BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027157
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY----RPGYQT 89
CR+C E + +PCGC GT+ H+ C++KW ++ CE+CH ++ RP T
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 90 PGYRVPQP 97
+ P P
Sbjct: 124 EWLKDPGP 131
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY----RPGYQT 89
CR+C E + +PCGC GT+ H+ C++KW ++ CE+CH ++ RP T
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 90 PGYRVPQP 97
+ P P
Sbjct: 124 EWLKDPGP 131
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY----RPGYQT 89
CR+C E ++ +PC C GT+ H+ C++KW ++ CE+CH ++ RP T
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVT 123
Query: 90 PGYRVPQP 97
+ P P
Sbjct: 124 EWLKDPGP 131
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY----RPGYQT 89
CR+C E ++ +PC C GT+ H+ C++KW ++ CE+CH ++ RP T
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVT 123
Query: 90 PGYRVPQPSD 99
+ P P +
Sbjct: 124 EWLKDPGPRN 133
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 7 VKAESIMTLKIVDNGAGDGSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK 66
V A+ L V S N+R CR+C E + +PC C GT+ HR C++
Sbjct: 44 VSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEH 103
Query: 67 WCNAKKKMICEICH 80
W ++ CE+CH
Sbjct: 104 WLSSSNTSYCELCH 117
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 7 VKAESIMTLKIVDNGAGDGSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK 66
V A+ L V S N+R CR+C E + +PC C GT+ HR C++
Sbjct: 44 VSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEH 103
Query: 67 WCNAKKKMICEICH 80
W ++ CE+CH
Sbjct: 104 WLSSSNTSYCELCH 117
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 7 VKAESIMTLKIVDNGAGDGSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK 66
V A+ L V S N+R CR+C E + +PC C GT+ HR C++
Sbjct: 44 VSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEH 103
Query: 67 WCNAKKKMICEICH 80
W ++ CE+CH
Sbjct: 104 WLSSSNTSYCELCH 117
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 7 VKAESIMTLKIVDNGAGDGSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK 66
V A+ L V S N+R CR+C E + +PC C GT+ HR C++
Sbjct: 44 VSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEH 103
Query: 67 WCNAKKKMICEICH 80
W ++ CE+CH
Sbjct: 104 WLSSSNTSYCELCH 117
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY----RPGYQT 89
CR+C E + +PCGC GT+ H+ C++KW ++ CE+CH ++ RP T
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 90 PGYRVPQP 97
+ P P
Sbjct: 124 EWLKDPGP 131
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 29 NERSECRVCQEEDFIHKME---APCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY-- 83
++R CR+C E + E +PC C GT+ H+ C++KW ++ CE+CH ++
Sbjct: 59 SDRPICRICHEGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFTI 118
Query: 84 --RPGYQTPGYRVPQPSD 99
RP T R P P +
Sbjct: 119 ERRPRPLTEWLRDPGPRN 136
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICH 80
N+R CR+C E + +PC C GT+ HR C++ W ++ CE+CH
Sbjct: 64 NDRPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 115
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E + +PCGC GT+ H+ C+++W ++ CE+CH ++
Sbjct: 64 CRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 7 VKAESIMTLKIVDNGAGDGSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK 66
V A+ L V S N+ CR+C E + +PC C GT+ HR C++
Sbjct: 43 VSAKDGQLLSTVVRTLTTQSSFNDHPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEH 102
Query: 67 WCNAKKKMICEICH 80
W ++ CE+CH
Sbjct: 103 WLSSSNTSYCELCH 116
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 28 SNERSECRVCQEEDFIHK-MEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86
+ E CRVC+ E K + PC C G+I+F H++C+ +W +K CE+C +
Sbjct: 3 TAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA-- 60
Query: 87 YQTPGYRVPQPS 98
TP Y PS
Sbjct: 61 -FTPIYSPDMPS 71
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 28 SNERSECRVCQEEDFIHK-MEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86
+ E CRVC+ E K + PC C G+I+F H++C+ +W +K CE+C +
Sbjct: 3 TAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA-- 60
Query: 87 YQTPGYRVPQPS 98
TP Y PS
Sbjct: 61 -FTPIYSPDMPS 71
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 28 SNERSECRVCQEEDFIHK-MEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86
+ E CRVC+ E K + PC C G+I+F H++C+ +W +K CE+C +
Sbjct: 3 TAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA-- 60
Query: 87 YQTPGYRVPQPS 98
TP Y PS
Sbjct: 61 -FTPIYSPDMPS 71
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C GT++F H+ C+ +W + CE+C D+
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C GT++F H+ C+ +W + CE+C D+
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 34 CRVCQEE--DFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK--------KKMICEICHQ 81
CR+CQ + + PCGC G++QF H++C++KW K CE+C Q
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 34 CRVCQEE--DFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK--------KKMICEICHQ 81
CR+CQ + + PCGC G++QF H++C++KW K CE+C Q
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C G++ F H+ C+Q+W + CE+C ++
Sbjct: 76 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 126
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 34 CRVCQ-----EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CRVC+ + H PC C G+I++ H++C+ +W KK CE+C +
Sbjct: 8 CRVCRCEGAPDSPLFH----PCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKF 58
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C G++ F H+ C+Q+W + CE+C ++
Sbjct: 78 CRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEF 128
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 34 CRVCQ--EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK--------MICEICHQ 81
CR+CQ + + PC C G++Q+ H++C++KW AK CE+C +
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKE 610
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 34 CRVCQ--EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK--------MICEICHQ 81
CR+CQ + + PC C G++Q+ H++C++KW AK CE+C +
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKE 611
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C G++ F H+ C+Q+W + CE+C ++
Sbjct: 80 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84
CR+C + ++ +PC C G+++ H C+ KW + + CE+C+ Y+
Sbjct: 143 CRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQ 193
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 34 CRVCQ--EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK--------MICEICHQ 81
CR+CQ + + PC C G++Q+ H+ C++KW AK CE+C +
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 34 CRVCQ--EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK--------MICEICHQ 81
CR+CQ + + PC C G++Q+ H+ C++KW AK CE+C +
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C G++ F H+ C+Q+W + CE+C ++
Sbjct: 53 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF 103
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK------MICEICHQDYR 84
C VC ++ED + +PC CKG ++ H+ C+Q+W + K+K + C C +YR
Sbjct: 12 CWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTEYR 71
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRVCQ-EEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C E D + PC C G++ F H+ C+Q+W + CE+C ++
Sbjct: 53 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF 103
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 26 SVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85
S+ E +C +C++ + + + C C G +Q+ H +C++ W + + C+ C Y+
Sbjct: 124 SIDEEGKQCWICRDGESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYKV 182
Query: 86 GYQ------TPGYRVPQPSDPFAFVA 105
Q PGY D F F+A
Sbjct: 183 NRQLSLKRGLPGYW--DRDDRFVFIA 206
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84
+CR+C + ++ +PC C G+++ H+ C+ +W + + CE+C+ Y+
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84
+CR+C + ++ +PC C G+++ H+ C+ +W + + CE+C+ Y+
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79
C +C EE + A CGC G ++ HR C+ W + C+IC
Sbjct: 9 CWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQIC 53
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C + ++ +PC C G+++ H+ C+ KW + + CE+C+ Y
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SSM4 PE=1 SV=1
Length = 1319
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 15 LKIVDNGAGDGSVSNERS----ECRVCQ---EEDFIHKMEAPCGCKGTIQFAHRKCIQKW 67
L V N D + N+ + CR+C+ ED + + PC C+G+I++ H C+ +W
Sbjct: 16 LHKVANEETDTATFNDDAPSGATCRICRGEATED--NPLFHPCKCRGSIKYMHESCLLEW 73
Query: 68 CNAKKKMI--------CEICH 80
+K I C+ICH
Sbjct: 74 VASKNIDISKPGADVKCDICH 94
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5
PE=2 SV=1
Length = 283
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83
CR+C + ++ +PC C G+++ H+ C+ KW + + CE+C+ Y
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 211
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5
PE=2 SV=1
Length = 281
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 33 ECRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 16 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 34 CRVC---QEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDY 83
C VC E+D + PC C+G+ ++ H+ C+Q+W + K+ ++ C C+ +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79
C++C + ++ PC C G++++ H+ C+ KW + + CE+C
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 211
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79
C++C + ++ PC C G++++ H+ C+ KW + + CE+C
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 213
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79
C++C + ++ PC C G++++ H+ C+ KW + + CE+C
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 34 CRVCQEE---DFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84
C +C+EE + IH PC C G + H +C+ W + C++C YR
Sbjct: 15 CWICREEVGNEGIH----PCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYR 64
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3
PE=1 SV=1
Length = 201
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 44 HKMEAP----CGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTPGYR 93
H+ E P CGCKG+ +H+ C++ W ++ C +C Y ++T R
Sbjct: 12 HQPEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYSMKWKTKPLR 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,817,152
Number of Sequences: 539616
Number of extensions: 3248901
Number of successful extensions: 8039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7982
Number of HSP's gapped (non-prelim): 73
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)