceeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCcc
Q 027156 1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKT 80 (227)
Q Consensus 1 mglkaA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a 80 (227)
|.++=|+|-.-+.+.|| +.+|++++.+ .+.. .+ .++++++-| ..+++++++|| .
T Consensus 1 ~~~~I~VIGd~dtvtGF-rLaGv~~~~v------~~~~----~~-~~~~~~~~l--------~~~~~~iIiit---e--- 54 (104)
T COG1436 1 MMMKIAVIGDRDTVTGF-RLAGVRVVYV------ADDE----ED-ELRAALRVL--------AEDDVGIILIT---E--- 54 (104)
T ss_pred CceEEEEEEccchhhce-eeecceeEEE------ecCh----hH-HHHHHHHhh--------ccCCceEEEEe---H---
Confidence 56788899999988887 7889988762 1121 22 677888777 33699999999 3
Q ss_pred CcccchhhhhhhHHHHHHHHHHH
Q 027156 81 NDDKGKAVAHDLEYINALVRVIL 103 (227)
Q Consensus 81 ~h~g~~~~~~~iE~iD~lvg~il 103 (227)
...|++...+...+
T Consensus 55 ---------~~a~~i~~~i~~~~ 68 (104)
T COG1436 55 ---------DLAEKIREEIRRII 68 (104)
T ss_pred ---------HHHhhhHHHHHHHh
Confidence 26788888777765
No 28
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=54.40 E-value=40 Score=32.32 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHHHHHHhccccCcccccCcccEEEEeccCCCccCccc---chhhhhhhHHHHHHHHHHHHh
Q 027156 47 ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQM 105 (227)
Q Consensus 47 a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g---~~~~~~~iE~iD~lvg~il~~ 105 (227)
...++.+| +....||+++ ...|.++|.= ..+-..+++++|+.++.+++.
T Consensus 177 ~~~a~~~l--------~~~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~ 228 (408)
T TIGR02335 177 LDAGLSLL--------TNERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ 228 (408)
T ss_pred HHHHHHHH--------hccCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 45566666 2356799876 4788888853 466677999999999999763
No 29
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=52.57 E-value=35 Score=26.46 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=36.0
Q ss_pred CceeEEecCchhhhhhhhhcce-EeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 3 LKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 3 lkaA~It~~~llkg~g~~~G~~-v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
||=|+|+..+.+.|| +.+|++ ++.++ ....++++++.| ++.+++-+||++
T Consensus 1 mkIaVIgD~dtv~GF-rLaGi~~~~~v~-------------~~ee~~~~l~~l-------~~~~d~gII~it 51 (100)
T PRK03957 1 MKIAVVGDRDTVTGF-RLAGLTEVYEVK-------------NPEEAKNAIKEL-------VENDEIGIIIIT 51 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCCceEEeC-------------CHHHHHHHHHHH-------hhCCCeEEEEEc
Confidence 688999999999998 689995 55442 224566777654 233778999987
No 30
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=50.94 E-value=17 Score=38.47 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc---chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEE
Q 027156 43 IDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQMAQPATEVGSRLHLS 119 (227)
Q Consensus 43 ~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g---~~~~~~~iE~iD~lvg~il~~~~~~~~~~~~~~~s 119 (227)
.++.++++.+-| +.+++|..+=|.=.-|..||-= ..++++-++++|++++++++.++. + .+.
T Consensus 191 Dn~v~~~if~~l--------~s~dwdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mde-----d--TlL 255 (895)
T KOG2126|consen 191 DNGVIEKIFKSL--------NSKDWDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDE-----D--TLL 255 (895)
T ss_pred chHHHHHhhhhh--------ccCchHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcc-----C--eeE
Confidence 567889999877 3478999999999899888742 788999999999999999998764 3 466
Q ss_pred EEEec-cccccccCC
Q 027156 120 VVLSY-GQVLEADNS 133 (227)
Q Consensus 120 ~V~~y-g~~~~~d~~ 133 (227)
+|+|- |.+...||-
T Consensus 256 vVmGDHGMt~nGdHG 270 (895)
T KOG2126|consen 256 VVMGDHGMTDNGDHG 270 (895)
T ss_pred EEecCCCCCCCCCCC
Confidence 67752 334444443
No 31
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=50.57 E-value=42 Score=26.40 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=38.9
Q ss_pred CCCceeEEecCchhhhhhhhhcce-EeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 1 MGLKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 1 mglkaA~It~~~llkg~g~~~G~~-v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
|--|=|+|=+.+.+.|| +.+|++ |+.+. .+..++++++.| ..++|=+||++
T Consensus 1 m~~kIaVvGd~DtilGF-rlaGi~~v~~~~-------------~~e~~~~~~~~l--------~~~~~gII~iT 52 (104)
T PRK01189 1 MMSCITVIGERDVVLGF-RLLGIGDTIEAE-------------GKDLVKKFLEIF--------NNPKCKYIFVS 52 (104)
T ss_pred CCceEEEEcCHHHHHHH-HHcCCceEEEcC-------------CHHHHHHHHHHH--------hcCCeEEEEEE
Confidence 54577899999999999 689996 97662 234557888777 34778999998
No 32
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=45.25 E-value=97 Score=30.17 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHhccccCcccccCccc--EEEEeccCCCccCcccchh-hhhhhHHHHHHHHHHHHhcCC
Q 027156 40 GSPIDVVASELLKLLGLQRGKMEEVSQFD--LVLVHIGAGEKTNDDKGKA-VAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 40 ~~~~~~~a~~al~lLg~~e~~~~~~~~~D--lVfvHv~a~d~a~h~g~~~-~~~~iE~iD~lvg~il~~~~~ 108 (227)
.+......++||+.|. ++-+ |++|-=+..|.++|...-. ....+..+|+.|+.+++..+.
T Consensus 233 ~PsL~eMt~~Al~~L~---------~~~~GFfLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~ 295 (419)
T smart00098 233 EPSLAEMTEVAIRLLS---------KNERGFFLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKK 295 (419)
T ss_pred CCCHHHHHHHHHHHhh---------cCCCceEEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4568889999999993 1122 3334444568888987433 333788999999999988763
No 33
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.79 E-value=1.7e+02 Score=29.07 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=80.2
Q ss_pred cCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccchhhh
Q 027156 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVA 89 (227)
Q Consensus 10 ~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~~~~ 89 (227)
+.+.|+-+|..+|.+++... ...+--..|+++|+.. +...||+|+|.. ||-...
T Consensus 143 A~eQL~~La~q~~v~~f~~~---------~~~~Pv~Iak~al~~a--------k~~~~DvvIvDT-----AGRl~i---- 196 (451)
T COG0541 143 AIEQLKQLAEQVGVPFFGSG---------TEKDPVEIAKAALEKA--------KEEGYDVVIVDT-----AGRLHI---- 196 (451)
T ss_pred HHHHHHHHHHHcCCceecCC---------CCCCHHHHHHHHHHHH--------HHcCCCEEEEeC-----CCcccc----
Confidence 45678999999999997651 1123556899999877 346789999873 333211
Q ss_pred hhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEeeCCCCCCC--
Q 027156 90 HDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRND-- 167 (227)
Q Consensus 90 ~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k~~~~~~~-- 167 (227)
+=+-+|++.. |-+.++| +..++++=-.-|+...+ +-..+++.= .+|-+. .|.-+|..|-.
T Consensus 197 -de~Lm~El~~-Ik~~~~P-----~E~llVvDam~GQdA~~------~A~aF~e~l-~itGvI----lTKlDGdaRGGaA 258 (451)
T COG0541 197 -DEELMDELKE-IKEVINP-----DETLLVVDAMIGQDAVN------TAKAFNEAL-GITGVI----LTKLDGDARGGAA 258 (451)
T ss_pred -cHHHHHHHHH-HHhhcCC-----CeEEEEEecccchHHHH------HHHHHhhhc-CCceEE----EEcccCCCcchHH
Confidence 2234555433 4455666 33344442222333322 111111111 122221 24433333321
Q ss_pred --cC--CCccEEEEEccccceecCCCccCChHHHhhc
Q 027156 168 --VR--HHCPMLISQWQYAVTRKDMAETFSFKDFKEH 200 (227)
Q Consensus 168 --~r--~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~ 200 (227)
.+ -.+|+-+++. +-+.|+.+.|+-+-|+.+
T Consensus 259 LS~~~~tg~PIkFiGt---GEki~dLE~F~P~R~asR 292 (451)
T COG0541 259 LSARAITGKPIKFIGT---GEKIDDLEPFHPDRFASR 292 (451)
T ss_pred HhhHHHHCCCeEEEec---CCCcccCCCcChHHHHHH
Confidence 11 2679999777 558899999999888875
No 34
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=38.24 E-value=1.1e+02 Score=29.82 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=33.8
Q ss_pred cCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEecc
Q 027156 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (227)
Q Consensus 10 ~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~ 75 (227)
++..|+..|+.+|+.+.-+. .-.-..+++..| .++|+|+|...
T Consensus 248 A~EQLk~Ya~im~vp~~vv~-------------~~~el~~ai~~l----------~~~d~ILVDTa 290 (407)
T COG1419 248 AVEQLKTYADIMGVPLEVVY-------------SPKELAEAIEAL----------RDCDVILVDTA 290 (407)
T ss_pred HHHHHHHHHHHhCCceEEec-------------CHHHHHHHHHHh----------hcCCEEEEeCC
Confidence 67889999999999997761 233456777788 89999999843
No 35
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=38.04 E-value=1.3e+02 Score=30.08 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeccC--CCccCcccchhhhh-hhHHHHHHHHHHHHhcCCC
Q 027156 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKGKAVAH-DLEYINALVRVILQMAQPA 109 (227)
Q Consensus 40 ~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a--~d~a~h~g~~~~~~-~iE~iD~lvg~il~~~~~~ 109 (227)
.++.....++||++|. ++-+=-||=||. .|.++|+..-.... ..+.+|+.|+..++.++..
T Consensus 279 ~PsLaeMt~kAi~~L~---------kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~ 342 (482)
T COG1785 279 EPSLAEMTEKAIDLLS---------KNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKD 342 (482)
T ss_pred CCcHHHHHHHHHHHhc---------cCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677889999999994 444555566665 58888987444443 8889999999999988763
No 36
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.54 E-value=3.5e+02 Score=26.02 Aligned_cols=46 Identities=9% Similarity=-0.119 Sum_probs=28.7
Q ss_pred CccEEEEEccccceec-CCCccCChHHHhhcCCccceeHH--hHHHHHHHHhc
Q 027156 171 HCPMLISQWQYAVTRK-DMAETFSFKDFKEHGGYLTIPAD--RFLHEVAFKLW 220 (227)
Q Consensus 171 pvP~li~~~~~~~tR~-D~v~~Fse~e~~k~Gg~g~I~~~--~~m~evafkL~ 220 (227)
..|+.....++ |. |+.+.|+-+.|.+. =+|-=..+ .|++.+-.|-|
T Consensus 339 ~~Pi~yit~Gq---~vPeDl~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~ 387 (388)
T PRK12723 339 RKEVSYVTDGQ---IVPHNISIAEPLTFIKK-INGYRISDDAEFIRKLKSKSY 387 (388)
T ss_pred CCCEEEEeCCC---CChhhhhhCCHHHHHHH-hcCCCccchHHHHHHhccccC
Confidence 45877755643 54 99999999998886 33322233 45555544444
No 37
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.95 E-value=1.4e+02 Score=28.45 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=74.3
Q ss_pred CchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccchhhhh
Q 027156 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAH 90 (227)
Q Consensus 11 ~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~~~~~ 90 (227)
...|+--|+.+|.+||.-+ . ++ |--+++--|++.- +...+|+|++.. ||- +-.|.+
T Consensus 183 iEQL~~w~er~gv~vI~~~--~---G~----DpAaVafDAi~~A--------kar~~DvvliDT-----AGR--Lhnk~n 238 (340)
T COG0552 183 IEQLEVWGERLGVPVISGK--E---GA----DPAAVAFDAIQAA--------KARGIDVVLIDT-----AGR--LHNKKN 238 (340)
T ss_pred HHHHHHHHHHhCCeEEccC--C---CC----CcHHHHHHHHHHH--------HHcCCCEEEEeC-----ccc--ccCchh
Confidence 4567888999999999863 1 22 2445676677655 448899999873 333 444555
Q ss_pred hhHHHHH---HHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEe-----eCC
Q 027156 91 DLEYINA---LVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTM-----KGE 162 (227)
Q Consensus 91 ~iE~iD~---lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~-----k~~ 162 (227)
-++.|-+ ++++....++ .+.++.+=-.-|+-.-+ |..+..... ..+-+. .|. |+|
T Consensus 239 LM~EL~KI~rV~~k~~~~ap------~e~llvlDAttGqnal~---QAk~F~eav----~l~GiI----lTKlDgtAKGG 301 (340)
T COG0552 239 LMDELKKIVRVIKKDDPDAP------HEILLVLDATTGQNALS---QAKIFNEAV----GLDGII----LTKLDGTAKGG 301 (340)
T ss_pred HHHHHHHHHHHhccccCCCC------ceEEEEEEcccChhHHH---HHHHHHHhc----CCceEE----EEecccCCCcc
Confidence 4444444 4443332221 22222210011211110 111111000 011111 133 333
Q ss_pred CCCCCcC--CCccEEEEEccccceecCCCccCChHHHhh
Q 027156 163 TPRNDVR--HHCPMLISQWQYAVTRKDMAETFSFKDFKE 199 (227)
Q Consensus 163 ~~~~~~r--~pvP~li~~~~~~~tR~D~v~~Fse~e~~k 199 (227)
.... +. -..|+.+.+++. +-|+...|+.++|..
T Consensus 302 ~il~-I~~~l~~PI~fiGvGE---~~~DL~~Fd~~~fv~ 336 (340)
T COG0552 302 IILS-IAYELGIPIKFIGVGE---GYDDLRPFDAEWFVD 336 (340)
T ss_pred eeee-HHHHhCCCEEEEeCCC---ChhhccccCHHHHHH
Confidence 3221 12 277999988854 789999999999876
No 38
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=32.26 E-value=79 Score=30.09 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=47.7
Q ss_pred hhhhhcceEeecCCcccccC------------CCCCCChhHHHHHHHHHhccccCcccccCcccE-EEEeccCCCccCcc
Q 027156 17 FGDKLGFATLQLNELIETSD------------SLSGSPIDVVASELLKLLGLQRGKMEEVSQFDL-VLVHIGAGEKTNDD 83 (227)
Q Consensus 17 ~g~~~G~~v~~~~g~tg~~d------------t~~~~~~~~~a~~al~lLg~~e~~~~~~~~~Dl-VfvHv~a~d~a~h~ 83 (227)
.|+.+|||.+++-|++||+= ..++.++++-++-+++.+. .|.+.-.-|+ |++-+.+.|- .+.
T Consensus 157 rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~----aVr~~vg~~~~vg~Rls~~d~-~~~ 231 (363)
T COG1902 157 RAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVD----AVREAVGADFPVGVRLSPDDF-FDG 231 (363)
T ss_pred HHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHH----HHHHHhCCCceEEEEECcccc-CCC
Confidence 47789999999999999741 1233446776666666551 2333345577 9999998875 232
Q ss_pred cchhhhhhhHHHHHHHHHH
Q 027156 84 KGKAVAHDLEYINALVRVI 102 (227)
Q Consensus 84 g~~~~~~~iE~iD~lvg~i 102 (227)
+ -..+|..-.++..+
T Consensus 232 ~----g~~~~e~~~la~~L 246 (363)
T COG1902 232 G----GLTIEEAVELAKAL 246 (363)
T ss_pred C----CCCHHHHHHHHHHH
Confidence 1 22344444455545
No 39
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.86 E-value=4.2e+02 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=19.9
Q ss_pred CccEEEEEccccceecCCCccCChHHHhhc
Q 027156 171 HCPMLISQWQYAVTRKDMAETFSFKDFKEH 200 (227)
Q Consensus 171 pvP~li~~~~~~~tR~D~v~~Fse~e~~k~ 200 (227)
..|+.+...+. +.|+.+.|+-+.++.+
T Consensus 266 ~~PI~fig~Ge---~v~Dle~f~p~~~~~r 292 (429)
T TIGR01425 266 KSPIIFIGTGE---HIDDFEIFKTQPFISK 292 (429)
T ss_pred CCCeEEEcCCC---ChhhcCcCChHHHHHH
Confidence 45888866644 6688999998877553
No 40
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.19 E-value=76 Score=25.12 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=31.9
Q ss_pred ecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCC
Q 027156 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (227)
Q Consensus 9 t~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~ 77 (227)
+|...++...+..|+++.... .... +.+...+++.+++ +++|+|+.- ++.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~----~v~D----d~~~i~~~i~~~~----------~~~Dlvitt-GG~ 68 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG----VVPD----DADSIRAALIEAS----------READLVLTT-GGT 68 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee----ecCC----CHHHHHHHHHHHH----------hcCCEEEEC-CCC
Confidence 344577888888999886552 2222 2566666666666 568999665 444
No 41
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.03 E-value=88 Score=28.20 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=50.4
Q ss_pred eEEecCchhhhhhhhhcceEeecCCccc-ccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIE-TSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK 84 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg-~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g 84 (227)
-+||....+..|++.+|-+.++|.-+.. +.|. ..|+-+.+.+. .| ++-|+||.+ ++.
T Consensus 19 ~Vvts~~pl~~~v~~I~Gd~v~V~~Lip~g~dP---H~ye~~p~d~~-~l----------~~Adlvv~~-G~~------- 76 (287)
T cd01137 19 KVVATFSILADIARNIAGDRVNVTSIVPPGADP---HEYEPTPSDIK-KL----------SKADLILYN-GLN------- 76 (287)
T ss_pred eEEEEChHHHHHHHHHcCCeeEEEEecCCCCCc---cCCCCCHHHHH-HH----------HhCCEEEEc-CCC-------
Confidence 3788888889999999999999988863 3333 47898888877 56 666999766 322
Q ss_pred chhhhhhhHHHHHHHHHH
Q 027156 85 GKAVAHDLEYINALVRVI 102 (227)
Q Consensus 85 ~~~~~~~iE~iD~lvg~i 102 (227)
+| .|+++++...
T Consensus 77 ~E------~wl~~~~~~~ 88 (287)
T cd01137 77 LE------PWLERLVKNA 88 (287)
T ss_pred cH------HHHHHHHHhc
Confidence 22 2777777644
No 42
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=30.41 E-value=1.4e+02 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=21.9
Q ss_pred CcccEEEEeccCCCccCcccchhhhhhhHHHHHHHHHHHHhcC
Q 027156 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQ 107 (227)
Q Consensus 65 ~~~DlVfvHv~a~d~a~h~g~~~~~~~iE~iD~lvg~il~~~~ 107 (227)
.++||+ +++.++ +++.++.++...+...+
T Consensus 33 G~~d~~-~~v~~~-------------d~~~l~~~i~~~l~~~~ 61 (74)
T PF01037_consen 33 GEYDLI-LKVRAR-------------DMEELEEFIREKLRSIP 61 (74)
T ss_dssp SSSSEE-EEEEES-------------SHHHHHHHHHHTHHTST
T ss_pred CCCCEE-EEEEEC-------------CHHHHHHHHHHHhhcCC
Confidence 578888 888877 48999999888555543
No 43
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=29.96 E-value=3.4e+02 Score=27.42 Aligned_cols=19 Identities=5% Similarity=0.392 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHhcCC
Q 027156 90 HDLEYINALVRVILQMAQP 108 (227)
Q Consensus 90 ~~iE~iD~lvg~il~~~~~ 108 (227)
+.|.+.|..|+.+++.++.
T Consensus 436 nsI~ytD~~lg~ii~~Lk~ 454 (558)
T PRK11560 436 NSVLYVDHFISSVIDQLRD 454 (558)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4789999999999998865
No 44
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=29.52 E-value=13 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=19.9
Q ss_pred CcccEEEEeccCCCccCcccchhhhhhhHHHHH
Q 027156 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINA 97 (227)
Q Consensus 65 ~~~DlVfvHv~a~d~a~h~g~~~~~~~iE~iD~ 97 (227)
..+|+|+|+.-.=+++-....-.-..+||+||-
T Consensus 90 ~~idlVvvNlYpF~~~~~~~~~~~~~~iEnIDI 122 (187)
T cd01421 90 EPIDLVVVNLYPFEETVAKGNVTLEEAIENIDI 122 (187)
T ss_pred CCeeEEEEcccChHHHhccCCCCHHHHHHhccC
Confidence 578999999875433211101112458999995
No 45
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.32 E-value=99 Score=27.54 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=41.1
Q ss_pred EEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 7 LITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 7 ~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
+||....+..|.+.+|-|.++|.-+.. .+.+ -..|+-+.+.+. .| ++=|+||.+
T Consensus 6 Vv~s~~pl~~lv~~I~gd~v~V~~l~~-~g~d-PH~y~~~p~d~~-~l----------~~Adliv~~ 59 (282)
T cd01017 6 VVTTFYPLYEFTKAIGGDKADVKLIIP-AGTE-PHDFEPSPKDIA-RI----------ADADVFVYN 59 (282)
T ss_pred EEEEehHHHHHHHHhcCCceEEEEecC-CCCC-CcCCCCCHHHHH-HH----------HhCCEEEEc
Confidence 677777779999999999999888866 2221 357898888877 56 566999655
No 46
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.14 E-value=1.2e+02 Score=27.70 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=35.4
Q ss_pred eeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 5 AALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 5 aA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
.++|||.+-++++|...|..++.++--. .+..+++....++|+. ...|++++-
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~~~~-----~~~~~~~~~~~~~l~~-----------~~~Dlivla 172 (286)
T PRK13011 120 VGVVSNHPDLEPLAAWHGIPFHHFPITP-----DTKPQQEAQVLDVVEE-----------SGAELVVLA 172 (286)
T ss_pred EEEEECCccHHHHHHHhCCCEEEeCCCc-----CchhhhHHHHHHHHHH-----------hCcCEEEEe
Confidence 4678999889999999999998886311 1112344444444543 357999776
No 47
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=28.71 E-value=45 Score=31.70 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=38.2
Q ss_pred cCcccEEEEeccCCCccCccc---chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 64 VSQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 64 ~~~~DlVfvHv~a~d~a~h~g---~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
..++|++++|+...|.++|.= .++....++.+|.+++.+++..+.
T Consensus 215 ~~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~ 262 (450)
T COG1524 215 RADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKK 262 (450)
T ss_pred ccCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHh
Confidence 358999999999999999864 567777999999999999877654
No 48
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.65 E-value=1.4e+02 Score=27.34 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=36.8
Q ss_pred eeEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 5 AALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 5 aA~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
.++|||.+.++++|+..|..++.++--. .+...++....++|+.+ +.|++++-
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~~~~-----~~~~~~~~~~~~~l~~~-----------~~Dlivla 172 (286)
T PRK06027 120 AAVISNHDDLRSLVERFGIPFHHVPVTK-----ETKAEAEARLLELIDEY-----------QPDLVVLA 172 (286)
T ss_pred EEEEEcChhHHHHHHHhCCCEEEeccCc-----cccchhHHHHHHHHHHh-----------CCCEEEEe
Confidence 4689999999999999999999875421 11123555555555433 56999776
No 49
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=28.11 E-value=2.1e+02 Score=28.56 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 027156 91 DLEYINALVRVILQMAQPA 109 (227)
Q Consensus 91 ~iE~iD~lvg~il~~~~~~ 109 (227)
.|.+.|..++.+++.++..
T Consensus 409 sI~ytD~~l~~ii~~Lk~~ 427 (522)
T PRK09598 409 TIFYNDYLLDKIISMLKNL 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7889999999999888653
No 50
>PRK10649 hypothetical protein; Provisional
Probab=27.64 E-value=2.6e+02 Score=28.19 Aligned_cols=102 Identities=10% Similarity=0.090 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCCcceeecccccCCCCcCccCCceeEeeC-CCCCCCc
Q 027156 90 HDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKG-ETPRNDV 168 (227)
Q Consensus 90 ~~iE~iD~lvg~il~~~~~~~~~~~~~~~s~V~~yg~~~~~d~~~~~vl~~~~~~ds~~tpl~P~QSy~~k~-~~~~~~~ 168 (227)
+.|.+.|.+|+.+++.++... .+ .+++.+ + ||-+- +. +.+.|. +--++ +. ..+.
T Consensus 431 nsI~y~D~~l~~ii~~Lk~~~---~n-t~iiy~--S-----DHGe~-~~----~~~~~~--------~lG~~~~~-~~~~ 485 (577)
T PRK10649 431 NANLYNDHVVASLIKDFKATD---PN-GFLVYF--S-----DHGEE-VY----DTPPHK--------TQGRNEDN-PTRH 485 (577)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CC-eEEEEE--C-----CCCcc-cc----cCCccc--------ccCCCCCC-CCcc
Confidence 378899999999999987631 23 233433 2 66421 10 011111 00011 11 1123
Q ss_pred CCCccEEEEEccccceecCCCccCChHHHhhcCCccceeHHhHHHHHHHHhcCCcC
Q 027156 169 RHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKAPK 224 (227)
Q Consensus 169 r~pvP~li~~~~~~~tR~D~v~~Fse~e~~k~Gg~g~I~~~~~m~evafkL~kapK 224 (227)
.-.+||+| |.+...++-.-.++ ... -.-.+-.++++|-++..+|-..+
T Consensus 486 ~~~VP~ii--~~s~~~~~~~~~~~--~~~----~~~~~s~~Dl~~Tll~laGi~~~ 533 (577)
T PRK10649 486 MYTIPFLL--WTSEKWQAAHPRDF--SQD----VDRKYSLAELIHTWSDLAGLSYD 533 (577)
T ss_pred cceecEEE--EECHHHHhhCchhh--hhh----hcCCeeHHhHHHHHHHHcCCCCC
Confidence 45789999 64323221110011 110 12257789999999998876533
No 51
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=26.53 E-value=52 Score=26.23 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=33.0
Q ss_pred ecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 9 t~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
+|...|+...+..|++|.... .... +.+...+++.+++ ++.|+|+.-
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~----~v~D----d~~~i~~~l~~~~----------~~~D~Vitt 63 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG----IVPD----DPDAIKEALRRAL----------DRADLVITT 63 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE----EEES----SHHHHHHHHHHHH----------HTTSEEEEE
T ss_pred hHHHHHHHHHHHcCCeeeEEE----EECC----CHHHHHHHHHhhh----------ccCCEEEEc
Confidence 355677888899999997652 2222 3777777777777 677999554
No 52
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=26.49 E-value=84 Score=24.57 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=38.5
Q ss_pred CchhhhhhhhhcceEeecCCcccccCCCCCCChhH-----HHHHHHHHhccccCcccccCcccEEEEeccCC
Q 027156 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDV-----VASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (227)
Q Consensus 11 ~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~-----~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~ 77 (227)
.+.+..|+..+|.-|++.+...|-++.+ .+.|-+ --..+-++| .+.|+| |.+++.
T Consensus 28 ~~~l~~lae~~~~Pv~~t~~~kg~i~~~-hp~~~G~~g~~~~~~~~~~l----------~~aDlv-l~iG~~ 87 (137)
T PF00205_consen 28 AEELRELAEKLGIPVATTPMGKGVIPED-HPLFLGYLGLFGSPAANEAL----------EQADLV-LAIGTR 87 (137)
T ss_dssp HHHHHHHHHHHTSEEEEEGGGTTSSTTT-STTEEEESCGGSCHHHHHHH----------HHSSEE-EEESSS
T ss_pred HHHHHHHHHHHCCCEEecCccccccCCC-CchhcccCCccCCHHHHHHh----------cCCCEE-EEECCC
Confidence 4567899999999999999999988875 233321 123333444 567999 888854
No 53
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.65 E-value=1.3e+02 Score=26.71 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=41.0
Q ss_pred EEecCchhhhhhhhhcceEeecCCccc--ccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 7 LITTNSRLKSFGDKLGFATLQLNELIE--TSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 7 ~It~~~llkg~g~~~G~~v~~~~g~tg--~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
+||...-+..|.+.+|-+.++|.-+.. +.|. ..|+-+.+.+. .| ++=|+||.+
T Consensus 5 Vvtt~~pl~~~v~~I~gd~v~V~~l~p~~g~dp---H~y~~~p~d~~-~l----------~~ADliv~~ 59 (264)
T cd01020 5 VVASTNFWGSVAEAVGGDHVEVTSIITNPDVDP---HDFEPTPTDAA-KV----------STADIVVYN 59 (264)
T ss_pred EEEEccHHHHHHHHHcCCceEEEEecCCCCCCc---ccCCCCHHHHH-HH----------hhCCEEEEe
Confidence 677778889999999999999988866 3433 47888888766 56 666999554
No 54
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.31 E-value=1.2e+02 Score=27.92 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.9
Q ss_pred eEEecCchhhhhhhhhcceEeecCCcccc-cCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCccc
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIET-SDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK 84 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg~-~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g 84 (227)
-+||...-+..|++.+|-++++|.-+... .|. ..|+-+.+.+. .| ++=|+||.. ++.
T Consensus 26 ~VvaS~~pl~~~v~~I~gd~~~V~~Lvp~g~dP---H~yep~p~d~~-~l----------~~ADlvv~n-G~~------- 83 (311)
T PRK09545 26 AVVTSIKPLGFIASAIADGVTETEVLLPDGASP---HDYSLRPSDVK-RL----------QSADLVVWV-GPE------- 83 (311)
T ss_pred cEEEEcHHHHHHHHHHcCCCceEEeccCCCCCC---cCCCCCHHHHH-HH----------hcCCEEEEe-CCC-------
Confidence 46777888899999999888888777543 333 47999998887 55 556999665 433
Q ss_pred chhhhhhhHHHHHHHHHH
Q 027156 85 GKAVAHDLEYINALVRVI 102 (227)
Q Consensus 85 ~~~~~~~iE~iD~lvg~i 102 (227)
+| .|+++++...
T Consensus 84 lE------~wl~k~~~~~ 95 (311)
T PRK09545 84 ME------AFLEKPVSKL 95 (311)
T ss_pred hH------hHHHHHHHhc
Confidence 21 3777777654
No 55
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.82 E-value=1.2e+02 Score=24.51 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=28.9
Q ss_pred ecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 9 t~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
+|...|...-+..|++|.... .... +.+...+.+.+++ .+.|+|++-
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~----~v~D----d~~~i~~~l~~~~----------~~~DliItt 73 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLG----IVPD----DPEEIREILRKAV----------DEADVVLTT 73 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEe----ecCC----CHHHHHHHHHHHH----------hCCCEEEEC
Confidence 344567777888899887651 2222 2444555544455 578999765
No 56
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.61 E-value=1.7e+02 Score=26.21 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=50.3
Q ss_pred eEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccc
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 85 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~ 85 (227)
-+||....+..|.+.+|-+.++|.-+... +.+ ...|+-+.+.+. .| ++-|++|.+ ++. +
T Consensus 3 ~Vvts~~pl~~iv~~I~gd~v~V~~li~~-g~d-pH~yep~p~d~~-~l----------~~Adliv~~-G~~-------~ 61 (276)
T cd01016 3 NVVTTTGMIADAVENIGGDHVEVTGLMGP-GVD-PHLYKATAGDVE-KL----------QNADVVFYN-GLH-------L 61 (276)
T ss_pred EEEEeChHHHHHHHHHcCCeEEEEEeeCC-CCC-cccCCCCHHHHH-HH----------HhCCEEEEc-CcC-------h
Confidence 36777778899999999999999888642 221 357999999888 56 666999654 332 2
Q ss_pred hhhhhhhHHHHHHHHHH
Q 027156 86 KAVAHDLEYINALVRVI 102 (227)
Q Consensus 86 ~~~~~~iE~iD~lvg~i 102 (227)
| .|+++++...
T Consensus 62 E------~w~~k~~~~~ 72 (276)
T cd01016 62 E------GKMSDVLSKL 72 (276)
T ss_pred H------HHHHHHHHHh
Confidence 1 4888877654
No 57
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=24.60 E-value=1e+02 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=38.7
Q ss_pred hhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccchhhhhhhH
Q 027156 14 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLE 93 (227)
Q Consensus 14 lkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~~~~~~iE 93 (227)
++-=++.+|.+.+++ -.+.|-++|.-+ +++|-|||- . . .
T Consensus 74 ~~~N~~~fg~~n~~v--------------v~g~Ap~~L~~~----------~~~daiFIG---G-------------g-~ 112 (187)
T COG2242 74 IERNAARFGVDNLEV--------------VEGDAPEALPDL----------PSPDAIFIG---G-------------G-G 112 (187)
T ss_pred HHHHHHHhCCCcEEE--------------EeccchHhhcCC----------CCCCEEEEC---C-------------C-C
Confidence 333445566665555 556666666544 578888887 2 1 3
Q ss_pred HHHHHHHHHHHhcCCCcccCcceEEEEEE
Q 027156 94 YINALVRVILQMAQPATEVGSRLHLSVVL 122 (227)
Q Consensus 94 ~iD~lvg~il~~~~~~~~~~~~~~~s~V~ 122 (227)
.++.++....+.+.++ .+++..+|+
T Consensus 113 ~i~~ile~~~~~l~~g----grlV~nait 137 (187)
T COG2242 113 NIEEILEAAWERLKPG----GRLVANAIT 137 (187)
T ss_pred CHHHHHHHHHHHcCcC----CeEEEEeec
Confidence 5666777777776665 555555544
No 58
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=24.37 E-value=1.2e+02 Score=22.64 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=41.5
Q ss_pred eEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccc
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 85 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~ 85 (227)
|+|.+.+.+.|| +.+|++++.++ + ....+.++++-| ++.+++-+|+|. .
T Consensus 2 avIGd~~~v~gF-rLaGv~~~~~~-------~-----~~ee~~~~l~~l-------~~~~~~gIIii~---e-------- 50 (95)
T PF01990_consen 2 AVIGDRDTVLGF-RLAGVEGVYVN-------T-----DPEEAEEALKEL-------LKDEDVGIIIIT---E-------- 50 (95)
T ss_dssp EEEE-HHHHHHH-HHTTSEEEEES-------H-----SHHHHHHHHHHH-------HHHTTEEEEEEE---H--------
T ss_pred EEEeCHHHHHHH-HHcCCCCccCC-------C-----CHHHHHHHHHHH-------hcCCCccEEEee---H--------
Confidence 678888888888 68999998875 1 233444444433 133678888887 2
Q ss_pred hhhhhhhHHHHHHHHHHHHh
Q 027156 86 KAVAHDLEYINALVRVILQM 105 (227)
Q Consensus 86 ~~~~~~iE~iD~lvg~il~~ 105 (227)
...+.+...+..++..
T Consensus 51 ----~~~~~~~~~l~~~~~~ 66 (95)
T PF01990_consen 51 ----DLAEKIRDELDEYREE 66 (95)
T ss_dssp ----HHHTTHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 2556667766666433
No 59
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.06 E-value=4.6e+02 Score=26.02 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCceeEEec-------CchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEec
Q 027156 2 GLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (227)
Q Consensus 2 glkaA~It~-------~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv 74 (227)
|.+.++|+. .+.++..+..+|+.++... + ... ...+++.+. +..++|+|||..
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-------d-----~~~-L~~aL~~lk-------~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-------D-----EAA-MTRALTYFK-------EEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-------C-----HHH-HHHHHHHHH-------hccCCCEEEEeC
Confidence 344555554 3466888888898886542 1 222 335665551 012589999985
Q ss_pred cCC
Q 027156 75 GAG 77 (227)
Q Consensus 75 ~a~ 77 (227)
.+-
T Consensus 329 aGR 331 (436)
T PRK11889 329 AGK 331 (436)
T ss_pred ccc
Confidence 444
No 60
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.05 E-value=1.9e+02 Score=24.44 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=40.9
Q ss_pred eEEecCchhhhhhhhhcceEeecCCcccc-cCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIET-SDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg~-~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
-+||....+..|++.+|-+..+|.-+... .|. ..|+-+.+.+. .| ++-|++|.+
T Consensus 4 ~Vvts~~pl~~iv~~I~gd~~~V~~l~p~g~dp---H~ye~tp~d~~-~l----------~~Adliv~~ 58 (203)
T cd01145 4 NVVVTFPDLKDLVREVAGDAVIVSALTPPGVDP---HQYQLKPSDIA-KM----------RKADLVVTS 58 (203)
T ss_pred eEEEEChHHHHHHHHHcCCcEEEEEecCCCCCc---ccccCCHHHHH-HH----------hcCCEEEEc
Confidence 37788888899999999998888777542 333 46888888876 56 566999766
No 61
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.90 E-value=2.2e+02 Score=30.04 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=21.0
Q ss_pred CccEEEEEccccceec-CCCccCChHHHhhc
Q 027156 171 HCPMLISQWQYAVTRK-DMAETFSFKDFKEH 200 (227)
Q Consensus 171 pvP~li~~~~~~~tR~-D~v~~Fse~e~~k~ 200 (227)
..|+.++..+ .+. |+.+.|+-++|.+.
T Consensus 350 ~lPI~yit~G---Q~VPdDL~~a~~~~lv~~ 377 (767)
T PRK14723 350 RLPVHYVSTG---QKVPEHLELAQADELVDR 377 (767)
T ss_pred CCCeEEEecC---CCChhhcccCCHHHHHHH
Confidence 5688886674 365 99999999888775
No 62
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=22.10 E-value=1.6e+02 Score=30.91 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.6
Q ss_pred CcccEEEEeccCCCccCccc---chhhhhhhHHHHHHHHHHHHhcCC
Q 027156 65 SQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQMAQP 108 (227)
Q Consensus 65 ~~~DlVfvHv~a~d~a~h~g---~~~~~~~iE~iD~lvg~il~~~~~ 108 (227)
++.|+.++|+-+.|--||-+ ..-....+..+|+++++|.+.++.
T Consensus 190 ~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~ 236 (760)
T KOG2125|consen 190 SDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLME 236 (760)
T ss_pred cchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999888865 223333788999999999875543
No 63
>PRK14974 cell division protein FtsY; Provisional
Probab=21.91 E-value=4.3e+02 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=20.6
Q ss_pred CccEEEEEccccceecCCCccCChHHHhhc
Q 027156 171 HCPMLISQWQYAVTRKDMAETFSFKDFKEH 200 (227)
Q Consensus 171 pvP~li~~~~~~~tR~D~v~~Fse~e~~k~ 200 (227)
..|+.....+ .+.|+.+.|+-+.|.++
T Consensus 306 ~~Pi~~i~~G---q~v~Dl~~~~~~~~v~~ 332 (336)
T PRK14974 306 GKPILFLGVG---QGYDDLIPFDPDWFVDK 332 (336)
T ss_pred CcCEEEEeCC---CChhhcccCCHHHHHHH
Confidence 5688887664 46699999998887764
No 64
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.53 E-value=1.5e+02 Score=26.72 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=41.4
Q ss_pred eEEecCchhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 027156 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (227)
Q Consensus 6 A~It~~~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvH 73 (227)
-+||....+..|.+.+|-+.++|.-++. .+.+ ...|+-+.+-+. .| ++=|+||.+
T Consensus 5 ~Vv~t~~pl~~lv~~I~Gd~v~V~~li~-~g~d-pH~ye~~p~d~~-~l----------~~Adliv~~ 59 (286)
T cd01019 5 SVLTSIKPLGFIAAAIMGGVGEVEVLVP-PGAS-PHDYELRPSDAR-KL----------QEADLVVWI 59 (286)
T ss_pred eEEEecccHHHHHHHHcCCCcceEEecC-CCCC-ccCCCCCHHHHH-HH----------HhCCEEEEe
Confidence 3677777789999999999888888865 2222 357999998887 56 566999555
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=21.32 E-value=2e+02 Score=26.26 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred eeEEecCchhhhhhhhhcceEeecCC
Q 027156 5 AALITTNSRLKSFGDKLGFATLQLNE 30 (227)
Q Consensus 5 aA~It~~~llkg~g~~~G~~v~~~~g 30 (227)
.++|||.+.+.++|+..|..++.++-
T Consensus 115 ~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 115 ALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred EEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 46899999999999999999988873
No 66
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=21.15 E-value=1.6e+02 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=26.7
Q ss_pred eeEEecCchhhhhhhhhcceEeecCCccccc
Q 027156 5 AALITTNSRLKSFGDKLGFATLQLNELIETS 35 (227)
Q Consensus 5 aA~It~~~llkg~g~~~G~~v~~~~g~tg~~ 35 (227)
|.+|-++.||.|||.+-||+=+-+=|-|-++
T Consensus 164 GgIVGasGLllg~g~l~gm~gaCLMGeT~GY 194 (258)
T COG2047 164 GGIVGASGLLLGFGELRGMDGACLMGETPGY 194 (258)
T ss_pred CceechhhhhhhhhhhcCCCceeeccCCCcc
Confidence 5789999999999999999988887776544
No 67
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.87 E-value=4.8e+02 Score=21.45 Aligned_cols=70 Identities=10% Similarity=0.256 Sum_probs=41.4
Q ss_pred chhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccchhhhhh
Q 027156 12 SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD 91 (227)
Q Consensus 12 ~llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~~~~~~ 91 (227)
+.+..+.+..|+.++.-.=-++ |.. ..+.+..++++++.+ ++=+.|.+|-.. .....
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~--D~~-~~~~~~i~~~~~~~~----------~~g~Iil~Hd~~----------~~~~t 166 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSR--DWK-NPGVESIVDRVVKNT----------KPGDIILLHASD----------SAKQT 166 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCC--ccC-CCCHHHHHHHHHhcC----------CCCCEEEEeCCC----------CcHhH
Confidence 4456678889999876431111 111 123456677777766 445899999421 12345
Q ss_pred hHHHHHHHHHHHH
Q 027156 92 LEYINALVRVILQ 104 (227)
Q Consensus 92 iE~iD~lvg~il~ 104 (227)
++.|..++..+.+
T Consensus 167 ~~~l~~~i~~l~~ 179 (191)
T TIGR02764 167 VKALPTIIKKLKE 179 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777643
No 68
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.63 E-value=5.2e+02 Score=22.26 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=39.3
Q ss_pred hhhhhhhhhcceEeecCCcccccCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeccCCCccCcccchhhhhhh
Q 027156 13 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDL 92 (227)
Q Consensus 13 llkg~g~~~G~~v~~~~g~tg~~dt~~~~~~~~~a~~al~lLg~~e~~~~~~~~~DlVfvHv~a~d~a~h~g~~~~~~~i 92 (227)
.+..+.+.+|+.++...--+.....+.....+..++.+++.+ .+=+.|++|-..+ ..+
T Consensus 143 ~~~~~l~~~Gy~~v~w~v~~~Dw~~~~~~~~~~~~~~v~~~~----------~~g~IiLlHd~~~------------~t~ 200 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSLAFKDWKVDEQPGWQYAYKQIMKKI----------HPGAILLLHAVSK------------DNA 200 (224)
T ss_pred HHHHHHHHcCCcEEeccccCcccCCCCCCCHHHHHHHHHhcC----------CCCcEEEEECCCC------------CHH
Confidence 356677888988864422222111111112334455666554 4458999995322 147
Q ss_pred HHHHHHHHHHHHh
Q 027156 93 EYINALVRVILQM 105 (227)
Q Consensus 93 E~iD~lvg~il~~ 105 (227)
|.|+.+|..+.++
T Consensus 201 ~aL~~ii~~lk~~ 213 (224)
T TIGR02884 201 EALDKIIKDLKEQ 213 (224)
T ss_pred HHHHHHHHHHHHC
Confidence 7888888877433
Done!