BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027158
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 6 LDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 62
+D+A D + LQ FP++ L L E KG AEAE Y++ L P
Sbjct: 253 IDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 122
I + QGN A+ K LE F A LA + ++A Y+E I
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 123 PTVPLYHLAYADVLYTLGGV 142
PT +AD +G
Sbjct: 370 PT-------FADAYSNMGNT 382
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80
PE RLEG K W A KAY+ +++ P D + R A +FP AI
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 81 LNKYLE 86
NK +E
Sbjct: 196 CNKAIE 201
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 97
G + +A +A++ +E+N D + + + + A+ + +K LE + A+
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYYA 153
+YV +MYK+A +E+ + + + D+ Y LG V + LA Y
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 154 STIDLT-GGKNTKALFGICLCSSAI 177
++L + FG+CL + +
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGM 174
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86
RLEG K W A KAY+ +++ P D + R A +FP AI NK +E
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 89 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140
M+ + +E +Y++A CY++LI +QP P+ + A L LG
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG 52
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TF 88
+G L +GL+ EA Y L+ P +PV + + G + AI+ + L T
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 89 MADHDAWR 96
A+H A R
Sbjct: 70 TAEHVAIR 77
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
QG++ AIE+ K LE + + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN----- 76
Query: 131 AYADVLYTLGGV 142
A+ Y LG
Sbjct: 77 --AEAWYNLGNA 86
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124
QG++ AIE+ K LE + + +AW L Y Y +A Y++ + P
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
+GNFP AI++ K + D + EL + Y + Y +A + +++ +P + + +L
Sbjct: 121 KGNFPLAIQYXEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHD 93
+G + EA + Y LE LDP + + A QG++ AIE+ K LE + +
Sbjct: 22 QGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPT 124
AW L Y Y +A Y++ + P
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130
QG++ AIE+ K LE + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----- 76
Query: 131 AYADVLYTLGGV 142
A+ Y LG
Sbjct: 77 --AEAWYNLGNA 86
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 146
TF+ +HD R+ VS+ K A+ Y ++ VP + + G+D +L
Sbjct: 441 TFVDNHDTDRDEGSYTVSIYSRKYQAYAY--ILTRAEGVPTVYWKDYYIWEMKEGLDKLL 498
Query: 147 LAKKYYA 153
A++YYA
Sbjct: 499 TARRYYA 505
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126
I + QGN A+ K LE F A LA + ++A Y+E I PT
Sbjct: 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-- 75
Query: 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159
+ AY+++ TL + ++ A + Y I +
Sbjct: 76 -FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83
KRV RL G L +GL E + Y L + KR IAK G + T WLN
Sbjct: 333 KRVERLIGRLRFNEGLRFEVDLPYVDFL-------LRVKRSEEIAKENGTWETPHPWLNL 385
Query: 84 YL 85
++
Sbjct: 386 FV 387
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 44 EKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPT----------AIEWLNKYLETFMADH 92
E+A SS L+D P +L R AK + NFPT I W++K L
Sbjct: 184 EQAVSSELKD-PASSILDIERKVTAKMRADNFPTDNFGAALGGSLIPWIDKLLPETGQTK 242
Query: 93 DAWRELAE 100
D W+ AE
Sbjct: 243 DEWKGYAE 250
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 44 EKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPT----------AIEWLNKYLETFMADH 92
E+A SS L+D P +L R AK + NFPT I W++K L
Sbjct: 184 EQAVSSELKD-PASSILDIERKVTAKMRADNFPTDNFGAALGGSLIPWIDKLLPETGQTK 242
Query: 93 DAWRELAE 100
+ WR AE
Sbjct: 243 EEWRGYAE 250
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 18 KQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 67
++F +++ VG+ E L G W +A Y S +E NP P L R++ +
Sbjct: 24 EEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVM 78
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 14/49 (28%)
Query: 114 CYEELIL---SQPTVPLYHLAYADVLYTLG-----------GVDNILLA 148
C+E L L PT+P+ L YA++++ G GVD++L+A
Sbjct: 81 CFEMLALIREKHPTIPIGLLMYANLVFNKGIDEFYARCEKVGVDSVLVA 129
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 14/49 (28%)
Query: 114 CYEELIL---SQPTVPLYHLAYADVLYTLG-----------GVDNILLA 148
C+E L L PT+P+ L YA++++ G GVD++L+A
Sbjct: 81 CFEMLALIRQKHPTIPIGLLMYANLVFNKGIDEFYAQCEKVGVDSVLVA 129
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHD 93
+G + EA + Y LE LDP + + A QG++ AIE+ K LE +
Sbjct: 14 QGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 142
AW L Y Y +A Y++ + P A+ Y LG
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNA 112
>pdb|2XA0|A Chain A, Crystal Structure Of Bcl-2 In Complex With A Bax Bh3
Peptide
pdb|2XA0|B Chain B, Crystal Structure Of Bcl-2 In Complex With A Bax Bh3
Peptide
Length = 207
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 79 EWLNKYLETFMADHDAWRELAEIY 102
E+LN++L T++ D+ W E+Y
Sbjct: 179 EYLNRHLHTWIQDNGGWDAFVELY 202
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124
QG++ AIE+ K LE + AW L Y Y++A Y++ + P
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 71 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124
QG++ AIE+ K LE + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 39
+ +D K IK+ ++ FPE G++ ++E KGL
Sbjct: 381 KLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKGL 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,110,117
Number of Sequences: 62578
Number of extensions: 236647
Number of successful extensions: 827
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 59
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)