Query 027157
Match_columns 227
No_of_seqs 241 out of 818
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02825 LAP/PHD finger-like p 99.7 6.1E-19 1.3E-23 148.8 3.4 64 26-91 3-66 (162)
2 smart00744 RINGv The RING-vari 99.7 3.9E-18 8.5E-23 118.0 2.5 48 33-80 1-49 (49)
3 PHA02862 5L protein; Provision 99.7 1.2E-17 2.6E-22 139.5 4.3 56 31-88 2-57 (156)
4 PF12428 DUF3675: Protein of u 99.7 2.1E-17 4.6E-22 133.5 5.6 91 85-192 1-96 (118)
5 PF12906 RINGv: RING-variant d 99.7 7.8E-18 1.7E-22 115.6 1.1 46 34-79 1-47 (47)
6 KOG1609 Protein involved in mR 99.6 9.5E-16 2.1E-20 135.0 3.9 67 26-92 73-142 (323)
7 COG5183 SSM4 Protein involved 99.6 2.5E-15 5.4E-20 151.0 5.0 67 28-94 9-78 (1175)
8 KOG3053 Uncharacterized conser 99.5 2.8E-14 6.1E-19 128.6 4.2 65 28-92 17-90 (293)
9 PF13639 zf-RING_2: Ring finge 97.7 7.6E-06 1.7E-10 54.2 0.4 42 32-80 1-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.2 0.00029 6.3E-09 66.5 3.9 49 32-86 230-280 (348)
11 PHA02929 N1R/p28-like protein; 97.2 0.00022 4.7E-09 64.1 2.8 51 29-86 172-229 (238)
12 cd00162 RING RING-finger (Real 97.2 0.00027 5.9E-09 44.5 2.1 44 33-82 1-44 (45)
13 COG5243 HRD1 HRD ubiquitin lig 96.9 0.0011 2.5E-08 63.6 4.9 55 27-88 283-349 (491)
14 PLN03208 E3 ubiquitin-protein 96.9 0.00074 1.6E-08 59.2 3.0 52 28-85 15-80 (193)
15 COG5540 RING-finger-containing 96.8 0.00087 1.9E-08 62.8 2.8 51 28-84 320-372 (374)
16 PF12678 zf-rbx1: RING-H2 zinc 96.7 0.00086 1.9E-08 49.5 1.6 43 31-80 19-73 (73)
17 PF00097 zf-C3HC4: Zinc finger 96.6 0.0011 2.3E-08 42.9 1.7 41 34-79 1-41 (41)
18 smart00184 RING Ring finger. E 96.6 0.0015 3.3E-08 39.5 2.1 39 34-79 1-39 (39)
19 PF13920 zf-C3HC4_3: Zinc fing 96.6 0.0011 2.3E-08 45.1 1.3 46 31-84 2-48 (50)
20 PF11793 FANCL_C: FANCL C-term 96.5 0.00082 1.8E-08 49.5 0.5 53 31-86 2-68 (70)
21 PF12861 zf-Apc11: Anaphase-pr 96.3 0.003 6.6E-08 49.0 2.4 52 31-86 21-84 (85)
22 KOG0802 E3 ubiquitin ligase [P 96.2 0.0027 5.8E-08 62.4 2.1 49 28-83 288-340 (543)
23 PHA02926 zinc finger-like prot 95.5 0.01 2.2E-07 53.6 2.8 53 28-85 167-231 (242)
24 KOG0828 Predicted E3 ubiquitin 95.3 0.011 2.5E-07 58.5 2.6 52 27-84 567-634 (636)
25 KOG0317 Predicted E3 ubiquitin 95.3 0.019 4.1E-07 53.3 3.8 52 27-86 235-286 (293)
26 PF13923 zf-C3HC4_2: Zinc fing 95.0 0.0099 2.1E-07 38.4 0.8 39 34-79 1-39 (39)
27 smart00504 Ubox Modified RING 93.7 0.055 1.2E-06 37.3 2.5 44 33-84 3-46 (63)
28 COG5219 Uncharacterized conser 93.3 0.023 4.9E-07 60.2 -0.2 54 28-84 1466-1523(1525)
29 KOG0827 Predicted E3 ubiquitin 92.8 0.075 1.6E-06 51.5 2.6 48 30-80 3-52 (465)
30 KOG0823 Predicted E3 ubiquitin 92.4 0.19 4.1E-06 45.4 4.4 51 28-84 44-95 (230)
31 KOG1493 Anaphase-promoting com 92.0 0.048 1E-06 42.1 0.2 49 33-85 22-82 (84)
32 PF14634 zf-RING_5: zinc-RING 91.6 0.11 2.3E-06 34.6 1.5 42 33-81 1-44 (44)
33 KOG4265 Predicted E3 ubiquitin 89.8 0.42 9.1E-06 45.5 4.2 53 28-87 287-339 (349)
34 PF05883 Baculo_RING: Baculovi 89.8 0.17 3.7E-06 42.3 1.4 41 29-71 24-69 (134)
35 KOG1785 Tyrosine kinase negati 89.5 0.13 2.9E-06 50.2 0.7 50 30-85 368-417 (563)
36 TIGR00599 rad18 DNA repair pro 89.1 0.21 4.5E-06 48.2 1.6 50 28-85 23-72 (397)
37 KOG0804 Cytoplasmic Zn-finger 89.0 0.2 4.3E-06 49.3 1.5 48 28-84 172-222 (493)
38 COG5194 APC11 Component of SCF 88.8 0.28 6E-06 38.2 1.9 28 57-86 56-83 (88)
39 PLN02189 cellulose synthase 87.3 0.55 1.2E-05 50.2 3.6 55 28-86 31-89 (1040)
40 PF14570 zf-RING_4: RING/Ubox 84.6 0.56 1.2E-05 32.9 1.4 45 34-84 1-48 (48)
41 PLN02436 cellulose synthase A 84.5 0.83 1.8E-05 49.1 3.2 54 28-85 33-90 (1094)
42 KOG1645 RING-finger-containing 83.4 0.89 1.9E-05 44.5 2.7 50 30-83 3-55 (463)
43 PF05290 Baculo_IE-1: Baculovi 82.2 0.78 1.7E-05 38.7 1.6 56 30-86 79-134 (140)
44 KOG1734 Predicted RING-contain 81.5 0.21 4.6E-06 46.5 -2.2 59 23-86 216-283 (328)
45 PF10272 Tmpp129: Putative tra 71.3 3.8 8.3E-05 39.2 3.1 55 28-85 268-352 (358)
46 KOG2177 Predicted E3 ubiquitin 70.7 1.7 3.7E-05 35.8 0.6 46 28-81 10-55 (386)
47 PF15227 zf-C3HC4_4: zinc fing 70.7 1.7 3.6E-05 28.9 0.4 40 34-79 1-42 (42)
48 KOG2930 SCF ubiquitin ligase, 70.6 3.1 6.7E-05 33.9 2.0 27 57-85 83-109 (114)
49 TIGR00570 cdk7 CDK-activating 68.4 3.7 8E-05 38.7 2.3 50 31-86 3-56 (309)
50 KOG4445 Uncharacterized conser 68.0 4.3 9.3E-05 38.7 2.6 53 29-86 113-188 (368)
51 PF08746 zf-RING-like: RING-li 67.3 2.9 6.3E-05 28.1 1.0 22 58-79 22-43 (43)
52 KOG0825 PHD Zn-finger protein 63.0 6.5 0.00014 41.8 3.0 27 57-85 146-172 (1134)
53 PLN02638 cellulose synthase A 61.6 8.9 0.00019 41.6 3.8 55 28-85 14-71 (1079)
54 PF07800 DUF1644: Protein of u 57.4 14 0.00029 32.1 3.6 40 30-71 1-49 (162)
55 PLN02400 cellulose synthase 56.4 9.2 0.0002 41.5 2.9 55 28-85 33-90 (1085)
56 PLN02195 cellulose synthase A 56.3 8.8 0.00019 41.3 2.7 52 30-84 5-59 (977)
57 PF10367 Vps39_2: Vacuolar sor 55.7 3.8 8.3E-05 30.6 -0.0 34 28-66 75-109 (109)
58 KOG1002 Nucleotide excision re 55.4 7.2 0.00016 39.8 1.8 57 28-90 533-592 (791)
59 KOG0320 Predicted E3 ubiquitin 54.9 12 0.00025 33.1 2.8 48 28-82 128-176 (187)
60 PF13445 zf-RING_UBOX: RING-ty 54.2 14 0.0003 24.9 2.6 39 34-77 1-43 (43)
61 KOG1039 Predicted E3 ubiquitin 53.8 8.4 0.00018 36.7 1.9 51 28-83 158-220 (344)
62 PLN02915 cellulose synthase A 52.5 12 0.00027 40.5 3.1 55 28-85 12-69 (1044)
63 PF04564 U-box: U-box domain; 52.4 6.6 0.00014 28.6 0.8 46 33-85 6-51 (73)
64 PF14569 zf-UDP: Zinc-binding 49.7 16 0.00036 28.2 2.6 57 28-87 6-65 (80)
65 KOG0802 E3 ubiquitin ligase [P 48.9 6.3 0.00014 39.0 0.3 49 26-86 474-522 (543)
66 smart00249 PHD PHD zinc finger 45.9 4.9 0.00011 25.1 -0.7 30 33-65 1-30 (47)
67 COG5236 Uncharacterized conser 45.5 24 0.00052 34.5 3.5 56 25-86 55-110 (493)
68 KOG1941 Acetylcholine receptor 45.4 8.4 0.00018 38.0 0.6 48 29-81 363-413 (518)
69 COG5432 RAD18 RING-finger-cont 43.8 8.4 0.00018 36.7 0.3 48 29-84 23-70 (391)
70 COG5175 MOT2 Transcriptional r 41.7 23 0.00049 34.6 2.8 51 30-86 13-66 (480)
71 PF05191 ADK_lid: Adenylate ki 40.9 15 0.00032 24.0 1.0 18 74-91 2-19 (36)
72 KOG2164 Predicted E3 ubiquitin 40.8 21 0.00045 36.0 2.4 49 31-85 186-237 (513)
73 PF05210 Sprouty: Sprouty prot 38.5 20 0.00043 29.1 1.6 25 42-71 54-78 (108)
74 KOG3899 Uncharacterized conser 37.4 20 0.00044 34.2 1.7 30 57-86 327-367 (381)
75 KOG1952 Transcription factor N 34.8 37 0.00081 36.3 3.3 53 28-84 188-247 (950)
76 PF12159 DUF3593: Protein of u 33.5 45 0.00097 26.4 2.8 22 183-204 2-23 (91)
77 KOG0287 Postreplication repair 33.1 15 0.00032 35.8 0.1 47 30-84 22-68 (442)
78 COG5574 PEX10 RING-finger-cont 31.8 61 0.0013 30.2 3.8 51 28-85 212-263 (271)
79 PF13894 zf-C2H2_4: C2H2-type 31.7 18 0.00039 19.5 0.3 12 75-86 2-13 (24)
80 PF00096 zf-C2H2: Zinc finger, 30.2 22 0.00047 19.7 0.5 12 75-86 2-13 (23)
81 smart00782 PhnA_Zn_Ribbon PhnA 29.7 47 0.001 23.0 2.1 23 70-92 4-27 (47)
82 KOG0956 PHD finger protein AF1 28.8 24 0.00052 37.1 0.8 58 30-87 116-185 (900)
83 KOG4323 Polycomb-like PHD Zn-f 28.4 33 0.00072 34.1 1.6 52 28-82 165-224 (464)
84 PF04423 Rad50_zn_hook: Rad50 27.1 45 0.00098 22.8 1.7 24 63-86 8-33 (54)
85 KOG1973 Chromatin remodeling p 25.4 36 0.00079 31.0 1.2 51 30-82 217-268 (274)
86 cd00924 Cyt_c_Oxidase_Vb Cytoc 23.8 25 0.00054 27.8 -0.1 23 67-89 73-95 (97)
87 PLN02294 cytochrome c oxidase 23.8 40 0.00086 29.6 1.1 26 67-92 135-160 (174)
88 KOG0956 PHD finger protein AF1 23.2 43 0.00094 35.3 1.4 53 33-86 7-75 (900)
89 KOG1428 Inhibitor of type V ad 22.7 73 0.0016 37.0 3.0 54 28-84 3483-3544(3738)
90 KOG4172 Predicted E3 ubiquitin 21.6 58 0.0013 23.9 1.4 44 32-85 8-55 (62)
91 PF10571 UPF0547: Uncharacteri 21.5 34 0.00074 20.9 0.2 13 72-84 13-25 (26)
92 KOG0824 Predicted E3 ubiquitin 21.3 78 0.0017 30.2 2.6 49 28-85 4-54 (324)
93 PF12874 zf-met: Zinc-finger o 21.2 40 0.00086 19.0 0.4 12 75-86 2-13 (25)
94 TIGR02052 MerP mercuric transp 20.9 1E+02 0.0022 20.9 2.6 23 192-214 5-27 (92)
95 PF13912 zf-C2H2_6: C2H2-type 20.1 44 0.00096 19.2 0.5 13 74-86 2-14 (27)
No 1
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.74 E-value=6.1e-19 Score=148.81 Aligned_cols=64 Identities=27% Similarity=0.618 Sum_probs=56.7
Q ss_pred CCCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecccCCC
Q 027157 26 SVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTPG 91 (227)
Q Consensus 26 ~~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~~~~ 91 (227)
++++.++.||||+++++ .+.+||+|+||+|+||++||++|++++++..||+|+++|.......|
T Consensus 3 ~~s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kp 66 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKK 66 (162)
T ss_pred CcCCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCC
Confidence 35778999999998874 46789999999999999999999999999999999999998865544
No 2
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.71 E-value=3.9e-18 Score=118.03 Aligned_cols=48 Identities=38% Similarity=1.092 Sum_probs=44.2
Q ss_pred eeeEeeec-CCCCccccccccCCccceehHHHHHHHHHHhCCccccccc
Q 027157 33 ECRVCQEE-DFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICH 80 (227)
Q Consensus 33 ~CRIC~ee-~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk 80 (227)
+||||+++ +++++++.||+|+|+++|+|++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 3567899999999999999999999999999999999996
No 3
>PHA02862 5L protein; Provisional
Probab=99.69 E-value=1.2e-17 Score=139.51 Aligned_cols=56 Identities=29% Similarity=0.653 Sum_probs=50.6
Q ss_pred CCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeeccc
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~ 88 (227)
.+.||||++++++. .+||+|+||+|+||++||++|++.+++..||+|+++|.....
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 46899999998654 699999999999999999999999999999999999987643
No 4
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=99.69 E-value=2.1e-17 Score=133.52 Aligned_cols=91 Identities=19% Similarity=0.328 Sum_probs=70.0
Q ss_pred ecccCCCCCCCCCCCCceeee-eCCccCcchh---hHHH-HHhhhhhhccccccccccCCcccchhhhhhcccchhhhhh
Q 027157 85 PGYQTPGYRVPQPSDPFAFVA-YGGRPLAYSP---IAQA-EARRLLNQFENADRQESESASSFMCTAFLAVQLPCFCNAM 159 (227)
Q Consensus 85 ~~y~~~~~~~~~~~~~~~~~~-~~~~p~~~~~---is~~-~~~~fle~~~~~d~~~~~~~~~~~~crslAi~~pf~~~~g 159 (227)
++||+|||+.+..+.+.+++. |++.+.++++ ++|. ++++|+|+ +| |+|+++|++|++|||++|
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~~~~~a~~~ae~~~l~~-~y-~e~~~~~~~~a~~CRsvA---------- 68 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRDPRFLAMAAAERQFLES-EY-DEYAASNTRGAACCRSVA---------- 68 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccchhhhhhhhhhhhcccc-cc-ccccccCCCceeHHHHHH----------
Confidence 589999986655555665543 4444554444 7887 48899997 77 899999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhHHHHHH
Q 027157 160 LVTLMLFMDIFINHHTQSEDDVKTKCYLALGLL 192 (227)
Q Consensus 160 l~~~i~~m~llllrh~~~~~~~~~~~~~al~ll 192 (227)
||||+||++||++++.+.++..| +++++
T Consensus 69 ----li~m~LLllRhal~l~~~~~~~~-s~~lf 96 (118)
T PF12428_consen 69 ----LIFMVLLLLRHALALVTGGAEDY-SFTLF 96 (118)
T ss_pred ----HHHHHHHHHHHHHHHhcCCcccc-cHHHH
Confidence 99999999999999988544443 35555
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.68 E-value=7.8e-18 Score=115.63 Aligned_cols=46 Identities=37% Similarity=1.076 Sum_probs=37.8
Q ss_pred eeEeeecCCC-CccccccccCCccceehHHHHHHHHHHhCCcccccc
Q 027157 34 CRVCQEEDFI-HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79 (227)
Q Consensus 34 CRIC~ee~~e-~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEIC 79 (227)
||||++++++ ++|++||+|+|+++|||++||++|+.++++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999999864 469999999999999999999999999999999998
No 6
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.58 E-value=9.5e-16 Score=135.02 Aligned_cols=67 Identities=31% Similarity=0.731 Sum_probs=58.9
Q ss_pred CCCCCCCeeeEeeecCCCC---ccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecccCCCC
Q 027157 26 SVSNERSECRVCQEEDFIH---KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTPGY 92 (227)
Q Consensus 26 ~~s~~~~~CRIC~ee~~e~---~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~~~~~ 92 (227)
..+.++..||||+++.++. .++.||.|+|+++++|+.|+++|+..|++..||+|++.|.+.++.+.+
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~ 142 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKP 142 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecc
Confidence 3455578999999987542 699999999999999999999999999999999999999998777655
No 7
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.55 E-value=2.5e-15 Score=150.99 Aligned_cols=67 Identities=30% Similarity=0.852 Sum_probs=59.8
Q ss_pred CCCCCeeeEeeecC-CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee--ecccCCCCCC
Q 027157 28 SNERSECRVCQEED-FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR--PGYQTPGYRV 94 (227)
Q Consensus 28 s~~~~~CRIC~ee~-~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~--~~y~~~~~~~ 94 (227)
+++...||||+.|+ +++++-+||+|+||+||+|++||.+|...+++.+||+||++|+ ..|...+|+.
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~ 78 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQI 78 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcc
Confidence 45568999999998 6799999999999999999999999999999999999999865 5688888743
No 8
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.8e-14 Score=128.64 Aligned_cols=65 Identities=25% Similarity=0.694 Sum_probs=56.7
Q ss_pred CCCCCeeeEeeecCCCCc---cccccccCCccceehHHHHHHHHHHhC------CccccccceeeeecccCCCC
Q 027157 28 SNERSECRVCQEEDFIHK---MEAPCGCKGTIQFAHRKCIQKWCNAKK------KMICEICHQDYRPGYQTPGY 92 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~---Li~PC~CkGSlk~vH~~CL~rWl~~kg------~~~CEICk~~y~~~y~~~~~ 92 (227)
.+.++.||||+..++|+. +++||+|+|+.|+||+.||.+|+++|. ...|++|+++|...++...+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 557899999999988754 899999999999999999999999983 57999999999998765443
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.75 E-value=7.6e-06 Score=54.21 Aligned_cols=42 Identities=36% Similarity=0.903 Sum_probs=31.5
Q ss_pred CeeeEeeecCC--CCccccccccCCccceehHHHHHHHHHHhCCccccccc
Q 027157 32 SECRVCQEEDF--IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICH 80 (227)
Q Consensus 32 ~~CRIC~ee~~--e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk 80 (227)
+.|-||+++-+ +.....||. +..|.+|+++|++.+ .+|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 36899998863 344566653 899999999999885 4999996
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00029 Score=66.49 Aligned_cols=49 Identities=27% Similarity=0.702 Sum_probs=40.2
Q ss_pred CeeeEeeecCCC--CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 32 SECRVCQEEDFI--HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 32 ~~CRIC~ee~~e--~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..|-||+|+..+ .--+.||+ +..|.+|+..|+... .+.|++||+.-...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCC
Confidence 899999999744 33478998 889999999999887 56799999965443
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.21 E-value=0.00022 Score=64.12 Aligned_cols=51 Identities=22% Similarity=0.610 Sum_probs=38.4
Q ss_pred CCCCeeeEeeecCCCC-------ccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 29 NERSECRVCQEEDFIH-------KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~-------~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..+.+|-||+++-.+. ....||. +..|..|+.+|+.. +.+|++|+..+...
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 4568999999974321 1345665 88999999999864 56999999998743
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.15 E-value=0.00027 Score=44.49 Aligned_cols=44 Identities=36% Similarity=0.801 Sum_probs=33.7
Q ss_pred eeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCcccccccee
Q 027157 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQD 82 (227)
Q Consensus 33 ~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~ 82 (227)
.|.||++...+.....||. +..|..|+.+|++. ++..|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764444455565 67999999999986 67789999875
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0011 Score=63.57 Aligned_cols=55 Identities=24% Similarity=0.631 Sum_probs=41.5
Q ss_pred CCCCCCeeeEeeecC--CC----------CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeeccc
Q 027157 27 VSNERSECRVCQEED--FI----------HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~--~e----------~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~ 88 (227)
-.++...|-||.||- .+ .+-..||. +..|-.||+.|+..+ .+|+||+.+......
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~ifd~~ 349 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVIFDQS 349 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCccccccC
Confidence 356778999999983 11 23567887 789999999999765 599999998544333
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.88 E-value=0.00074 Score=59.24 Aligned_cols=52 Identities=25% Similarity=0.645 Sum_probs=41.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--------------hCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--------------KKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--------------kg~~~CEICk~~y~~ 85 (227)
.++.-+|-||++... .+.+++|. +.....|+.+|+.. ++...|++|+..+..
T Consensus 15 ~~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 556789999998754 56778876 78999999999863 245689999998753
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00087 Score=62.83 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=40.7
Q ss_pred CCCCCeeeEeeecC--CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 28 SNERSECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
...+.+|-||++.- .+.-++.||+ +-.|..|+.+|+.-- +.+|++|+.+..
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCCC
Confidence 44669999998875 3557899998 789999999999742 248999997654
No 16
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.68 E-value=0.00086 Score=49.54 Aligned_cols=43 Identities=28% Similarity=0.777 Sum_probs=29.9
Q ss_pred CCeeeEeeecCCC-----------C-ccccccccCCccceehHHHHHHHHHHhCCccccccc
Q 027157 31 RSECRVCQEEDFI-----------H-KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICH 80 (227)
Q Consensus 31 ~~~CRIC~ee~~e-----------~-~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk 80 (227)
.+.|-||+++-.+ - ....+|+ +..|..||.+|++.+. +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 4459999887521 1 1234554 8899999999996654 999996
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.65 E-value=0.0011 Score=42.88 Aligned_cols=41 Identities=29% Similarity=0.749 Sum_probs=34.9
Q ss_pred eeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCcccccc
Q 027157 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79 (227)
Q Consensus 34 CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEIC 79 (227)
|.||++..++.....||. +.+..+|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 678988776555588988 88999999999998888899987
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.61 E-value=0.0015 Score=39.54 Aligned_cols=39 Identities=38% Similarity=0.906 Sum_probs=30.2
Q ss_pred eeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCcccccc
Q 027157 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79 (227)
Q Consensus 34 CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEIC 79 (227)
|.||++.. ......||. +..|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 456777876 5689999999998 566678876
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.56 E-value=0.0011 Score=45.07 Aligned_cols=46 Identities=28% Similarity=0.687 Sum_probs=36.9
Q ss_pred CCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeee
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
...|.||++... +....||+ +. +-..|+.+|.+ ++.+|++|+++++
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 467999988764 47888997 56 89999999998 7789999999875
No 20
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.50 E-value=0.00082 Score=49.50 Aligned_cols=53 Identities=19% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCeeeEeeecCC--CCcccccc---ccCCccceehHHHHHHHHHHhC---------Cccccccceeeeec
Q 027157 31 RSECRVCQEEDF--IHKMEAPC---GCKGTIQFAHRKCIQKWCNAKK---------KMICEICHQDYRPG 86 (227)
Q Consensus 31 ~~~CRIC~ee~~--e~~Li~PC---~CkGSlk~vH~~CL~rWl~~kg---------~~~CEICk~~y~~~ 86 (227)
+..|.||++... +.....-| .|+ +..|..||.+|+.... ..+|+.|+.+.+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 467999987642 22222334 675 7899999999997631 24799999988754
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.26 E-value=0.003 Score=48.96 Aligned_cols=52 Identities=23% Similarity=0.469 Sum_probs=37.6
Q ss_pred CCeeeEeeecCC-----------CCccccccccCCccceehHHHHHHHHHHh-CCccccccceeeeec
Q 027157 31 RSECRVCQEEDF-----------IHKMEAPCGCKGTIQFAHRKCIQKWCNAK-KKMICEICHQDYRPG 86 (227)
Q Consensus 31 ~~~CRIC~ee~~-----------e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-g~~~CEICk~~y~~~ 86 (227)
...|-||+..-+ +-+++ =+.|+ +-+|..|+.+|++.. .+..|+.|+++++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 567888876542 11221 24564 789999999999874 578999999998753
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0027 Score=62.36 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=40.2
Q ss_pred CCCCCeeeEeeecCCCC----ccccccccCCccceehHHHHHHHHHHhCCccccccceee
Q 027157 28 SNERSECRVCQEEDFIH----KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~----~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y 83 (227)
......|.||+|+.... +-..||. +-.|..||++|++. ..+|++|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 34578999999987432 6678887 89999999999988 56999999943
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=95.51 E-value=0.01 Score=53.60 Aligned_cols=53 Identities=23% Similarity=0.604 Sum_probs=40.7
Q ss_pred CCCCCeeeEeeecCC------C--CccccccccCCccceehHHHHHHHHHHh----CCccccccceeeee
Q 027157 28 SNERSECRVCQEEDF------I--HKMEAPCGCKGTIQFAHRKCIQKWCNAK----KKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~------e--~~Li~PC~CkGSlk~vH~~CL~rWl~~k----g~~~CEICk~~y~~ 85 (227)
.+++.+|-||+|.-- + .....+|+ +.....|+.+|.+.+ ....|++|+..|..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 456799999998631 1 13566776 789999999999865 25679999999884
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.011 Score=58.49 Aligned_cols=52 Identities=25% Similarity=0.682 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeeecCC----------------CCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 27 VSNERSECRVCQEEDF----------------IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~----------------e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
..+....|-||...-+ .+.+.+||. +..|+.||++|.+..+ ..|++|+....
T Consensus 567 ~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred hhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 4667889999987531 145788998 7999999999998432 68999987643
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.019 Score=53.30 Aligned_cols=52 Identities=27% Similarity=0.901 Sum_probs=43.2
Q ss_pred CCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 27 VSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.++....|-+|++.-+ ++--+||. +..=-.|++.|+++|.. |++|+..+++.
T Consensus 235 i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCCc
Confidence 3566689999998764 56789998 67788999999999875 99999998864
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.97 E-value=0.0099 Score=38.44 Aligned_cols=39 Identities=28% Similarity=0.737 Sum_probs=28.9
Q ss_pred eeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCcccccc
Q 027157 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEIC 79 (227)
Q Consensus 34 CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEIC 79 (227)
|.||++...+.....||. +...+.|+++|++. +.+|++|
T Consensus 1 C~iC~~~~~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 678877665422578887 88999999999977 3689887
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.74 E-value=0.055 Score=37.34 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=35.3
Q ss_pred eeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 33 ~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
.|.||.+.-. ++...||. +-.-+.|+.+|++. +.+|++|++.+.
T Consensus 3 ~Cpi~~~~~~-~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK-DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC-CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 5889977654 47788874 78999999999977 568999998774
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.27 E-value=0.023 Score=60.21 Aligned_cols=54 Identities=22% Similarity=0.610 Sum_probs=38.2
Q ss_pred CCCCCeeeEeeecCC--CCcc-cccc-ccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 28 SNERSECRVCQEEDF--IHKM-EAPC-GCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~--e~~L-i~PC-~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
-+...+|-||..--. +..+ ..-| -|| .-.|..||-+|++++++.+|++|+.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345678999975432 1111 1122 233 5699999999999999999999998764
No 29
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.075 Score=51.52 Aligned_cols=48 Identities=25% Similarity=0.682 Sum_probs=32.8
Q ss_pred CCCeeeEeeecCCCCccccccc-cCCccceehHHHHHHHHHHhCC-ccccccc
Q 027157 30 ERSECRVCQEEDFIHKMEAPCG-CKGTIQFAHRKCIQKWCNAKKK-MICEICH 80 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~-CkGSlk~vH~~CL~rWl~~kg~-~~CEICk 80 (227)
.+..|.||-+.-+...-..|=. |. +-.|..||.+|+..-.. +.|++|+
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cG---hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCG---HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccceeeEeccCCccccccccccchh---hHHHHHHHHHHHccCCccCCCCcee
Confidence 3578999944433222222322 32 67999999999987654 7999999
No 30
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.19 Score=45.42 Aligned_cols=51 Identities=16% Similarity=0.555 Sum_probs=41.4
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhC-Cccccccceeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKK-KMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg-~~~CEICk~~y~ 84 (227)
+...=.|-||++.-. ++.+++|. +..==.||-+|+..+. ...|++||.+..
T Consensus 44 ~~~~FdCNICLd~ak-dPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK-DPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccC-CCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456678999998875 48899998 6777899999998874 567799998854
No 31
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.048 Score=42.06 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=36.5
Q ss_pred eeeEeeecCC-----------CCccccccccCCccceehHHHHHHHHHHh-CCccccccceeeee
Q 027157 33 ECRVCQEEDF-----------IHKMEAPCGCKGTIQFAHRKCIQKWCNAK-KKMICEICHQDYRP 85 (227)
Q Consensus 33 ~CRIC~ee~~-----------e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-g~~~CEICk~~y~~ 85 (227)
+|-||..+-+ +=+|+-- .|+ +..|..|+.+|++.+ ++..|+.|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 8889987642 2234322 442 789999999999876 46799999999975
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.62 E-value=0.11 Score=34.56 Aligned_cols=42 Identities=29% Similarity=0.655 Sum_probs=34.7
Q ss_pred eeeEeeecC--CCCccccccccCCccceehHHHHHHHHHHhCCccccccce
Q 027157 33 ECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQ 81 (227)
Q Consensus 33 ~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~ 81 (227)
.|-+|++.. +....+.+|. +.+..+|+.++. .+...|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898877 3457899987 889999999999 77889999985
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=0.42 Score=45.54 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=36.7
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGY 87 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y 87 (227)
++++++|=||+.+.. +.++.||+= -..=..|.+... -..+.|+||++.+....
T Consensus 287 ~~~gkeCVIClse~r-dt~vLPCRH----LCLCs~Ca~~Lr--~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 287 SESGKECVICLSESR-DTVVLPCRH----LCLCSGCAKSLR--YQTNNCPICRQPIEELL 339 (349)
T ss_pred ccCCCeeEEEecCCc-ceEEecchh----hehhHhHHHHHH--HhhcCCCccccchHhhh
Confidence 467999999988764 467888771 123346766655 34568999999887543
No 34
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.79 E-value=0.17 Score=42.32 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCCCeeeEeeecCCC--CccccccccCCcc---ceehHHHHHHHHHHh
Q 027157 29 NERSECRVCQEEDFI--HKMEAPCGCKGTI---QFAHRKCIQKWCNAK 71 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e--~~Li~PC~CkGSl---k~vH~~CL~rWl~~k 71 (227)
....+|+||++.-.+ +...-+ |.|.+ |..|..|++||.+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt--~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVT--DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEe--cCCeehHHHHHHHHHHHHHHhhc
Confidence 457899999987643 444444 44555 459999999996554
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.48 E-value=0.13 Score=50.21 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=41.1
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.-..|.||-|.+. +.-+.||. +..-..||..|..+.+..+|+.|+.+.+-
T Consensus 368 TFeLCKICaendK-dvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 368 TFELCKICAENDK-DVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred hHHHHHHhhccCC-Cccccccc-----chHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3468999977664 34578997 67888999999999989999999998763
No 36
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.09 E-value=0.21 Score=48.25 Aligned_cols=50 Identities=14% Similarity=0.399 Sum_probs=39.9
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
......|.||++.-. .+.+.||. +.....|+.+|+..+ ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 446689999987654 46678887 788999999999764 489999998754
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.97 E-value=0.2 Score=49.29 Aligned_cols=48 Identities=25% Similarity=0.537 Sum_probs=34.8
Q ss_pred CCCCCeeeEeeecCCC---CccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 28 SNERSECRVCQEEDFI---HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e---~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
..+.++|-+|++--++ +.+-.+|. +-.|..|+++|-.. +|++|++.-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 6788999999987533 33555665 77999999999754 6666665443
No 38
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=88.81 E-value=0.28 Score=38.22 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=24.5
Q ss_pred ceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 57 QFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 57 k~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+-.|-.|+.||++.|| .|++++++|+..
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~~ 83 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVLA 83 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEEe
Confidence 6789999999999955 899999999853
No 39
>PLN02189 cellulose synthase
Probab=87.27 E-value=0.55 Score=50.21 Aligned_cols=55 Identities=18% Similarity=0.454 Sum_probs=41.2
Q ss_pred CCCCCeeeEeeecC---CCCccccccc-cCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCG-CKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~-CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
......|+||-++- .++.....|+ |. --|=+.|. +.=.+.|++.|+.||++|+..
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchhhc
Confidence 34567999998874 3456677888 73 33888998 555566899999999999843
No 40
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=84.62 E-value=0.56 Score=32.85 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=21.3
Q ss_pred eeEeeecC-CCCccccccccCCccceehHHHHHHHHHHh--CCccccccceeee
Q 027157 34 CRVCQEED-FIHKMEAPCGCKGTIQFAHRKCIQKWCNAK--KKMICEICHQDYR 84 (227)
Q Consensus 34 CRIC~ee~-~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k--g~~~CEICk~~y~ 84 (227)
|.+|.++- ..+.-..||.|. ++-|+.=|.+.+ .+..|+-|+++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 45665554 334568899995 456666677665 4789999999985
No 41
>PLN02436 cellulose synthase A
Probab=84.51 E-value=0.83 Score=49.11 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=41.0
Q ss_pred CCCCCeeeEeeecC---CCCccccccc-cCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCG-CKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~-CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
...+.+|+||-++- .++.+..-|+ |. --|=+.|. +.-.+.|++.|+.||++|+.
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 44567999998874 4566777788 63 33888998 55556689999999999983
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=0.89 Score=44.51 Aligned_cols=50 Identities=26% Similarity=0.659 Sum_probs=39.0
Q ss_pred CCCeeeEeeecCC---CCccccccccCCccceehHHHHHHHHHHhCCccccccceee
Q 027157 30 ERSECRVCQEEDF---IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83 (227)
Q Consensus 30 ~~~~CRIC~ee~~---e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y 83 (227)
.+.+|-||+++-. +..++.| +|. +.....|+++|+.++-...|+.|+.+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4678999999863 3456665 443 678999999999877788999998774
No 43
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.21 E-value=0.78 Score=38.66 Aligned_cols=56 Identities=18% Similarity=0.511 Sum_probs=46.7
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..-+|-||+|...|+....|=.|-|. +.----|.+-|.-.+---.|++||+.|+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 56789999999888889999999883 455566778898888888999999999864
No 44
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.50 E-value=0.21 Score=46.54 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=43.6
Q ss_pred CCCCCCCCCCeeeEeeecC-----CC----CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 23 GDGSVSNERSECRVCQEED-----FI----HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 23 ~~~~~s~~~~~CRIC~ee~-----~e----~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
|-..+..+...|-+|-..- +| +.-...|+ +-.|+.|++-|+--.++.+|+-||.+....
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3334567788999995431 22 33344455 789999999999999999999999987654
No 45
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.27 E-value=3.8 Score=39.24 Aligned_cols=55 Identities=22% Similarity=0.529 Sum_probs=37.5
Q ss_pred CCCCCeeeEeeecCCCCcc-------------------ccccccCCccceehHHHHHHHHHHh-----------CCcccc
Q 027157 28 SNERSECRVCQEEDFIHKM-------------------EAPCGCKGTIQFAHRKCIQKWCNAK-----------KKMICE 77 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~L-------------------i~PC~CkGSlk~vH~~CL~rWl~~k-----------g~~~CE 77 (227)
.++...|-=|..+...-++ =.+|.|+ -.-=.+|+-||+..+ |+..|+
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CP 344 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCP 344 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCcccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCC
Confidence 4566777777665432111 2366775 344678999999886 578999
Q ss_pred ccceeeee
Q 027157 78 ICHQDYRP 85 (227)
Q Consensus 78 ICk~~y~~ 85 (227)
.|+.+|-.
T Consensus 345 tCRa~FCi 352 (358)
T PF10272_consen 345 TCRAKFCI 352 (358)
T ss_pred CCccccee
Confidence 99999854
No 46
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.70 E-value=1.7 Score=35.78 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=37.9
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccce
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~ 81 (227)
..+...|.||++.-.+. .+.||. +..=+.|+..|.. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 55788999999887544 778887 6778899999998 7789999993
No 47
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=70.65 E-value=1.7 Score=28.92 Aligned_cols=40 Identities=23% Similarity=0.644 Sum_probs=26.0
Q ss_pred eeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCC--cccccc
Q 027157 34 CRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKK--MICEIC 79 (227)
Q Consensus 34 CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~--~~CEIC 79 (227)
|-||++--. ++...+|. +-.=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 557766543 57777886 67789999999987654 488877
No 48
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=3.1 Score=33.91 Aligned_cols=27 Identities=19% Similarity=0.659 Sum_probs=23.0
Q ss_pred ceehHHHHHHHHHHhCCccccccceeeee
Q 027157 57 QFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 57 k~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+-.|..|+.||++.++ .|++|.++...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 6689999999998764 89999998654
No 49
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.43 E-value=3.7 Score=38.65 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=36.5
Q ss_pred CCeeeEeeecCCC----CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 31 RSECRVCQEEDFI----HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 31 ~~~CRIC~ee~~e----~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+..|-+|....-. .-+++||. +-.=..|+.+.+. ++...|+.|+..++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 3579999887521 23677775 6677899999653 4667999999887754
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.00 E-value=4.3 Score=38.65 Aligned_cols=53 Identities=13% Similarity=0.458 Sum_probs=38.0
Q ss_pred CCCCeeeEeeecCCC--CccccccccCCccceehHHHHHHHHHHh---------------------CCccccccceeeee
Q 027157 29 NERSECRVCQEEDFI--HKMEAPCGCKGTIQFAHRKCIQKWCNAK---------------------KKMICEICHQDYRP 85 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e--~~Li~PC~CkGSlk~vH~~CL~rWl~~k---------------------g~~~CEICk~~y~~ 85 (227)
-...+|-||+-+-.+ .-.+++|- +|.|-.||.|.+++- -...|++|+.....
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 344677777765533 34678887 899999999888662 14679999988765
Q ss_pred c
Q 027157 86 G 86 (227)
Q Consensus 86 ~ 86 (227)
+
T Consensus 188 e 188 (368)
T KOG4445|consen 188 E 188 (368)
T ss_pred c
Confidence 4
No 51
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=67.34 E-value=2.9 Score=28.13 Aligned_cols=22 Identities=23% Similarity=0.615 Sum_probs=15.9
Q ss_pred eehHHHHHHHHHHhCCcccccc
Q 027157 58 FAHRKCIQKWCNAKKKMICEIC 79 (227)
Q Consensus 58 ~vH~~CL~rWl~~kg~~~CEIC 79 (227)
-.|..|++++++.+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999998887799877
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.97 E-value=6.5 Score=41.76 Aligned_cols=27 Identities=11% Similarity=0.592 Sum_probs=22.7
Q ss_pred ceehHHHHHHHHHHhCCccccccceeeee
Q 027157 57 QFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 57 k~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+|.|..|+..|.+.- .+|++|+.+|--
T Consensus 146 H~FC~~Ci~sWsR~a--qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRCA--QTCPVDRGEFGE 172 (1134)
T ss_pred cccHHHHhhhhhhhc--ccCchhhhhhhe
Confidence 499999999998654 589999999853
No 53
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.56 E-value=8.9 Score=41.60 Aligned_cols=55 Identities=15% Similarity=0.375 Sum_probs=36.6
Q ss_pred CCCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
...+.+|+||-++- .++.+.--|+=.| --|=+.|. +.=.+-|++.|+.||++|+.
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 34567999998874 2344444454211 23778887 33444589999999999983
No 54
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=57.41 E-value=14 Score=32.08 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=26.1
Q ss_pred CCCeeeEeeecCC---------CCccccccccCCccceehHHHHHHHHHHh
Q 027157 30 ERSECRVCQEEDF---------IHKMEAPCGCKGTIQFAHRKCIQKWCNAK 71 (227)
Q Consensus 30 ~~~~CRIC~ee~~---------e~~Li~PC~CkGSlk~vH~~CL~rWl~~k 71 (227)
+...|-||+|-.- -++--.|=-|.. .|-|.+||.|..+..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 4578999987641 111222323654 589999999999764
No 55
>PLN02400 cellulose synthase
Probab=56.40 E-value=9.2 Score=41.50 Aligned_cols=55 Identities=16% Similarity=0.384 Sum_probs=35.5
Q ss_pred CCCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
...+.+|+||-++- .++.+.--|+=.| --|=|.|. +.=.+-|+..|+.||++|+-
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCY-EYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCY-EYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCC--Cccccchh-heecccCCccCcccCCcccc
Confidence 34567999998874 2344444444211 23667786 33334589999999999983
No 56
>PLN02195 cellulose synthase A
Probab=56.35 E-value=8.8 Score=41.25 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=34.8
Q ss_pred CCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 30 ERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 30 ~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
....|+||-++- .++.+.--|+=.| --|=+.|. +.=++-|++.|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchh-hhhhhcCCccCCccCCccc
Confidence 566899998764 2334443444211 23778887 4444558999999999999
No 57
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.70 E-value=3.8 Score=30.61 Aligned_cols=34 Identities=29% Similarity=0.625 Sum_probs=24.5
Q ss_pred CCCCCeeeEeeecCCCC-ccccccccCCccceehHHHHHH
Q 027157 28 SNERSECRVCQEEDFIH-KMEAPCGCKGTIQFAHRKCIQK 66 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~-~Li~PC~CkGSlk~vH~~CL~r 66 (227)
-++...|.+|...-..+ -.+.||+ +.+|..|++|
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 34567799998776433 3567775 6899999864
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=55.41 E-value=7.2 Score=39.83 Aligned_cols=57 Identities=21% Similarity=0.599 Sum_probs=44.4
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH---hCCccccccceeeeecccCC
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA---KKKMICEICHQDYRPGYQTP 90 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~---kg~~~CEICk~~y~~~y~~~ 90 (227)
..+..+|-+|+++.+ +..++-|. +-.-+.|+.+++.. +.+.+|+.|+-......+.|
T Consensus 533 nk~~~~C~lc~d~ae-d~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAE-DYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ccCceeecccCChhh-hhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 457789999988765 46787776 56778999998865 45799999999888775544
No 59
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=12 Score=33.12 Aligned_cols=48 Identities=19% Similarity=0.508 Sum_probs=33.9
Q ss_pred CCCCCeeeEeeecCCCC-ccccccccCCccceehHHHHHHHHHHhCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIH-KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~-~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~ 82 (227)
.+...-|-||++..++. +.-+-|. +..=.+|++.-+ |...+|++|+.+
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~al--k~~~~CP~C~kk 176 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDAL--KNTNKCPTCRKK 176 (187)
T ss_pred cccccCCCceecchhhccccccccc-----hhHHHHHHHHHH--HhCCCCCCcccc
Confidence 44558899999988653 3334454 566678887766 456799999974
No 60
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=54.23 E-value=14 Score=24.91 Aligned_cols=39 Identities=28% Similarity=0.703 Sum_probs=20.6
Q ss_pred eeEeeecCC-C-CccccccccCCccceehHHHHHHHHHHh--CCcccc
Q 027157 34 CRVCQEEDF-I-HKMEAPCGCKGTIQFAHRKCIQKWCNAK--KKMICE 77 (227)
Q Consensus 34 CRIC~ee~~-e-~~Li~PC~CkGSlk~vH~~CL~rWl~~k--g~~~CE 77 (227)
|-||.+-.+ + .++..||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 556766322 2 36888977 688999999999876 455663
No 61
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=8.4 Score=36.74 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=36.7
Q ss_pred CCCCCeeeEeeecCCCCc-------cccccccCCccceehHHHHHHHHHHhC-----Cccccccceee
Q 027157 28 SNERSECRVCQEEDFIHK-------MEAPCGCKGTIQFAHRKCIQKWCNAKK-----KMICEICHQDY 83 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~-------Li~PC~CkGSlk~vH~~CL~rWl~~kg-----~~~CEICk~~y 83 (227)
....++|-||++...+.. ...+|. +..=.+|+.+|...+. ...|++|+..=
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 356899999998764322 123465 5566789999997776 68999998763
No 62
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.46 E-value=12 Score=40.46 Aligned_cols=55 Identities=22% Similarity=0.466 Sum_probs=37.2
Q ss_pred CCCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+-.+.+|.||-++- .++.+.--|+=.| --|=+.|. +.=.+-|+..|+.||++|+.
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 55788999998774 2344444444211 23778888 44445689999999999984
No 63
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=52.41 E-value=6.6 Score=28.59 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=29.3
Q ss_pred eeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 33 ~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.|-|+.+-- .++.+.|+. +..-+.|+++|++. +..+|++|++....
T Consensus 6 ~CpIt~~lM-~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELM-RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB--SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred CCcCcCcHh-hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 345554332 246777754 68899999999987 66789999876654
No 64
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.66 E-value=16 Score=28.22 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecc
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGY 87 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y 87 (227)
.....+|.||-++- .++.+..-|.=- ---+=+.|.+-=. .-|+..|+.|+.+|+...
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC--~fPvCr~CyEYEr-keg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHEC--AFPVCRPCYEYER-KEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHH-HTS-SB-TTT--B----T
T ss_pred hcCCcccccccCccccCCCCCEEEEEccc--CCccchhHHHHHh-hcCcccccccCCCccccc
Confidence 45678999997764 234444444311 1347788876444 347889999999998643
No 65
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=6.3 Score=38.99 Aligned_cols=49 Identities=24% Similarity=0.764 Sum_probs=35.9
Q ss_pred CCCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 26 SVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 26 ~~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
......+.|+||.++. ..-+.||. |..|+.+|...+. .|+.|+......
T Consensus 474 ~l~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKED 522 (543)
T ss_pred hhhcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhcc
Confidence 3356678999998777 33455555 9999999997754 789998776543
No 66
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.46 E-value=24 Score=34.50 Aligned_cols=56 Identities=16% Similarity=0.427 Sum_probs=38.5
Q ss_pred CCCCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 25 GSVSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 25 ~~~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
++..++...|-||-+... -.-..||. +-.-.-|.-|...--.+..|.+|+.+....
T Consensus 55 ddtDEen~~C~ICA~~~T-Ys~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 55 DDTDEENMNCQICAGSTT-YSARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccccceeEEecCCce-EEEeccCC-----chHHHHHHHHHHHHHhccCCCccccccceE
Confidence 334678889999976543 23578887 233345666666666788999999987543
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=45.45 E-value=8.4 Score=37.97 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=37.6
Q ss_pred CCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccce
Q 027157 29 NERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQ 81 (227)
Q Consensus 29 ~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~ 81 (227)
+.+-.|-.|-+.- +++---.||+ +..|..|+++.+...++++|+-|+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456788885543 2333467888 8999999999999999999999993
No 69
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=43.84 E-value=8.4 Score=36.71 Aligned_cols=48 Identities=23% Similarity=0.550 Sum_probs=35.5
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
..+..||||.+--. -+.++||. +-.-.-|+.+-+++. -.|++|+..+.
T Consensus 23 Ds~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~q--p~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQ--PFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCC--CCCccccccHH
Confidence 35688999976543 46788887 456677888888664 47999998875
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=41.67 E-value=23 Score=34.56 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=35.6
Q ss_pred CCCeeeEeeecCC-CCccccccccCCccceehHHHHHHHHHHh--CCccccccceeeeec
Q 027157 30 ERSECRVCQEEDF-IHKMEAPCGCKGTIQFAHRKCIQKWCNAK--KKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~-e~~Li~PC~CkGSlk~vH~~CL~rWl~~k--g~~~CEICk~~y~~~ 86 (227)
+++.|-.|.++-+ .+....||.|. | +-|---|-+.+ -+..|+-|+..|.-+
T Consensus 13 eed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 5566999988853 34567899994 3 33444466555 367999999998644
No 71
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=40.87 E-value=15 Score=24.03 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=13.7
Q ss_pred ccccccceeeeecccCCC
Q 027157 74 MICEICHQDYRPGYQTPG 91 (227)
Q Consensus 74 ~~CEICk~~y~~~y~~~~ 91 (227)
++|+.|+..|...+.+|.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 579999999998876543
No 72
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=21 Score=35.97 Aligned_cols=49 Identities=22% Similarity=0.558 Sum_probs=35.0
Q ss_pred CCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh---CCccccccceeeee
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK---KKMICEICHQDYRP 85 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k---g~~~CEICk~~y~~ 85 (227)
...|-||+++..-- ..+-|. +..=-.||.+..+.+ +-..|++|...+.+
T Consensus 186 ~~~CPICL~~~~~p-~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-VRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-cccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999887532 222254 555667877766543 67899999998876
No 73
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=38.52 E-value=20 Score=29.08 Aligned_cols=25 Identities=20% Similarity=0.612 Sum_probs=18.6
Q ss_pred CCCccccccccCCccceehHHHHHHHHHHh
Q 027157 42 FIHKMEAPCGCKGTIQFAHRKCIQKWCNAK 71 (227)
Q Consensus 42 ~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k 71 (227)
+++--..||+|.. +..|..||..-.
T Consensus 54 e~d~ad~PCSC~~-----~~~c~~RW~~L~ 78 (108)
T PF05210_consen 54 EGDCADHPCSCDT-----PSRCCARWLALA 78 (108)
T ss_pred CcccCCCccccCC-----ccchHHHHHHHH
Confidence 3333456999986 899999998653
No 74
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=20 Score=34.16 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=23.8
Q ss_pred ceehHHHHHHHHHHh-----------CCccccccceeeeec
Q 027157 57 QFAHRKCIQKWCNAK-----------KKMICEICHQDYRPG 86 (227)
Q Consensus 57 k~vH~~CL~rWl~~k-----------g~~~CEICk~~y~~~ 86 (227)
-.--++||.+|+.-+ |+-+|+.|++.|-..
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 355689999999654 678999999998653
No 75
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=34.81 E-value=37 Score=36.33 Aligned_cols=53 Identities=28% Similarity=0.622 Sum_probs=40.0
Q ss_pred CCCCCeeeEeeecCC--CCccccccccCCccceehHHHHHHHHHHh-----CCccccccceeee
Q 027157 28 SNERSECRVCQEEDF--IHKMEAPCGCKGTIQFAHRKCIQKWCNAK-----KKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~--e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-----g~~~CEICk~~y~ 84 (227)
++...+|-||.+.-. ...| +|+.=.+..|..|+++|-..+ ..+.|+-|++.++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 566789999998763 2333 344445789999999999764 4789999997766
No 76
>PF12159 DUF3593: Protein of unknown function (DUF3593); InterPro: IPR021995 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.
Probab=33.53 E-value=45 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHhhcCC
Q 027157 183 TKCYLALGLLIYLITFVLVSNK 204 (227)
Q Consensus 183 ~~~~~al~ll~~~~~~~~~~~~ 204 (227)
++..|+++++.||.|.+++.+.
T Consensus 2 ~~~lF~lSl~pYL~FL~~l~~~ 23 (91)
T PF12159_consen 2 PDPLFALSLFPYLGFLWFLTRS 23 (91)
T ss_pred chhHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999998543
No 77
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=33.15 E-value=15 Score=35.77 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=36.3
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
..-.|-||++=-. -+++.||+ +-.-.-|+.+.++.+ ..|+.|..+++
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccC--CCCCceecccc
Confidence 4468999987553 47999976 556678888888765 58999998875
No 78
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.75 E-value=61 Score=30.23 Aligned_cols=51 Identities=25% Similarity=0.598 Sum_probs=37.5
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHH-HHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQK-WCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~r-Wl~~kg~~~CEICk~~y~~ 85 (227)
+.....|-||+++-+ .+.-+||. +..--.||.. |...+ ...|++|++.-.+
T Consensus 212 p~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccc
Confidence 344577999987664 56778887 6777889988 87554 4579999987554
No 79
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=31.72 E-value=18 Score=19.49 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=7.8
Q ss_pred cccccceeeeec
Q 027157 75 ICEICHQDYRPG 86 (227)
Q Consensus 75 ~CEICk~~y~~~ 86 (227)
.|++|+..|...
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 699999998753
No 80
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=30.20 E-value=22 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=10.1
Q ss_pred cccccceeeeec
Q 027157 75 ICEICHQDYRPG 86 (227)
Q Consensus 75 ~CEICk~~y~~~ 86 (227)
.|+.|+..|...
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 699999999764
No 81
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=29.69 E-value=47 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=14.6
Q ss_pred HhCCccccccceeeee-cccCCCC
Q 027157 70 AKKKMICEICHQDYRP-GYQTPGY 92 (227)
Q Consensus 70 ~kg~~~CEICk~~y~~-~y~~~~~ 92 (227)
.+...+||+|+..-.. .|..||.
T Consensus 4 ~Rs~~kCELC~a~~~L~vy~Vpp~ 27 (47)
T smart00782 4 ARCESKCELCGSDSPLVVYAVPPS 27 (47)
T ss_pred HHcCCcccCcCCCCCceEEecCCC
Confidence 3445689999977553 3555543
No 82
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=28.78 E-value=24 Score=37.10 Aligned_cols=58 Identities=24% Similarity=0.461 Sum_probs=40.0
Q ss_pred CCCeeeEeeecCCCCc----cccccccCCccceehHHHHHHH---HHHh-----CCccccccceeeeecc
Q 027157 30 ERSECRVCQEEDFIHK----MEAPCGCKGTIQFAHRKCIQKW---CNAK-----KKMICEICHQDYRPGY 87 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~----Li~PC~CkGSlk~vH~~CL~rW---l~~k-----g~~~CEICk~~y~~~y 87 (227)
-.++|.||.|++.+++ --.-|+=.|=-+-.|..|.|+- +.|. +-..|--|++-|....
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 4589999988864322 1233655555578999999873 4443 3568999999997553
No 83
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=28.38 E-value=33 Score=34.14 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=39.0
Q ss_pred CCCCCeeeEeeecC--CCCccccccccCCccceehHHHHHHHHHHh------CCcccccccee
Q 027157 28 SNERSECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCNAK------KKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k------g~~~CEICk~~ 82 (227)
.....+|-.|++.. +.++|+-=|+|+ .+.|+.|-+--+... ..+.|..|...
T Consensus 165 ~~~n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 165 HKVNLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccccceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 34445599999776 346788778886 899999987766442 47899999865
No 84
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.05 E-value=45 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=12.3
Q ss_pred HHHHHHHHh--CCccccccceeeeec
Q 027157 63 CIQKWCNAK--KKMICEICHQDYRPG 86 (227)
Q Consensus 63 CL~rWl~~k--g~~~CEICk~~y~~~ 86 (227)
-+.++++.- .+..|++|+..|...
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-HH
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCHH
Confidence 456666542 233999999998754
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=25.42 E-value=36 Score=31.00 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCeeeEeeecCCCCccccccccCCcc-ceehHHHHHHHHHHhCCcccccccee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTI-QFAHRKCIQKWCNAKKKMICEICHQD 82 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSl-k~vH~~CL~rWl~~kg~~~CEICk~~ 82 (227)
++..=++|. ....+.|+ -|.|.+=- .|+|-.|+--=..-+|++.|+-|+..
T Consensus 217 ~e~~yC~Cn-qvsyg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICN-QVSYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEec-cccccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 344444665 23345666 37776544 89999996544444689999999865
No 86
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=23.79 E-value=25 Score=27.79 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.0
Q ss_pred HHHHhCCccccccceeeeecccC
Q 027157 67 WCNAKKKMICEICHQDYRPGYQT 89 (227)
Q Consensus 67 Wl~~kg~~~CEICk~~y~~~y~~ 89 (227)
|+.+.....|+.|++-|+..+-.
T Consensus 73 ~l~~g~~~rC~eCG~~fkL~~v~ 95 (97)
T cd00924 73 WLEKGKPKRCPECGHVFKLVDVG 95 (97)
T ss_pred EEeCCCceeCCCCCcEEEEEECC
Confidence 44555688999999999987653
No 87
>PLN02294 cytochrome c oxidase subunit Vb
Probab=23.77 E-value=40 Score=29.58 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=19.9
Q ss_pred HHHHhCCccccccceeeeecccCCCC
Q 027157 67 WCNAKKKMICEICHQDYRPGYQTPGY 92 (227)
Q Consensus 67 Wl~~kg~~~CEICk~~y~~~y~~~~~ 92 (227)
|+.+.+...|+.|++.|+.+|.-|.-
T Consensus 135 ~L~kGkp~RCpeCG~~fkL~~vG~~~ 160 (174)
T PLN02294 135 WLEKGKSFECPVCTQYFELEVVGPGG 160 (174)
T ss_pred EecCCCceeCCCCCCEEEEEEeCCCC
Confidence 55555677899999999999865543
No 88
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.21 E-value=43 Score=35.32 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=35.8
Q ss_pred eeeEeeecC--CCCccccccccCCccceehHHHH-------HHHHHHh-------CCccccccceeeeec
Q 027157 33 ECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCI-------QKWCNAK-------KKMICEICHQDYRPG 86 (227)
Q Consensus 33 ~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL-------~rWl~~k-------g~~~CEICk~~y~~~ 86 (227)
-|.+|-||. .|++|+ -|.=.+=---||+.|- -.|+-.| -..+||+|-+++--.
T Consensus 7 GCCVCSDErGWaeNPLV-YCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGAL 75 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLV-YCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGAL 75 (900)
T ss_pred ceeeecCcCCCccCcee-eecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccce
Confidence 489998886 578887 2432222245999996 3587544 357999998887544
No 89
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=22.74 E-value=73 Score=37.04 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh--------CCccccccceeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK--------KKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k--------g~~~CEICk~~y~ 84 (227)
....+.|-||+.|.-. ..||---|--+..|-.|..+-+..+ +-..|++|+.+..
T Consensus 3483 QD~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567899999987621 3455433334899999998766554 5679999998864
No 90
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=58 Score=23.95 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=26.8
Q ss_pred CeeeEeeecCCCCcc---ccccccCCccceehHHHHHH-HHHHhCCccccccceeeee
Q 027157 32 SECRVCQEEDFIHKM---EAPCGCKGTIQFAHRKCIQK-WCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 32 ~~CRIC~ee~~e~~L---i~PC~CkGSlk~vH~~CL~r-Wl~~kg~~~CEICk~~y~~ 85 (227)
++|-||.|..-++.+ -+=|-| ..|-.| |.. ....|++|+.+.+.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmC--------y~Cg~rl~~~--~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMC--------YACGLRLKKA--LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhH--------HHHHHHHHHc--cCCcCcchhhHHHH
Confidence 889999887643322 122333 345433 433 66799999987653
No 91
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.52 E-value=34 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.4
Q ss_pred CCccccccceeee
Q 027157 72 KKMICEICHQDYR 84 (227)
Q Consensus 72 g~~~CEICk~~y~ 84 (227)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 4568999999885
No 92
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=78 Score=30.22 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=32.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~y~~ 85 (227)
....++|-||+... .|+-.+..-|.-|-.---.. .+...|.+|++++.-
T Consensus 4 ~~~~~eC~IC~nt~---------n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 4 RTKKKECLICYNTG---------NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cccCCcceeeeccC---------CcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 45678999998754 33344556688775433322 256789999999753
No 93
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.22 E-value=40 Score=19.02 Aligned_cols=12 Identities=25% Similarity=1.018 Sum_probs=9.8
Q ss_pred cccccceeeeec
Q 027157 75 ICEICHQDYRPG 86 (227)
Q Consensus 75 ~CEICk~~y~~~ 86 (227)
.|++|+..|...
T Consensus 2 ~C~~C~~~f~s~ 13 (25)
T PF12874_consen 2 YCDICNKSFSSE 13 (25)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCCcCCH
Confidence 699999998754
No 94
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=20.86 E-value=1e+02 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEE
Q 027157 192 LIYLITFVLVSNKSFSPRPVIIV 214 (227)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~~~ 214 (227)
+..|++|++++|.++-++...-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (92)
T TIGR02052 5 ATLLALFVLTSLPAWAATQTVTL 27 (92)
T ss_pred HHHHHHHHHhcchhhhcceEEEE
Confidence 44566778888888887765443
No 95
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=20.07 E-value=44 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=10.4
Q ss_pred ccccccceeeeec
Q 027157 74 MICEICHQDYRPG 86 (227)
Q Consensus 74 ~~CEICk~~y~~~ 86 (227)
..|+.|+..|...
T Consensus 2 ~~C~~C~~~F~~~ 14 (27)
T PF13912_consen 2 FECDECGKTFSSL 14 (27)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCccCCccCCh
Confidence 3799999999754
Done!