BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027157
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
          CR+C  E D    +  PC C G++ F H+ C+Q+W  +     CE+C  ++
Sbjct: 18 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79
          C +C EE    +  A CGC G ++  HR C+  W    +   C+IC
Sbjct: 9  CWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
          Protein 24
          Length = 74

 Score = 29.6 bits (65), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 34 CRVCQEEDFIHKME-APCGCKGTIQFAHRKCIQKWCNAKKKMICEICH 80
          C VC E DF  + E   C CK      HRKC+ KW   +K  +C +C+
Sbjct: 18 CAVCLE-DFKPRDELGICPCKHAF---HRKCLIKWLEVRK--VCPLCN 59


>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
 pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
 pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
 pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
 pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
 pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
          Length = 361

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 56  IQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTPGYRVPQ 96
           ++F   +  Q+ C+  K  IC    Q   P   TPG+R P+
Sbjct: 176 LKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPE 216


>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
 pdb|2Y0D|B Chain B, Bcec Mutation Y10k
 pdb|2Y0D|C Chain C, Bcec Mutation Y10k
 pdb|2Y0D|D Chain D, Bcec Mutation Y10k
          Length = 478

 Score = 28.1 bits (61), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 103 FVAYGGRPLAYSPIAQAEARRLL 125
            ++ G R  AY P+AQ EARR++
Sbjct: 357 LLSRGARIAAYDPVAQEEARRVI 379


>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
 pdb|2Y0C|B Chain B, Bcec Mutation Y10s
 pdb|2Y0C|C Chain C, Bcec Mutation Y10s
 pdb|2Y0C|D Chain D, Bcec Mutation Y10s
          Length = 478

 Score = 28.1 bits (61), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 103 FVAYGGRPLAYSPIAQAEARRLL 125
            ++ G R  AY P+AQ EARR++
Sbjct: 357 LLSRGARIAAYDPVAQEEARRVI 379


>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
 pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
 pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
 pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
          Length = 478

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 103 FVAYGGRPLAYSPIAQAEARRLL 125
            ++ G R  AY P+AQ EARR++
Sbjct: 357 LLSRGARIAAYDPVAQEEARRVI 379


>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
 pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
          Length = 265

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 167 MDIFINHHTQSEDDVKTKCYLALGLLIYLITFVLVSNKSF 206
           +D+FIN  +Q  + V  K   ALG   YL+  V + +K+F
Sbjct: 77  LDVFINALSQENEKVTIKALRALG---YLVKDVPMGSKTF 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,506,384
Number of Sequences: 62578
Number of extensions: 247427
Number of successful extensions: 570
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 11
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)