Query 027157
Match_columns 227
No_of_seqs 241 out of 818
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 5.8E-20 2E-24 130.2 3.3 57 28-85 3-59 (60)
2 2d8s_A Cellular modulator of i 99.7 3.4E-18 1.2E-22 127.2 4.9 65 28-92 12-77 (80)
3 2ep4_A Ring finger protein 24; 98.2 1.8E-06 6E-11 60.7 4.8 52 28-86 12-65 (74)
4 2kiz_A E3 ubiquitin-protein li 98.2 1.2E-06 4.2E-11 60.7 4.0 53 27-86 10-64 (69)
5 1v87_A Deltex protein 2; ring- 98.1 1.6E-06 5.6E-11 65.5 3.8 54 30-88 24-97 (114)
6 2ect_A Ring finger protein 126 98.1 8.6E-07 2.9E-11 62.9 2.0 56 27-89 11-68 (78)
7 2ecm_A Ring finger and CHY zin 97.9 2.6E-06 8.7E-11 56.3 1.6 49 29-84 3-54 (55)
8 2ecl_A Ring-box protein 2; RNF 97.9 2.7E-06 9.1E-11 61.8 1.7 50 30-86 14-77 (81)
9 2ea6_A Ring finger protein 4; 97.9 3.5E-06 1.2E-10 57.7 1.7 52 27-85 11-68 (69)
10 2d8t_A Dactylidin, ring finger 97.9 3.6E-06 1.2E-10 59.0 1.5 56 27-90 11-66 (71)
11 2djb_A Polycomb group ring fin 97.9 1E-05 3.5E-10 56.8 3.8 53 28-87 12-64 (72)
12 2l0b_A E3 ubiquitin-protein li 97.9 7E-06 2.4E-10 60.6 3.0 51 28-85 37-89 (91)
13 1x4j_A Ring finger protein 38; 97.8 6.9E-06 2.4E-10 58.0 2.3 51 28-85 20-72 (75)
14 2ct2_A Tripartite motif protei 97.8 1.7E-05 5.8E-10 56.8 4.0 54 28-86 12-69 (88)
15 1iym_A EL5; ring-H2 finger, ub 97.8 3.5E-06 1.2E-10 55.8 0.3 49 29-84 3-54 (55)
16 1chc_A Equine herpes virus-1 r 97.8 8.5E-06 2.9E-10 56.1 2.2 51 29-86 3-53 (68)
17 2ecn_A Ring finger protein 141 97.8 7.9E-06 2.7E-10 56.7 1.7 50 28-86 12-61 (70)
18 2yur_A Retinoblastoma-binding 97.7 1.3E-05 4.5E-10 56.7 2.5 51 28-84 12-63 (74)
19 2csy_A Zinc finger protein 183 97.7 3E-05 1E-09 55.4 4.3 50 27-84 11-60 (81)
20 3ng2_A RNF4, snurf, ring finge 97.7 7.6E-06 2.6E-10 56.5 0.8 53 27-86 6-64 (71)
21 3ztg_A E3 ubiquitin-protein li 97.6 4.3E-05 1.5E-09 55.6 3.7 52 27-84 9-61 (92)
22 2xeu_A Ring finger protein 4; 97.6 1E-05 3.4E-10 54.6 0.0 49 30-85 2-56 (64)
23 2ysl_A Tripartite motif-contai 97.6 2.3E-05 8E-10 54.4 1.8 52 28-85 17-69 (73)
24 2ecw_A Tripartite motif-contai 97.6 5.2E-05 1.8E-09 53.5 3.7 52 28-85 16-71 (85)
25 2ecy_A TNF receptor-associated 97.6 3.4E-05 1.1E-09 53.1 2.5 51 28-85 12-62 (66)
26 3dpl_R Ring-box protein 1; ubi 97.5 3E-05 1E-09 59.9 2.4 49 30-85 36-101 (106)
27 2ct0_A Non-SMC element 1 homol 97.5 3.4E-05 1.2E-09 56.6 2.4 53 28-86 12-65 (74)
28 2ecj_A Tripartite motif-contai 97.5 5.6E-05 1.9E-09 50.1 2.8 46 28-79 12-58 (58)
29 2ecv_A Tripartite motif-contai 97.5 0.00011 3.7E-09 51.8 4.1 53 28-86 16-72 (85)
30 2ysj_A Tripartite motif-contai 97.3 0.00017 5.7E-09 49.0 3.2 46 28-79 17-63 (63)
31 4a0k_B E3 ubiquitin-protein li 97.2 7.2E-05 2.5E-09 59.1 0.6 49 30-85 47-112 (117)
32 1t1h_A Gspef-atpub14, armadill 97.1 0.00019 6.4E-09 50.6 2.5 51 28-85 5-55 (78)
33 1e4u_A Transcriptional repress 97.1 0.0002 6.7E-09 52.3 2.6 55 28-86 8-63 (78)
34 2egp_A Tripartite motif-contai 97.1 5.5E-05 1.9E-09 53.1 -0.5 52 28-85 9-65 (79)
35 3lrq_A E3 ubiquitin-protein li 97.1 0.00016 5.5E-09 54.0 2.0 50 29-85 20-70 (100)
36 1g25_A CDK-activating kinase a 97.1 0.00021 7.3E-09 48.9 2.0 50 30-85 2-55 (65)
37 2y43_A E3 ubiquitin-protein li 96.9 0.00025 8.6E-09 52.3 1.5 49 30-85 21-69 (99)
38 2ckl_B Ubiquitin ligase protei 96.8 0.00045 1.5E-08 55.5 1.8 49 30-85 53-102 (165)
39 3fl2_A E3 ubiquitin-protein li 96.7 0.00079 2.7E-08 51.7 2.6 49 30-85 51-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00021 7.3E-09 54.0 -0.8 52 28-86 4-61 (133)
41 1jm7_A BRCA1, breast cancer ty 96.6 0.00059 2E-08 50.8 1.4 50 30-85 20-70 (112)
42 2ckl_A Polycomb group ring fin 96.5 0.00044 1.5E-08 51.9 0.3 48 30-85 14-62 (108)
43 4ayc_A E3 ubiquitin-protein li 96.5 0.00069 2.4E-08 53.2 1.1 46 31-84 53-98 (138)
44 4ap4_A E3 ubiquitin ligase RNF 96.3 0.00069 2.4E-08 51.1 0.2 52 28-86 69-126 (133)
45 3hct_A TNF receptor-associated 96.3 0.0016 5.6E-08 49.7 2.2 51 28-85 15-65 (118)
46 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0018 6.3E-08 60.4 2.9 59 28-89 305-377 (381)
47 1z6u_A NP95-like ring finger p 96.2 0.0017 5.8E-08 52.3 1.9 50 30-86 77-126 (150)
48 1rmd_A RAG1; V(D)J recombinati 96.1 0.0028 9.5E-08 47.9 2.6 50 30-86 22-71 (116)
49 2y1n_A E3 ubiquitin-protein li 96.0 0.0028 9.5E-08 59.3 2.6 49 31-86 332-380 (389)
50 3l11_A E3 ubiquitin-protein li 95.8 0.00054 1.9E-08 51.8 -2.6 51 28-85 12-62 (115)
51 2vje_B MDM4 protein; proto-onc 95.5 0.0033 1.1E-07 43.5 0.7 51 28-85 4-56 (63)
52 2vje_A E3 ubiquitin-protein li 95.1 0.0055 1.9E-07 42.5 1.0 50 29-85 6-57 (64)
53 2kr4_A Ubiquitin conjugation f 95.0 0.021 7.1E-07 41.6 3.9 50 28-85 11-60 (85)
54 1jm7_B BARD1, BRCA1-associated 94.5 0.0033 1.1E-07 47.9 -1.6 46 29-84 20-66 (117)
55 2c2l_A CHIP, carboxy terminus 94.4 0.022 7.4E-07 47.9 3.0 50 29-85 206-255 (281)
56 3knv_A TNF receptor-associated 94.3 0.0079 2.7E-07 47.9 0.2 49 28-83 28-76 (141)
57 4ic3_A E3 ubiquitin-protein li 94.1 0.0066 2.3E-07 43.0 -0.7 45 30-86 23-68 (74)
58 1wim_A KIAA0161 protein; ring 94.1 0.022 7.4E-07 41.7 2.1 50 29-83 3-62 (94)
59 3nw0_A Non-structural maintena 94.0 0.026 8.9E-07 49.0 2.8 51 30-86 179-230 (238)
60 2kre_A Ubiquitin conjugation f 93.7 0.034 1.2E-06 41.9 2.6 50 28-85 26-75 (100)
61 3hcs_A TNF receptor-associated 93.7 0.028 9.6E-07 45.0 2.2 51 28-85 15-65 (170)
62 2ea5_A Cell growth regulator w 93.2 0.065 2.2E-06 37.6 3.2 49 28-88 12-61 (68)
63 1bor_A Transcription factor PM 92.3 0.016 5.4E-07 38.8 -1.0 46 29-85 4-49 (56)
64 2yu4_A E3 SUMO-protein ligase 91.5 0.13 4.4E-06 37.8 3.1 49 28-82 4-59 (94)
65 2ecg_A Baculoviral IAP repeat- 91.4 0.065 2.2E-06 37.6 1.3 44 31-86 25-69 (75)
66 1wgm_A Ubiquitin conjugation f 91.0 0.14 4.9E-06 38.3 2.9 51 28-85 19-69 (98)
67 2f42_A STIP1 homology and U-bo 90.7 0.1 3.4E-06 43.8 2.1 51 28-85 103-153 (179)
68 3htk_C E3 SUMO-protein ligase 89.8 0.13 4.3E-06 46.1 2.0 52 28-85 178-232 (267)
69 3t6p_A Baculoviral IAP repeat- 86.5 0.082 2.8E-06 48.2 -1.4 45 30-86 294-339 (345)
70 2yho_A E3 ubiquitin-protein li 82.9 0.22 7.5E-06 35.7 -0.2 47 30-88 17-64 (79)
71 2l43_A N-teminal domain from h 78.6 0.33 1.1E-05 36.1 -0.5 53 27-82 21-75 (88)
72 2bay_A PRE-mRNA splicing facto 78.2 0.93 3.2E-05 31.1 1.7 47 32-86 4-51 (61)
73 2lri_C Autoimmune regulator; Z 76.6 0.47 1.6E-05 33.6 -0.2 49 28-82 9-59 (66)
74 2ku3_A Bromodomain-containing 71.2 0.53 1.8E-05 33.8 -1.1 52 28-82 13-66 (71)
75 2ysm_A Myeloid/lymphoid or mix 62.5 0.81 2.8E-05 34.5 -1.7 50 27-79 3-54 (111)
76 2k16_A Transcription initiatio 61.7 0.63 2.1E-05 32.9 -2.3 53 29-84 16-70 (75)
77 1f62_A Transcription factor WS 61.4 0.95 3.3E-05 29.6 -1.3 46 33-81 2-49 (51)
78 1weo_A Cellulose synthase, cat 60.8 14 0.00047 28.3 4.9 56 28-86 13-71 (93)
79 1wev_A Riken cDNA 1110020M19; 60.7 0.46 1.6E-05 35.2 -3.3 57 29-88 14-78 (88)
80 2e6r_A Jumonji/ARID domain-con 53.6 0.99 3.4E-05 33.7 -2.5 52 28-82 13-66 (92)
81 2l5u_A Chromodomain-helicase-D 50.8 3.3 0.00011 28.3 0.1 49 28-82 8-58 (61)
82 1wen_A Inhibitor of growth fam 49.2 2.3 7.9E-05 30.3 -1.0 48 28-82 13-65 (71)
83 2yql_A PHD finger protein 21A; 46.5 1.1 3.9E-05 30.1 -2.8 48 28-81 6-55 (56)
84 2jmi_A Protein YNG1, ING1 homo 43.8 1.4 4.9E-05 33.1 -2.9 50 28-81 23-75 (90)
85 3ql9_A Transcriptional regulat 43.4 13 0.00046 29.5 2.5 47 28-80 54-109 (129)
86 2lbm_A Transcriptional regulat 39.9 11 0.00039 30.4 1.6 47 28-80 60-115 (142)
87 1wep_A PHF8; structural genomi 39.0 24 0.00082 24.9 3.1 54 28-85 9-66 (79)
88 2yt5_A Metal-response element- 39.0 2 7E-05 29.4 -2.6 52 28-82 3-61 (66)
89 1weu_A Inhibitor of growth fam 38.5 4.1 0.00014 30.6 -1.1 49 28-82 33-85 (91)
90 3v43_A Histone acetyltransfera 36.7 11 0.00038 28.4 1.0 34 30-66 4-43 (112)
91 1wem_A Death associated transc 36.5 13 0.00044 26.1 1.3 52 29-84 14-72 (76)
92 1wew_A DNA-binding family prot 35.8 9.2 0.00032 27.2 0.4 50 28-82 13-72 (78)
93 2kwj_A Zinc finger protein DPF 35.0 7.4 0.00025 29.6 -0.2 34 32-68 2-42 (114)
94 3u5n_A E3 ubiquitin-protein li 34.5 2.3 8E-05 35.4 -3.4 49 30-84 6-56 (207)
95 2ko5_A Ring finger protein Z; 33.2 19 0.00066 27.7 1.9 49 31-88 28-76 (99)
96 2vpb_A Hpygo1, pygopus homolog 32.4 13 0.00046 25.8 0.8 49 28-80 5-64 (65)
97 3o36_A Transcription intermedi 29.6 4 0.00014 33.2 -2.7 49 30-84 3-53 (184)
98 2vnf_A ING 4, P29ING4, inhibit 29.5 3 0.0001 28.6 -3.0 48 28-81 7-58 (60)
99 2ri7_A Nucleosome-remodeling f 29.1 10 0.00035 30.2 -0.3 52 28-83 5-60 (174)
100 2m0f_A Zinc finger and BTB dom 27.7 18 0.00062 18.4 0.7 13 73-85 2-14 (29)
101 1p1p_A AA-conotoxin PIVA; neur 26.0 22 0.00075 21.0 0.8 16 44-59 8-23 (26)
102 2odx_A Cytochrome C oxidase po 25.8 10 0.00034 28.0 -0.9 23 69-91 52-74 (80)
103 2kvh_A Zinc finger and BTB dom 25.7 20 0.00069 18.3 0.6 13 73-85 3-15 (27)
104 2lvu_A Zinc finger and BTB dom 30.4 16 0.00054 18.6 0.0 13 74-86 3-15 (26)
105 2g6q_A Inhibitor of growth pro 24.2 4.1 0.00014 28.2 -3.1 50 28-81 8-59 (62)
106 1ard_A Yeast transcription fac 23.7 24 0.00082 17.9 0.7 13 74-86 3-15 (29)
107 2kvg_A Zinc finger and BTB dom 23.6 25 0.00085 18.1 0.7 14 73-86 3-16 (27)
108 4gne_A Histone-lysine N-methyl 23.3 13 0.00045 28.5 -0.7 47 27-79 11-59 (107)
109 2lv9_A Histone-lysine N-methyl 23.2 25 0.00084 26.1 0.8 49 28-80 25-74 (98)
110 1znf_A 31ST zinc finger from X 23.0 20 0.00069 18.1 0.3 13 74-86 2-14 (27)
111 2kvf_A Zinc finger and BTB dom 22.9 24 0.00082 18.0 0.6 14 73-86 3-16 (28)
112 1fp0_A KAP-1 corepressor; PHD 22.3 11 0.00036 28.3 -1.3 49 28-82 22-72 (88)
113 1mm2_A MI2-beta; PHD, zinc fin 22.1 5.3 0.00018 27.3 -2.8 48 28-81 6-55 (61)
114 2m0d_A Zinc finger and BTB dom 20.0 31 0.0011 17.4 0.7 14 73-86 3-16 (30)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.78 E-value=5.8e-20 Score=130.22 Aligned_cols=57 Identities=28% Similarity=0.755 Sum_probs=51.7
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.+++.+||||+++++ ++++.||+|+||++++|+.||++|++++++.+||+|+++|+.
T Consensus 3 ~~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 347789999998854 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=127.19 Aligned_cols=65 Identities=26% Similarity=0.748 Sum_probs=57.6
Q ss_pred CCCCCeeeEeeecC-CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecccCCCC
Q 027157 28 SNERSECRVCQEED-FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTPGY 92 (227)
Q Consensus 28 s~~~~~CRIC~ee~-~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~~~~~ 92 (227)
+.++..||||+++. ++++++.||+|+|+++++|+.||++|+..+++.+||+|+++|......+|+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 55778999999876 356789999999999999999999999999999999999999987766655
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.8e-06 Score=60.69 Aligned_cols=52 Identities=31% Similarity=0.600 Sum_probs=39.7
Q ss_pred CCCCCeeeEeeecCCCC--ccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFIH--KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~--~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..+...|.||+++..+. ....||. +..|..|+.+|++.++ +|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 45678999999986432 2334764 7899999999998754 899999988653
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.18 E-value=1.2e-06 Score=60.69 Aligned_cols=53 Identities=23% Similarity=0.570 Sum_probs=41.0
Q ss_pred CCCCCCeeeEeeecCC--CCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 27 VSNERSECRVCQEEDF--IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~--e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
...+...|.||++.-. +.....||. +..|..|+.+|++.++ +|++|++.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 3557789999988753 344567775 6799999999998754 699999987653
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.12 E-value=1.6e-06 Score=65.55 Aligned_cols=54 Identities=17% Similarity=0.398 Sum_probs=40.6
Q ss_pred CCCeeeEeeecCCCCc--------------c---ccccccCCccceehHHHHHHHHHH---hCCccccccceeeeeccc
Q 027157 30 ERSECRVCQEEDFIHK--------------M---EAPCGCKGTIQFAHRKCIQKWCNA---KKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~--------------L---i~PC~CkGSlk~vH~~CL~rWl~~---kg~~~CEICk~~y~~~y~ 88 (227)
....|-||+++-.+.. . ..||. +..|..||.+|+.. ++..+|++|+..|.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999998853211 1 56776 78999999999976 457899999999976533
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.11 E-value=8.6e-07 Score=62.88 Aligned_cols=56 Identities=23% Similarity=0.592 Sum_probs=42.3
Q ss_pred CCCCCCeeeEeeecCCC--CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecccC
Q 027157 27 VSNERSECRVCQEEDFI--HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQT 89 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e--~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~~ 89 (227)
...+...|.||++.-.+ .....||. +..|..|+.+|++.+ .+|++|++++......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcccC
Confidence 35677899999987643 23445765 789999999999654 6999999998765443
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.94 E-value=2.6e-06 Score=56.34 Aligned_cols=49 Identities=24% Similarity=0.624 Sum_probs=39.0
Q ss_pred CCCCeeeEeeecCC---CCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 29 NERSECRVCQEEDF---IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~---e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
.+...|.||+++-. +.....||. +..|..|+.+|++.+ .+|++|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 35678999998753 235677875 789999999999887 78999998764
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=2.7e-06 Score=61.85 Aligned_cols=50 Identities=22% Similarity=0.553 Sum_probs=36.1
Q ss_pred CCCeeeEeeecCCC-------------Cccccc-cccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFI-------------HKMEAP-CGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e-------------~~Li~P-C~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+...|-||+++.++ .....| |. +..|..|+.+|++.+ .+|++|++++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcchh
Confidence 45668888776532 133444 54 889999999999765 4999999997653
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.5e-06 Score=57.67 Aligned_cols=52 Identities=13% Similarity=0.399 Sum_probs=39.9
Q ss_pred CCCCCCeeeEeeecCCC------CccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 27 VSNERSECRVCQEEDFI------HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e------~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
...+...|-||++...+ .....||. +..|..|+.+|++. +.+|++|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 35577899999987532 11566775 78999999999987 4689999998753
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=3.6e-06 Score=58.99 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=43.3
Q ss_pred CCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecccCC
Q 027157 27 VSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQTP 90 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~~~ 90 (227)
...+...|.||++... ++...||. +..|..|+.+|+..+ .+|++|++.+.......
T Consensus 11 ~~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV-HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBCS-SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHHHHSC
T ss_pred cCCCCCCCccCCcccC-CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHhhccC
Confidence 3567789999988764 35666875 789999999999654 79999999988654433
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1e-05 Score=56.80 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=40.8
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeecc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGY 87 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y 87 (227)
..+...|.||++.-.+.....||. +..|..|+.+|++. +.+|++|++.+....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCccc
Confidence 445678999988765433334876 77899999999976 579999999987643
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.86 E-value=7e-06 Score=60.57 Aligned_cols=51 Identities=24% Similarity=0.669 Sum_probs=39.8
Q ss_pred CCCCCeeeEeeecCCC--CccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFI--HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e--~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.++...|.||+++..+ .....||. +..|..|+.+|++. +.+|++|++.+.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 4577899999987643 34557765 78999999999965 4599999988764
No 13
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=6.9e-06 Score=57.98 Aligned_cols=51 Identities=33% Similarity=0.680 Sum_probs=39.6
Q ss_pred CCCCCeeeEeeecCCCC--ccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIH--KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~--~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+...|.||+++-.+. ....||. +..|..|+.+|++.+ .+|++|++.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 34678999999886432 3566765 789999999999764 589999988764
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.7e-05 Score=56.79 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=42.9
Q ss_pred CCCCCeeeEeeecCCC---CccccccccCCccceehHHHHHHHHHHh-CCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFI---HKMEAPCGCKGTIQFAHRKCIQKWCNAK-KKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e---~~Li~PC~CkGSlk~vH~~CL~rWl~~k-g~~~CEICk~~y~~~ 86 (227)
..+...|.||++.-.+ .+...||. +..|..|+.+|++.+ +..+|++|++.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4567889999987643 25667775 789999999999876 568999999987653
No 15
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.78 E-value=3.5e-06 Score=55.78 Aligned_cols=49 Identities=27% Similarity=0.612 Sum_probs=37.1
Q ss_pred CCCCeeeEeeecCCC--Cccccc-cccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 29 NERSECRVCQEEDFI--HKMEAP-CGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e--~~Li~P-C~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
++...|-||+++-.+ .....| |+ +..|..|+.+|++. +.+|++|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 356789999988643 344555 54 78999999999965 568999998764
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.78 E-value=8.5e-06 Score=56.11 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=40.9
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
++...|.||++...+.....||. +..|..|+.+|+..+ .+|++|++.+...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 45678999998876545777876 679999999999765 5899999988743
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=7.9e-06 Score=56.69 Aligned_cols=50 Identities=26% Similarity=0.677 Sum_probs=41.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..+...|.||++...+ ...||. +..|..|+.+|+. ++.+|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 4467899999988765 777876 7799999999997 577999999987643
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.73 E-value=1.3e-05 Score=56.75 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCCCCeeeEeeecCCCCccccc-cccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAP-CGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~P-C~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
..+...|.||++.-. ++...| |. +..|+.|+.+|+..++...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT-TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh-CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456789999987764 456677 65 7899999999999888889999999643
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=3e-05 Score=55.43 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=40.0
Q ss_pred CCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 27 VSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
...+...|.||++... ++...||. +..|..|+.+|++. ...|++|++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQ-NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCC-SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhc-CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456779999988764 35667876 67899999999965 568999999875
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.70 E-value=7.6e-06 Score=56.54 Aligned_cols=53 Identities=13% Similarity=0.385 Sum_probs=40.6
Q ss_pred CCCCCCeeeEeeecCCC------CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 27 VSNERSECRVCQEEDFI------HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e------~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.+++...|-||++.-.+ .....||. +..|..|+.+|++.+ .+|++|++.+...
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 35677899999987421 12567776 789999999999765 5999999988743
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.59 E-value=4.3e-05 Score=55.60 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=42.7
Q ss_pred CCCCCCeeeEeeecCCCCccccc-cccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 27 VSNERSECRVCQEEDFIHKMEAP-CGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~P-C~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
...+.-.|.||++.-. ++...| |. +..++.|+.+|+..++...|++|++.+.
T Consensus 9 ~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3567789999998664 466777 65 7789999999999888899999998873
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.58 E-value=1e-05 Score=54.58 Aligned_cols=49 Identities=14% Similarity=0.423 Sum_probs=37.9
Q ss_pred CCCeeeEeeecCCC------CccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFI------HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e------~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|.||++.-.+ .....||. +..|..|+.+|++. +.+|++|++.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 56789999887532 12566776 78999999999987 5699999998764
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2.3e-05 Score=54.44 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=41.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH-hCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA-KKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~-kg~~~CEICk~~y~~ 85 (227)
..+...|.||++... ++...||. +..|..|+.+|++. +++..|++|++++..
T Consensus 17 ~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS-SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccC-CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456789999998765 35555775 77999999999975 457799999998764
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.57 E-value=5.2e-05 Score=53.47 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=41.7
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh----CCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK----KKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k----g~~~CEICk~~y~~ 85 (227)
..+...|.||++... ++...||. +..|+.|+.+|+..+ +...|++|++.+..
T Consensus 16 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLK-EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCS-SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhC-cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 446678999988764 35567765 779999999999885 48899999998875
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=3.4e-05 Score=53.13 Aligned_cols=51 Identities=14% Similarity=0.398 Sum_probs=40.0
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+...|.||++.-. ++...||. +..|+.|+.+|++ +++.+|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC-SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEES-SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhc-CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 456788999987764 34456776 6789999999997 566789999998764
No 26
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.55 E-value=3e-05 Score=59.86 Aligned_cols=49 Identities=16% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCCeeeEeeecCCCC-----------------ccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIH-----------------KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~-----------------~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|-||++.-++. ....||+ +..|..|+.+|+.. +.+|++|+++|..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 457799998764321 2335665 88999999999876 5789999999764
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=3.4e-05 Score=56.59 Aligned_cols=53 Identities=17% Similarity=0.486 Sum_probs=40.9
Q ss_pred CCCCCeeeEeeecCCCCcccccc-ccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFIHKMEAPC-GCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC-~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.+....|-||++.-..+. -| .|. +-.|..|+.+|++.+++.+|++|++.+...
T Consensus 12 ~~~i~~C~IC~~~i~~g~---~C~~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ---SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE---ECSSSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC---ccCCCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 445689999988764322 23 453 678999999999888789999999988744
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=5.6e-05 Score=50.14 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=36.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH-hCCcccccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA-KKKMICEIC 79 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~-kg~~~CEIC 79 (227)
..+...|.||++...+ +...||. +..|..|+.+|++. +++.+|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999987754 4556765 67999999999875 567889987
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00011 Score=51.78 Aligned_cols=53 Identities=23% Similarity=0.528 Sum_probs=42.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH----hCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA----KKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~----kg~~~CEICk~~y~~~ 86 (227)
..+...|.||++...+ +...||. +..|..|+.+|+.. .+...|++|++.+...
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4466899999987643 5556775 67899999999987 3578999999998753
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00017 Score=49.01 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=36.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh-CCcccccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK-KKMICEIC 79 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-g~~~CEIC 79 (227)
..+...|.||++.-. ++...||. +..|+.|+.+|++.+ ++.+|++|
T Consensus 17 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS-SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC-CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 456789999988765 35556775 779999999999864 56789988
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.18 E-value=7.2e-05 Score=59.11 Aligned_cols=49 Identities=16% Similarity=0.516 Sum_probs=0.9
Q ss_pred CCCeeeEeeecCCCC-----------------ccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIH-----------------KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~-----------------~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|-||+++-++. .+..||. +..|..|+.+|+.. +.+|++|+++|..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 347899998874321 1223554 78999999999987 4689999999764
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.15 E-value=0.00019 Score=50.61 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|.||++.-. ++...||. +..++.|+.+|++ ++..+|++|++++..
T Consensus 5 ~~~~~~C~IC~~~~~-~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMK-DPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCS-SEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred CcccCCCCCcccccc-CCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 456789999987654 46667765 7899999999996 457899999998764
No 33
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.14 E-value=0.0002 Score=52.31 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=43.7
Q ss_pred CCCCCeeeEeeecCC-CCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDF-IHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~-e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.++...|-||++.-. +.....||.|. +-+++.|+.+|.+. ++..|++|++.|...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 346778999999764 34567888885 67999999998754 678999999999754
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.13 E-value=5.5e-05 Score=53.13 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh-----CCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK-----KKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-----g~~~CEICk~~y~~ 85 (227)
..+...|.||++.-.+ +...||. +..|+.|+.+|++.+ +...|++|++.+..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999987643 5556765 778999999999873 47899999999875
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.11 E-value=0.00016 Score=54.04 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=40.6
Q ss_pred CCCCeeeEeeecCCCCccc-cccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 29 NERSECRVCQEEDFIHKME-APCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li-~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.+...|.||++.-.+ +.. .||. +..|..|+.+|+..++ ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 356789999987753 455 7876 7899999999998875 799999999864
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.06 E-value=0.00021 Score=48.89 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=37.2
Q ss_pred CCCeeeEeeec-CCC--C-ccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEE-DFI--H-KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee-~~e--~-~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
++..|.||+++ ..+ . ....||. +..|..|+.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 35679999983 221 1 1457876 67999999999864 56789999998764
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.92 E-value=0.00025 Score=52.34 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=37.8
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|.||++.-.+.....||. +..|..|+.+|+.. +.+|++|++.+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 4578999988765422334776 78999999999974 4699999998775
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.75 E-value=0.00045 Score=55.55 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=37.9
Q ss_pred CCCeeeEeeecCCCCcccc-ccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEA-PCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~-PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|.||++.-.+ +... ||. +..|..|+.+|+.. ++..|++|+..+..
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 34589999887654 4443 776 78999999999974 46789999998853
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.68 E-value=0.00079 Score=51.67 Aligned_cols=49 Identities=22% Similarity=0.538 Sum_probs=39.0
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|.||++.-. ++...||. +..|+.|+.+|+. .+...|++|++.+..
T Consensus 51 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc-CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4468999987765 45666875 6799999999998 456699999998864
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.64 E-value=0.00021 Score=54.01 Aligned_cols=52 Identities=13% Similarity=0.405 Sum_probs=39.3
Q ss_pred CCCCCeeeEeeecCCC------CccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFI------HKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e------~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
..+...|-||++.-.+ .....||. +..|..|+.+|++.+ .+|++|++.+...
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 61 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccc
Confidence 3466789999987532 12667776 789999999999755 4999999988643
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.60 E-value=0.00059 Score=50.80 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=39.2
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHh-CCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAK-KKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~k-g~~~CEICk~~y~~ 85 (227)
+...|.||++.-. ++...||. +..|..|+.+|+..+ +..+|++|+..+..
T Consensus 20 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3468999988664 35566775 788999999999864 46799999988764
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.53 E-value=0.00044 Score=51.89 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=38.1
Q ss_pred CCCeeeEeeecCCCCcccc-ccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 30 ERSECRVCQEEDFIHKMEA-PCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~-PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
+...|.||++.-.+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 56789999887654 4443 876 788999999999764 799999998764
No 43
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.47 E-value=0.00069 Score=53.23 Aligned_cols=46 Identities=26% Similarity=0.684 Sum_probs=36.6
Q ss_pred CCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
...|.||++.-. ++...||. +..|..|+.+|+.. +.+|++|++.+.
T Consensus 53 ~~~C~iC~~~~~-~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI-EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS-SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCC
T ss_pred cCCCcccCcccC-CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 357999988764 45667875 78999999999864 468999998874
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.31 E-value=0.00069 Score=51.13 Aligned_cols=52 Identities=13% Similarity=0.408 Sum_probs=38.8
Q ss_pred CCCCCeeeEeeecCCC----C--ccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEEDFI----H--KMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e----~--~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.++...|-||++.-.+ + ....||. +..|..|+.+|++.+ .+|++|++.+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 4567789999876421 1 2445554 789999999999765 4999999988754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.29 E-value=0.0016 Score=49.67 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=40.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+...|.||++.-. ++...||. +..++.|+.+|+..++. +|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc-CeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 445679999987664 35566765 78999999999987754 89999988765
No 46
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.28 E-value=0.0018 Score=60.39 Aligned_cols=59 Identities=19% Similarity=0.561 Sum_probs=43.9
Q ss_pred CCCCCeeeEeeecCCC-Ccc-ccccc---cCCccceehHHHHHHHHHHhCC---------ccccccceeeeecccC
Q 027157 28 SNERSECRVCQEEDFI-HKM-EAPCG---CKGTIQFAHRKCIQKWCNAKKK---------MICEICHQDYRPGYQT 89 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e-~~L-i~PC~---CkGSlk~vH~~CL~rWl~~kg~---------~~CEICk~~y~~~y~~ 89 (227)
.+...+|-||++...+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....+.+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 4577899999988643 222 34463 64 78999999999987543 6899999988766543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.18 E-value=0.0017 Score=52.28 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=39.5
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+...|.||++.-. ++...||. +..++.|+.+|+.. +...|++|++.+...
T Consensus 77 ~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc-CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4468999988664 45667876 67899999999974 556899999998754
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.10 E-value=0.0028 Score=47.91 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=39.6
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+...|.||++.-. ++...||. +..+..|+.+|++.+ +.+|++|+..+...
T Consensus 22 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc-CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 4578999987764 35567775 788999999999874 45899999988753
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.99 E-value=0.0028 Score=59.29 Aligned_cols=49 Identities=22% Similarity=0.657 Sum_probs=39.8
Q ss_pred CCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
...|.||++... ++...||. +..|..|+.+|+.. +..+|++|+..+...
T Consensus 332 ~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 368999987764 46778987 56799999999974 567999999998764
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.78 E-value=0.00054 Score=51.83 Aligned_cols=51 Identities=20% Similarity=0.517 Sum_probs=40.2
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+...|.||++.-. ++...||. +..+..|+.+|+.. ++..|++|++.+..
T Consensus 12 ~~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 445678999987764 45566876 78999999999964 45799999999875
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.46 E-value=0.0033 Score=43.49 Aligned_cols=51 Identities=18% Similarity=0.442 Sum_probs=37.6
Q ss_pred CCCCCeeeEeeecCCCCc-cccccccCCccce-ehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHK-MEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~-Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.+....|.||++...+.. +..||+ +. +=..|+.+|.+. +..|++|++++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 345678999998764422 234987 44 679999999864 3699999998754
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.14 E-value=0.0055 Score=42.48 Aligned_cols=50 Identities=22% Similarity=0.415 Sum_probs=36.3
Q ss_pred CCCCeeeEeeecCCCCcc-ccccccCCccce-ehHHHHHHHHHHhCCccccccceeeee
Q 027157 29 NERSECRVCQEEDFIHKM-EAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~L-i~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
++...|.||++...+..+ ..||+ +. .=..|+.+|.+. +..|++|++++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 456789999987754332 23987 44 348999999964 4589999998754
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.04 E-value=0.021 Score=41.62 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|-||++--. ++...||. +-.-+.|+++|+.. +.+|++|++.+..
T Consensus 11 ~p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT-DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc-CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 446789999977654 47788864 56789999999985 5699999988764
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.54 E-value=0.0033 Score=47.90 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCCCeeeEeeecCCCCcccc-ccccCCccceehHHHHHHHHHHhCCccccccceeee
Q 027157 29 NERSECRVCQEEDFIHKMEA-PCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~-PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~ 84 (227)
.+...|.||++.-.+ +... ||. +..++.|+.+|+. ..|++|+..+.
T Consensus 20 ~~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 356789999877643 4554 776 7889999999987 78999999874
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.40 E-value=0.022 Score=47.86 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=39.0
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.+.-.|-||++--. ++.+.||. +-.-+.|+.+|+..++.. |++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~-dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS-SEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhc-CCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 35678999977654 57888874 567799999999876544 9999988864
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.35 E-value=0.0079 Score=47.94 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=38.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDY 83 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y 83 (227)
..+.-.|.||++.-. ++...||. +..++.|+.+|++ ++..+|++|+++.
T Consensus 28 l~~~~~C~IC~~~~~-~pv~~~Cg-----H~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLR-RPFQAQCG-----HRYCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhc-CcEECCCC-----CccCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 456779999987664 35666766 7789999999996 4567999999865
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.11 E-value=0.0066 Score=42.95 Aligned_cols=45 Identities=20% Similarity=0.601 Sum_probs=36.2
Q ss_pred CCCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+...|.||++... ++...||. +. ....|+.+| ..|++|++.+...
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 4578999997764 45667986 66 899999999 7999999988654
No 58
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.09 E-value=0.022 Score=41.67 Aligned_cols=50 Identities=20% Similarity=0.482 Sum_probs=38.0
Q ss_pred CCCCeeeEeeecCCCCccc--cccccCCccceehHHHHHHHHHHh---C---Cccccc--cceee
Q 027157 29 NERSECRVCQEEDFIHKME--APCGCKGTIQFAHRKCIQKWCNAK---K---KMICEI--CHQDY 83 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li--~PC~CkGSlk~vH~~CL~rWl~~k---g---~~~CEI--Ck~~y 83 (227)
++..+|.||+++.....+. .||. +..-+.|+++++..+ | ..+|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3567899999886544444 3777 689999999999864 2 469999 99874
No 59
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.04 E-value=0.026 Score=48.98 Aligned_cols=51 Identities=18% Similarity=0.479 Sum_probs=39.5
Q ss_pred CCCeeeEeeecCCCCccccccc-cCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCG-CKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~-CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
....|-||.+--..+ .-|. |. .-.|..|+.+|++.+++..|+.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 578899998765432 2243 54 689999999999988889999999986543
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=93.69 E-value=0.034 Score=41.89 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=39.1
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|-||++--. ++...||. +-.-+.|+.+|+.. +.+|++|++++..
T Consensus 26 ~p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMT-DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCS-SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCccc-CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 456789999977654 47788864 56889999999973 5799999988764
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.68 E-value=0.028 Score=45.02 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=39.5
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|-||++.-. ++...||. +...+.|+.+|++.++. +|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc-CcEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 446678999987764 35666654 67899999999987654 99999988765
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.18 E-value=0.065 Score=37.58 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=36.5
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeeeeccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~~y~ 88 (227)
.++...|.||++... +....||. +. +-..|+++ ...|++|++.+.....
T Consensus 12 ~~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhceEE
Confidence 446789999988764 46778997 44 67789873 4799999998875433
No 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.34 E-value=0.016 Score=38.84 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=35.3
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
.+...|.||++... ++...||. +..++.|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~-~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB-CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC-CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 46678999988764 45677875 56789998873 6789999988764
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.48 E-value=0.13 Score=37.81 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=37.5
Q ss_pred CCCCCeeeEeeecCCCCccccc-cccCCccceehHHHHHHHHHHh----CCccccc--ccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAP-CGCKGTIQFAHRKCIQKWCNAK----KKMICEI--CHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~P-C~CkGSlk~vH~~CL~rWl~~k----g~~~CEI--Ck~~ 82 (227)
..+.-.|-||++.-. ++...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 4 ~~~~~~CPI~~~~~~-dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK-KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCS-SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhc-CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 346678999987654 477775 65 567899999999875 4679999 8866
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.36 E-value=0.065 Score=37.62 Aligned_cols=44 Identities=18% Similarity=0.588 Sum_probs=33.4
Q ss_pred CCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeeeec
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
...|.||++... ++...||. +. ....|++++ ..|++|++++...
T Consensus 25 ~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecCc
Confidence 467999988764 46667986 55 789998643 7999999988653
No 66
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.97 E-value=0.14 Score=38.31 Aligned_cols=51 Identities=6% Similarity=-0.069 Sum_probs=38.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|-||++--. ++...||. | +-.-+.|+++|+.. +.+|++|++++..
T Consensus 19 ~p~~~~CpI~~~~m~-dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC-DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCS-SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCcccccc-CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 345678999977654 46777765 1 45779999999975 5699999988764
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=90.70 E-value=0.1 Score=43.81 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=39.9
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~ 85 (227)
..+.-.|-||++--. +|.+.||. +-.=+.|+.+|+...+. +|++|+.++..
T Consensus 103 ip~~f~CPI~~elm~-DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred CcHhhcccCccccCC-CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 346678999977654 47777874 56789999999988665 79999988764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.80 E-value=0.13 Score=46.09 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCCCCeeeEeeecCCCCccc-cccccCCccceehHHHHHHHHHHhCCccccc--cceeeee
Q 027157 28 SNERSECRVCQEEDFIHKME-APCGCKGTIQFAHRKCIQKWCNAKKKMICEI--CHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li-~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEI--Ck~~y~~ 85 (227)
....-.|-||++--. .+.. ..|+ +-.=+.|+.+|+..++..+|++ |++.+..
T Consensus 178 ~~~el~CPIcl~~f~-DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYE-APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCS-SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCccc-CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345678999977543 2443 2454 5678999999998878899999 9998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.50 E-value=0.082 Score=48.24 Aligned_cols=45 Identities=24% Similarity=0.679 Sum_probs=36.3
Q ss_pred CCCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeeeec
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
+...|.||++... ++...||. +. ....|+.+| ..|++|+..+...
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 4578999988764 45666987 56 899999999 6999999998754
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=82.91 E-value=0.22 Score=35.72 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=35.1
Q ss_pred CCCeeeEeeecCCCCccccccccCCccce-ehHHHHHHHHHHhCCccccccceeeeeccc
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQF-AHRKCIQKWCNAKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~-vH~~CL~rWl~~kg~~~CEICk~~y~~~y~ 88 (227)
+...|.||++... +....||. +. .=..|+.+| ..|++|+..+.....
T Consensus 17 ~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCeEE
Confidence 3468999987664 46677987 34 557899887 399999999876543
No 71
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.63 E-value=0.33 Score=36.05 Aligned_cols=53 Identities=17% Similarity=0.384 Sum_probs=35.9
Q ss_pred CCCCCCeeeEeeecC--CCCccccccccCCccceehHHHHHHHHHHhCCcccccccee
Q 027157 27 VSNERSECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQD 82 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~ 82 (227)
...+...|.+|...+ +++.|+ -| .+=-..+|..|+.--..-++.+.|+.|...
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll-~C--D~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVIL-FC--DMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEE-EC--SSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEE-EC--CCCCchhhcccCCCCccCCCceECccccCc
Confidence 356778999998775 334443 23 333467899998643344688999999764
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=78.23 E-value=0.93 Score=31.11 Aligned_cols=47 Identities=4% Similarity=0.061 Sum_probs=32.8
Q ss_pred CeeeEeeecCCCCcccc-ccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 32 SECRVCQEEDFIHKMEA-PCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 32 ~~CRIC~ee~~e~~Li~-PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
-.|.||++--. ++.+. +|. .-.=+.|+++|+++.+ +|++++++....
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCGG
T ss_pred EEecCCCCCCC-CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCChh
Confidence 35777765443 35555 433 5678999999998765 599999887654
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.64 E-value=0.47 Score=33.59 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=35.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~ 82 (227)
+.....|.+|.+.+ .|+. |.+=-+..|..|+.-.+.. ++++.|+.|...
T Consensus 9 ~~~~~~C~vC~~~~---~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGT---DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCT---TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCC---eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 55677899997644 2431 3444589999999877765 478999999754
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.24 E-value=0.53 Score=33.78 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=35.2
Q ss_pred CCCCCeeeEeeecC--CCCccccccccCCccceehHHHHHHHHHHhCCcccccccee
Q 027157 28 SNERSECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~ 82 (227)
..+...|.+|.+.+ +++.|+. | .+=-+.+|..|+.--..-+|++.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~-C--D~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILF-C--DMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEE-C--SSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE-C--CCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 45678899998775 3344442 3 333468999998643344688999999753
No 75
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.48 E-value=0.81 Score=34.53 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCcccccc
Q 027157 27 VSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEIC 79 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEIC 79 (227)
...+...|.+|.+.++.++|+ -| .+=-+..|..||.-+... ++.+.|+-|
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcC
Confidence 355788999998877544554 23 444578999999876543 244444433
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.71 E-value=0.63 Score=32.89 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccceeee
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~y~ 84 (227)
++...|.+|...++++.|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45667999977765445553 4444489999998654432 26789999976543
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.35 E-value=0.95 Score=29.65 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=29.9
Q ss_pred eeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccce
Q 027157 33 ECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQ 81 (227)
Q Consensus 33 ~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~ 81 (227)
.|.+|...++++.|+. |.+=-+..|..|+.-=+.+ ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888987765555542 3344578999998532222 46788888864
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.75 E-value=14 Score=28.27 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCCCeeeEeeecC---CCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeec
Q 027157 28 SNERSECRVCQEED---FIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPG 86 (227)
Q Consensus 28 s~~~~~CRIC~ee~---~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~ 86 (227)
.....+|.||-++- .++.+..-|+=-+ --|=+.|.+-=. ..++..|+.||.+|+-.
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYEr-keG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYER-REGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHH-HTSCSSCTTTCCCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHH-hccCccccccCCccccc
Confidence 44668999998774 2344444454111 247788876544 44789999999999854
No 79
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.73 E-value=0.46 Score=35.19 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=39.4
Q ss_pred CCCCeeeEeeecCC--CCccccccccCCccceehHHHHHHHHH------HhCCccccccceeeeeccc
Q 027157 29 NERSECRVCQEEDF--IHKMEAPCGCKGTIQFAHRKCIQKWCN------AKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 29 ~~~~~CRIC~ee~~--e~~Li~PC~CkGSlk~vH~~CL~rWl~------~kg~~~CEICk~~y~~~y~ 88 (227)
+....|.+|...+. ++.|+. |.+=-+..|..|+.--+. .++.+.|..|....+..-+
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred CCCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcc
Confidence 35678999988763 345543 334347889999976554 3589999999887765433
No 80
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.58 E-value=0.99 Score=33.66 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHH--HhCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCN--AKKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~--~kg~~~CEICk~~ 82 (227)
..+...|.+|...++++.|+ -| .+=-+..|..||.-=+. -++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll-~C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLL-FC--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCE-EC--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEE-Ec--CCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 44567899998776544443 23 33347899999863222 2478899999764
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=50.76 E-value=3.3 Score=28.35 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=33.8
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~ 82 (227)
......|.+|...+ .|+. |.+=-+..|..|+..-+.+ ++++.|+.|.++
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45678899998743 3331 3444578999999864432 578999999754
No 82
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.24 E-value=2.3 Score=30.30 Aligned_cols=48 Identities=29% Similarity=0.798 Sum_probs=32.2
Q ss_pred CCCCCeeeEeeecCCCCccccccc---cCCccceehHHHHHHHHHH--hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCG---CKGTIQFAHRKCIQKWCNA--KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~---CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~ 82 (227)
+++...| ||..... +.|+. |. |. ..+.|..|+. +.. ++++.|+.|...
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~-CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIG-CDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEEC-CSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCC-CCEeE-eeCCCCC--CccEecccCC--cCcCCCCCEECCCCCcc
Confidence 5567788 8977654 45653 22 43 2689999997 433 378999999754
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.47 E-value=1.1 Score=30.06 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=30.3
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccce
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~ 81 (227)
+.....|.+|...+ .|+. |.+=-+..|..|+..-+.. ++.+.|..|..
T Consensus 6 ~~~~~~C~vC~~~g---~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS---CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC---eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 55678899998753 3331 3344578888887643322 46777877754
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=43.85 E-value=1.4 Score=33.08 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=30.9
Q ss_pred CCCCCeeeEeeecCCCCcccc--ccccCCccceehHHHHHHHHHHhCCccccc-cce
Q 027157 28 SNERSECRVCQEEDFIHKMEA--PCGCKGTIQFAHRKCIQKWCNAKKKMICEI-CHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~--PC~CkGSlk~vH~~CL~rWl~~kg~~~CEI-Ck~ 81 (227)
..+...| ||...+. +.|+. =|.|. ..+.|..|+.-=-..++++.|+. |..
T Consensus 23 ~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcc
Confidence 4566778 9977554 34552 23343 26899999862111247899999 874
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.39 E-value=13 Score=29.53 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=33.4
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHH------HH---HhCCccccccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKW------CN---AKKKMICEICH 80 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rW------l~---~kg~~~CEICk 80 (227)
++.+..||+|.++++ ++ -|++--+-.|.+|+.+= -+ .++++.|-.|.
T Consensus 54 Dg~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 456678999987653 33 23455689999999974 22 36889999993
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.90 E-value=11 Score=30.38 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=33.8
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHH---------HhCCccccccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCN---------AKKKMICEICH 80 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~---------~kg~~~CEICk 80 (227)
.+.+..|++|.++++ |. .|.+=-+-.|..||.+=+. ..+++.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 456789999987763 33 1233347899999997652 36899999995
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.98 E-value=24 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=36.1
Q ss_pred CCCCCeeeEeeecCC-CCccccccccCCccceehHHHHHHHHHHh---CCccccccceeeee
Q 027157 28 SNERSECRVCQEEDF-IHKMEAPCGCKGTIQFAHRKCIQKWCNAK---KKMICEICHQDYRP 85 (227)
Q Consensus 28 s~~~~~CRIC~ee~~-e~~Li~PC~CkGSlk~vH~~CL~rWl~~k---g~~~CEICk~~y~~ 85 (227)
..+...| ||....+ +..|+.==.|. .+.|..|+.-=-... ....|+.|.....+
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 4566677 8987653 45666433453 899999986433322 67899999876543
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=38.95 E-value=2 Score=29.37 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=35.0
Q ss_pred CCCCCeeeEeeecC--CCCccccccccCCccceehHHHHHHHHH-----HhCCcccccccee
Q 027157 28 SNERSECRVCQEED--FIHKMEAPCGCKGTIQFAHRKCIQKWCN-----AKKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~--~e~~Li~PC~CkGSlk~vH~~CL~rWl~-----~kg~~~CEICk~~ 82 (227)
+.+...|.+|...+ +++.|+. |.+=-+..|..|+.--+. .++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45778999998764 2344442 334447889999875332 4588999999754
No 89
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.55 E-value=4.1 Score=30.62 Aligned_cols=49 Identities=27% Similarity=0.676 Sum_probs=32.1
Q ss_pred CCCCCeeeEeeecCCCCcccc--ccccCCccceehHHHHHHHHHH--hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEA--PCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~--PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~ 82 (227)
+++...| ||..... +.|+. =|.|. ..+.|..|+. +.. ++++.|+.|...
T Consensus 33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4566778 9987654 34552 12243 2689999987 333 478999999754
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.74 E-value=11 Score=28.44 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCeeeEeeecCC------CCccccccccCCccceehHHHHHH
Q 027157 30 ERSECRVCQEEDF------IHKMEAPCGCKGTIQFAHRKCIQK 66 (227)
Q Consensus 30 ~~~~CRIC~ee~~------e~~Li~PC~CkGSlk~vH~~CL~r 66 (227)
....|.+|+..++ .++|+ .|.+=-+..|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 5678999987652 23455 3444457899999963
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.46 E-value=13 Score=26.11 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=34.0
Q ss_pred CCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHH-------HhCCccccccceeee
Q 027157 29 NERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCN-------AKKKMICEICHQDYR 84 (227)
Q Consensus 29 ~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~-------~kg~~~CEICk~~y~ 84 (227)
.....| ||.....+..|+.==.|. .+.|..|+.-=.. ......|+.|.....
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 345677 887776555676422443 8999999843221 246899999986543
No 92
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.83 E-value=9.2 Score=27.22 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=33.3
Q ss_pred CCCCCeeeEeeecCCCCccccccc---cCCccceehHHHHHHHHHH-------hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCG---CKGTIQFAHRKCIQKWCNA-------KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~---CkGSlk~vH~~CL~rWl~~-------kg~~~CEICk~~ 82 (227)
+++...| ||...++.+.|+. |. |+ .+.|..|+.-=-.. .....|+.|+..
T Consensus 13 ~~~~~~C-iC~~~~~~g~MI~-CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSLETDSMIQ-CEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCCCCSCEEE-CSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcCCCCCEEE-ECCccCC---ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 4577888 8988765566663 33 65 59999997532221 147889999764
No 93
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.00 E-value=7.4 Score=29.58 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred CeeeEeeecCCC-------CccccccccCCccceehHHHHHHHH
Q 027157 32 SECRVCQEEDFI-------HKMEAPCGCKGTIQFAHRKCIQKWC 68 (227)
Q Consensus 32 ~~CRIC~ee~~e-------~~Li~PC~CkGSlk~vH~~CL~rWl 68 (227)
..|.+|+..+.+ +.|+. | ++=-+..|..||..+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~-C--~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVS-C--ADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEE-C--SSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeE-e--CCCCCccchhhCCChh
Confidence 568899876521 24442 3 3333678999998663
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=34.51 E-value=2.3 Score=35.35 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=34.8
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccceeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQDYR 84 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~y~ 84 (227)
....|.+|..++ .++ .|.|--+..|..|+...+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g---~ll---~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLL---CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE---EEE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---ceE---EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 556799997654 233 25555688999998665543 57899999987644
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=33.21 E-value=19 Score=27.74 Aligned_cols=49 Identities=16% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHHhCCccccccceeeeeccc
Q 027157 31 RSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQDYRPGYQ 88 (227)
Q Consensus 31 ~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~~y~~~y~ 88 (227)
.--|+.|+.+.. .|+. |+ =+|.=.+||..-+.. ...|+||+++......
T Consensus 28 ~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~--SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSV--SNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSS--SSEETTTTEECCCCSC
T ss_pred cccChhhccccC--Ceee-ec----chhhHHHHHHHHHhh--ccCCcccCCcCCccee
Confidence 456888887764 4552 33 389999998877654 4599999999876643
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=32.39 E-value=13 Score=25.84 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCCCCeeeEeeecCCC-Ccccccc--ccCCccceehHHHHHHHH----H----HhCCccccccc
Q 027157 28 SNERSECRVCQEEDFI-HKMEAPC--GCKGTIQFAHRKCIQKWC----N----AKKKMICEICH 80 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e-~~Li~PC--~CkGSlk~vH~~CL~rWl----~----~kg~~~CEICk 80 (227)
++....|-+|.....+ ..++ -| .|+ ++.|..|+.-=- . .++...|+-|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI-~CD~~C~---~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAI-LCEASCQ---KWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEE-EBTTTTC---CEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeE-ecccCcc---ccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 5567789999887643 3443 35 354 899999973111 1 12356777775
No 97
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=29.56 E-value=4 Score=33.18 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=34.3
Q ss_pred CCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccceeee
Q 027157 30 ERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQDYR 84 (227)
Q Consensus 30 ~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~y~ 84 (227)
....|.+|.++++ ++ .|.|--+..|..|+.-.+.. +|.+.|..|...=+
T Consensus 3 ~~~~C~~C~~~g~---ll---~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---LL---CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---CE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---ee---ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4567999986543 32 24455588999998665543 57899999987643
No 98
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.47 E-value=3 Score=28.62 Aligned_cols=48 Identities=27% Similarity=0.672 Sum_probs=30.2
Q ss_pred CCCCCeeeEeeecCCCCcccc--ccccCCccceehHHHHHHHHHH--hCCccccccce
Q 027157 28 SNERSECRVCQEEDFIHKMEA--PCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~--PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~ 81 (227)
+++...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++++.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 4466777 8977654 45553 12242 2689999997 433 37889998865
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=29.10 E-value=10 Score=30.18 Aligned_cols=52 Identities=15% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCCCCeeeEeeecCC-CCccccccccCCccceehHHHHHHHHHH---hCCccccccceee
Q 027157 28 SNERSECRVCQEEDF-IHKMEAPCGCKGTIQFAHRKCIQKWCNA---KKKMICEICHQDY 83 (227)
Q Consensus 28 s~~~~~CRIC~ee~~-e~~Li~PC~CkGSlk~vH~~CL~rWl~~---kg~~~CEICk~~y 83 (227)
.++...| +|....+ ++.|+.=-.| -.+.|..|+.---.. .+...|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3467789 9987653 4556642244 489999999533222 4689999998653
No 100
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.68 E-value=18 Score=18.37 Aligned_cols=13 Identities=15% Similarity=0.687 Sum_probs=10.0
Q ss_pred Cccccccceeeee
Q 027157 73 KMICEICHQDYRP 85 (227)
Q Consensus 73 ~~~CEICk~~y~~ 85 (227)
...|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3579999988864
No 101
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=26.02 E-value=22 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.700 Sum_probs=11.8
Q ss_pred CccccccccCCcccee
Q 027157 44 HKMEAPCGCKGTIQFA 59 (227)
Q Consensus 44 ~~Li~PC~CkGSlk~v 59 (227)
+.--+||.|+|--.|-
T Consensus 8 naachpc~c~~rp~yc 23 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYC 23 (26)
T ss_dssp CSSCCTTTSTTCCGGG
T ss_pred CccccccccCCCCCcc
Confidence 4457899999876653
No 102
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=25.84 E-value=10 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHhCCccccccceeeeecccCCC
Q 027157 69 NAKKKMICEICHQDYRPGYQTPG 91 (227)
Q Consensus 69 ~~kg~~~CEICk~~y~~~y~~~~ 91 (227)
.+....+|..|++-|+..+..++
T Consensus 52 ~~g~~~RC~eCG~~fkL~~vg~~ 74 (80)
T 2odx_A 52 TVNEVARCWECGSVYKLNPVGVP 74 (80)
T ss_dssp CTTCEEECSSSCCEEEECCCC--
T ss_pred cCCCCeECCCCCeEEEEEEcCCC
Confidence 33445699999999999876554
No 103
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.65 E-value=20 Score=18.29 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.3
Q ss_pred Cccccccceeeee
Q 027157 73 KMICEICHQDYRP 85 (227)
Q Consensus 73 ~~~CEICk~~y~~ 85 (227)
...|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4579999998874
No 104
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.45 E-value=16 Score=18.58 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=10.5
Q ss_pred ccccccceeeeec
Q 027157 74 MICEICHQDYRPG 86 (227)
Q Consensus 74 ~~CEICk~~y~~~ 86 (227)
..|+.|++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4799999998754
No 105
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.23 E-value=4.1 Score=28.24 Aligned_cols=50 Identities=26% Similarity=0.586 Sum_probs=29.8
Q ss_pred CCCCCeeeEeeecCCCCcccc--ccccCCccceehHHHHHHHHHHhCCccccccce
Q 027157 28 SNERSECRVCQEEDFIHKMEA--PCGCKGTIQFAHRKCIQKWCNAKKKMICEICHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~--PC~CkGSlk~vH~~CL~rWl~~kg~~~CEICk~ 81 (227)
+++...| +|...+. +.|+. -|.|+ ..+.|..|+.-=-..++++.|+.|..
T Consensus 8 ~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCCcCcCCCCCEECcCccc
Confidence 4466777 8977643 35653 12243 27999999872111236788988864
No 106
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.74 E-value=24 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.971 Sum_probs=10.0
Q ss_pred ccccccceeeeec
Q 027157 74 MICEICHQDYRPG 86 (227)
Q Consensus 74 ~~CEICk~~y~~~ 86 (227)
..|++|+..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 5799999888653
No 107
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.56 E-value=25 Score=18.15 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=10.7
Q ss_pred Cccccccceeeeec
Q 027157 73 KMICEICHQDYRPG 86 (227)
Q Consensus 73 ~~~CEICk~~y~~~ 86 (227)
...|+.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 3 PYRCPLCRAGCPSL 16 (27)
T ss_dssp TEEETTTTEEESCH
T ss_pred CcCCCCCCcccCCH
Confidence 35799999998753
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.28 E-value=13 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=29.5
Q ss_pred CCCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCcccccc
Q 027157 27 VSNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEIC 79 (227)
Q Consensus 27 ~s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEIC 79 (227)
+..++..|.+|.+.+ .|+ -|..++--+..|..||. +.+ +|++.|+-|
T Consensus 11 ~~~~~~~C~~C~~~G---~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 11 KQMHEDYCFQCGDGG---ELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp CCSSCSSCTTTCCCS---EEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred cCCCCCCCCcCCCCC---cEe-EECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 456778899998433 333 36522334799999997 433 366666644
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.16 E-value=25 Score=26.11 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=30.8
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHH-HhCCccccccc
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCN-AKKKMICEICH 80 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~-~kg~~~CEICk 80 (227)
..+...| ||...++++.|+. |.+=-.+.|..|+.-=.. ..+.+.|+.|+
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 4455678 8877666667764 333358999999743111 12467888885
No 110
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.99 E-value=20 Score=18.07 Aligned_cols=13 Identities=15% Similarity=0.682 Sum_probs=9.8
Q ss_pred ccccccceeeeec
Q 027157 74 MICEICHQDYRPG 86 (227)
Q Consensus 74 ~~CEICk~~y~~~ 86 (227)
..|+.|+..|...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 3689999888653
No 111
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.88 E-value=24 Score=18.00 Aligned_cols=14 Identities=14% Similarity=0.596 Sum_probs=10.7
Q ss_pred Cccccccceeeeec
Q 027157 73 KMICEICHQDYRPG 86 (227)
Q Consensus 73 ~~~CEICk~~y~~~ 86 (227)
...|+.|++.|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 3 PYSCSVCGKRFSLK 16 (28)
T ss_dssp SEECSSSCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 35799999988754
No 112
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.33 E-value=11 Score=28.26 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCcccccccee
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQD 82 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~~ 82 (227)
......|.+|...+ .|+ .|.+=-+-.|..|+.-=+.+ ++.+.|..|...
T Consensus 22 d~n~~~C~vC~~~g---~LL---~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG---DLV---MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS---CCE---ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC---CEE---ECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44677899998654 233 25555688999998544432 478999999754
No 113
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.13 E-value=5.3 Score=27.31 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=30.4
Q ss_pred CCCCCeeeEeeecCCCCccccccccCCccceehHHHHHHHHHH--hCCccccccce
Q 027157 28 SNERSECRVCQEEDFIHKMEAPCGCKGTIQFAHRKCIQKWCNA--KKKMICEICHQ 81 (227)
Q Consensus 28 s~~~~~CRIC~ee~~e~~Li~PC~CkGSlk~vH~~CL~rWl~~--kg~~~CEICk~ 81 (227)
......|.+|.+.+ .|+ .|.+=-+..|..|+.--+.+ ++++.|..|..
T Consensus 6 d~~~~~C~vC~~~g---~ll---~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG---ELL---CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp CSSCSSCTTTCCCS---SCB---CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred cCCCCcCCCCCCCC---CEE---EcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 34667899997643 232 13344467899998743332 46788888864
No 114
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.05 E-value=31 Score=17.43 Aligned_cols=14 Identities=14% Similarity=0.607 Sum_probs=10.5
Q ss_pred Cccccccceeeeec
Q 027157 73 KMICEICHQDYRPG 86 (227)
Q Consensus 73 ~~~CEICk~~y~~~ 86 (227)
...|+.|+..|...
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 35799999988743
Done!