Query 027158
Match_columns 227
No_of_seqs 349 out of 2779
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3060 Uncharacterized conser 100.0 4.6E-30 9.9E-35 184.3 23.6 224 1-226 63-288 (289)
2 KOG4626 O-linked N-acetylgluco 99.9 2.2E-25 4.9E-30 177.9 15.1 211 7-221 269-483 (966)
3 KOG4626 O-linked N-acetylgluco 99.9 3E-24 6.4E-29 171.6 19.0 173 3-179 333-505 (966)
4 TIGR00990 3a0801s09 mitochondr 99.9 9E-22 2E-26 166.6 21.9 175 4-182 308-485 (615)
5 TIGR00990 3a0801s09 mitochondr 99.9 5E-21 1.1E-25 162.1 26.1 157 2-161 343-499 (615)
6 PRK12370 invasion protein regu 99.9 1.8E-21 3.9E-26 162.5 21.3 176 4-182 275-459 (553)
7 KOG1126 DNA-binding cell divis 99.9 2.5E-22 5.4E-27 161.4 13.6 174 4-181 435-608 (638)
8 COG3063 PilF Tfp pilus assembl 99.9 5.4E-21 1.2E-25 136.2 18.3 175 1-179 46-222 (250)
9 KOG1125 TPR repeat-containing 99.9 1.6E-21 3.5E-26 154.6 16.2 178 1-182 296-516 (579)
10 TIGR02521 type_IV_pilW type IV 99.9 3.2E-20 6.9E-25 138.3 22.4 174 2-179 43-218 (234)
11 KOG1126 DNA-binding cell divis 99.9 5.9E-22 1.3E-26 159.3 12.0 196 14-213 411-608 (638)
12 KOG1155 Anaphase-promoting com 99.9 3.2E-20 6.9E-25 144.0 19.8 152 4-158 344-495 (559)
13 KOG1155 Anaphase-promoting com 99.9 2.2E-20 4.7E-25 144.9 18.8 177 2-182 274-484 (559)
14 PRK12370 invasion protein regu 99.9 6.9E-20 1.5E-24 153.0 21.9 171 4-178 318-489 (553)
15 PRK09782 bacteriophage N4 rece 99.9 2.2E-19 4.7E-24 156.5 22.9 155 3-161 555-709 (987)
16 PRK11189 lipoprotein NlpI; Pro 99.8 1.3E-18 2.8E-23 134.6 23.1 122 5-126 41-166 (296)
17 PRK15174 Vi polysaccharide exp 99.8 8.3E-19 1.8E-23 148.9 24.0 156 3-161 225-384 (656)
18 PRK15174 Vi polysaccharide exp 99.8 1.7E-18 3.6E-23 147.1 24.3 175 3-181 190-369 (656)
19 PRK11447 cellulose synthase su 99.8 4.9E-19 1.1E-23 159.1 21.9 177 2-182 281-513 (1157)
20 PRK15359 type III secretion sy 99.8 2.9E-19 6.2E-24 123.6 15.0 126 10-138 13-138 (144)
21 PRK09782 bacteriophage N4 rece 99.8 1.3E-18 2.8E-23 151.7 22.0 175 2-182 521-695 (987)
22 PRK11788 tetratricopeptide rep 99.8 7E-18 1.5E-22 135.7 22.9 177 2-182 47-232 (389)
23 COG3063 PilF Tfp pilus assembl 99.8 2.4E-18 5.1E-23 122.8 16.7 148 25-176 36-185 (250)
24 TIGR02917 PEP_TPR_lipo putativ 99.8 4E-18 8.8E-23 149.5 22.0 175 2-182 681-855 (899)
25 TIGR02917 PEP_TPR_lipo putativ 99.8 4.7E-18 1E-22 149.1 22.0 174 3-180 478-651 (899)
26 PRK15359 type III secretion sy 99.8 2.2E-18 4.7E-23 119.2 15.8 127 44-177 13-139 (144)
27 PRK11447 cellulose synthase su 99.8 6.5E-18 1.4E-22 151.9 23.1 177 2-182 473-689 (1157)
28 PLN02789 farnesyltranstransfer 99.8 1.4E-17 3E-22 129.0 20.8 173 3-176 50-229 (320)
29 TIGR03302 OM_YfiO outer membra 99.8 8.1E-18 1.8E-22 126.3 18.5 158 22-182 31-221 (235)
30 KOG0547 Translocase of outer m 99.8 9.4E-18 2E-22 131.2 18.2 174 4-181 374-554 (606)
31 PF13429 TPR_15: Tetratricopep 99.8 1.5E-18 3.2E-23 133.7 13.2 179 2-185 89-269 (280)
32 TIGR02521 type_IV_pilW type IV 99.8 3.6E-17 7.8E-22 121.8 20.2 156 2-160 77-234 (234)
33 PRK11788 tetratricopeptide rep 99.8 2.8E-17 6.1E-22 132.2 21.1 155 3-160 82-245 (389)
34 PF13429 TPR_15: Tetratricopep 99.8 4.8E-18 1E-22 130.8 13.8 150 4-156 124-275 (280)
35 KOG0547 Translocase of outer m 99.8 1.3E-17 2.9E-22 130.4 15.9 156 3-161 339-494 (606)
36 PRK10370 formate-dependent nit 99.8 6.5E-17 1.4E-21 117.6 18.5 122 37-161 52-176 (198)
37 PRK10370 formate-dependent nit 99.8 4.9E-17 1.1E-21 118.2 17.6 125 3-127 52-179 (198)
38 PRK15179 Vi polysaccharide bio 99.8 2.3E-16 5E-21 133.2 22.8 157 7-167 69-225 (694)
39 KOG1173 Anaphase-promoting com 99.8 2.2E-16 4.7E-21 125.5 20.0 153 6-161 362-521 (611)
40 TIGR03302 OM_YfiO outer membra 99.8 1.7E-16 3.7E-21 119.1 18.6 156 2-160 45-234 (235)
41 TIGR02552 LcrH_SycD type III s 99.7 2.6E-16 5.7E-21 108.0 16.6 114 45-161 4-117 (135)
42 TIGR02552 LcrH_SycD type III s 99.7 2.3E-16 5E-21 108.3 14.8 119 11-129 4-122 (135)
43 KOG1173 Anaphase-promoting com 99.7 2.5E-16 5.4E-21 125.2 16.2 177 3-183 325-508 (611)
44 PRK10049 pgaA outer membrane p 99.7 2.9E-15 6.2E-20 129.8 24.2 176 2-181 249-444 (765)
45 PRK10049 pgaA outer membrane p 99.7 9.7E-16 2.1E-20 132.7 20.3 153 3-160 28-180 (765)
46 KOG1125 TPR repeat-containing 99.7 1.6E-16 3.5E-21 126.6 13.6 155 4-161 333-530 (579)
47 KOG0553 TPR repeat-containing 99.7 2.8E-16 6.1E-21 116.5 13.3 115 27-141 84-198 (304)
48 COG5010 TadD Flp pilus assembl 99.7 1.4E-15 3E-20 110.8 16.4 172 7-183 50-221 (257)
49 PLN02789 farnesyltranstransfer 99.7 4E-15 8.7E-20 115.4 19.3 171 5-176 87-267 (320)
50 PRK11189 lipoprotein NlpI; Pro 99.7 3.6E-15 7.8E-20 115.4 17.6 125 36-164 38-166 (296)
51 PRK14574 hmsH outer membrane p 99.7 9.3E-15 2E-19 125.7 20.7 173 2-179 46-218 (822)
52 COG5010 TadD Flp pilus assembl 99.7 7.2E-15 1.6E-19 107.1 16.7 151 3-156 79-229 (257)
53 KOG1129 TPR repeat-containing 99.7 5.1E-16 1.1E-20 116.4 10.5 170 5-178 271-443 (478)
54 KOG1129 TPR repeat-containing 99.7 3.7E-16 7.9E-21 117.2 9.6 164 3-170 303-469 (478)
55 KOG2002 TPR-containing nuclear 99.7 9.4E-15 2E-19 122.6 17.8 176 3-181 177-359 (1018)
56 PRK15363 pathogenicity island 99.7 5.2E-15 1.1E-19 101.1 13.5 107 51-160 27-134 (157)
57 KOG0553 TPR repeat-containing 99.7 2.6E-15 5.6E-20 111.4 12.9 119 59-181 82-200 (304)
58 KOG0550 Molecular chaperone (D 99.6 1.1E-14 2.4E-19 112.1 15.4 156 3-161 182-353 (486)
59 PRK10747 putative protoheme IX 99.6 3.4E-14 7.3E-19 114.5 19.0 170 2-179 165-376 (398)
60 KOG0495 HAT repeat protein [RN 99.6 8.4E-14 1.8E-18 112.9 20.7 172 3-178 664-865 (913)
61 KOG2003 TPR repeat-containing 99.6 1.2E-14 2.7E-19 113.5 15.3 170 4-177 504-707 (840)
62 COG2956 Predicted N-acetylgluc 99.6 6.8E-14 1.5E-18 104.8 18.4 175 3-181 48-266 (389)
63 KOG2076 RNA polymerase III tra 99.6 1.4E-13 3E-18 114.9 21.7 153 3-158 152-309 (895)
64 PRK15363 pathogenicity island 99.6 2.4E-14 5.1E-19 97.9 14.3 110 16-125 26-136 (157)
65 KOG1174 Anaphase-promoting com 99.6 5.8E-14 1.3E-18 108.4 17.4 172 2-178 312-519 (564)
66 PLN03088 SGT1, suppressor of 99.6 2.7E-14 5.8E-19 113.1 16.1 113 27-139 5-117 (356)
67 KOG2002 TPR-containing nuclear 99.6 1E-13 2.2E-18 116.5 20.0 173 2-178 211-390 (1018)
68 KOG1840 Kinesin light chain [C 99.6 8.1E-14 1.8E-18 113.1 18.9 174 3-179 212-424 (508)
69 KOG2003 TPR repeat-containing 99.6 7.8E-14 1.7E-18 109.1 17.7 151 3-157 537-721 (840)
70 TIGR00540 hemY_coli hemY prote 99.6 1.3E-13 2.8E-18 111.6 19.6 173 2-179 165-385 (409)
71 cd05804 StaR_like StaR_like; a 99.6 7.7E-14 1.7E-18 111.0 17.2 154 3-160 56-217 (355)
72 KOG3060 Uncharacterized conser 99.6 7.6E-14 1.7E-18 101.2 15.2 139 3-141 99-240 (289)
73 KOG0624 dsRNA-activated protei 99.6 1.6E-13 3.5E-18 103.8 17.6 172 3-178 168-389 (504)
74 PRK15179 Vi polysaccharide bio 99.6 4.2E-13 9.2E-18 113.6 21.7 138 41-182 69-206 (694)
75 KOG0624 dsRNA-activated protei 99.6 4.4E-13 9.4E-18 101.5 19.2 176 3-182 51-241 (504)
76 PLN03088 SGT1, suppressor of 99.6 8.7E-14 1.9E-18 110.2 16.3 116 61-180 5-120 (356)
77 KOG2076 RNA polymerase III tra 99.6 2.5E-13 5.4E-18 113.4 19.3 134 25-161 140-273 (895)
78 COG2956 Predicted N-acetylgluc 99.6 1.8E-13 4E-18 102.5 16.7 157 2-161 119-281 (389)
79 KOG0548 Molecular co-chaperone 99.6 4.8E-13 1E-17 106.2 19.7 121 53-177 353-473 (539)
80 KOG0495 HAT repeat protein [RN 99.6 2.3E-13 4.9E-18 110.5 17.6 172 3-179 597-768 (913)
81 PRK14574 hmsH outer membrane p 99.6 1.7E-12 3.7E-17 111.9 22.4 147 12-161 22-168 (822)
82 cd05804 StaR_like StaR_like; a 99.6 6.9E-13 1.5E-17 105.5 17.8 175 3-181 19-203 (355)
83 COG4783 Putative Zn-dependent 99.5 5.4E-13 1.2E-17 105.0 16.5 137 21-160 303-439 (484)
84 KOG1156 N-terminal acetyltrans 99.5 1.3E-12 2.9E-17 105.8 19.0 155 2-159 19-173 (700)
85 KOG0548 Molecular co-chaperone 99.5 2.6E-13 5.6E-18 107.7 14.6 146 6-154 340-485 (539)
86 KOG0550 Molecular chaperone (D 99.5 4.1E-13 8.9E-18 103.6 14.5 156 23-182 168-339 (486)
87 PRK14720 transcript cleavage f 99.5 9.2E-13 2E-17 112.9 18.0 168 2-176 43-269 (906)
88 KOG1840 Kinesin light chain [C 99.5 5.3E-13 1.2E-17 108.4 15.8 177 2-181 253-467 (508)
89 PRK10747 putative protoheme IX 99.5 2.2E-12 4.7E-17 104.0 18.9 173 3-182 131-346 (398)
90 COG4783 Putative Zn-dependent 99.5 2.6E-12 5.6E-17 101.3 18.4 137 3-159 319-455 (484)
91 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.4E-16 98.3 23.6 157 2-161 96-295 (409)
92 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.9E-12 4.1E-17 86.6 14.0 102 26-127 4-111 (119)
93 PRK10866 outer membrane biogen 99.5 1.3E-11 2.8E-16 92.6 19.8 154 23-179 31-227 (243)
94 PF13525 YfiO: Outer membrane 99.5 9.3E-12 2E-16 91.2 17.7 154 23-179 4-193 (203)
95 KOG4162 Predicted calmodulin-b 99.5 9.3E-13 2E-17 108.5 13.5 135 24-161 650-786 (799)
96 KOG1174 Anaphase-promoting com 99.5 4.4E-12 9.5E-17 98.2 16.0 171 7-181 215-385 (564)
97 PF13525 YfiO: Outer membrane 99.5 9.1E-12 2E-16 91.2 17.0 144 2-148 17-197 (203)
98 cd00189 TPR Tetratricopeptide 99.5 1.8E-12 3.8E-17 82.5 11.8 97 61-160 3-99 (100)
99 COG4235 Cytochrome c biogenesi 99.5 5.3E-12 1.1E-16 94.5 15.7 123 39-164 137-262 (287)
100 COG4235 Cytochrome c biogenesi 99.5 8.6E-12 1.9E-16 93.4 16.8 123 5-127 137-262 (287)
101 cd00189 TPR Tetratricopeptide 99.5 2.1E-12 4.5E-17 82.1 12.0 99 26-124 2-100 (100)
102 KOG1156 N-terminal acetyltrans 99.5 1.7E-11 3.6E-16 99.6 19.5 169 3-175 54-264 (700)
103 TIGR02795 tol_pal_ybgF tol-pal 99.5 6.6E-12 1.4E-16 83.9 14.5 103 58-164 2-110 (119)
104 KOG4162 Predicted calmodulin-b 99.5 3.5E-12 7.7E-17 105.1 15.3 125 3-127 663-789 (799)
105 KOG1127 TPR repeat-containing 99.5 7E-12 1.5E-16 106.0 17.3 171 5-179 473-645 (1238)
106 PF13414 TPR_11: TPR repeat; P 99.5 7.1E-13 1.5E-17 79.9 8.5 65 59-123 4-69 (69)
107 PF13414 TPR_11: TPR repeat; P 99.5 7.5E-13 1.6E-17 79.8 8.4 68 90-160 1-69 (69)
108 PRK02603 photosystem I assembl 99.5 1E-11 2.2E-16 88.7 15.6 117 22-161 33-152 (172)
109 CHL00033 ycf3 photosystem I as 99.4 9.3E-12 2E-16 88.6 14.7 119 40-161 15-152 (168)
110 PF09976 TPR_21: Tetratricopep 99.4 6.7E-12 1.5E-16 87.1 13.4 118 35-156 22-145 (145)
111 CHL00033 ycf3 photosystem I as 99.4 1.3E-11 2.7E-16 87.9 14.8 121 6-126 15-154 (168)
112 PRK11906 transcriptional regul 99.4 3E-11 6.5E-16 95.7 17.8 151 6-159 274-437 (458)
113 PF09976 TPR_21: Tetratricopep 99.4 3.3E-11 7.3E-16 83.6 16.2 117 2-119 23-145 (145)
114 PRK10866 outer membrane biogen 99.4 9.7E-11 2.1E-15 87.9 19.7 149 2-153 44-236 (243)
115 KOG1128 Uncharacterized conser 99.4 1.8E-11 3.8E-16 100.7 16.1 155 3-161 437-619 (777)
116 PRK14720 transcript cleavage f 99.4 6E-11 1.3E-15 102.0 19.8 135 20-160 27-180 (906)
117 PRK10153 DNA-binding transcrip 99.4 5.5E-11 1.2E-15 98.1 18.9 139 19-161 332-485 (517)
118 KOG1127 TPR repeat-containing 99.4 5.3E-12 1.2E-16 106.7 12.9 171 5-179 507-679 (1238)
119 PF12895 Apc3: Anaphase-promot 99.4 3.2E-12 7E-17 80.1 8.1 81 71-155 2-84 (84)
120 PRK02603 photosystem I assembl 99.4 2.8E-11 6.1E-16 86.4 13.7 100 54-156 31-133 (172)
121 PRK10153 DNA-binding transcrip 99.4 2.6E-11 5.6E-16 100.0 14.9 124 4-128 356-489 (517)
122 KOG0543 FKBP-type peptidyl-pro 99.4 4.2E-11 9.1E-16 92.8 14.8 131 27-160 211-357 (397)
123 PF12895 Apc3: Anaphase-promot 99.4 3.4E-12 7.3E-17 80.0 7.2 81 37-118 2-84 (84)
124 PF12569 NARP1: NMDA receptor- 99.4 2.8E-10 6.1E-15 93.6 20.2 157 2-161 16-260 (517)
125 PF13432 TPR_16: Tetratricopep 99.4 4.1E-12 8.8E-17 75.6 6.9 57 67-123 6-62 (65)
126 PRK10803 tol-pal system protei 99.4 1.1E-10 2.4E-15 88.2 16.2 100 59-161 143-249 (263)
127 PF13432 TPR_16: Tetratricopep 99.3 1.2E-11 2.6E-16 73.5 8.1 65 28-92 1-65 (65)
128 PRK15331 chaperone protein Sic 99.3 6.9E-11 1.5E-15 81.4 12.3 102 54-158 33-134 (165)
129 PF04733 Coatomer_E: Coatomer 99.3 3.4E-11 7.3E-16 92.5 12.1 149 23-180 101-251 (290)
130 PRK11906 transcriptional regul 99.3 3.4E-10 7.3E-15 89.9 17.2 131 28-161 259-404 (458)
131 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.3E-10 2.9E-15 92.1 15.0 120 31-156 176-295 (395)
132 KOG1128 Uncharacterized conser 99.3 6.1E-11 1.3E-15 97.5 13.1 166 3-181 411-604 (777)
133 PLN03218 maturation of RBCL 1; 99.3 1.3E-09 2.9E-14 96.7 22.3 170 3-176 592-766 (1060)
134 PRK15331 chaperone protein Sic 99.3 1E-10 2.2E-15 80.5 12.1 104 22-126 35-138 (165)
135 PRK10803 tol-pal system protei 99.3 2.6E-10 5.6E-15 86.3 14.6 104 25-128 143-253 (263)
136 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 4.1E-10 8.9E-15 89.4 16.3 114 3-119 182-295 (395)
137 PLN03218 maturation of RBCL 1; 99.3 2.2E-09 4.8E-14 95.4 22.3 172 4-179 556-734 (1060)
138 PF12688 TPR_5: Tetratrico pep 99.3 5.4E-10 1.2E-14 74.1 13.9 97 24-120 1-103 (120)
139 KOG0543 FKBP-type peptidyl-pro 99.3 3.3E-10 7.1E-15 87.9 14.7 118 60-181 210-342 (397)
140 PF12569 NARP1: NMDA receptor- 99.2 6E-09 1.3E-13 85.8 20.8 118 59-179 195-320 (517)
141 PF04733 Coatomer_E: Coatomer 99.2 1.1E-10 2.4E-15 89.7 9.9 151 3-161 115-268 (290)
142 PF14559 TPR_19: Tetratricopep 99.2 7.1E-11 1.5E-15 70.8 7.0 64 70-133 3-66 (68)
143 COG4785 NlpI Lipoprotein NlpI, 99.2 4.6E-10 9.9E-15 80.2 11.9 154 3-160 78-268 (297)
144 PLN03081 pentatricopeptide (PP 99.2 1.4E-09 3.1E-14 94.0 16.6 164 3-175 272-437 (697)
145 PF14938 SNAP: Soluble NSF att 99.2 2.9E-09 6.2E-14 82.1 15.8 150 26-179 37-211 (282)
146 PF14559 TPR_19: Tetratricopep 99.2 1.7E-10 3.7E-15 69.1 6.7 66 35-100 2-67 (68)
147 PF14938 SNAP: Soluble NSF att 99.2 7.4E-09 1.6E-13 79.8 17.4 155 3-161 48-228 (282)
148 PF13371 TPR_9: Tetratricopept 99.1 4.8E-10 1E-14 68.2 8.6 65 66-130 3-67 (73)
149 PF12688 TPR_5: Tetratrico pep 99.1 3.1E-09 6.7E-14 70.5 12.9 97 59-158 2-104 (120)
150 PLN03081 pentatricopeptide (PP 99.1 5.1E-09 1.1E-13 90.6 17.8 149 3-157 303-454 (697)
151 KOG1915 Cell cycle control pro 99.1 4.3E-08 9.3E-13 77.8 20.9 164 2-171 378-547 (677)
152 KOG2376 Signal recognition par 99.1 5.6E-09 1.2E-13 84.4 16.0 150 2-158 24-204 (652)
153 KOG3785 Uncharacterized conser 99.1 3E-08 6.6E-13 76.1 18.7 157 2-161 34-217 (557)
154 KOG4340 Uncharacterized conser 99.1 3.1E-09 6.8E-14 79.6 13.0 153 4-159 24-208 (459)
155 COG4105 ComL DNA uptake lipopr 99.1 4.3E-08 9.3E-13 72.3 18.6 157 1-161 45-235 (254)
156 PF13512 TPR_18: Tetratricopep 99.1 1.2E-08 2.5E-13 69.0 13.9 104 23-126 9-133 (142)
157 PF13371 TPR_9: Tetratricopept 99.1 1.3E-09 2.8E-14 66.3 8.5 69 31-99 2-70 (73)
158 KOG1130 Predicted G-alpha GTPa 99.1 2E-09 4.3E-14 83.9 11.0 177 3-182 108-333 (639)
159 COG1729 Uncharacterized protei 99.1 1.4E-08 3.1E-13 75.4 14.8 98 61-161 144-247 (262)
160 KOG4234 TPR repeat-containing 99.1 5E-09 1.1E-13 74.1 11.8 96 63-161 100-200 (271)
161 KOG2376 Signal recognition par 99.1 9E-08 1.9E-12 77.7 20.1 167 2-182 58-273 (652)
162 KOG4234 TPR repeat-containing 99.1 1E-08 2.2E-13 72.5 12.8 114 27-140 98-216 (271)
163 PLN03077 Protein ECB2; Provisi 99.0 2.2E-08 4.7E-13 88.7 18.1 166 3-179 537-706 (857)
164 COG1729 Uncharacterized protei 99.0 7.6E-09 1.6E-13 76.8 12.7 105 27-131 144-254 (262)
165 COG3071 HemY Uncharacterized e 99.0 1.1E-07 2.4E-12 73.7 18.9 172 3-179 131-376 (400)
166 COG4700 Uncharacterized protei 99.0 1E-07 2.3E-12 66.8 16.8 128 26-157 91-221 (251)
167 PF13512 TPR_18: Tetratricopep 99.0 6.3E-09 1.4E-13 70.2 10.6 94 1-94 21-135 (142)
168 COG4105 ComL DNA uptake lipopr 99.0 2.1E-07 4.6E-12 68.7 19.0 153 23-178 33-218 (254)
169 PF06552 TOM20_plant: Plant sp 99.0 1.1E-08 2.3E-13 71.3 11.6 95 40-134 7-122 (186)
170 KOG4648 Uncharacterized conser 99.0 2.9E-09 6.3E-14 81.2 9.3 109 27-135 100-208 (536)
171 PLN03077 Protein ECB2; Provisi 99.0 5.8E-08 1.3E-12 86.0 17.8 151 2-158 566-720 (857)
172 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 5.1E-09 1.1E-13 83.2 9.7 69 54-122 71-142 (453)
173 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 5.6E-09 1.2E-13 82.9 9.7 70 19-88 70-142 (453)
174 KOG1915 Cell cycle control pro 99.0 2.3E-07 5E-12 73.8 18.3 155 2-161 85-239 (677)
175 COG0457 NrfG FOG: TPR repeat [ 98.9 5E-07 1.1E-11 66.4 19.1 168 3-174 72-246 (291)
176 COG0457 NrfG FOG: TPR repeat [ 98.9 9.2E-07 2E-11 65.0 20.5 168 6-176 39-214 (291)
177 COG4785 NlpI Lipoprotein NlpI, 98.9 1.5E-08 3.2E-13 72.7 9.7 104 24-127 65-168 (297)
178 KOG4648 Uncharacterized conser 98.9 8.6E-09 1.9E-13 78.7 8.8 98 61-161 100-197 (536)
179 COG4700 Uncharacterized protei 98.9 6.1E-07 1.3E-11 63.0 16.9 138 33-174 65-205 (251)
180 KOG3785 Uncharacterized conser 98.9 1.2E-07 2.6E-12 72.8 14.2 141 34-178 32-199 (557)
181 KOG2053 Mitochondrial inherita 98.9 1.3E-07 2.8E-12 80.1 15.3 136 1-137 20-155 (932)
182 PF13424 TPR_12: Tetratricopep 98.9 5.2E-09 1.1E-13 64.4 5.5 62 59-120 6-74 (78)
183 PF05843 Suf: Suppressor of fo 98.8 2.6E-07 5.6E-12 71.1 15.1 133 26-161 3-139 (280)
184 PF06552 TOM20_plant: Plant sp 98.8 6.7E-08 1.4E-12 67.5 10.6 98 74-172 7-122 (186)
185 KOG4555 TPR repeat-containing 98.8 4.3E-07 9.2E-12 60.0 13.3 98 61-161 46-147 (175)
186 KOG4555 TPR repeat-containing 98.8 3.8E-07 8.2E-12 60.2 13.0 98 27-124 46-147 (175)
187 KOG2796 Uncharacterized conser 98.8 2.6E-07 5.7E-12 68.2 13.5 134 25-161 178-318 (366)
188 KOG1130 Predicted G-alpha GTPa 98.8 2.7E-08 5.8E-13 77.7 8.1 177 3-182 30-293 (639)
189 COG3071 HemY Uncharacterized e 98.8 1.3E-06 2.9E-11 67.9 17.1 130 22-158 261-390 (400)
190 PF13424 TPR_12: Tetratricopep 98.8 1.2E-08 2.6E-13 62.8 4.5 68 89-159 2-76 (78)
191 KOG3081 Vesicle coat complex C 98.8 2.6E-06 5.7E-11 63.1 16.7 145 24-179 108-256 (299)
192 KOG4642 Chaperone-dependent E3 98.7 1.4E-07 3.1E-12 68.5 9.8 93 29-121 15-107 (284)
193 KOG1070 rRNA processing protei 98.7 4.1E-06 9E-11 74.4 18.4 157 1-161 1469-1632(1710)
194 KOG1070 rRNA processing protei 98.7 2.3E-06 5E-11 75.9 16.8 152 6-161 1440-1596(1710)
195 PRK04841 transcriptional regul 98.7 6.2E-06 1.3E-10 73.7 19.8 154 3-159 422-603 (903)
196 PF13428 TPR_14: Tetratricopep 98.6 9.2E-08 2E-12 51.8 5.1 40 94-133 3-42 (44)
197 PRK04841 transcriptional regul 98.6 5.7E-06 1.2E-10 74.0 18.8 156 2-160 464-643 (903)
198 PF13428 TPR_14: Tetratricopep 98.6 1.4E-07 3E-12 51.1 5.3 42 59-100 2-43 (44)
199 KOG4340 Uncharacterized conser 98.6 3E-06 6.5E-11 64.0 13.9 143 35-181 21-195 (459)
200 KOG1586 Protein required for f 98.6 5.9E-05 1.3E-09 55.1 19.8 127 31-161 41-186 (288)
201 KOG3081 Vesicle coat complex C 98.6 1.1E-05 2.3E-10 59.9 16.1 149 3-161 121-274 (299)
202 KOG1586 Protein required for f 98.6 0.00011 2.4E-09 53.7 20.3 171 36-209 85-280 (288)
203 KOG2053 Mitochondrial inherita 98.5 1.9E-05 4.1E-10 67.4 18.3 136 35-175 20-155 (932)
204 KOG4642 Chaperone-dependent E3 98.5 3.2E-07 7E-12 66.7 6.8 95 61-158 13-107 (284)
205 KOG0376 Serine-threonine phosp 98.5 2E-07 4.3E-12 74.2 6.0 108 30-137 10-117 (476)
206 PF04184 ST7: ST7 protein; In 98.5 1.3E-05 2.7E-10 64.6 15.9 165 4-171 182-387 (539)
207 PF05843 Suf: Suppressor of fo 98.5 5.9E-06 1.3E-10 63.6 13.9 124 5-128 16-143 (280)
208 PF13431 TPR_17: Tetratricopep 98.5 1.5E-07 3.2E-12 47.8 3.2 32 81-112 2-33 (34)
209 KOG0545 Aryl-hydrocarbon recep 98.5 7.5E-06 1.6E-10 60.1 12.9 101 58-161 178-296 (329)
210 KOG2610 Uncharacterized conser 98.5 1.2E-05 2.6E-10 61.7 14.5 151 3-156 116-274 (491)
211 COG3118 Thioredoxin domain-con 98.5 2.3E-05 4.9E-10 59.2 15.8 129 26-161 136-268 (304)
212 KOG2796 Uncharacterized conser 98.5 6.3E-06 1.4E-10 61.1 12.2 124 3-126 190-320 (366)
213 PF10300 DUF3808: Protein of u 98.4 2.8E-05 6.1E-10 64.2 17.0 154 3-159 201-377 (468)
214 KOG1941 Acetylcholine receptor 98.4 1.8E-05 3.8E-10 61.4 14.2 155 25-182 123-304 (518)
215 KOG2047 mRNA splicing factor [ 98.4 7.1E-05 1.5E-09 62.1 18.1 153 3-158 360-540 (835)
216 KOG0376 Serine-threonine phosp 98.4 8.5E-07 1.8E-11 70.7 6.8 115 62-180 8-122 (476)
217 KOG2471 TPR repeat-containing 98.4 1.6E-06 3.4E-11 69.4 8.1 133 8-140 224-383 (696)
218 PF00515 TPR_1: Tetratricopept 98.4 8.9E-07 1.9E-11 45.0 4.3 32 93-124 2-33 (34)
219 PF13281 DUF4071: Domain of un 98.4 0.00017 3.6E-09 57.2 18.4 156 2-161 153-337 (374)
220 PF07719 TPR_2: Tetratricopept 98.3 1.8E-06 3.8E-11 43.8 5.0 32 93-124 2-33 (34)
221 PF13431 TPR_17: Tetratricopep 98.3 7.8E-07 1.7E-11 45.1 3.2 33 114-149 1-33 (34)
222 KOG0551 Hsp90 co-chaperone CNS 98.3 4.6E-06 9.9E-11 63.7 8.6 99 26-124 83-185 (390)
223 PF10300 DUF3808: Protein of u 98.3 2.4E-05 5.3E-10 64.5 13.2 118 4-121 247-376 (468)
224 KOG2610 Uncharacterized conser 98.3 6.6E-05 1.4E-09 57.8 13.7 147 30-179 109-262 (491)
225 PF03704 BTAD: Bacterial trans 98.3 9.2E-05 2E-09 51.2 13.7 112 31-158 13-125 (146)
226 KOG2047 mRNA splicing factor [ 98.2 0.00048 1E-08 57.4 18.7 161 2-165 399-586 (835)
227 KOG1585 Protein required for f 98.2 0.00052 1.1E-08 50.7 16.9 205 6-213 9-245 (308)
228 KOG0545 Aryl-hydrocarbon recep 98.2 2.1E-05 4.6E-10 57.8 9.8 104 25-128 179-300 (329)
229 COG3898 Uncharacterized membra 98.2 0.00043 9.3E-09 54.5 17.2 155 3-161 133-295 (531)
230 PF00515 TPR_1: Tetratricopept 98.2 4.9E-06 1.1E-10 42.1 4.3 32 59-90 2-33 (34)
231 PF03704 BTAD: Bacterial trans 98.2 0.00018 3.9E-09 49.8 13.3 48 129-180 65-112 (146)
232 COG3118 Thioredoxin domain-con 98.1 0.00048 1.1E-08 52.2 16.0 148 2-153 146-296 (304)
233 PF07719 TPR_2: Tetratricopept 98.1 9.5E-06 2.1E-10 41.0 5.0 32 59-90 2-33 (34)
234 PF08424 NRDE-2: NRDE-2, neces 98.1 0.00079 1.7E-08 53.0 17.9 146 11-159 6-184 (321)
235 KOG2471 TPR repeat-containing 98.1 3.5E-05 7.7E-10 61.9 10.2 147 28-178 210-383 (696)
236 KOG0551 Hsp90 co-chaperone CNS 98.1 8.3E-05 1.8E-09 57.0 11.6 100 59-161 82-185 (390)
237 KOG1941 Acetylcholine receptor 98.1 0.00028 6E-09 55.0 14.0 158 3-160 135-322 (518)
238 PF04184 ST7: ST7 protein; In 98.0 0.0014 3.1E-08 53.2 17.4 126 28-158 172-324 (539)
239 KOG1585 Protein required for f 98.0 0.0013 2.7E-08 48.7 15.7 170 3-175 44-239 (308)
240 KOG1308 Hsp70-interacting prot 98.0 2.7E-06 5.9E-11 65.1 1.9 92 31-122 121-212 (377)
241 KOG2396 HAT (Half-A-TPR) repea 97.9 0.00019 4.2E-09 57.9 11.1 91 42-132 89-180 (568)
242 KOG2300 Uncharacterized conser 97.9 0.0031 6.7E-08 51.1 17.5 171 3-179 336-536 (629)
243 COG2976 Uncharacterized protei 97.9 0.0027 5.8E-08 45.4 15.4 97 61-161 92-191 (207)
244 PF13181 TPR_8: Tetratricopept 97.9 2.9E-05 6.3E-10 39.2 4.1 30 94-123 3-32 (34)
245 PF04910 Tcf25: Transcriptiona 97.9 0.0019 4.1E-08 51.6 15.8 144 15-161 31-225 (360)
246 KOG1308 Hsp70-interacting prot 97.9 1.4E-05 3.1E-10 61.3 3.5 89 2-90 126-214 (377)
247 KOG3617 WD40 and TPR repeat-co 97.9 0.0098 2.1E-07 51.5 20.1 195 22-227 910-1188(1416)
248 KOG4507 Uncharacterized conser 97.9 9.2E-05 2E-09 60.9 8.1 93 36-128 619-712 (886)
249 PF02259 FAT: FAT domain; Int 97.8 0.0027 5.8E-08 50.5 16.5 140 22-161 144-341 (352)
250 PF09613 HrpB1_HrpK: Bacterial 97.8 0.0024 5.1E-08 44.4 13.6 99 59-161 11-109 (160)
251 COG0790 FOG: TPR repeat, SEL1 97.8 0.0086 1.9E-07 46.5 18.7 149 5-159 56-221 (292)
252 COG3898 Uncharacterized membra 97.8 0.0082 1.8E-07 47.5 17.8 149 4-160 168-360 (531)
253 KOG0530 Protein farnesyltransf 97.8 0.0016 3.5E-08 48.6 13.2 168 6-174 59-231 (318)
254 PF13181 TPR_8: Tetratricopept 97.7 0.00013 2.8E-09 36.7 4.7 31 59-89 2-32 (34)
255 KOG2396 HAT (Half-A-TPR) repea 97.7 0.0011 2.4E-08 53.7 11.8 91 8-98 89-180 (568)
256 COG2976 Uncharacterized protei 97.7 0.0024 5.1E-08 45.7 12.2 116 9-125 71-192 (207)
257 PF07079 DUF1347: Protein of u 97.7 0.0079 1.7E-07 48.5 15.9 144 29-179 384-545 (549)
258 PF13174 TPR_6: Tetratricopept 97.6 0.00018 3.8E-09 35.8 4.5 30 95-124 3-32 (33)
259 PF04781 DUF627: Protein of un 97.6 0.0014 3E-08 42.4 9.4 90 31-120 3-106 (111)
260 PF13176 TPR_7: Tetratricopept 97.6 0.00013 2.7E-09 37.4 3.8 25 95-119 2-26 (36)
261 KOG3617 WD40 and TPR repeat-co 97.6 0.003 6.4E-08 54.5 13.6 125 29-158 831-996 (1416)
262 KOG4507 Uncharacterized conser 97.6 0.00029 6.2E-09 58.1 7.2 101 64-168 613-714 (886)
263 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0013 2.9E-08 45.6 9.4 85 26-110 12-96 (160)
264 PF08424 NRDE-2: NRDE-2, neces 97.5 0.0085 1.9E-07 47.2 14.9 115 45-159 6-132 (321)
265 PF14561 TPR_20: Tetratricopep 97.5 0.0021 4.6E-08 40.4 9.2 64 78-141 8-73 (90)
266 KOG0530 Protein farnesyltransf 97.5 0.012 2.6E-07 44.1 14.3 119 39-160 58-178 (318)
267 PF13281 DUF4071: Domain of un 97.5 0.0066 1.4E-07 48.3 13.9 118 23-141 140-274 (374)
268 PF13174 TPR_6: Tetratricopept 97.5 0.00023 5E-09 35.4 4.0 31 60-90 2-32 (33)
269 PRK10941 hypothetical protein; 97.5 0.0022 4.7E-08 48.9 11.0 65 94-161 183-247 (269)
270 KOG1550 Extracellular protein 97.5 0.015 3.3E-07 49.4 16.5 149 6-160 228-395 (552)
271 PRK10941 hypothetical protein; 97.5 0.0026 5.6E-08 48.5 10.8 75 61-135 184-258 (269)
272 COG3914 Spy Predicted O-linked 97.5 0.035 7.5E-07 46.3 17.6 140 38-181 45-193 (620)
273 KOG1914 mRNA cleavage and poly 97.5 0.022 4.8E-07 47.0 16.1 164 6-172 309-480 (656)
274 PF14561 TPR_20: Tetratricopep 97.4 0.005 1.1E-07 38.7 10.1 73 10-82 8-82 (90)
275 COG0790 FOG: TPR repeat, SEL1 97.4 0.037 8E-07 42.9 20.0 130 5-141 92-237 (292)
276 PF13176 TPR_7: Tetratricopept 97.4 0.00058 1.3E-08 34.9 4.4 25 61-85 2-26 (36)
277 PF04910 Tcf25: Transcriptiona 97.4 0.053 1.1E-06 43.5 17.9 129 49-180 31-194 (360)
278 KOG3824 Huntingtin interacting 97.3 0.0013 2.7E-08 50.4 7.5 70 65-134 123-192 (472)
279 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0019 4.2E-08 36.1 6.4 34 95-128 4-37 (53)
280 KOG1914 mRNA cleavage and poly 97.3 0.019 4.2E-07 47.3 14.3 73 48-121 10-82 (656)
281 TIGR02561 HrpB1_HrpK type III 97.3 0.023 4.9E-07 38.9 12.4 81 61-141 13-93 (153)
282 PRK15180 Vi polysaccharide bio 97.3 0.0033 7.2E-08 51.0 9.7 124 2-125 301-424 (831)
283 COG5191 Uncharacterized conser 97.3 0.00053 1.2E-08 52.4 4.9 87 47-133 96-183 (435)
284 smart00028 TPR Tetratricopepti 97.3 0.00068 1.5E-08 32.9 3.9 30 94-123 3-32 (34)
285 KOG1550 Extracellular protein 97.2 0.06 1.3E-06 45.8 17.3 148 3-159 262-427 (552)
286 TIGR02561 HrpB1_HrpK type III 97.2 0.0045 9.7E-08 42.3 8.4 73 37-109 23-95 (153)
287 PF04781 DUF627: Protein of un 97.2 0.013 2.7E-07 38.0 9.8 92 64-158 2-107 (111)
288 KOG1258 mRNA processing protei 97.1 0.13 2.9E-06 43.0 19.2 166 2-171 309-482 (577)
289 KOG2300 Uncharacterized conser 97.1 0.12 2.7E-06 42.3 17.1 151 4-160 289-476 (629)
290 COG5191 Uncharacterized conser 97.0 0.0011 2.5E-08 50.6 4.7 86 13-98 96-182 (435)
291 PRK15180 Vi polysaccharide bio 97.0 0.0098 2.1E-07 48.4 9.7 124 35-161 300-423 (831)
292 KOG3824 Huntingtin interacting 97.0 0.0038 8.2E-08 47.9 7.0 71 31-101 123-193 (472)
293 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0099 2.1E-07 33.2 7.0 47 127-177 2-48 (53)
294 smart00028 TPR Tetratricopepti 96.9 0.0018 3.8E-08 31.3 3.6 30 60-89 3-32 (34)
295 KOG1839 Uncharacterized protei 96.9 0.021 4.6E-07 51.7 12.0 147 9-158 957-1128(1236)
296 KOG1310 WD40 repeat protein [G 96.9 0.0039 8.5E-08 51.1 6.9 97 30-126 380-479 (758)
297 PF10602 RPN7: 26S proteasome 96.8 0.048 1E-06 39.0 11.5 96 59-157 37-141 (177)
298 PF02259 FAT: FAT domain; Int 96.8 0.19 4.1E-06 39.9 18.5 122 57-182 145-310 (352)
299 PF09986 DUF2225: Uncharacteri 96.8 0.026 5.6E-07 41.7 9.9 84 38-121 91-194 (214)
300 PF09986 DUF2225: Uncharacteri 96.7 0.062 1.3E-06 39.7 11.2 87 71-160 90-196 (214)
301 COG4976 Predicted methyltransf 96.6 0.0039 8.5E-08 45.7 4.6 57 35-91 6-62 (287)
302 COG4976 Predicted methyltransf 96.6 0.0061 1.3E-07 44.8 5.4 57 69-125 6-62 (287)
303 PF10602 RPN7: 26S proteasome 96.5 0.074 1.6E-06 38.1 10.5 94 25-118 37-139 (177)
304 COG3914 Spy Predicted O-linked 96.5 0.16 3.4E-06 42.6 13.2 127 9-135 50-185 (620)
305 PF13374 TPR_10: Tetratricopep 96.4 0.01 2.2E-07 31.0 4.5 29 93-121 3-31 (42)
306 KOG3364 Membrane protein invol 96.4 0.11 2.5E-06 35.0 10.0 71 59-129 33-108 (149)
307 PF12968 DUF3856: Domain of Un 96.4 0.14 3.1E-06 33.7 11.4 86 70-158 21-129 (144)
308 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.26 5.7E-06 40.2 13.6 69 12-83 290-358 (660)
309 KOG0529 Protein geranylgeranyl 96.3 0.31 6.8E-06 39.1 13.7 160 7-167 46-232 (421)
310 PF08631 SPO22: Meiosis protei 96.3 0.35 7.6E-06 37.4 23.0 122 2-123 5-152 (278)
311 COG2909 MalT ATP-dependent tra 96.3 0.74 1.6E-05 40.7 17.4 104 3-106 428-551 (894)
312 KOG4814 Uncharacterized conser 96.3 0.11 2.4E-06 43.9 11.4 93 63-158 359-457 (872)
313 KOG3364 Membrane protein invol 96.2 0.1 2.2E-06 35.2 8.8 74 23-96 31-109 (149)
314 COG2912 Uncharacterized conser 96.1 0.076 1.6E-06 40.3 8.9 65 94-161 183-247 (269)
315 KOG1310 WD40 repeat protein [G 96.0 0.034 7.4E-07 45.9 7.2 87 72-161 388-477 (758)
316 KOG0985 Vesicle coat protein c 95.9 0.68 1.5E-05 41.8 14.7 119 22-156 1102-1247(1666)
317 COG4649 Uncharacterized protei 95.9 0.39 8.5E-06 34.1 13.4 145 29-178 63-214 (221)
318 PF13374 TPR_10: Tetratricopep 95.9 0.032 6.9E-07 29.0 4.6 30 59-88 3-32 (42)
319 PF08631 SPO22: Meiosis protei 95.8 0.62 1.3E-05 36.0 17.4 124 34-160 3-152 (278)
320 KOG2422 Uncharacterized conser 95.8 0.96 2.1E-05 38.1 19.8 157 4-161 252-451 (665)
321 PF12968 DUF3856: Domain of Un 95.8 0.3 6.4E-06 32.3 11.4 88 33-120 18-128 (144)
322 KOG4814 Uncharacterized conser 95.8 0.17 3.8E-06 42.9 10.5 95 27-121 357-457 (872)
323 PRK13184 pknD serine/threonine 95.8 0.099 2.1E-06 46.9 9.8 96 31-127 482-587 (932)
324 COG3629 DnrI DNA-binding trans 95.8 0.079 1.7E-06 40.6 8.0 79 74-157 137-215 (280)
325 PF07079 DUF1347: Protein of u 95.8 0.87 1.9E-05 37.3 14.7 130 26-158 8-157 (549)
326 PF04053 Coatomer_WDAD: Coatom 95.8 0.21 4.6E-06 41.2 11.0 104 27-157 298-401 (443)
327 COG2912 Uncharacterized conser 95.8 0.12 2.7E-06 39.1 8.8 72 63-134 186-257 (269)
328 KOG1258 mRNA processing protei 95.7 1.1 2.3E-05 37.9 18.0 123 25-150 298-421 (577)
329 COG3629 DnrI DNA-binding trans 95.7 0.23 5.1E-06 38.1 10.2 64 58-121 153-216 (280)
330 PF10373 EST1_DNA_bind: Est1 D 95.7 0.071 1.5E-06 41.0 7.7 62 43-104 1-62 (278)
331 PRK13184 pknD serine/threonine 95.7 0.25 5.3E-06 44.5 11.7 93 3-96 488-590 (932)
332 PF12862 Apc5: Anaphase-promot 95.7 0.11 2.4E-06 32.9 7.3 27 129-158 44-70 (94)
333 KOG2581 26S proteasome regulat 95.6 0.91 2E-05 36.6 13.2 123 2-126 138-281 (493)
334 PF07720 TPR_3: Tetratricopept 95.6 0.07 1.5E-06 27.1 4.9 30 94-123 3-34 (36)
335 PF12862 Apc5: Anaphase-promot 95.4 0.22 4.9E-06 31.5 8.1 57 67-123 7-72 (94)
336 PF15015 NYD-SP12_N: Spermatog 95.3 0.29 6.3E-06 39.5 9.7 89 31-119 183-289 (569)
337 KOG3807 Predicted membrane pro 95.2 0.85 1.8E-05 35.9 11.7 30 128-160 277-306 (556)
338 COG2909 MalT ATP-dependent tra 95.2 2.2 4.7E-05 37.9 16.1 120 22-141 413-552 (894)
339 KOG3616 Selective LIM binding 95.0 0.61 1.3E-05 40.6 11.4 142 4-159 746-912 (1636)
340 PF11207 DUF2989: Protein of u 95.0 0.33 7.1E-06 35.2 8.6 78 35-113 117-199 (203)
341 KOG0529 Protein geranylgeranyl 95.0 0.83 1.8E-05 36.8 11.5 126 6-131 91-234 (421)
342 PF10373 EST1_DNA_bind: Est1 D 94.8 0.15 3.1E-06 39.2 7.0 62 9-70 1-62 (278)
343 PF07721 TPR_4: Tetratricopept 94.5 0.06 1.3E-06 25.0 2.6 19 96-114 5-23 (26)
344 KOG2581 26S proteasome regulat 94.4 1 2.2E-05 36.4 10.6 127 32-161 134-279 (493)
345 KOG2041 WD40 repeat protein [G 94.4 0.75 1.6E-05 39.8 10.5 57 59-115 797-875 (1189)
346 PF10345 Cohesin_load: Cohesin 94.4 3.2 6.9E-05 36.1 21.1 116 40-159 37-169 (608)
347 PF07721 TPR_4: Tetratricopept 94.3 0.086 1.9E-06 24.5 3.0 22 26-47 3-24 (26)
348 smart00386 HAT HAT (Half-A-TPR 94.2 0.17 3.6E-06 24.4 4.3 24 75-98 4-27 (33)
349 COG1747 Uncharacterized N-term 94.2 3 6.5E-05 35.0 15.4 146 10-161 86-291 (711)
350 PF11207 DUF2989: Protein of u 94.1 1.4 3E-05 32.1 10.0 79 68-150 116-199 (203)
351 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.13 2.8E-06 26.5 3.5 27 94-120 3-29 (38)
352 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.15 3.3E-06 26.2 3.7 29 59-87 2-30 (38)
353 PF04190 DUF410: Protein of un 93.9 1.8 4E-05 33.1 11.1 26 22-47 88-113 (260)
354 KOG1839 Uncharacterized protei 93.8 0.52 1.1E-05 43.2 9.0 132 26-160 934-1088(1236)
355 COG5536 BET4 Protein prenyltra 93.8 2.1 4.6E-05 32.8 10.8 160 7-167 49-230 (328)
356 PF10579 Rapsyn_N: Rapsyn N-te 93.8 0.9 1.9E-05 27.6 7.6 48 68-115 16-66 (80)
357 COG3947 Response regulator con 93.7 0.46 1E-05 36.6 7.3 60 95-157 282-341 (361)
358 PF07720 TPR_3: Tetratricopept 93.7 0.39 8.5E-06 24.3 4.9 29 61-89 4-34 (36)
359 PF04053 Coatomer_WDAD: Coatom 93.7 1.6 3.4E-05 36.2 11.0 76 31-119 325-400 (443)
360 PF15015 NYD-SP12_N: Spermatog 93.7 0.56 1.2E-05 38.0 8.0 88 66-156 184-289 (569)
361 smart00386 HAT HAT (Half-A-TPR 93.6 0.24 5.1E-06 23.8 4.1 29 38-66 1-29 (33)
362 PF11817 Foie-gras_1: Foie gra 93.4 1.6 3.6E-05 33.0 10.1 81 72-155 152-244 (247)
363 COG5107 RNA14 Pre-mRNA 3'-end 93.4 3.9 8.4E-05 33.8 14.8 155 12-168 30-199 (660)
364 KOG1464 COP9 signalosome, subu 93.4 2.8 6.2E-05 32.2 16.4 49 4-52 41-93 (440)
365 PF10579 Rapsyn_N: Rapsyn N-te 93.4 1.1 2.3E-05 27.3 7.8 58 98-158 12-72 (80)
366 COG3947 Response regulator con 93.3 0.56 1.2E-05 36.1 7.1 58 62-119 283-340 (361)
367 PF12854 PPR_1: PPR repeat 93.0 0.35 7.6E-06 24.1 4.1 27 57-83 6-32 (34)
368 KOG2422 Uncharacterized conser 93.0 5.1 0.00011 34.0 15.3 116 38-155 252-404 (665)
369 PF10345 Cohesin_load: Cohesin 92.8 6.1 0.00013 34.4 19.2 145 7-155 38-205 (608)
370 PF04090 RNA_pol_I_TF: RNA pol 92.2 3.4 7.4E-05 30.1 11.7 63 27-89 44-107 (199)
371 KOG0890 Protein kinase of the 92.2 12 0.00025 37.4 15.3 151 22-177 1668-1852(2382)
372 PF13041 PPR_2: PPR repeat fam 91.8 1.2 2.6E-05 24.1 6.2 25 95-119 6-30 (50)
373 PF12854 PPR_1: PPR repeat 91.6 0.65 1.4E-05 23.0 4.1 27 91-117 6-32 (34)
374 COG4649 Uncharacterized protei 91.4 3.9 8.5E-05 29.2 16.5 134 3-137 71-211 (221)
375 PF14863 Alkyl_sulf_dimr: Alky 91.3 1.1 2.5E-05 30.7 6.2 52 90-141 68-119 (141)
376 COG4455 ImpE Protein of avirul 91.2 4.8 0.0001 29.9 11.5 56 2-57 13-68 (273)
377 PF09797 NatB_MDM20: N-acetylt 91.1 2.2 4.8E-05 34.4 8.8 45 40-84 199-243 (365)
378 KOG0546 HSP90 co-chaperone CPR 91.0 0.48 1E-05 37.3 4.6 99 30-128 228-345 (372)
379 TIGR03504 FimV_Cterm FimV C-te 90.9 0.66 1.4E-05 24.7 3.8 24 96-119 3-26 (44)
380 KOG0890 Protein kinase of the 90.8 9.6 0.00021 38.0 13.3 124 56-183 1668-1808(2382)
381 PHA02537 M terminase endonucle 90.8 0.79 1.7E-05 34.2 5.4 33 93-125 170-211 (230)
382 PF09670 Cas_Cas02710: CRISPR- 90.7 4.3 9.3E-05 33.0 10.0 16 105-120 254-269 (379)
383 PF11817 Foie-gras_1: Foie gra 90.5 4.5 9.8E-05 30.7 9.5 80 40-119 154-245 (247)
384 PF10255 Paf67: RNA polymerase 90.4 5.3 0.00012 32.6 10.1 60 61-120 125-192 (404)
385 COG4941 Predicted RNA polymera 90.2 8 0.00017 30.7 16.7 152 6-161 212-397 (415)
386 PF04190 DUF410: Protein of un 89.6 7.8 0.00017 29.7 16.7 140 2-158 2-170 (260)
387 PF00244 14-3-3: 14-3-3 protei 89.4 7.6 0.00016 29.3 12.2 48 108-158 142-198 (236)
388 KOG1463 26S proteasome regulat 89.3 9.6 0.00021 30.3 11.3 158 2-160 140-318 (411)
389 PF13226 DUF4034: Domain of un 89.2 8.7 0.00019 29.7 11.5 109 32-141 8-148 (277)
390 KOG2041 WD40 repeat protein [G 88.9 2.8 6.1E-05 36.5 7.8 118 25-155 797-936 (1189)
391 KOG4279 Serine/threonine prote 88.3 6.9 0.00015 34.5 9.6 17 145-161 382-398 (1226)
392 TIGR03504 FimV_Cterm FimV C-te 88.2 1.4 3E-05 23.5 3.8 28 129-159 2-29 (44)
393 COG5536 BET4 Protein prenyltra 88.2 5.4 0.00012 30.7 8.1 129 7-135 91-236 (328)
394 PF09205 DUF1955: Domain of un 87.9 6.6 0.00014 26.8 7.5 80 38-122 70-150 (161)
395 KOG0128 RNA-binding protein SA 87.7 20 0.00044 32.0 13.6 120 38-158 93-219 (881)
396 PF01535 PPR: PPR repeat; Int 87.6 1.2 2.6E-05 20.9 3.2 21 97-117 5-25 (31)
397 PF13041 PPR_2: PPR repeat fam 87.3 3.2 6.9E-05 22.4 6.3 44 125-171 2-45 (50)
398 PF09205 DUF1955: Domain of un 87.2 7.4 0.00016 26.5 7.9 80 72-159 70-150 (161)
399 KOG4279 Serine/threonine prote 87.1 7.6 0.00016 34.3 9.2 16 108-123 303-318 (1226)
400 COG4455 ImpE Protein of avirul 87.0 11 0.00023 28.2 12.8 61 32-92 9-69 (273)
401 PF09670 Cas_Cas02710: CRISPR- 87.0 15 0.00033 29.9 12.5 62 27-88 134-199 (379)
402 KOG1464 COP9 signalosome, subu 86.8 13 0.00027 28.8 10.3 117 38-157 41-173 (440)
403 COG1747 Uncharacterized N-term 86.7 18 0.0004 30.6 18.0 98 55-158 63-160 (711)
404 KOG0276 Vesicle coat complex C 86.6 8 0.00017 33.2 8.9 78 28-121 618-695 (794)
405 KOG3807 Predicted membrane pro 86.0 16 0.00034 29.2 14.9 112 28-141 188-326 (556)
406 KOG3616 Selective LIM binding 86.0 25 0.00054 31.4 13.4 46 1-47 455-500 (1636)
407 PF09797 NatB_MDM20: N-acetylt 85.7 8 0.00017 31.2 8.6 68 51-118 170-243 (365)
408 KOG3783 Uncharacterized conser 85.7 17 0.00036 30.8 10.3 93 7-99 250-344 (546)
409 PF10255 Paf67: RNA polymerase 85.6 7.5 0.00016 31.8 8.3 61 94-157 124-192 (404)
410 KOG0686 COP9 signalosome, subu 85.2 13 0.00028 30.4 9.1 95 25-119 151-256 (466)
411 COG5159 RPN6 26S proteasome re 85.1 16 0.00035 28.5 11.5 152 3-157 16-193 (421)
412 TIGR00756 PPR pentatricopeptid 84.4 2.9 6.4E-05 20.0 3.8 24 96-119 4-27 (35)
413 PF14863 Alkyl_sulf_dimr: Alky 84.2 8.7 0.00019 26.4 7.0 52 58-109 70-121 (141)
414 PRK15490 Vi polysaccharide bio 83.8 28 0.0006 30.1 13.0 76 73-153 23-98 (578)
415 KOG4014 Uncharacterized conser 83.7 14 0.00031 26.7 13.9 132 23-159 33-198 (248)
416 KOG2114 Vacuolar assembly/sort 83.5 13 0.00027 33.3 9.0 30 24-53 368-397 (933)
417 KOG0985 Vesicle coat protein c 83.0 40 0.00087 31.4 17.0 80 90-179 1102-1181(1666)
418 PF11846 DUF3366: Domain of un 83.0 7.7 0.00017 28.1 6.9 49 75-124 128-176 (193)
419 KOG0546 HSP90 co-chaperone CPR 82.8 1.5 3.2E-05 34.8 3.1 80 27-106 278-357 (372)
420 PHA02537 M terminase endonucle 82.8 6.6 0.00014 29.4 6.4 95 67-161 92-210 (230)
421 KOG0276 Vesicle coat complex C 82.0 33 0.00072 29.7 10.9 69 9-86 626-694 (794)
422 cd02680 MIT_calpain7_2 MIT: do 82.0 4.4 9.6E-05 24.4 4.3 15 106-120 20-34 (75)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 81.3 14 0.0003 24.8 12.6 76 72-156 40-126 (126)
424 cd02682 MIT_AAA_Arch MIT: doma 80.7 8.7 0.00019 23.2 5.2 23 29-51 11-33 (75)
425 COG4941 Predicted RNA polymera 80.6 28 0.0006 27.9 9.9 129 4-133 270-406 (415)
426 PF10952 DUF2753: Protein of u 79.4 16 0.00035 24.5 7.9 24 129-155 53-76 (140)
427 PF13226 DUF4034: Domain of un 78.9 28 0.00061 27.0 9.5 113 2-114 12-155 (277)
428 PRK15490 Vi polysaccharide bio 78.9 21 0.00046 30.7 8.8 77 38-116 22-98 (578)
429 cd02680 MIT_calpain7_2 MIT: do 78.8 5.6 0.00012 24.0 4.0 17 71-87 19-35 (75)
430 PF13812 PPR_3: Pentatricopept 77.7 6.2 0.00014 18.8 4.1 24 95-118 4-27 (34)
431 PF04840 Vps16_C: Vps16, C-ter 77.5 34 0.00074 27.2 10.4 99 34-152 187-285 (319)
432 KOG0687 26S proteasome regulat 77.4 35 0.00075 27.2 10.9 99 24-122 104-211 (393)
433 PF14852 Fis1_TPR_N: Fis1 N-te 76.8 5.9 0.00013 19.9 3.2 33 127-159 2-34 (35)
434 cd02677 MIT_SNX15 MIT: domain 76.2 6.3 0.00014 23.8 3.8 14 106-119 20-33 (75)
435 KOG4151 Myosin assembly protei 75.4 18 0.0004 31.9 7.6 101 30-130 59-165 (748)
436 PF10952 DUF2753: Protein of u 74.9 22 0.00049 23.8 6.8 27 27-53 4-30 (140)
437 KOG0686 COP9 signalosome, subu 74.4 47 0.001 27.3 13.7 95 59-156 151-256 (466)
438 KOG4151 Myosin assembly protei 74.2 22 0.00047 31.5 7.7 97 64-164 59-161 (748)
439 cd02682 MIT_AAA_Arch MIT: doma 73.9 17 0.00037 21.9 5.6 16 104-119 18-33 (75)
440 KOG1463 26S proteasome regulat 73.8 45 0.00097 26.8 11.5 144 30-175 134-296 (411)
441 COG2015 Alkyl sulfatase and re 73.5 19 0.00042 30.2 6.9 48 94-141 454-501 (655)
442 PRK11619 lytic murein transgly 73.2 66 0.0014 28.4 16.2 125 29-157 246-374 (644)
443 PF02184 HAT: HAT (Half-A-TPR) 72.8 9.8 0.00021 18.7 3.5 14 75-88 4-17 (32)
444 cd02684 MIT_2 MIT: domain cont 72.3 12 0.00027 22.5 4.4 14 106-119 20-33 (75)
445 cd00280 TRFH Telomeric Repeat 72.2 35 0.00075 24.8 9.1 34 31-65 118-151 (200)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 72.1 27 0.00058 23.4 9.2 45 75-119 80-126 (126)
447 smart00299 CLH Clathrin heavy 72.0 27 0.00059 23.5 13.5 79 33-117 16-94 (140)
448 PF11846 DUF3366: Domain of un 71.4 36 0.00077 24.6 11.3 50 108-161 127-176 (193)
449 PF04212 MIT: MIT (microtubule 71.1 15 0.00032 21.5 4.6 15 105-119 18-32 (69)
450 PF12753 Nro1: Nuclear pore co 69.9 12 0.00026 30.4 5.0 54 106-161 332-394 (404)
451 PF07219 HemY_N: HemY protein 69.3 28 0.00061 22.5 6.8 48 94-141 61-108 (108)
452 smart00671 SEL1 Sel1-like repe 68.8 12 0.00026 18.1 3.7 11 145-155 21-31 (36)
453 cd02681 MIT_calpain7_1 MIT: do 68.2 17 0.00037 22.0 4.4 17 104-120 18-34 (76)
454 PF02064 MAS20: MAS20 protein 68.1 17 0.00038 24.2 4.8 28 97-124 68-95 (121)
455 KOG1538 Uncharacterized conser 67.9 22 0.00049 31.0 6.3 49 66-118 781-830 (1081)
456 PF08238 Sel1: Sel1 repeat; I 67.8 14 0.00029 18.3 4.4 12 145-156 24-35 (39)
457 KOG1538 Uncharacterized conser 67.6 38 0.00081 29.8 7.6 52 98-155 779-830 (1081)
458 COG4259 Uncharacterized protei 67.2 19 0.00041 23.1 4.5 35 92-126 72-106 (121)
459 PF02064 MAS20: MAS20 protein 65.7 20 0.00044 23.9 4.7 27 30-56 69-95 (121)
460 PF04212 MIT: MIT (microtubule 65.1 18 0.00039 21.1 4.1 22 31-52 12-33 (69)
461 PF12921 ATP13: Mitochondrial 63.5 42 0.00092 22.5 8.1 63 60-122 4-82 (126)
462 COG5187 RPN7 26S proteasome re 61.9 77 0.0017 25.0 11.4 135 3-137 88-237 (412)
463 TIGR02996 rpt_mate_G_obs repea 61.1 23 0.0005 18.6 3.9 29 81-109 5-33 (42)
464 cd02679 MIT_spastin MIT: domai 61.0 22 0.00048 21.7 3.9 14 106-119 22-35 (79)
465 PF15469 Sec5: Exocyst complex 60.7 58 0.0013 23.3 6.8 21 34-54 96-116 (182)
466 PF05053 Menin: Menin; InterP 60.5 78 0.0017 27.3 8.1 46 74-119 295-345 (618)
467 PRK11619 lytic murein transgly 59.9 1.3E+02 0.0027 26.8 12.0 31 89-119 126-156 (644)
468 KOG1497 COP9 signalosome, subu 59.7 89 0.0019 25.0 11.0 95 26-120 105-212 (399)
469 smart00299 CLH Clathrin heavy 59.6 51 0.0011 22.1 12.4 44 4-48 21-64 (140)
470 PF12753 Nro1: Nuclear pore co 58.8 25 0.00054 28.7 4.9 34 145-181 334-367 (404)
471 PF15297 CKAP2_C: Cytoskeleton 58.0 40 0.00087 27.0 5.8 50 41-90 120-172 (353)
472 KOG4014 Uncharacterized conser 57.8 72 0.0016 23.3 16.5 60 39-102 88-154 (248)
473 KOG0128 RNA-binding protein SA 56.3 1.6E+02 0.0034 26.8 21.9 147 9-159 98-261 (881)
474 PF05053 Menin: Menin; InterP 56.3 93 0.002 26.9 7.8 69 73-159 275-348 (618)
475 KOG0687 26S proteasome regulat 55.5 1.1E+02 0.0023 24.6 14.1 101 58-161 104-213 (393)
476 PF10037 MRP-S27: Mitochondria 55.4 1.2E+02 0.0027 25.3 10.3 119 14-133 56-179 (429)
477 COG4259 Uncharacterized protei 55.4 54 0.0012 21.1 6.6 38 58-95 72-109 (121)
478 KOG2114 Vacuolar assembly/sort 55.3 1.7E+02 0.0036 26.8 9.8 103 32-141 342-446 (933)
479 TIGR02710 CRISPR-associated pr 54.4 1.2E+02 0.0026 24.9 10.3 121 1-121 141-275 (380)
480 KOG0292 Vesicle coat complex C 53.3 1.9E+02 0.0041 26.8 9.7 19 3-21 1004-1022(1202)
481 TIGR03362 VI_chp_7 type VI sec 53.3 1.1E+02 0.0024 24.1 13.8 119 1-120 110-278 (301)
482 PF14689 SPOB_a: Sensor_kinase 53.2 42 0.00091 19.2 4.8 22 97-118 28-49 (62)
483 smart00745 MIT Microtubule Int 52.8 44 0.00095 19.9 4.4 14 106-119 22-35 (77)
484 PF09477 Type_III_YscG: Bacter 52.1 65 0.0014 21.1 8.9 74 39-117 21-94 (116)
485 PF12583 TPPII_N: Tripeptidyl 52.0 73 0.0016 21.6 5.8 29 71-99 89-117 (139)
486 PF15297 CKAP2_C: Cytoskeleton 51.8 64 0.0014 25.9 6.0 64 74-137 119-186 (353)
487 cd00280 TRFH Telomeric Repeat 51.6 92 0.002 22.7 8.6 27 67-94 120-146 (200)
488 PF15469 Sec5: Exocyst complex 50.8 90 0.0019 22.3 6.9 25 67-91 95-119 (182)
489 PF07219 HemY_N: HemY protein 50.4 67 0.0015 20.7 6.5 45 62-106 63-107 (108)
490 PF12739 TRAPPC-Trs85: ER-Golg 50.2 1.5E+02 0.0032 24.6 14.5 25 133-160 377-401 (414)
491 cd02678 MIT_VPS4 MIT: domain c 48.4 58 0.0013 19.4 4.4 14 106-119 20-33 (75)
492 cd02656 MIT MIT: domain contai 48.0 58 0.0012 19.3 4.4 14 106-119 20-33 (75)
493 PF04348 LppC: LppC putative l 46.1 6.7 0.00015 33.5 0.0 90 25-114 25-120 (536)
494 PF12583 TPPII_N: Tripeptidyl 45.8 94 0.002 21.1 5.6 32 105-136 89-120 (139)
495 smart00101 14_3_3 14-3-3 homol 45.4 1.4E+02 0.0029 22.8 15.2 48 108-158 144-200 (244)
496 COG5600 Transcription-associat 45.3 1E+02 0.0023 25.1 6.3 63 62-124 181-252 (413)
497 KOG4563 Cell cycle-regulated h 45.3 54 0.0012 26.5 4.7 47 95-141 44-98 (400)
498 TIGR00985 3a0801s04tom mitocho 45.2 66 0.0014 22.3 4.7 30 96-125 94-124 (148)
499 KOG3783 Uncharacterized conser 45.1 2E+02 0.0044 24.7 14.8 93 41-133 250-344 (546)
500 PF12739 TRAPPC-Trs85: ER-Golg 44.4 1.8E+02 0.004 24.0 12.0 94 61-158 211-329 (414)
No 1
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.6e-30 Score=184.30 Aligned_cols=224 Identities=51% Similarity=0.809 Sum_probs=212.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
||.|+.+.|..+++++.+.+|++.++..+.|..+...|.+++|+++|+..++.+|++..++.....+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
+...++.++.|.++|..++.+|...|+|++|..|+++.+-+.|.++..+..+|.+++-+|...++.-|..+|.++++++|
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999987779999999999999999
Q ss_pred CCchhHHHhHHHHHHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCChhhhHHHHHHhhccC
Q 027158 161 GKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 226 (227)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
. +.++++|+.+|...+.+.++...+.+++ ..++..++...+.++| +.++.+...+++-|..+|+
T Consensus 223 ~-~~ral~GI~lc~~~la~~sk~~~k~~K~~a~~~l~~~aas~l~r~~-q~s~~~~d~i~~~l~~lKi 288 (289)
T KOG3060|consen 223 K-NLRALFGIYLCGSALAQISKAELKRKKDVAAPDLISLAASQLERIS-QKSKNKLDLITAALENLKI 288 (289)
T ss_pred H-hHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHhHHHHHHHHH-HhccchhhHHHHHHHHhcc
Confidence 4 9999999999999999999887777777 7899999999999999 6777888888888887775
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-25 Score=177.89 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
++|+.+|.+++...|++..++-.+|-+|..+|..+-|+..|+++++..|..+++++++|..+...|+..+|..+|++++.
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 33333333333333333333333333334445555555555555555666666666666666666666666666666666
Q ss_pred HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
+.|+++++..+||.+|.++|.+++|..+|.+++...|....++.+||.+|..+|+ +++|+.+|+.++.+.|. ...+
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn---l~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN---LDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc---HHHHHHHHHHHHhcCch-HHHH
Confidence 6666666666666666666666666666666666666666666666666666666 77777777777777773 6666
Q ss_pred HHhHHHHHHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCC--hhhhHHHHHH
Q 027158 167 LFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAP--AKLLLLTSAL 221 (227)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 221 (227)
+.+++..+..+++.+.+.....+. ...-...+-.+|.-+|+..++ ..+..++.-|
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 666666666666544332222111 111122334456666664443 3344444444
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3e-24 Score=171.57 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=90.0
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|+..+|..+|++++...|+++.+...+|.++..+|++++|..+|.++++.+|....++.++|.+|..+|++++|+.+|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 34444444444444444444444444445555444555555555555555455444455555555555555555555555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
.++.+.|..++++.++|..|-.+|+...|+.+|.+|+.++|...+++.+||.+|...|+ ..+|+..|+.++++.|+
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPD- 488 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPD- 488 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCC-
Confidence 55555555555555555555555555555555555555555555555555555555555 55555555555555554
Q ss_pred chhHHHhHHHHHHHHHh
Q 027158 163 NTKALFGICLCSSAIAQ 179 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~ 179 (227)
.+.++.++..|..-+.+
T Consensus 489 fpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCD 505 (966)
T ss_pred CchhhhHHHHHHHHHhc
Confidence 55555555555554444
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=9e-22 Score=166.61 Aligned_cols=175 Identities=16% Similarity=0.068 Sum_probs=138.3
Q ss_pred CChHHHHHHHHHHHHhC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQF---PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
++|++|+..|++++... |....++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777888888887653 566677778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
|+++++.+|+++.+|+.+|.+++..|++++|+.+|++++.++|++..++..+|.++..+|+ +++|+..|+++++..|
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS---IASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888888888888888 8888888888888877
Q ss_pred CCchhHHHhHHHHHHHHHhhhc
Q 027158 161 GKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
+ ++..+..++.++...+++.+
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHH
Confidence 4 77777777777777665544
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5e-21 Score=162.10 Aligned_cols=157 Identities=14% Similarity=0.004 Sum_probs=153.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
.+|++++|+..+++++..+|+....+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++++++|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+ +++|+..|++++.+.|.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999999885
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.8e-21 Score=162.46 Aligned_cols=176 Identities=11% Similarity=-0.107 Sum_probs=157.8
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 74 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 74 (227)
+.+++|+..|++++..+|+++.++..+|.++... +++++|...++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3567999999999999999999999999887643 4489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.+++..|+ +++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777878888999 9999999999
Q ss_pred HhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 155 TIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
++...|...+..+..++.++..+++...
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence 9988633477777888888877776554
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.5e-22 Score=161.41 Aligned_cols=174 Identities=18% Similarity=0.112 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
++.+.|+++|+++++.+|+...++.++|.-+....++|.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 45666667777777777766666666666666666677777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc
Q 027158 84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN 163 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~ 163 (227)
|++++|.+....+.+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.+++ +++|+..+++.-++.|+ +
T Consensus 515 A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~---~~eal~~LEeLk~~vP~-e 590 (638)
T KOG1126|consen 515 AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR---YVEALQELEELKELVPQ-E 590 (638)
T ss_pred hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---hHHHHHHHHHHHHhCcc-h
Confidence 7777777777777777777777777777777777777777777777777777777776 77777777777777764 6
Q ss_pred hhHHHhHHHHHHHHHhhh
Q 027158 164 TKALFGICLCSSAIAQLT 181 (227)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~ 181 (227)
..+++.++.++.++++..
T Consensus 591 s~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHHHHHHHHHHccch
Confidence 666666666666666533
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.89 E-value=5.4e-21 Score=136.23 Aligned_cols=175 Identities=16% Similarity=0.130 Sum_probs=160.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
|..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.+|++++|...
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 81 LNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 81 ~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
|++++.. .|..+..|-++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|+ +..|..++++....
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y~~Ar~~~~~~~~~ 202 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---YAPARLYLERYQQR 202 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---chHHHHHHHHHHhc
Confidence 9999963 455688999999999999999999999999999999999999999999999999 99999999999888
Q ss_pred cCCCchhHHHhHHHHHHHHHh
Q 027158 159 TGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~ 179 (227)
.+ .....++-.+.+...+++
T Consensus 203 ~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 203 GG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred cc-ccHHHHHHHHHHHHHhcc
Confidence 77 466666666666666665
No 9
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=154.62 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=166.4
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
|+.|+..+|.-.|+.++..+|.+.++|..+|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHc-----------------------------------------C--CCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 027158 81 LNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQAAFCYEE 117 (227)
Q Consensus 81 ~~~~l~~~-----------------------------------------p--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 117 (227)
+.+++... | .+++....||.+|...|+|++|+.||+.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 88876543 3 4566788999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 118 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 118 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
|+...|++...|..||-++....+ ..+|+..|++++++.|+ .+|+.|++++++..++.+.+
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHH
Confidence 999999999999999999999999 99999999999999996 99999999999999998653
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=3.2e-20 Score=138.28 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=156.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|++++|+..+++++...|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 82 NKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 82 ~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
++++... |.....+..+|.++...|++++|..++++++..+|.++.++..+|.++...|+ +++|...++++++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---YKDARAYLERYQQTY 199 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 9999853 45677899999999999999999999999999999999999999999999999 999999999999987
Q ss_pred CCCchhHHHhHHHHHHHHHh
Q 027158 160 GGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~ 179 (227)
|. .+..++..+.++...++
T Consensus 200 ~~-~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 200 NQ-TAESLWLGIRIARALGD 218 (234)
T ss_pred CC-CHHHHHHHHHHHHHHhh
Confidence 74 66666666555555443
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.9e-22 Score=159.28 Aligned_cols=196 Identities=16% Similarity=0.110 Sum_probs=164.1
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH
Q 027158 14 KVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 93 (227)
Q Consensus 14 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 93 (227)
+.+++.+|+.|..|-.+|+||..+++++.|+++|++++.++|....+|..+|.=+.....+|.|..+|+.++..+|.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 34455677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHH
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC 173 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (227)
+|+.+|.+|.++++++.|.-.|++|+.++|.+......+|.++.++|+ .++|+..|++|+.++|. ++...+..+.+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999999999996 87777777777
Q ss_pred HHHHHhhhcCCCccccc--hHHHHHHHHHHHHHHHHhhCChh
Q 027158 174 SSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAK 213 (227)
Q Consensus 174 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 213 (227)
...+.+..++....++- ...-....-.-+.++|++.+..+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 77766655332222111 00011112234666777666544
No 12
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.2e-20 Score=143.98 Aligned_cols=152 Identities=21% Similarity=0.146 Sum_probs=145.8
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
++-++|+.+|+++++.+|+...+|.++|.-|..+++...|++.|+++++.+|.+..+|+.+|..|-.++...=|+-+|++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
++++-|+|+..|..||.||.+.++.++|+.||.+++.....+..++..+|..|..+++ ..+|..+|++.++.
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEKYVEV 495 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999984
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-20 Score=144.91 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=159.4
Q ss_pred CCCChHHHHHHHHHHHHhCCC---chhhH----HH---------------------------HHHHHHHcCCHHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPE---SKRVG----RL---------------------------EGILLEAKGLWAEAEKAY 47 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~---~~~~~----~~---------------------------~a~~~~~~~~~~~A~~~~ 47 (227)
...++++|+..|+.+.+.+|- +.+.+ +. +|+.|...++.++|+.+|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 356899999999999999982 21111 11 344556668899999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 48 SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 48 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
+++++++|....+|..+|.=|..+.+...|++.|+++++++|.|-.+|+.||+.|..++...=|+.+|++|+...|+++.
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR 433 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
.|..+|.||.++++ .++|+..|.+++..+. .+..+++.++-.+.++.+..+
T Consensus 434 lw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 434 LWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999 9999999999999987 488899999999999887553
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=6.9e-20 Score=153.01 Aligned_cols=171 Identities=12% Similarity=-0.058 Sum_probs=156.2
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
+++++|...+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
+++++|.++..+..++.+++..|++++|+.++++++... |+++.++..+|.++...|+ +++|...+.++....|.
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~---~~eA~~~~~~~~~~~~~- 473 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK---HELARKLTKEISTQEIT- 473 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC---HHHHHHHHHHhhhccch-
Confidence 999999998887777878888999999999999999875 7889999999999999999 99999999998888774
Q ss_pred chhHHHhHHHHHHHHH
Q 027158 163 NTKALFGICLCSSAIA 178 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~ 178 (227)
.......++..+...+
T Consensus 474 ~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS 489 (553)
T ss_pred hHHHHHHHHHHHhccH
Confidence 6666666665555544
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=2.2e-19 Score=156.53 Aligned_cols=155 Identities=15% Similarity=-0.003 Sum_probs=98.1
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++++|..++++++...|++......++......|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455666666666666666555555444444444556666666666666666664 6666666666666666666666666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ +++|+..|++++++.|+
T Consensus 634 ~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 66666666666666666666666666666666666666666666666666666666666 66666666666666664
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=1.3e-18 Score=134.63 Aligned_cols=122 Identities=19% Similarity=0.101 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555554332 22445566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 126 (227)
|+++++++|++..+|.++|.++...|++++|+..|++++..+|+++
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 6666666666666666666666666666666666666666666554
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=8.3e-19 Score=148.93 Aligned_cols=156 Identities=15% Similarity=0.042 Sum_probs=94.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE----AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
.|++++|+..+++++...|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4555666666666666666666666666666666666553 566666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+ +++|+..|+++++.
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---~deA~~~l~~al~~ 381 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK---TSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666555555555555666666 66666666666666
Q ss_pred cCC
Q 027158 159 TGG 161 (227)
Q Consensus 159 ~~~ 161 (227)
.|+
T Consensus 382 ~P~ 384 (656)
T PRK15174 382 RAS 384 (656)
T ss_pred Chh
Confidence 554
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.7e-18 Score=147.09 Aligned_cols=175 Identities=17% Similarity=0.081 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH----H
Q 027158 3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT----A 77 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~----A 77 (227)
.|++++|+..+++++..+| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ |
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 5777777777777777765 3334445567788888999999999999999999999999999999999999885 7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
+..|++++..+|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+ +++|+..|++++.
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA~~~l~~al~ 346 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCchhHHHhHHHHHHHHHhhh
Q 027158 158 LTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
.+|+ ........+.++...++..
T Consensus 347 ~~P~-~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 347 EKGV-TSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred hCcc-chHHHHHHHHHHHHCCCHH
Confidence 8885 5545555555565555433
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=4.9e-19 Score=159.05 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=149.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--------------LHKRRVAI 67 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~ 67 (227)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.. ....+|.+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999887642 12345778
Q ss_pred HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------
Q 027158 68 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV------------ 135 (227)
Q Consensus 68 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------ 135 (227)
+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|.+..++..++.+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999887766555544
Q ss_pred ------------------------------HHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 136 ------------------------------LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 136 ------------------------------~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
+...|+ +++|+..|+++++++|+ ++..++.++.++...++...
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~---~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK---WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 334577 89999999999999995 88888888888887666544
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.84 E-value=2.9e-19 Score=123.62 Aligned_cols=126 Identities=14% Similarity=0.042 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158 10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89 (227)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p 89 (227)
...+++++..+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35667777777664 445677777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158 90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 138 (227)
Q Consensus 90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 138 (227)
.++.+++++|.++...|++++|+..|++++...|+++.++..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777666666544
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.3e-18 Score=151.74 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=161.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|++++|+..++++....|. ...+..+|.++...|++++|..+++++++.+|.+...+..++......|++++|+..|
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 478999999999998776554 4557888999999999999999999999999999888887777777889999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++++.+|+ +.++..+|.++...|++++|+.+|++++..+|+++.++.++|.++...|+ +++|+..|+++++..|+
T Consensus 600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---IAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Confidence 999999996 99999999999999999999999999999999999999999999999999 99999999999999996
Q ss_pred CchhHHHhHHHHHHHHHhhhc
Q 027158 162 KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~ 182 (227)
++.+++.++.++..+++...
T Consensus 676 -~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 676 -DPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHH
Confidence 99999999999998887553
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=7e-18 Score=135.69 Aligned_cols=177 Identities=16% Similarity=0.048 Sum_probs=142.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTA 77 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A 77 (227)
..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 35788889999999999999888888889999999999999999888888754322 25677888888888888889
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158 78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNILLAKKYY 152 (227)
Q Consensus 78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~~~~A~~~~ 152 (227)
+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++...|+ +++|+..|
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~ 203 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD---LDAARALL 203 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 8888888888888888888888888888888888888888888777653 245677888888888 88888888
Q ss_pred HHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 153 ASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
+++++..|+ ....++.++.++...++..+
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHH
Confidence 888888885 66677777777777665444
No 23
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=2.4e-18 Score=122.84 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 104 (227)
.+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+.+.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158 105 LQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (227)
+|+|++|...|++|+.. .|..+.++.++|.|..+.|+ ++.|..+|+++++.+|+ .+.....++.....
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~ 185 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQ-FPPALLELARLHYK 185 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcC-CChHHHHHHHHHHh
Confidence 99999999999999964 35667899999999999999 99999999999999996 66565555544443
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=4e-18 Score=149.53 Aligned_cols=175 Identities=22% Similarity=0.202 Sum_probs=119.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|++++|..+++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777776665 45556677777777777777777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
++++..+|+++.++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|+ .+|+.++++++...|+
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCCC
Confidence 777777777777777777777777777777777777777777777777777776666665 3377777777776664
Q ss_pred CchhHHHhHHHHHHHHHhhhc
Q 027158 162 KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~ 182 (227)
++..+..++.++...+++.+
T Consensus 836 -~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 836 -IPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred -CcHHHHHHHHHHHHcCCHHH
Confidence 55566666666655555443
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=4.7e-18 Score=149.11 Aligned_cols=174 Identities=16% Similarity=0.116 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++++|...|++++...|+++.++..++.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..++
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555555555555555555665555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
+++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|+ +++|+..|+++++..|.
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~- 633 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPD- 633 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-
Confidence 55555555555555666666666666666666666666666666666666666666666 66666666666666664
Q ss_pred chhHHHhHHHHHHHHHhh
Q 027158 163 NTKALFGICLCSSAIAQL 180 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~ 180 (227)
++..+..++.++...++.
T Consensus 634 ~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 634 SALALLLLADAYAVMKNY 651 (899)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 555566666665554443
No 26
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=2.2e-18 Score=119.21 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 44 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 44 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999985 557899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158 124 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 177 (227)
Q Consensus 124 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (227)
+++.+++++|.++...|+ +++|+..|.+++...|+ ++..+...+.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999996 777665555554433
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=6.5e-18 Score=151.86 Aligned_cols=177 Identities=15% Similarity=0.072 Sum_probs=156.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.+++.++..+...+++++|+..+
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999998888887777777777776665
Q ss_pred HHH----------------------------------------HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158 82 NKY----------------------------------------LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 82 ~~~----------------------------------------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 121 (227)
+++ ++..|.++..+..+|.++...|++++|+.+|++++..
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 542 2347888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 122 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 122 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
+|+++.++..++.++...|+ +++|+..|+++++..|+ ++..+..++.++...++..+
T Consensus 633 ~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999 99999999999999885 77788888888877665443
No 28
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=1.4e-17 Score=129.02 Aligned_cols=173 Identities=16% Similarity=0.030 Sum_probs=155.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh--HHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF--PTAIE 79 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--~~A~~ 79 (227)
.+++++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|.+..+|..++.++...|+. ++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 468899999999999999999999999999999998 689999999999999999999999999999988874 78899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHH
Q 027158 80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI----LLAKKYYAST 155 (227)
Q Consensus 80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~----~~A~~~~~~~ 155 (227)
++.++++.+|.+..+|...+.++...|+|++++.++.++++.+|.+..+|..++.++...|..+.+ ++++.+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877321113 5788888999
Q ss_pred hhhcCCCchhHHHhHHHHHHH
Q 027158 156 IDLTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~ 176 (227)
+..+|+ +..+|..+.-++..
T Consensus 210 I~~~P~-N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 210 ILANPR-NESPWRYLRGLFKD 229 (320)
T ss_pred HHhCCC-CcCHHHHHHHHHhc
Confidence 999996 77777766666554
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.81 E-value=8.1e-18 Score=126.31 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=87.7
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AW 95 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 95 (227)
..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4455555556666666666666666666665555543 34555566666666666666666666666555543 45
Q ss_pred HHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHHHHHH
Q 027158 96 RELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAKK 150 (227)
Q Consensus 96 ~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~~~~A~~ 150 (227)
+.+|.++... |++++|+..|++++..+|++..++ ..+|.+++..|+ +.+|+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~ 187 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAIN 187 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHH
Confidence 5555555544 555566666666665555553321 244555555566 666666
Q ss_pred HHHHHhhhcCC--CchhHHHhHHHHHHHHHhhhc
Q 027158 151 YYASTIDLTGG--KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 151 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 182 (227)
.|+++++..|+ ....+++.++.++..+++..+
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 66666655443 124555555555555555443
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.4e-18 Score=131.23 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
.+..+-...|+.+.+.+|.++.+++.+|.+++-.+++++|+.-|+++++++|++..++..++....+++++++++..|+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee 453 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE 453 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHh
Q 027158 84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYT-LGGVDNILLAKKYYASTI 156 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~~~~A~~~~~~~~ 156 (227)
+.+.+|+.++.+...|.++..+++|++|++.|.+++.+.|. ++..+...|.+..+ .++ +..|+..+++++
T Consensus 454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d---~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED---INQAENLLRKAI 530 (606)
T ss_pred HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh---HHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555554 33333222222222 123 555555555555
Q ss_pred hhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 157 DLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
+++|. .-.++.+|+....+.++..
T Consensus 531 e~Dpk-ce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 531 ELDPK-CEQAYETLAQFELQRGKID 554 (606)
T ss_pred ccCch-HHHHHHHHHHHHHHHhhHH
Confidence 55553 4445555555555444433
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=1.5e-18 Score=133.65 Aligned_cols=179 Identities=19% Similarity=0.092 Sum_probs=117.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIE 79 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~ 79 (227)
..+++++|..++.+.....+ ++..+.....++...++++++...+.++.... |.++.+|..+|.++...|+.++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45788899998888877664 45666677778888999999999998877654 6778889999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.|+++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|+ +++|+.+|+++++.+
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccc
Confidence 99999999999999999999999999999998888888888888888888999999999999 999999999999999
Q ss_pred CCCchhHHHhHHHHHHHHHhhhcCCC
Q 027158 160 GGKNTKALFGICLCSSAIAQLTKGRN 185 (227)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 185 (227)
|+ ++..+..++.+....++...+..
T Consensus 245 p~-d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 245 PD-DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TT--HHHHHHHHHHHT----------
T ss_pred cc-ccccccccccccccccccccccc
Confidence 95 88888899999888888665543
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=3.6e-17 Score=121.77 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=144.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIE 79 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~ 79 (227)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++... |.....+..+|.++...|++++|..
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999853 5567788999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.+.+++..+|.++.++..+|.++...|++++|+.++++++...|.++..+..++.++...|+ .+.|....+.+....
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999 999999888776654
Q ss_pred C
Q 027158 160 G 160 (227)
Q Consensus 160 ~ 160 (227)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 3
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2.8e-17 Score=132.19 Aligned_cols=155 Identities=13% Similarity=0.054 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
.|++++|+..+++++...+.. ..++..+|.++...|++++|...|.++++.+|.+..++..++.++...|++++|+
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHH
Confidence 345555555555554432111 1334445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 79 EWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 79 ~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
..++++++..|.+. ..+..+|.++...|++++|+.+|++++..+|++..++..+|.++...|+ +++|+..|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 238 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD---YAAAIEALE 238 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC---HHHHHHHHH
Confidence 55555555444331 1334445555555555555555555555555555555555555555555 555555555
Q ss_pred HHhhhcC
Q 027158 154 STIDLTG 160 (227)
Q Consensus 154 ~~~~~~~ 160 (227)
+++..+|
T Consensus 239 ~~~~~~p 245 (389)
T PRK11788 239 RVEEQDP 245 (389)
T ss_pred HHHHHCh
Confidence 5555444
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=4.8e-18 Score=130.77 Aligned_cols=150 Identities=27% Similarity=0.322 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
++++++...++++.... |.++.++..+|.++...|++++|+..|+++++.+|+++.+...++.++...|+.+++...+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 44455555555544322 3444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
.......|.++..|..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ .++|..++++++
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A~~~~~~~~ 275 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---cccccccccccc
Confidence 555554455555555555555555555555555555555555555555555555555555 555555555444
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-17 Score=130.40 Aligned_cols=156 Identities=15% Similarity=0.053 Sum_probs=152.3
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++-.|...|+.++..+|.....++.+|..|....+..+-...|+.+..++|+++++|+.+|.+++-.+++++|+..|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++.++|++.-++..++.+.+++++++++...|+.+.+..|+.+.++...|.++..+++ |+.|.+.|.+++++.|.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq---Fd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ---FDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh---HHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999995
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.78 E-value=6.5e-17 Score=117.58 Aligned_cols=122 Identities=10% Similarity=0.032 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHccc--HHHHHH
Q 027158 37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAF 113 (227)
Q Consensus 37 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 113 (227)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.++++++.+|+++.++..+|..++..|+ +++|+.+|++++++.|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999 99999999999999986
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.78 E-value=4.9e-17 Score=118.22 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=117.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE 79 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~ 79 (227)
.++.++++..+++.+..+|++...|..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 80 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 80 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
.++++++.+|+++.++..+|..++..|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999886543
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.77 E-value=2.3e-16 Score=133.17 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
.+++.-+......+|.++.+++++|.+..+.|.+++|..+++.+++..|++..++..++.++.+.+++++|...+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34555566666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ .++|...|+++++...+ -.+.
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~~~ 224 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GARK 224 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-chHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999775 3344
Q ss_pred H
Q 027158 167 L 167 (227)
Q Consensus 167 ~ 167 (227)
+
T Consensus 225 ~ 225 (694)
T PRK15179 225 L 225 (694)
T ss_pred H
Confidence 3
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-16 Score=125.54 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 85 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 85 (227)
-+.|+..|..+.+..|........+|.-|.+.++++.|..+|.+++.+.|.++.++..+|.+.+..+.+.+|..+|+.++
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 34555555555555555555555555566666677777777777777788888888888888888888888888888877
Q ss_pred HHcCC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 86 ETFMA-------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 86 ~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
..-+. ....+.+||.++.+.+.+++|+.+|++++...|.++.++..+|.+|..+|+ ++.|+.+|.+++-+
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALAL 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhc
Confidence 43221 245688999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCC
Q 027158 159 TGG 161 (227)
Q Consensus 159 ~~~ 161 (227)
.|+
T Consensus 519 ~p~ 521 (611)
T KOG1173|consen 519 KPD 521 (611)
T ss_pred CCc
Confidence 996
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.76 E-value=1.7e-16 Score=119.15 Aligned_cols=156 Identities=18% Similarity=0.083 Sum_probs=140.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc----
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQ---- 71 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~---- 71 (227)
..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. +++.+|.++...
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 46899999999999999999876 57899999999999999999999999999998875 688999999876
Q ss_pred ----CChHHHHHHHHHHHHHcCCCHHHH-----------------HHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HH
Q 027158 72 ----GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAAFCYEELILSQPTV---PL 127 (227)
Q Consensus 72 ----~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 127 (227)
|++++|+..|++++..+|++..++ ..+|.+++..|++.+|+..+++++...|++ +.
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE 204 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH
Confidence 789999999999999999986543 367888999999999999999999997765 57
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
+++.+|.++...|+ +++|..+++......|
T Consensus 205 a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 205 ALARLVEAYLKLGL---KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 99999999999999 9999999888776655
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.75 E-value=2.6e-16 Score=107.96 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 45 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 45 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
+.+++++..+|++..+...+|.++...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
++..++.+|.++...|+ +++|+..|+++++++|+
T Consensus 84 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE---PESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 88888888888888888 88888888888888885
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.74 E-value=2.3e-16 Score=108.27 Aligned_cols=119 Identities=18% Similarity=0.054 Sum_probs=114.0
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 11 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
..+++++...|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158 91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999887643
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.5e-16 Score=125.20 Aligned_cols=177 Identities=14% Similarity=0.025 Sum_probs=155.1
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++++|..+|-++...+|....+|...|..+...|+.++|+..|..|-+.-|..-.....+|.-|...++++.|..+|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 47788888888888888888888888888888888888888888888888888777777778888888899999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PT---VPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
+++.+.|.+|-....+|.+.+..+.|.+|..+|+.++..- +. -...+.++|.++.+++. +.+|+..|+++
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKA 481 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHH
Confidence 9999999999999999999999999999999999998432 22 23568999999999999 99999999999
Q ss_pred hhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158 156 IDLTGGKNTKALFGICLCSSAIAQLTKG 183 (227)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (227)
+.+.|. ++..+.+++.++..+++..++
T Consensus 482 L~l~~k-~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 482 LLLSPK-DASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHcCCC-chhHHHHHHHHHHHhcChHHH
Confidence 999996 999999999999999987764
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=2.9e-15 Score=129.78 Aligned_cols=176 Identities=12% Similarity=-0.040 Sum_probs=154.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPT 76 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~ 76 (227)
..|++++|+..|++++...|..| .+...+|.++...|++++|+..|++++..+|.+ ......++..+...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 35789999999999998865433 244456999999999999999999999988876 3567778888899999999
Q ss_pred HHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 77 AIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 77 A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
|+..++++....|.. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 999999999987731 35778899999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 142 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
+++|+..+++++.+.|+ +...++..+.+....+++.
T Consensus 409 ---~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 409 ---PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWR 444 (765)
T ss_pred ---HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHH
Confidence 99999999999999996 8889999998888877644
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=9.7e-16 Score=132.67 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=146.4
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|+.++|+..+.++....|....++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999988898998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
++++.+|+++. +..+|.++...|++++|+..+++++...|+++.++..++.++...|. .+.|+..++++.. .|
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHhCCC-CH
Confidence 99999999999 99999999999999999999999999999999999999999999999 9999999987776 54
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=126.59 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=142.7
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN----------------------------- 54 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------------- 54 (227)
++-..|+..++++++++|++..++..+|..|...|.-.+|..++.+-+...
T Consensus 333 E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~ 412 (579)
T KOG1125|consen 333 ENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAH 412 (579)
T ss_pred cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHH
Confidence 445678999999999999999999999999999988888888877775543
Q ss_pred ------------C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 55 ------------P--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 55 ------------p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
| .++++...||.+|...|+|++|+.+|+.++...|++...|..||-.+..-.+..+|+..|++|++
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 2 34778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 121 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+.|....+++++|.++..+|. |++|..+|-.++.+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhc
Confidence 999999999999999999999 99999999999998764
No 47
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=116.50 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
+-.-|.-+...++|.+|+..|.++|.++|+++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34456677777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
++.+|+..|++++.++|++..++.+|..+-..+++
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888777777776
No 48
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.4e-15 Score=110.79 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|...+..|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34555566666788999989 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
..|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..++-.|+ ++.|..++..+....+. +.+.
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d~~v 204 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-DSRV 204 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-chHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999988774 8889
Q ss_pred HHhHHHHHHHHHhhhcC
Q 027158 167 LFGICLCSSAIAQLTKG 183 (227)
Q Consensus 167 ~~~l~~~~~~~~~~~~~ 183 (227)
..+++++....+++..+
T Consensus 205 ~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 205 RQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHHHHhhcCChHHH
Confidence 99999999888875543
No 49
>PLN02789 farnesyltranstransferase
Probab=99.70 E-value=4e-15 Score=115.40 Aligned_cols=171 Identities=11% Similarity=0.041 Sum_probs=150.2
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.+++++..+++++..+|++..+|..++.++...|+. ++++.++.++++.+|.+..+|..++.++...|++++++.++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 578999999999999999999999999999988874 788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Q 027158 83 KYLETFMADHDAWRELAEIYVSL---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYTLGG-VDNILLAKKYYAS 154 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~~~~A~~~~~~ 154 (227)
++++.+|.+..+|...+.+.... |.+ +.++.+..+++..+|++..+|..++.++...+. .....+|...+.+
T Consensus 167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 99999999999999999998776 333 578999999999999999999999999988332 0116779999999
Q ss_pred HhhhcCCCchhHHHhHHHHHHH
Q 027158 155 TIDLTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~ 176 (227)
+++.+|. ...++.-++-++..
T Consensus 247 ~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 247 VLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred hhcccCC-cHHHHHHHHHHHHh
Confidence 9998885 67677677766664
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=3.6e-15 Score=115.43 Aligned_cols=125 Identities=15% Similarity=0.047 Sum_probs=115.8
Q ss_pred HcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHH
Q 027158 36 AKGLWAEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA 111 (227)
Q Consensus 36 ~~~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A 111 (227)
..+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34667889999999997443 33678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158 112 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 164 (227)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~ 164 (227)
+..|+++++++|++..++.++|.+++..|+ +++|+..|+++++.+|+ ++
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~-~~ 166 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPN-DP 166 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CH
Confidence 999999999999999999999999999999 99999999999999996 54
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=9.3e-15 Score=125.65 Aligned_cols=173 Identities=10% Similarity=-0.070 Sum_probs=146.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|+++.|+..|++++..+|.++.....+..++...|+.++|+.++++++...|........+|.++...|++++|++.|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47999999999999999999986444477788888899999999999999444555566666688999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++ ..+|+..|+++++..|+
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999986655 555555555666 77799999999999996
Q ss_pred CchhHHHhHHHHHHHHHh
Q 027158 162 KNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~ 179 (227)
+...+..+..+....+-
T Consensus 202 -n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 202 -SEEVLKNHLEILQRNRI 218 (822)
T ss_pred -CHHHHHHHHHHHHHcCC
Confidence 88787777766666443
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.68 E-value=7.2e-15 Score=107.11 Aligned_cols=151 Identities=15% Similarity=0.020 Sum_probs=140.8
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|+-+.+.....++...+|.+..++...|....+.|++..|+..++++....|+++.+|..+|.+|.+.|++++|...|.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 35666777788888888899998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.-..|+ +++|...-.+-+
T Consensus 159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~---~~~A~~i~~~e~ 229 (257)
T COG5010 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD---FREAEDIAVQEL 229 (257)
T ss_pred HHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---hHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999 999987665443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=5.1e-16 Score=116.40 Aligned_cols=170 Identities=13% Similarity=0.055 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 84 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 84 (227)
+...|+..+.+.++.+|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+-.++++-|+.+|++.
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 34455555555555556555555555666666666666666666666666666555555555555566666666666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 85 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+++.-.+++.++++|.|++.-++++-++..|++|+.... .-..+|+++|.+..-.|+ +.-|...|+-++..+|+
T Consensus 351 LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 351 LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcc
Confidence 666666666666666666666666666666666664432 123456666666666666 66666666666666553
Q ss_pred CchhHHHhHHHHHHHHH
Q 027158 162 KNTKALFGICLCSSAIA 178 (227)
Q Consensus 162 ~~~~~~~~l~~~~~~~~ 178 (227)
+..++.++++...+-+
T Consensus 428 -h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 428 -HGEALNNLAVLAARSG 443 (478)
T ss_pred -hHHHHHhHHHHHhhcC
Confidence 5555555555544433
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.7e-16 Score=117.16 Aligned_cols=164 Identities=14% Similarity=0.070 Sum_probs=152.0
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
++++++|.++|+.+++..|.+.++...+|..|+-.++.+-|+.+|++.+.+.-.++..+.++|.|++..++++-++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 83 KYLETFMA---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 83 ~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
+++....+ -++.|+++|.+....|++.-|-.+|+-++..+|++..++.++|..-.+.|+ ..+|..++..+-...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhC
Confidence 99987542 378999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCchhHHHhH
Q 027158 160 GGKNTKALFGI 170 (227)
Q Consensus 160 ~~~~~~~~~~l 170 (227)
|+ -....+++
T Consensus 460 P~-m~E~~~Nl 469 (478)
T KOG1129|consen 460 PD-MAEVTTNL 469 (478)
T ss_pred cc-ccccccce
Confidence 96 44444443
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=9.4e-15 Score=122.59 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=129.8
Q ss_pred CCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~ 78 (227)
.|+|..|+.+|..++..+|. -+.+.+.+|.|++..|+.+.|+..|.+++.++|++..++..||.+-.... .+..+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence 56788888888888888874 45666777888888888888888888888888888888777777666544 366777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
..+.++...+|.+|.+...|+..++..|+|..+..+...++...... ...++.+|.+|+.+|+ |++|..+|.++
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd---~ekA~~yY~~s 333 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD---FEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHH
Confidence 77788888888888777777777777777777777777777554333 2347777888888887 88888888888
Q ss_pred hhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 156 IDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
++.+|++..-.++|++..+...++..
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHH
Confidence 87777644666777777666655533
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=5.2e-15 Score=101.09 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=99.5
Q ss_pred HhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158 51 LEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 51 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
.... +++-+..+.+|..+...|++++|...|+-+..++|.++..|++||.++...|+|++|+.+|..++.++|++|.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3446 677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 130 LAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.+.|.|+...|+ .+.|...|+.++....
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999999873
No 57
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=111.45 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 138 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 138 (227)
.-+..-|.-+...++|.+|+..|.++|+++|.++..|++.|.+|.+.|+++.|++-++.++.++|.+..+|.++|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 139 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 139 ~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
+|+ +.+|++.|+++++++|+ +...+.++..+...+.+..
T Consensus 162 ~gk---~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGK---YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCc---HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence 999 99999999999999996 8878888888888877744
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-14 Score=112.15 Aligned_cols=156 Identities=17% Similarity=0.076 Sum_probs=144.5
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------------VLHKRRVAIAKA 70 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~ 70 (227)
.|++++|....-.+++.++.+..+++..|.++.-.++.+.|+.+|++++.++|+.. ..+...|+-.++
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999763 446778888999
Q ss_pred cCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 027158 71 QGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 146 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 146 (227)
.|++..|.++|..+|.++|++ +..|.+.+.+..+.|+.++|+.-++.++.++|....++...|.|+..+++ |+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~---~e 338 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK---WE 338 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999987 45788999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHhhhcCC
Q 027158 147 LAKKYYASTIDLTGG 161 (227)
Q Consensus 147 ~A~~~~~~~~~~~~~ 161 (227)
+|++.|+++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999998764
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=3.4e-14 Score=114.46 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=112.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------------- 53 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------- 53 (227)
+.|+++.|...++++.+..|+++.++..++.++...|+|++|+..+.+..+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777777777777777777777777777777777666444443321
Q ss_pred --------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 54 --------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 54 --------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
.|+++.+...++..+...|+.++|...++++++ .|.++......+.+ ..+++++++..+++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 223444555556666666777777777777666 33444443333333 3377777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158 120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (227)
+.+|+++..+..+|.++...|+ +++|..+|+++++..|+ . ..+..++.++...++
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~-~-~~~~~La~~~~~~g~ 376 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPD-A-YDYAWLADALDRLHK 376 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC-H-HHHHHHHHHHHHcCC
Confidence 7788888888888888888888 88888888888888884 3 334456666666554
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=8.4e-14 Score=112.92 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=155.1
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+++.++|+.+++..++.+|+.+..|.++|.++.++++.+.|...|...++..|..+..|..++.+--..|....|...+.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------------------------------HHHHH
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------------------------------YHLAY 132 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------------~~~~l 132 (227)
++.-.+|.++..|......-.+.|..+.|.....+|++-.|.+.. ++..+
T Consensus 744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 999999999999999999999999999999999999988776543 67778
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158 133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 178 (227)
Q Consensus 133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (227)
|..++...+ +++|.+.|.++++.+|+ +..+|..+.....+.+
T Consensus 824 a~lfw~e~k---~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 824 AKLFWSEKK---IEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence 888888888 99999999999999997 5555544444444444
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=113.51 Aligned_cols=170 Identities=19% Similarity=0.097 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
|++++|.+.|+.++..+.....+++.+|..+..+|+.++|+.+|-+.-.+--++..++..++.+|....+..+|++++-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 45555555555555555445555555555555555555555555444444444444444555555544455555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc----------------------------------ccHHHHHHHHHHHHhhCCCCHHHH
Q 027158 84 YLETFMADHDAWRELAEIYVSL----------------------------------QMYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~----------------------------------~~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
+..+-|++|..+..||.+|-+. .=+++|+.+|+++--+.|+...+.
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 4444444444444444444444 444455555555555555555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158 130 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 177 (227)
Q Consensus 130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (227)
..++.|+.+.|+ |++|...|+......|. +...+.-+......+
T Consensus 664 lmiasc~rrsgn---yqka~d~yk~~hrkfpe-dldclkflvri~~dl 707 (840)
T KOG2003|consen 664 LMIASCFRRSGN---YQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHhccc---HHHHHHHHHHHHHhCcc-chHHHHHHHHHhccc
Confidence 555555555555 55555555555555553 444444444444333
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=6.8e-14 Score=104.81 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=133.5
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHH-------
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKA------- 70 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~------- 70 (227)
..+.++|+..|-.+++.+|...+++..+|+.+...|+.+.|+.+-+..++ .|+. ..+...+|.-|+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35678999999999999999999999999999999999999988777665 3332 1233444444444
Q ss_pred ---------------------------cCChHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158 71 ---------------------------QGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 71 ---------------------------~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a 118 (227)
..+|++|+..-++...+.|.. +..++.|+..+....+.+.|...+.+|
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 445555555555555555544 456778888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 119 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 119 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
++.+|++..+-..+|.+....|+ +..|++.++.+++.+|+.-..+.-.+..||.++++..
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 88888888888888999988888 9999999999998888755566667778888877643
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1.4e-13 Score=114.89 Aligned_cols=153 Identities=19% Similarity=0.121 Sum_probs=128.0
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++++|..++..++.++|.++.+++.+|.+|.+.|+.+++...+-.+-.++|.+.+.|..++.....+|++++|+-+|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 47888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
++++.+|.+-...+..+.+|.+.|+...|...|.+++...|... ......+..+...++ -+.|+..+..++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS 308 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888321 234445667777777 7888888888887
Q ss_pred h
Q 027158 158 L 158 (227)
Q Consensus 158 ~ 158 (227)
.
T Consensus 309 ~ 309 (895)
T KOG2076|consen 309 K 309 (895)
T ss_pred h
Confidence 4
No 64
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=2.4e-14 Score=97.90 Aligned_cols=110 Identities=15% Similarity=-0.010 Sum_probs=102.1
Q ss_pred HHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH
Q 027158 16 LQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 94 (227)
Q Consensus 16 ~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 94 (227)
+.... ++.....+.+|..+...|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 33445 66777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
+.++|.+++..|+.+.|...|+.++.....+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999876433
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.8e-14 Score=108.36 Aligned_cols=172 Identities=18% Similarity=0.099 Sum_probs=143.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH-
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW- 80 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~- 80 (227)
+.+++..|+.+.++.++.+|++..++++.|..+.+.|+..+|+-.|+.+..+.|...++|..+..+|...|++.+|...
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998876555444
Q ss_pred -----------------------------------HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 81 -----------------------------------LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 81 -----------------------------------~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
+++++.+.|....+...+|.++...|.+..++.++++.+...|+
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D- 470 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD- 470 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-
Confidence 44455555666666777788888888888888888888877765
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158 126 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 178 (227)
Q Consensus 126 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (227)
...+..+|+++...+. +++|..+|..++.++|. +.+...|+-..-....
T Consensus 471 ~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKSDD 519 (564)
T ss_pred cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhccC
Confidence 4567888888888888 99999999999999995 8888888766555443
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.63 E-value=2.7e-14 Score=113.05 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
+...|..++..|++++|+.+|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 027158 107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 139 (227)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 139 (227)
+|++|+..|++++.++|+++.+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888877777775554
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1e-13 Score=116.51 Aligned_cols=173 Identities=9% Similarity=0.023 Sum_probs=145.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
++|+.+.|+..|.++++++|.+..++..+|.+-.... .+..+...+.++...+|.+|.++..++..++-.|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 4577788999999999999988888888887776654 4678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 79 EWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 79 ~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
.+..-++...-.. ++.++.+|.+|..+|+|++|..+|.++++.+|++ ...++.+|..+...|+ ++.|...|++
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~fEk 367 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHHHHH
Confidence 9988888765333 4568899999999999999999999999998888 6778889999999999 9999999999
Q ss_pred HhhhcCCCchhHHHhHHHHHHHHH
Q 027158 155 TIDLTGGKNTKALFGICLCSSAIA 178 (227)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~~ 178 (227)
+++..|+ +...+.-++..+....
T Consensus 368 v~k~~p~-~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 368 VLKQLPN-NYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHhCcc-hHHHHHHHHhHHHhhh
Confidence 9999996 7777777777776653
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=8.1e-14 Score=113.09 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=143.0
Q ss_pred CCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRVA 66 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~ 66 (227)
.|+|++|+..+..+++. .|.-......+|.+|...+++++|+..|++++.. +|.-+.++.+|+.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 58999999999999998 3443444556899999999999999999999986 4445678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----CCC---HHHHH
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-----PTV---PLYHL 130 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~ 130 (227)
.|...|++++|..++++++++... -+..+.+++.++...+++++|..++++++++. +++ +....
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 999999999999999999987432 25578899999999999999999999999653 233 45799
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-------CchhHHHhHHHHHHHHHh
Q 027158 131 AYADVLYTLGGVDNILLAKKYYASTIDLTGG-------KNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~ 179 (227)
++|.+|+.+|+ +.+|.+.|++++.+... .....++.++..+.+.+.
T Consensus 372 nl~~l~~~~gk---~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 372 NLAELYLKMGK---YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHhcc---hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 99999999999 99999999999988532 123455666666666554
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=7.8e-14 Score=109.14 Aligned_cols=151 Identities=18% Similarity=0.087 Sum_probs=119.6
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---------
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN--------- 73 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~--------- 73 (227)
+|+.++|+.+|-++-...-++..+++.++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 46777777777777776667777777777777777777777777777777777777777777776666554
Q ss_pred -------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 74 -------------------------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 74 -------------------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
+++|+.+|+++--+.|+.......++.|+.+.|+|..|.+.|+..-+..|.+...
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 6778888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
+..+..+.-.+| ..++.++-.+.-+
T Consensus 697 lkflvri~~dlg----l~d~key~~klek 721 (840)
T KOG2003|consen 697 LKFLVRIAGDLG----LKDAKEYADKLEK 721 (840)
T ss_pred HHHHHHHhcccc----chhHHHHHHHHHH
Confidence 888888888877 4556555544433
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.3e-13 Score=111.59 Aligned_cols=173 Identities=13% Similarity=0.068 Sum_probs=105.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------------- 53 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------- 53 (227)
+.|+++.|...++.+.+..|+++.++..++.++...|+|++|...+.+..+.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567777777777777777777777777777777777777666655555432
Q ss_pred ----------CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHcccHHHHHHHHHH
Q 027158 54 ----------NP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMYKQAAFCYEE 117 (227)
Q Consensus 54 ----------~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~ 117 (227)
.| +++.++..++..+...|++++|...++++++.+|++.... ..........++.+.++..+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 12 2344455555666666666666666666666666665421 2222222334566666666666
Q ss_pred HHhhCCCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158 118 LILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 118 al~~~p~~~--~~~~~la~~~~~~g~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (227)
+++..|+++ ..+..+|.+++..|+ +++|.++|+ .+++..|+ .. ....++.++..+++
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~-~~-~~~~La~ll~~~g~ 385 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD-AN-DLAMAADAFDQAGD 385 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC-HH-HHHHHHHHHHHcCC
Confidence 666667666 666667777777777 777777777 45556663 22 23355555555443
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=7.7e-14 Score=111.00 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=125.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
.|++++|...+++++..+|++..++.. +..+...| ....+...+......+|....++..+|.++...|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 578888999999999888888766654 44444444 4444444444444567777778888899999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
..++++++..|+++.++..+|.++...|++++|+.++++++...|.++ ..+..+|.++...|+ +++|+..|++
T Consensus 135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~ 211 (355)
T cd05804 135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD---YEAALAIYDT 211 (355)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877443 346689999999999 9999999999
Q ss_pred HhhhcC
Q 027158 155 TIDLTG 160 (227)
Q Consensus 155 ~~~~~~ 160 (227)
++...|
T Consensus 212 ~~~~~~ 217 (355)
T cd05804 212 HIAPSA 217 (355)
T ss_pred Hhcccc
Confidence 987666
No 72
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.6e-14 Score=101.24 Aligned_cols=139 Identities=18% Similarity=0.099 Sum_probs=128.3
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+|++++|+++|+.++..+|.+..++...-.+...+|+..+|++.+...++..+.|.++|..++.+|...|++.+|.-+++
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 58899999999999999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
+.+-+.|.++..+..+|.+++-+| ++.-|..+|.++++++|.+..+++.+-.+....-+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 57889999999999999888888877666555444
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.61 E-value=1.6e-13 Score=103.78 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=149.0
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|+..-|+.++..+++..|.+...+.+.+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHH--------------------------------------------------HHHHHHHHcccHHHHH
Q 027158 83 KYLETFMADHDAWR--------------------------------------------------ELAEIYVSLQMYKQAA 112 (227)
Q Consensus 83 ~~l~~~p~~~~~~~--------------------------------------------------~la~~~~~~~~~~~A~ 112 (227)
.+++++|++...+- .+..|+...|++-+|+
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 99999988743221 3345555668889999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158 113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 178 (227)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (227)
..+.+++..+|++..++...|.+|..-.. |+.|+..|+++.+.+++ +.++.-|+-.+..-..
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~s-n~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNES-NTRAREGLERAKRLKK 389 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888 99999999999999995 8777777766554443
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.60 E-value=4.2e-13 Score=113.63 Aligned_cols=138 Identities=10% Similarity=-0.026 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 41 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 41 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
.+++.-.......+|.++.++..+|.+..+.|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444455568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 121 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 121 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
.+|++..+++.+|.++..+|+ +++|+..|++++..+|+ ...++.+++.+....++...
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQ---SEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999 99999999999998885 89999999999998887554
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.60 E-value=4.4e-13 Score=101.48 Aligned_cols=176 Identities=16% Similarity=0.024 Sum_probs=149.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++..|+..|-.+++.+|++..+++..|.+|...|+-..|+.-+.+++++.|+...+....|.+++.+|.+++|+..|+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCH---HHHH------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158 83 KYLETFMADH---DAWR------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 147 (227)
Q Consensus 83 ~~l~~~p~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 147 (227)
.+++-+|++. ++.. .....++..|+...|+.+....+++.|=+...+...+.||...|+ ...
T Consensus 131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e---~k~ 207 (504)
T KOG0624|consen 131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE---PKK 207 (504)
T ss_pred HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc---HHH
Confidence 9999888652 2222 223345556889999999999999999888888889999999999 999
Q ss_pred HHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 148 AKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
|+..++.+-++..+ +...+|-+......+++...
T Consensus 208 AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 208 AIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHH
Confidence 99999999998885 77788888877777776443
No 76
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.60 E-value=8.7e-14 Score=110.17 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=109.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
+...|...+..|++++|+..|.++++.+|+++.+|..+|.++...|++++|+..+++++.++|.++.+++.+|.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158 141 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (227)
+ +++|+..|+++++++|+ +..+...+..|...+...
T Consensus 85 ~---~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 E---YQTAKAALEKGASLAPG-DSRFTKLIKECDEKIAEE 120 (356)
T ss_pred C---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhh
Confidence 9 99999999999999996 888888899998888653
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=2.5e-13 Score=113.40 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 104 (227)
..+...|+..+..|++++|..++.++++.+|.++.+|..+|.+|...|+.+++..++-.+-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 34556678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+|.+++|..||.+|++.+|.+....+..+.+|.++|+ ...|...|.+++.+.|.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~---~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD---LKRAMETFLQLLQLDPP 273 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh---HHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999 99999999999999994
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.8e-13 Score=102.54 Aligned_cols=157 Identities=16% Similarity=0.079 Sum_probs=143.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKAQGNFPT 76 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~ 76 (227)
..|-+|.|+.+|..+.+...--..++..+..+|....+|++|++..++..+..+.. +..+..++..+....+.+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 45789999999999988766677888999999999999999999999999998765 3567888998888999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 77 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 77 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|..+|+ ..+....+.++
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~---~~~~~~fL~~~ 275 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK---PAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 5688899999999999 99999999999
Q ss_pred hhhcCC
Q 027158 156 IDLTGG 161 (227)
Q Consensus 156 ~~~~~~ 161 (227)
.+..++
T Consensus 276 ~~~~~g 281 (389)
T COG2956 276 METNTG 281 (389)
T ss_pred HHccCC
Confidence 998886
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.8e-13 Score=106.21 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=106.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 027158 53 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 132 (227)
Q Consensus 53 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 132 (227)
.+|.-..-....|..++..|+|..|+..|.+++..+|+++.+|.+.|.||...|.+..|+..++.+++++|+....+.+-
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34444445556688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158 133 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 177 (227)
Q Consensus 133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (227)
|.++..+.+ |++|.+.|.++++.+|. +..+.-++..|...+
T Consensus 433 g~al~~mk~---ydkAleay~eale~dp~-~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 433 GAALRAMKE---YDKALEAYQEALELDPS-NAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHh
Confidence 999999999 99999999999999995 888888888888865
No 80
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=2.3e-13 Score=110.47 Aligned_cols=172 Identities=13% Similarity=0.043 Sum_probs=149.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|+...|..++.++.+.+|++..+|+....+.+...+++.|..++.++....| ...+|...+.....+++.++|+.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 36777888888888888888888888888888888888888888888887655 35778888888888999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
++++.+|+....|..+|+++..+++.+.|...|...++..|+.+..|..++.+-...|+ ...|...+.++.-.+|+
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999996
Q ss_pred chhHHHhHHHHHHHHHh
Q 027158 163 NTKALFGICLCSSAIAQ 179 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~ 179 (227)
+...|...+..-.+.+.
T Consensus 752 ~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGN 768 (913)
T ss_pred cchhHHHHHHHHHHcCC
Confidence 77777777766666554
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=1.7e-12 Score=111.87 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=130.1
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
++-...-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|..
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC
Confidence 33334456789999999999999999999999999999999999996554488999999999999999999999444445
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
......+|.++...|+|++|+..|+++++.+|+++.++..++.++...|+ .++|+..++++...+|.
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcc
Confidence 55566668899999999999999999999999999999999999999999 99999999999999995
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.55 E-value=6.9e-13 Score=105.51 Aligned_cols=175 Identities=15% Similarity=-0.004 Sum_probs=140.1
Q ss_pred CCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----hH
Q 027158 3 CQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----FP 75 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----~~ 75 (227)
.|+.+.+...+.++....|.+ .......+.++...|++++|...+++++..+|++..++.. +..+...|+ ..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~ 97 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRD 97 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCch
Confidence 466777788888888877744 4567788999999999999999999999999999987765 555555544 44
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
.+...+......+|........+|.++...|++++|+..+++++...|+++.++..+|.+++..|+ +++|+..+.++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~---~~eA~~~l~~~ 174 (355)
T cd05804 98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR---FKEGIAFMESW 174 (355)
T ss_pred hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHhh
Confidence 444444443355677777888999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhcCC---CchhHHHhHHHHHHHHHhhh
Q 027158 156 IDLTGG---KNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 156 ~~~~~~---~~~~~~~~l~~~~~~~~~~~ 181 (227)
+...|. .....++.++.++...++..
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 998763 11234556777777766544
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=5.4e-13 Score=105.02 Aligned_cols=137 Identities=19% Similarity=0.074 Sum_probs=124.3
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 21 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 21 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
|....+++-.+..++..|+++.|...++..+...|+++..+...+.+++..++.++|.+.+++++..+|+.+..+.++|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.++..|++.+|+..++..+..+|+++..|..||..|..+|+ ..+|...+.+...+.-
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGYALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999 7888877777777665
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=1.3e-12 Score=105.79 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=149.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
++++|...+...++++..+|++++.+.+.|..+...|+.++|......++..++.+...|..+|.++....+|++|+.+|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
+.|+.+.|+|...|..++.+..++++++.....-.+.++..|.....|..+|.+++..|+ +..|....+...+..
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999 999998888777665
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.6e-13 Score=107.71 Aligned_cols=146 Identities=20% Similarity=0.159 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 85 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 85 (227)
.++++...+...-.+|.-..--...|..++..|+|..|+.+|.+++..+|+++..|.+++.||...|.+..|+...+.++
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555666666667779999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 86 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
+++|+...+|..-|.++..+.+|++|++.|+++++.+|++..+.-.+..|...+.. .....+.+++
T Consensus 420 eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~---~~~~ee~~~r 485 (539)
T KOG0548|consen 420 ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG---DETPEETKRR 485 (539)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc---CCCHHHHHHh
Confidence 99999999999999999999999999999999999999999998888888886544 3334444444
No 86
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.1e-13 Score=103.63 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=143.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---------
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD--------- 93 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------- 93 (227)
...+..+.+.|+...|++++|...-...+++++.+.++++..|.++...++.+.|+..|++++.++|++..
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 34667788999999999999999999999999999999999999999999999999999999999998743
Q ss_pred ---HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 94 ---AWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 94 ---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
.|..-|+-.++.|.|..|.++|..+|.++|++. ..+.++|.+...+|+ .++|+...+.++.++|. .+.+
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yika 323 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKA 323 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHH
Confidence 577889999999999999999999999999764 468899999999999 99999999999999995 9999
Q ss_pred HHhHHHHHHHHHhhhc
Q 027158 167 LFGICLCSSAIAQLTK 182 (227)
Q Consensus 167 ~~~l~~~~~~~~~~~~ 182 (227)
+..-+.|+..+.++..
T Consensus 324 ll~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEE 339 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988664
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=9.2e-13 Score=112.87 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=141.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------------------HHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-------------------VLHK 62 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------------------~~~~ 62 (227)
+.+++++|+.+++..+..+|+...+++.+|.++.+.+++.++... .++...+.+. .+++
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR 120 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence 568999999999999999999999999999999998887776655 5555544444 8999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------------------C
Q 027158 63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------------------Q 122 (227)
Q Consensus 63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------~ 122 (227)
.+|.||-..|+.++|...++++++.+|+++.+..++|..|... +.++|+.++.+|+.. +
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999 999999999999854 2
Q ss_pred CCCHHH--------------------HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHH
Q 027158 123 PTVPLY--------------------HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 123 p~~~~~--------------------~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (227)
|.+... +.-+-.+|...++ |++++..++.+++.+|. +..+..+++.|+..
T Consensus 200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~ 269 (906)
T PRK14720 200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-NNKAREELIRFYKE 269 (906)
T ss_pred cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-chhhHHHHHHHHHH
Confidence 333221 1222255666667 99999999999999996 88999999999984
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=5.3e-13 Score=108.39 Aligned_cols=177 Identities=19% Similarity=0.143 Sum_probs=146.0
Q ss_pred CCCChHHHHHHHHHHHHhC-----CC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRV 65 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~ 65 (227)
+.+++++|+.+|++++... ++ ...++..+|..|...|++++|..++++++++. |.-...+..++
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 5689999999999999852 33 44668889999999999999999999999872 23346678889
Q ss_pred HHHHHcCChHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--------CCCHHHH
Q 027158 66 AIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--------PTVPLYH 129 (227)
Q Consensus 66 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~ 129 (227)
.++...+++++|+.++++++++. |.-+..+.++|.+|..+|+|++|.++|++++... +.....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 99999999999999999999863 2336689999999999999999999999999764 2335678
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhhc----CC--CchhHHHhHHHHHHHHHhhh
Q 027158 130 LAYADVLYTLGGVDNILLAKKYYASTIDLT----GG--KNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~ 181 (227)
.++|..+..+++ +.+|...|.++..+. |+ +-...+.+++-.|..++++.
T Consensus 413 ~~la~~~~~~k~---~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 413 NQLAEAYEELKK---YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHhcc---cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 999999999999 888888888887663 22 24567779999999999854
No 89
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=2.2e-12 Score=104.04 Aligned_cols=173 Identities=10% Similarity=-0.027 Sum_probs=93.3
Q ss_pred CCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
.|+++.|...+.++.+..|+.. ......+.++...|+++.|...++++.+..|+++.++..++.++...|++++|+..+
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4556666666666665555543 222233556666666666666666666666666666666666666666666665444
Q ss_pred HHHHH------------------------------------------HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 82 NKYLE------------------------------------------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 82 ~~~l~------------------------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
.+..+ ..|+++.++..++..+...|+.++|...+++++
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33321 122344455555555556666666666666665
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
+. |.++.....++.+ ..++ .++++...++.++..|+ ++..+..++..+...+++.+
T Consensus 291 ~~-~~~~~l~~l~~~l--~~~~---~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 291 KR-QYDERLVLLIPRL--KTNN---PEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred hc-CCCHHHHHHHhhc--cCCC---hHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 53 3333332223322 2244 66666666666666664 55555555555555555443
No 90
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.52 E-value=2.6e-12 Score=101.27 Aligned_cols=137 Identities=23% Similarity=0.204 Sum_probs=92.4
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|++++|+..++.++...|+++..+...+.++...++..+|.+.+++++..+|+.+..+..+|.++...|++.+|+..++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 45666666666666666677666666667777777777777777777777777666666677777777777777777777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
..+..+|+++..|..||..|..+|+-.+|.. ..|..++..|+ ++.|+..+..+.+..
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~---~~~A~~~l~~A~~~~ 455 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGR---LEQAIIFLMRASQQV 455 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCC---HHHHHHHHHHHHHhc
Confidence 7777777777777777777666666665532 34556666666 666666666666654
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=2.5e-11 Score=98.33 Aligned_cols=157 Identities=16% Similarity=0.063 Sum_probs=124.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
..|+++.|.+.+.+..+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 357888888888888887777777777778888888888888888888888888775 4555568888888888888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------------------------------------C
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------------------------------------Q 122 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------------------------~ 122 (227)
++.+++..|+++.++..++.++...|+|++|...+.+..+. .
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 88888888888888888888888888888777766655533 2
Q ss_pred C----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 123 P----TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 123 p----~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
| +++..+..+|..+...|+ +++|...++++++..|+
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~---~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDD---HDSAQEIIFDGLKKLGD 295 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCC
Confidence 3 355567777777888888 99999999999998886
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.50 E-value=1.9e-12 Score=86.57 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELA 99 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la 99 (227)
.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555555555555555555555544 3455555555555555555555555555555543 34555555
Q ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 100 EIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
.++...|++++|+.++++++...|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555543
No 93
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.50 E-value=1.3e-11 Score=92.56 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH---KRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 96 (227)
++..++..|......|++++|+..|++++..+|..+.+. ..+|.++...+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344455566666666666666666666666666554332 556666666666666666666666666655 33555
Q ss_pred HHHHHHHHcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCC
Q 027158 97 ELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGG 141 (227)
Q Consensus 97 ~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~ 141 (227)
.+|.++...+ ...+|+..|++.+...|++.. --+.+|..|++.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5555543322 123455666666666665532 12455666666666
Q ss_pred CCcHHHHHHHHHHHhhhcCC--CchhHHHhHHHHHHHHHh
Q 027158 142 VDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 179 (227)
+..|+.-++.+++.-|+ ....+++-+..++..++.
T Consensus 191 ---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 191 ---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred ---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 66666666666666554 334555555555555443
No 94
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.48 E-value=9.3e-12 Score=91.16 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 96 (227)
++..++..|...+..|+|.+|+..|++++...|.+ +.+.+.+|.++...|+++.|+..+++.++.+|.+ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888899999999999999999999888776 3778888999999999999999999999998887 45788
Q ss_pred HHHHHHHHc-----------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHH
Q 027158 97 ELAEIYVSL-----------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLA 148 (227)
Q Consensus 97 ~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A 148 (227)
.+|.+++.. +...+|+..|+..+...|+++. --+.+|..|++.|. +..|
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~aA 160 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHHH
Confidence 888876654 3346889999999999888743 23556788888888 9999
Q ss_pred HHHHHHHhhhcCC--CchhHHHhHHHHHHHHHh
Q 027158 149 KKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 149 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 179 (227)
+..++.+++.-|+ ....++..++.++..++.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999998887 234556666666666664
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=9.3e-13 Score=108.49 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 103 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 103 (227)
...|...+..+...+..++|..++.++-..+|..+..|+..|.++...|.+.+|.+.|..++.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 104 SLQMYKQAAF--CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 104 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
..|+..-|.. ++..+++++|.++.+|+.+|.++...|+ .+.|.++|..++++.+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEES 786 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccC
Confidence 9999888888 9999999999999999999999999999 99999999999999875
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.4e-12 Score=98.18 Aligned_cols=171 Identities=14% Similarity=0.064 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
.-+..++-......|++...+..+|.+++..|++++|+..|+++...+|.+....-..|.++...|+++.-.......+.
T Consensus 215 a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 215 ASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred hhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence 34556666777788999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
.+.....-|+--+.+.+...+++.|+.+-+++++.+|.+..++...|..+..+|+ .++|+-.|+.+..+.|- ..+.
T Consensus 295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~~A~IaFR~Aq~Lap~-rL~~ 370 (564)
T KOG1174|consen 295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HTQAVIAFRTAQMLAPY-RLEI 370 (564)
T ss_pred hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hHHHHHHHHHHHhcchh-hHHH
Confidence 8888888999999999999999999999999999999999999999999999999 99999999999999994 8999
Q ss_pred HHhHHHHHHHHHhhh
Q 027158 167 LFGICLCSSAIAQLT 181 (227)
Q Consensus 167 ~~~l~~~~~~~~~~~ 181 (227)
+.|+.-||...+.+.
T Consensus 371 Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFK 385 (564)
T ss_pred HHHHHHHHHhhchHH
Confidence 999999998876643
No 97
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.47 E-value=9.1e-12 Score=91.22 Aligned_cols=144 Identities=20% Similarity=0.174 Sum_probs=116.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC---
Q 027158 2 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQG--- 72 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~--- 72 (227)
+.|+|.+|+..|+.+...+|.+ +.+.+.+|.++...|+++.|+..+++.++.+|+++ .+++.+|.++....
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 5799999999999999999965 46789999999999999999999999999999875 67888888766543
Q ss_pred --------ChHHHHHHHHHHHHHcCCCHHH-----------------HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 027158 73 --------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAFCYEELILSQPTVP- 126 (227)
Q Consensus 73 --------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~- 126 (227)
...+|+..|+..+...|++..+ -+.+|..|.+.|.|..|+..++.+++..|+.+
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 3458999999999999998321 23679999999999999999999999999885
Q ss_pred --HHHHHHHHHHHHcCCCCcHHHH
Q 027158 127 --LYHLAYADVLYTLGGVDNILLA 148 (227)
Q Consensus 127 --~~~~~la~~~~~~g~~~~~~~A 148 (227)
.++..++.++..+|. ...|
T Consensus 177 ~~~al~~l~~~y~~l~~---~~~a 197 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGL---KQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHHHHHHHHhCC---hHHH
Confidence 578999999999998 6633
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.47 E-value=1.8e-12 Score=82.46 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++.++...|.++.++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHhhhcC
Q 027158 141 GVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~ 160 (227)
+ ++.|...+.++++..|
T Consensus 83 ~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 K---YEEALEAYEKALELDP 99 (100)
T ss_pred h---HHHHHHHHHHHHccCC
Confidence 5 5555555555555544
No 99
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.3e-12 Score=94.48 Aligned_cols=123 Identities=15% Similarity=0.018 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Q 027158 39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCY 115 (227)
Q Consensus 39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~ 115 (227)
+.+.-+.-++.-+..+|+++..|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+. .-.++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35566777888888999999999999999999999999999999999999999999999999987763 467899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158 116 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 164 (227)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~ 164 (227)
++++..+|++..+.+.||..++..|+ +.+|...++..++..|...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999 99999999999999986343
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.6e-12 Score=93.35 Aligned_cols=123 Identities=20% Similarity=0.041 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWL 81 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~ 81 (227)
..+.-+.-++.-+..+|++..-|.++|.+|+..|+++.|...|.+++++.|++++++..+|.++..+. ...++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777888899999999999999999999999999999999999999999999999999776643 466899999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
++++..+|.+..+.+.||..++..|+|.+|+..++..+...|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999886644
No 101
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.47 E-value=2.1e-12 Score=82.13 Aligned_cols=99 Identities=25% Similarity=0.214 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 105 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 105 (227)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCC
Q 027158 106 QMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 106 ~~~~~A~~~~~~al~~~p~ 124 (227)
|+++.|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=1.7e-11 Score=99.56 Aligned_cols=169 Identities=19% Similarity=0.163 Sum_probs=149.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+|+-++|..+.+..+..++.+...|..+|.++....+|++|+.+|+.|+...|++..+|..++.+..+.|+++.....-.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---CCCHH--------------------------------
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL-------------------------------- 127 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~-------------------------------- 127 (227)
+.++..|..-..|...+..+.-.|++..|....+...+.. |....
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 9999999999999999999999999999998888777554 22111
Q ss_pred -------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158 128 -------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 175 (227)
Q Consensus 128 -------~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (227)
.....|.++..+|+ +++|...|...+..+|+ +...+.++..+..
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERNPD-NLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCch-hHHHHHHHHHHHH
Confidence 33445666677777 99999999999999996 7777777766664
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.46 E-value=6.6e-12 Score=83.88 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA 131 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 131 (227)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+.+|+.++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999887 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158 132 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 164 (227)
Q Consensus 132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~ 164 (227)
+|.++...|+ +++|...+.++++..|+ +.
T Consensus 82 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~ 110 (119)
T TIGR02795 82 LGMSLQELGD---KEKAKATLQQVIKRYPG-SS 110 (119)
T ss_pred HHHHHHHhCC---hHHHHHHHHHHHHHCcC-Ch
Confidence 9999999999 99999999999999996 44
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=3.5e-12 Score=105.15 Aligned_cols=125 Identities=28% Similarity=0.320 Sum_probs=118.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH--H
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE--W 80 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~ 80 (227)
.+..++|..++.++...+|-.+.++++.|.++...|++.+|.+.|..++..+|+++.+...+|.++...|+..-|.. .
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~ 742 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL 742 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999888888 9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
+..+++++|.++++|+.+|.++...|+.++|.+||+.++++.+.+|.
T Consensus 743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999988764
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.46 E-value=7e-12 Score=105.98 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=138.9
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 84 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 84 (227)
+...|...|-+++.++|....++..+|.+|...-+...|..+|+++++++|++..++...+..|....+++.|....-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999888888888888888888886666
Q ss_pred HHHcCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 85 LETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 85 l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
-+..|.. ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|. +..|++.|.++..++|.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL- 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH-
Confidence 6666543 34677788888888888888888888888888888888888888888888 88888888888888885
Q ss_pred chhHHHhHHHHHHHHHh
Q 027158 163 NTKALFGICLCSSAIAQ 179 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~ 179 (227)
...+.+-.+...-.++.
T Consensus 629 s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 54444444444444443
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.46 E-value=7.1e-13 Score=79.90 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCC
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP 123 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 123 (227)
.+|..+|.++...|++++|+..|.++++.+|+++.+|+++|.++...| ++++|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444444444444443
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.45 E-value=7.5e-13 Score=79.79 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhhhcC
Q 027158 90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~~~~~~~ 160 (227)
+++..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| + +.+|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 8 9999999999999988
No 108
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.45 E-value=1e-11 Score=88.68 Aligned_cols=117 Identities=21% Similarity=0.172 Sum_probs=79.8
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 98 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 98 (227)
.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.++..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344566777777777788888888888777765543 35677777777777777777777777777777777777777
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 99 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 99 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
|.++...|+...+...++.++ .. +.+|...+++++..+|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~--------------------~~---~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE--------------------AL---FDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH--------------------HH---HHHHHHHHHHHHhhCch
Confidence 777777776544443333322 12 56666666666666664
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.44 E-value=9.3e-12 Score=88.57 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHH
Q 027158 40 WAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 40 ~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
+..+...+...++..+.+ ..++..+|.++...|++++|+..|++++.+.|+. +.+|.++|.++...|++++|+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444444 4556777777777777777777777777766553 34677777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHH-------HcCCCCcHH-------HHHHHHHHHhhhcCC
Q 027158 115 YEELILSQPTVPLYHLAYADVLY-------TLGGVDNIL-------LAKKYYASTIDLTGG 161 (227)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~~~-------~A~~~~~~~~~~~~~ 161 (227)
+++++.++|.....+..+|.++. ..|+ ++ +|...|++++..+|+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGD---SEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc---HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 77777777777777777777777 4445 44 556666667777774
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.44 E-value=6.7e-12 Score=87.05 Aligned_cols=118 Identities=23% Similarity=0.182 Sum_probs=101.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccH
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMY 108 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~ 108 (227)
...+++..+...++..+..+|++ ..+...+|.++...|++++|...|+.++...|+. +.+...+|.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 35788888988999999999988 4667788999999999999999999999987665 45788999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 109 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
++|+..++. +...+..+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 999999966 34445567788999999999999 999999999875
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.43 E-value=1.3e-11 Score=87.89 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
|..+...+...+...+.. ...++.+|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455566666665555543 5677899999999999999999999999887653 46899999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH-------HcccHH-------HHHHHHHHHHhhCCCCH
Q 027158 81 LNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP 126 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 126 (227)
+++++.++|.....+..+|.++. ..|+++ +|+.+|++++..+|.+.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999998 777766 56666667777777654
No 112
>PRK11906 transcriptional regulator; Provisional
Probab=99.43 E-value=3e-11 Score=95.71 Aligned_cols=151 Identities=10% Similarity=-0.049 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 027158 6 LDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 73 (227)
Q Consensus 6 ~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 73 (227)
.+.|+.+|.+++ ..+|+...++-.++.|++.. .+..+|..+..++++++|.|+.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467888999999 88888899999998888765 345678888899999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHcCCCCcHHHHHHHH
Q 027158 74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY-HLAYADVLYTLGGVDNILLAKKYY 152 (227)
Q Consensus 74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~~~~A~~~~ 152 (227)
++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|.-..+ ...+..-.+.-.. .++|+..|
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP---LKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc---hhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999976544 2333331333344 78888877
Q ss_pred HHHhhhc
Q 027158 153 ASTIDLT 159 (227)
Q Consensus 153 ~~~~~~~ 159 (227)
-+-.+..
T Consensus 431 ~~~~~~~ 437 (458)
T PRK11906 431 YKETESE 437 (458)
T ss_pred hhccccc
Confidence 6554443
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.42 E-value=3.3e-11 Score=83.55 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=101.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFP 75 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~ 75 (227)
+.++...+...++.++..+|++ ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4578888888999999999988 5667889999999999999999999999987665 357888999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
+|+..++. +.-.+..+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999976 33444557788999999999999999999999874
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.42 E-value=9.7e-11 Score=87.88 Aligned_cols=149 Identities=15% Similarity=0.033 Sum_probs=126.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC---
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQG--- 72 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~--- 72 (227)
..|++++|+..|++++..+|.++.+. +.+|.++...+++++|+..+++.++.+|+++ .+++.+|.++...+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 46899999999999999999876554 8899999999999999999999999988774 77888998875554
Q ss_pred ------------C---hHHHHHHHHHHHHHcCCCHH---H--------------HHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 73 ------------N---FPTAIEWLNKYLETFMADHD---A--------------WRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 73 ------------~---~~~A~~~~~~~l~~~p~~~~---~--------------~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
+ ..+|+..|++.++..|++.. + -...|..|.+.|.|..|+.-++.++.
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 1 35788999999999999843 1 23668889999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 121 SQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 121 ~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
..|+. +.++..++.+|..+|. .++|.....
T Consensus 204 ~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~ 236 (243)
T PRK10866 204 DYPDTQATRDALPLMENAYRQLQL---NAQADKVAK 236 (243)
T ss_pred HCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHH
Confidence 98876 5689999999999999 888876654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=100.67 Aligned_cols=155 Identities=19% Similarity=0.112 Sum_probs=129.6
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHhcC
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGIL----------------------------LEAKGLWAEAEKAYSSLLEDN 54 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~----------------------------~~~~~~~~~A~~~~~~~l~~~ 54 (227)
.|+-.+|..+..+.++ .|+++..|..+|++ ....++|+++..+++..++++
T Consensus 437 lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 437 LGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred hcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 3555667777777766 44455555555542 233478999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 55 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 55 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
|-....|+.+|.+..+.+++..|...|..++.++|++..+|.+++..|...++-.+|...+.+|++.+-+++..|-+...
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999988
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+....|. +++|+..|.+.+++...
T Consensus 596 vsvdvge---~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 596 VSVDVGE---FEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhccc---HHHHHHHHHHHHHhhhh
Confidence 9999999 99999999998887543
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=6e-11 Score=101.97 Aligned_cols=135 Identities=15% Similarity=0.012 Sum_probs=123.3
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH-------
Q 027158 20 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------- 92 (227)
Q Consensus 20 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~------- 92 (227)
.|.+..++..+...+...+++++|+..+..+++.+|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4688899999999999999999999999999999999999999999999998887776665 6666666555
Q ss_pred ------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 93 ------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 93 ------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.+++.+|.||-.+|++++|...|+++++.+|+++.++.++|..|... + +++|..++.+++...-
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~~i 180 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 8 9999999999998743
No 117
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.41 E-value=5.5e-11 Score=98.11 Aligned_cols=139 Identities=13% Similarity=0.049 Sum_probs=115.8
Q ss_pred hCCCchhh--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 027158 19 QFPESKRV--GRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--------NFPTAIEWLNKYL 85 (227)
Q Consensus 19 ~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~l 85 (227)
..|.++.+ +++.|..+...++ ...|+.+|+++++.+|++..++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555555 4567777766654 779999999999999999999998888775542 2345555666655
Q ss_pred HH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 86 ET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 86 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.+ +|.++.++..+|..+...|++++|...+++|+.++| +..++..+|.++...|+ .++|...|.+++.++|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence 53 777889999999999999999999999999999999 58899999999999999 99999999999999996
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=5.3e-12 Score=106.70 Aligned_cols=171 Identities=16% Similarity=0.064 Sum_probs=157.0
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChHHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+...|..+|+++.+.+|.+..+.-..+..|....+++.|....-++-+..|-.. ..|..+|..|...++...|+..|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 456799999999999999999999999999999999999999777766666443 556779999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
.++..+|.+.+.|..+|.+|...|.|..|+..|.++..++|.+....+..|.+...+|+ +.+|+..+...+.....
T Consensus 587 sALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk---Ykeald~l~~ii~~~s~- 662 (1238)
T KOG1127|consen 587 SALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK---YKEALDALGLIIYAFSL- 662 (1238)
T ss_pred HHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999998885
Q ss_pred chhHHHhHHHHHHHHHh
Q 027158 163 NTKALFGICLCSSAIAQ 179 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~ 179 (227)
...++.|++.++.+...
T Consensus 663 e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAK 679 (1238)
T ss_pred HHHhhhhHHHHHHHHHH
Confidence 88888899999888765
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.38 E-value=3.2e-12 Score=80.11 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=54.8
Q ss_pred cCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158 71 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 148 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 148 (227)
+|+++.|+..++++++..|. +...++.+|.+++..|+|++|+.++++ ...+|.++..++.+|.++..+|+ +++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 46677777777777777774 345566677777777777777777777 66666666666677777777777 7777
Q ss_pred HHHHHHH
Q 027158 149 KKYYAST 155 (227)
Q Consensus 149 ~~~~~~~ 155 (227)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 7776653
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.38 E-value=2.8e-11 Score=86.40 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158 54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130 (227)
Q Consensus 54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 130 (227)
.+....+++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+.++++++...|.++..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34556788999999999999999999999999987764 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 131 AYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 131 ~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
.+|.++...|+ ...+...+..++
T Consensus 111 ~lg~~~~~~g~---~~~a~~~~~~A~ 133 (172)
T PRK02603 111 NIAVIYHKRGE---KAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHHHcCC---hHhHhhCHHHHH
Confidence 99999999887 544444444333
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.37 E-value=2.6e-11 Score=100.03 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=108.5
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------GLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGN 73 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~ 73 (227)
+....|+.+|+++++.+|++..++..++.++... ++...+.....+++.. +|.++.++..+|......|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 4578999999999999999999999888877554 2345666667776664 77788999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
+++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999999999 58899999999999999999999999999999998753
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.2e-11 Score=92.80 Aligned_cols=131 Identities=19% Similarity=0.139 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
....|+.++..|+|..|...|++++..-. .+ ..++.+++.|+..++++..|+..++++|.++|.|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 45678899999999999999999887522 11 3567888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhhcC
Q 027158 92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAKKYYASTIDLTG 160 (227)
Q Consensus 92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~-~A~~~~~~~~~~~~ 160 (227)
..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+..+... +. ...+.|..++...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999998888888887776665 44 44677887777654
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.36 E-value=3.4e-12 Score=80.03 Aligned_cols=81 Identities=28% Similarity=0.317 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 37 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 37 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
+|+++.|+.+++++++..|. +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.++...|+|++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344555667777777777777777777 666666666666777777777777777777
Q ss_pred HHHH
Q 027158 115 YEEL 118 (227)
Q Consensus 115 ~~~a 118 (227)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=2.8e-10 Score=93.57 Aligned_cols=157 Identities=20% Similarity=0.132 Sum_probs=128.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----ChHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-----NFPT 76 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~ 76 (227)
+.|++++|+..+.......++...+....|.++...|++++|...|...+..+|++...+..+..+..... ..+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 46899999999999988889999999999999999999999999999999999999888877777662221 2222
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 027158 77 AIEWLNKYLET--------------------------------------------------------------------- 87 (227)
Q Consensus 77 A~~~~~~~l~~--------------------------------------------------------------------- 87 (227)
-..+|.+....
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 33333331000
Q ss_pred ------------cCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 88 ------------FMADH--DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 88 ------------~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
.|... .+++.+|..|...|++++|+.+.++++...|+.+..+...|.++-..|+ +.+|...+.
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~ 252 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMD 252 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHH
Confidence 01111 2457889999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCC
Q 027158 154 STIDLTGG 161 (227)
Q Consensus 154 ~~~~~~~~ 161 (227)
.+..+++.
T Consensus 253 ~Ar~LD~~ 260 (517)
T PF12569_consen 253 EARELDLA 260 (517)
T ss_pred HHHhCChh
Confidence 99999884
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.35 E-value=4.1e-12 Score=75.59 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
.+...|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+.+|++++..+|
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 333333333333333333333333333333333333333333333333333333333
No 126
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.35 E-value=1.1e-10 Score=88.23 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 027158 59 VLHKRRVAIA-KAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA 131 (227)
Q Consensus 59 ~~~~~l~~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 131 (227)
..++..+..+ ...|++++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444433 34456666666666666666655 3566666666666666666666666666555543 445555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 132 YADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+|.++..+|+ +++|...|+++++..|+
T Consensus 223 lg~~~~~~g~---~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGD---TAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence 6666666666 66666666666666554
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.33 E-value=1.2e-11 Score=73.51 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158 28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 92 (227)
Q Consensus 28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 92 (227)
+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999875
No 128
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=6.9e-11 Score=81.37 Aligned_cols=102 Identities=9% Similarity=-0.115 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158 54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133 (227)
Q Consensus 54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 133 (227)
.++.-...+..|.-++..|++++|..+|+-..-.+|.+++.|..||-++...++|++|+.+|-.+..+++++|...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44455677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 134 DVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 134 ~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.|+..+|+ ...|...|..++..
T Consensus 113 qC~l~l~~---~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMRK---AAKARQCFELVNER 134 (165)
T ss_pred HHHHHhCC---HHHHHHHHHHHHhC
Confidence 99999999 99999999999884
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=3.4e-11 Score=92.52 Aligned_cols=149 Identities=17% Similarity=0.086 Sum_probs=104.3
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 102 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 102 (227)
++.+....|.++...|++++|+..+.+. .+.++......++...++++.|.+.++.+-+.+.++.-.....+.+.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4455566677777778888887766543 45666667777888888888888888887776665555555555555
Q ss_pred HHcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158 103 VSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180 (227)
Q Consensus 103 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (227)
+..| .+.+|...|++.....|.++..+..+|.++..+|+ +++|...+.+++..+|. ++..+.+++.|...+++.
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence 5555 47888888888777767777788888888888888 88888888888888885 777888888777776664
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=99.31 E-value=3.4e-10 Score=89.87 Aligned_cols=131 Identities=13% Similarity=-0.033 Sum_probs=118.9
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHcCCCH
Q 027158 28 RLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADH 92 (227)
Q Consensus 28 ~~~a~~~~~~~---~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~l~~~p~~~ 92 (227)
++.|......+ ..+.|..+|.+++ ..+|+...++..++.|++.. ....+|...-+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 66777666554 4567899999999 89999999999999988764 245688999999999999999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.++..+|.+....++++.|...|++|+.++|+...+++..|.+....|+ .++|...++++++++|.
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999999999 99999999999999995
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.31 E-value=1.3e-10 Score=92.15 Aligned_cols=120 Identities=19% Similarity=0.074 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 110 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~ 110 (227)
-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+++++..+|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34555567888888888888877765 445577777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 111 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
|+.+.++++...|.+...|..||.+|...|+ ++.|+..++.+=
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence 8888888888888888888888888888888 888887776443
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=6.1e-11 Score=97.55 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=136.3
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI--------------- 67 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--------------- 67 (227)
.|-...|+.+++++ ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+
T Consensus 411 lGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn 481 (777)
T KOG1128|consen 411 LGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSN 481 (777)
T ss_pred cchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhh
Confidence 45555666666655 3455567888999999999998888888 55555555544432
Q ss_pred -------------HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 68 -------------AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 68 -------------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
..+.+++.++..+++..++++|-....|+.+|.++.+.+++..|..+|...+..+|++..+|.+++.
T Consensus 482 ~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 482 YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhH
Confidence 2335789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
+|...|+ -.+|...+.++++-+-. +...|.+..++...++.++
T Consensus 562 ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 562 AYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHHHHhh---hHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHH
Confidence 9999999 99999999999999864 7777777777766666544
No 133
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.30 E-value=1.3e-09 Score=96.70 Aligned_cols=170 Identities=18% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIE 79 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~ 79 (227)
.|++++|..+|+.+...+ +.+...+..+...|.+.|++++|..+|.++... .| +...|..+...+...|++++|..
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHH
Confidence 345555555555555544 234445555555555555555555555555544 22 24455555555555666666666
Q ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 80 WLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 80 ~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
.++.+.+.. +.+...|..+...|.+.|++++|..+|++..... ..+...|..+...|.+.|+ +++|...|.+...
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~---~eeAlelf~eM~~ 747 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ---LPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 665555443 2345556666666666666666666666654321 1234556666666666666 6666666666554
Q ss_pred hcCCCchhHHHhHHHHHHH
Q 027158 158 LTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~ 176 (227)
..-.++...+..+..++.+
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 748 LGLCPNTITYSILLVASER 766 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 3221233444444444433
No 134
>PRK15331 chaperone protein SicA; Provisional
Probab=99.30 E-value=1e-10 Score=80.50 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=96.1
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
+.....+..|.-++..|++++|..+|+-..-.+|.++..|..+|.|+...+++++|+..|-.+..+++++|...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34456778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccHHHHHHHHHHHHhhCCCCH
Q 027158 102 YVSLQMYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 102 ~~~~~~~~~A~~~~~~al~~~p~~~ 126 (227)
++..|+.+.|..+|+.++. .|.+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999998 45533
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.28 E-value=2.6e-10 Score=86.27 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=94.5
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHH
Q 027158 25 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE 97 (227)
Q Consensus 25 ~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~ 97 (227)
...+..+..+ ...|+|++|+..|+..++.+|++ +.+++.+|.+++..|++++|+..|++++..+|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5566677765 56799999999999999999998 5799999999999999999999999999998885 789999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
+|.++...|++++|...|++++...|++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999998754
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.28 E-value=4.1e-10 Score=89.41 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+++++.|+.+++++...+|+ +...++.++...++..+|+..+++++...|.+...+...+..+...++++.|+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 47899999999999988875 667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
+++.+.|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999998776543
No 137
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.28 E-value=2.2e-09 Score=95.38 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHH
Q 027158 4 QCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
|++++|..++..+... .| +...+..+...|...|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 4555555555555432 12 23344445555555566666666666555543 334455566666666666666666
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 79 EWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 79 ~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
..|.+..+.. ..+...|..+...|...|++++|..+++.+.+.. +.+...+..+...|.+.|+ +++|...|++..
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~---~eeA~~lf~eM~ 711 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN---WKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 6666655441 1134556666666666666666666666666543 2345566666667777777 777777777665
Q ss_pred hhcCCCchhHHHhHHHHHHHHHh
Q 027158 157 DLTGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~ 179 (227)
+....++...|..++..+.+.++
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCC
Confidence 43222245555555555554443
No 138
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.27 E-value=5.4e-10 Score=74.07 Aligned_cols=97 Identities=19% Similarity=0.056 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC---CHHHHHH
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWRE 97 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~ 97 (227)
+.+++..|.++...|+.++|+.+|++++...++. ..++..+|..+...|++++|+..+++.+..+|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3567788888888888888888888888865444 467778888888888888888888888888887 6777788
Q ss_pred HHHHHHHcccHHHHHHHHHHHHh
Q 027158 98 LAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~ 120 (227)
++.++...|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888776663
No 139
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.3e-10 Score=87.95 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
.....|..+++.|+|..|...|++++..-+.. ..++.+++.++.+++.|..|+..+.+++.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34577899999999999999999998764422 237889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
|..++++.|.++..+|+ ++.|+..|++++++.|+ +-.+...++.|..++....
T Consensus 290 N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGE---YDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYE 342 (397)
T ss_pred chhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999996 8778888888888877633
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=6e-09 Score=85.85 Aligned_cols=118 Identities=15% Similarity=-0.033 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 138 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 138 (227)
.+++.++..|...|++++|+.+++++|+..|..++.+...|.++-+.|++.+|..+++.|..+++.+-......+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHhhhc--CCCc------hhHHHhHHHHHHHHHh
Q 027158 139 LGGVDNILLAKKYYASTIDLT--GGKN------TKALFGICLCSSAIAQ 179 (227)
Q Consensus 139 ~g~~~~~~~A~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~ 179 (227)
.|+ +++|...+......+ |..+ .+.....+.++.+.++
T Consensus 275 a~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 275 AGR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999 999999887776654 2111 2333345555665554
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=1.1e-10 Score=89.67 Aligned_cols=151 Identities=16% Similarity=0.067 Sum_probs=121.9
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--NFPTAIEW 80 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~ 80 (227)
.|++++|+..+.+. .+.+.......++...++++.|.+.++.+-+.+.+........+.+.+..| .+.+|...
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46666666655432 567778888899999999999999999998888776665555555666655 69999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhhc
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI-LLAKKYYASTIDLT 159 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~-~~A~~~~~~~~~~~ 159 (227)
|+...+.+|.++..+..++.+++.+|+|++|...+++++..+|+++.++.+++.+....|+ . +.+.+++.+....+
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhC
Confidence 9999888889999999999999999999999999999999999999999999999999998 6 55667777777788
Q ss_pred CC
Q 027158 160 GG 161 (227)
Q Consensus 160 ~~ 161 (227)
|.
T Consensus 267 p~ 268 (290)
T PF04733_consen 267 PN 268 (290)
T ss_dssp TT
T ss_pred CC
Confidence 85
No 142
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.21 E-value=7.1e-11 Score=70.83 Aligned_cols=64 Identities=31% Similarity=0.411 Sum_probs=36.9
Q ss_pred HcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158 70 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133 (227)
Q Consensus 70 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 133 (227)
..|++++|+..|++++..+|+++.++..+|.+++..|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4555566666666666666666666666666666666666666666666665555555554444
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=4.6e-10 Score=80.23 Aligned_cols=154 Identities=17% Similarity=0.105 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.|-.+.|..-|.+++...|+-+.++..+|..+...|+++.|.+.|+..++++|....+..++|..+.--|++.-|...+.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 35566677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCHH--HHH--------------HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCC-------
Q 027158 83 KYLETFMADHD--AWR--------------ELAEIYVSL--------------QMYKQAAFCYEELILSQPTV------- 125 (227)
Q Consensus 83 ~~l~~~p~~~~--~~~--------------~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~------- 125 (227)
+.-+.+|++|- .|. ++..-+... |+.. -...++++.....++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~L 236 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHL 236 (297)
T ss_pred HHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHH
Confidence 88888888753 332 222222211 1111 012223333222222
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 126 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 126 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
..+++.+|..+...|+ ..+|...|+-++.-+-
T Consensus 237 TEtyFYL~K~~l~~G~---~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGD---LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhH
Confidence 2367788888888888 9999999988887654
No 144
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.19 E-value=1.4e-09 Score=93.99 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
.|++++|..+|+.+. +.+...|..+...|...|++++|..+|+++.... .-+...+..+...+...|++++|.+.+
T Consensus 272 ~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 272 CGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 466667776666542 2355566666777777777777777777665542 223455666666666666666666666
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 82 NKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 82 ~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
..+++.. +.+...+..+...|.+.|++++|...|++... .+...|..+...|...|+ .++|+..|++..+...
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~---~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR---GTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 6666654 34455666666666666666666666665532 234556666666666666 6666666666655432
Q ss_pred CCchhHHHhHHHHHH
Q 027158 161 GKNTKALFGICLCSS 175 (227)
Q Consensus 161 ~~~~~~~~~l~~~~~ 175 (227)
.++...+..+..++.
T Consensus 423 ~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 423 APNHVTFLAVLSACR 437 (697)
T ss_pred CCCHHHHHHHHHHHh
Confidence 223444444444333
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=2.9e-09 Score=82.09 Aligned_cols=150 Identities=20% Similarity=0.178 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HD 93 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~ 93 (227)
.+..-|.+|...|+|++|...|.++....- ++ ...+...+.++... ++++|+.++++++.+.-.. +.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345568888999999999999999977531 11 35566666676666 9999999999999874322 55
Q ss_pred HHHHHHHHHHHc-ccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-----
Q 027158 94 AWRELAEIYVSL-QMYKQAAFCYEELILSQP--TV----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG----- 161 (227)
Q Consensus 94 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~----- 161 (227)
.+..+|.+|... |++++|+.+|++|+.... +. ...+..+|.++...|+ |++|+..|+++....-+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~---y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR---YEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhhcccccc
Confidence 788999999999 999999999999997642 12 3468899999999999 99999999999875322
Q ss_pred Cch-hHHHhHHHHHHHHHh
Q 027158 162 KNT-KALFGICLCSSAIAQ 179 (227)
Q Consensus 162 ~~~-~~~~~l~~~~~~~~~ 179 (227)
... ..++..++|+...++
T Consensus 193 ~~~~~~~l~a~l~~L~~~D 211 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGD 211 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHcCC
Confidence 122 234566777777654
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.16 E-value=1.7e-10 Score=69.15 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
+..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 455677777777777777777777777777777777777777777777777777776666555543
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.15 E-value=7.4e-09 Score=79.79 Aligned_cols=155 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKA 70 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~ 70 (227)
.|++++|...|.++....- .-...+...+.++... ++++|+.+|++++...- +. ..++..+|.+|..
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3677788888887766532 1223445555665554 99999999999998732 22 4678899999999
Q ss_pred c-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHH
Q 027158 71 Q-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----P---LYHLAYADVL 136 (227)
Q Consensus 71 ~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~la~~~ 136 (227)
. |++++|+++|++++++.... ...+..+|.++...|+|++|+..|+++....-++ . ..++..+.|+
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 8 99999999999999985432 4467899999999999999999999998754221 1 3566778899
Q ss_pred HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 137 YTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 137 ~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
...|+ ...|...+.+....+|.
T Consensus 207 L~~~D---~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 207 LAMGD---YVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT----HHHHHHHHHHHGTTSTT
T ss_pred HHcCC---HHHHHHHHHHHHhhCCC
Confidence 99999 99999999999999986
No 148
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.15 E-value=4.8e-10 Score=68.18 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158 66 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 130 (227)
Q Consensus 66 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 130 (227)
.++...+++++|+.++++++.++|+++..|..+|.++...|++.+|+..++++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555544433
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.14 E-value=3.1e-09 Score=70.48 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY 132 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 132 (227)
.+++.++.++-..|+.++|+.+|++++...+.. ..+++.+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999976554 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 133 ADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 133 a~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
+.+++..|+ .++|+..+..++.-
T Consensus 82 Al~L~~~gr---~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYNLGR---PKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHH
Confidence 999999999 99999999887763
No 150
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.14 E-value=5.1e-09 Score=90.61 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=97.4
Q ss_pred CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
.|++++|+.+|+++.... ..+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 577788888888776643 2244566666677777777777777777777664 44556666777777777777777777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
|++..+ .+...|..+...|...|+.++|+.+|++..... ..+..++..+...+...|. .++|...|+...+
T Consensus 383 f~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~---~~~a~~~f~~m~~ 454 (697)
T PLN03081 383 FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL---SEQGWEIFQSMSE 454 (697)
T ss_pred HHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc---HHHHHHHHHHHHH
Confidence 776542 245567777777777777777777777766432 1234445555566666666 6666666666654
No 151
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=4.3e-08 Score=77.80 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=139.7
Q ss_pred CCCChHHHHHHHHHHHHhCCC----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPE----SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 77 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 77 (227)
+..+.+.+..+|+..++..|. ...+|.+.|....++.+...|.+.+-.++-..|.+- ++.....+-..+++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHH
Confidence 456788999999999999994 568899999999999999999999999999999854 455777888899999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY--HLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
..+|++.++..|.+..+|...|.+-...|+.+.|...|+-|+....-+..- |-.+-..-...|. ++.|...|++.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerl 533 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERL 533 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877655443 4444445566777 99999999999
Q ss_pred hhhcCCCchhHHHhHH
Q 027158 156 IDLTGGKNTKALFGIC 171 (227)
Q Consensus 156 ~~~~~~~~~~~~~~l~ 171 (227)
++..+ ....|...+
T Consensus 534 L~rt~--h~kvWisFA 547 (677)
T KOG1915|consen 534 LDRTQ--HVKVWISFA 547 (677)
T ss_pred HHhcc--cchHHHhHH
Confidence 99988 333554443
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.6e-09 Score=84.45 Aligned_cols=150 Identities=13% Similarity=0.022 Sum_probs=123.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|+|++|.....+++...|++..+......++.+.++|++|+...+.-..... +....+..+.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHH
Confidence 357899999999999999999999999999999999999999955443332211 2233378999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-------------------------------CHHHHH
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------------------------------VPLYHL 130 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~ 130 (227)
+ -.++.+..+....|++++++|+|++|+..|+..++.+.+ +....+
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y 179 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY 179 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence 9 467777788899999999999999999999988643221 334788
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 131 AYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
+.|.++...|+ |.+|++.+++++++
T Consensus 180 N~Ac~~i~~gk---y~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 180 NTACILIENGK---YNQAIELLEKALRI 204 (652)
T ss_pred HHHHHHHhccc---HHHHHHHHHHHHHH
Confidence 99999999999 99999999999443
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=3e-08 Score=76.07 Aligned_cols=157 Identities=13% Similarity=0.033 Sum_probs=123.0
Q ss_pred CCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
...+|.-|+.+++-....+.. ...+...+|.|++..|+|++|...|.-+...+.-+...+.+++-|++-.|.+.+|...
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 356788899888887766543 3356677899999999999999999999987767788999999999999999999887
Q ss_pred HHHHH--------------HHc------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 81 LNKYL--------------ETF------------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 81 ~~~~l--------------~~~------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
..++- +++ .+..+-...||.+.+..-.|.+|++.|.+++.-+|+.......+|.
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 76641 111 1112234456667777778888899998888888888878888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
||+++.- ++-+.+.+.-.++..|+
T Consensus 194 CyyKlDY---ydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 194 CYYKLDY---YDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHhcch---hhhHHHHHHHHHHhCCC
Confidence 8888888 88888888888888885
No 154
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.1e-09 Score=79.58 Aligned_cols=153 Identities=15% Similarity=0.046 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
.+|..|++++..-.+..|.+...+..+|.||....++..|..+|++.-...|.........+..+...+.+..|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999998877666677777777776666555443
Q ss_pred HH----------H--------------------HcC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158 84 YL----------E--------------------TFM--ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA 131 (227)
Q Consensus 84 ~l----------~--------------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 131 (227)
.. + .-| ++++...+.|-+.++.|+++.|+.-|+.+++....++..-++
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn 183 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN 183 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH
Confidence 21 1 123 346677889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 132 YADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 132 la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
+|.+++..|+ +..|+.+..+.++..
T Consensus 184 iALaHy~~~q---yasALk~iSEIieRG 208 (459)
T KOG4340|consen 184 LALAHYSSRQ---YASALKHISEIIERG 208 (459)
T ss_pred HHHHHHhhhh---HHHHHHHHHHHHHhh
Confidence 9999999999 999999888877653
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.11 E-value=4.3e-08 Score=72.28 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=114.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc---
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ--- 71 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~--- 71 (227)
|+.|++++|...|+.+...+|. ...+...++..+...+++++|+...++.+..+|+++ .+++..|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4568888888888888888874 356778888888888888888888888888887765 4566666665542
Q ss_pred -----CChHHHHHHHHHHHHHcCCCHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---H
Q 027158 72 -----GNFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYEELILSQPTV---P 126 (227)
Q Consensus 72 -----~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~ 126 (227)
.....|+..|+..++..|++.- --..+|..|.+.|.|-.|+..++.+++..|+. .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 1245778888888888888721 12356778888888888888888888877654 3
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.++..+..+|..+|- .++|... .+++..++.
T Consensus 205 eaL~~l~eaY~~lgl---~~~a~~~-~~vl~~N~p 235 (254)
T COG4105 205 EALARLEEAYYALGL---TDEAKKT-AKVLGANYP 235 (254)
T ss_pred HHHHHHHHHHHHhCC---hHHHHHH-HHHHHhcCC
Confidence 567778888888887 6666543 455555543
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.09 E-value=1.2e-08 Score=68.96 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH---HHHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~ 96 (227)
.+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+++..+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455666666666677777777777666665543 35566666667777777777777777777766663 3566
Q ss_pred HHHHHHHHccc---------------HHHHHHHHHHHHhhCCCCH
Q 027158 97 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 97 ~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~ 126 (227)
..|.+++.+.. ...|...|++.+...|++.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 66666665544 4555555555555555543
No 157
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.08 E-value=1.3e-09 Score=66.26 Aligned_cols=69 Identities=28% Similarity=0.230 Sum_probs=61.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 99 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 99 (227)
..++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999998887665443
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.08 E-value=2e-09 Score=83.87 Aligned_cols=177 Identities=17% Similarity=0.070 Sum_probs=135.7
Q ss_pred CCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCC-
Q 027158 3 CQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYSSLLEDNP- 55 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~~p- 55 (227)
.|.|++|+.+..+-++... ...++++.+|.+|...|+ ++.|.++|..-+++..
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988877666432 356788999999987753 4455666665555422
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--
Q 027158 56 -----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ-- 122 (227)
Q Consensus 56 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 122 (227)
....++.++|..|+-.|+++.|+..-+.-+.+.... -.++.++|+++.-.|+++.|++.|+..+.+.
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 124667888999999999999999998888775443 3488999999999999999999999887542
Q ss_pred --CC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-----CchhHHHhHHHHHHHHHhhhc
Q 027158 123 --PT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 123 --p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 182 (227)
.. .....+.+|..|....+ +++|+.++.+-+.+... ...++.|.++.++..++...+
T Consensus 268 lg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 22 24467889999999999 99999999987765322 578999999999999887443
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07 E-value=1.4e-08 Score=75.41 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYAD 134 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 134 (227)
.+..+.-++..|++..|...|...++..|++ +++++.||.+++.+|+|+.|...|..+++-.|++ |++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444555555555556666666665555554 4455556666666666666666666555555443 445566666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+...+|+ .++|...|+++++.-|+
T Consensus 224 ~~~~l~~---~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGN---TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcC---HHHHHHHHHHHHHHCCC
Confidence 6666665 66666666666665554
No 160
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5e-09 Score=74.06 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=48.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 63 RRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
.-|.-++..|++++|..-|..++.+.|..+ -.+.+.|.+.+.++.++.|+..+.++++++|.+..++.+.|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 334444455555555555555555544432 234444555555555555555555555555555555555555555
Q ss_pred HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 138 TLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 138 ~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
++.+ +++|+..|+++++++|.
T Consensus 180 k~ek---~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEK---YEEALEDYKKILESDPS 200 (271)
T ss_pred hhhh---HHHHHHHHHHHHHhCcc
Confidence 5544 55555555555555553
No 161
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=9e-08 Score=77.68 Aligned_cols=167 Identities=16% Similarity=0.057 Sum_probs=125.7
Q ss_pred CCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
+.++|++|+.+ +..++. .....+..+.|.++.++.++|+..++ ..++.+..+....|.+++++|+|++|.
T Consensus 58 q~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 58 QLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred hhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH
Confidence 45678887743 444442 12223789999999999999999988 456777778889999999999999999
Q ss_pred HHHHHHHHHc------------------------------CC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----
Q 027158 79 EWLNKYLETF------------------------------MA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----- 122 (227)
Q Consensus 79 ~~~~~~l~~~------------------------------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 122 (227)
..|+..++-+ |. +.+.+++.|-++...|+|.+|++.+++++.+.
T Consensus 131 diY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 131 DIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 9999864322 22 34578899999999999999999999995432
Q ss_pred --CCC--------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhc
Q 027158 123 --PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 123 --p~~--------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (227)
..+ ..+...++.++..+|+ ..+|...|...++.+|. +.. .++++..++..+.+
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~~~i~~~~~-D~~---~~Av~~NNLva~~~ 273 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYVDIIKRNPA-DEP---SLAVAVNNLVALSK 273 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhcCC-Cch---HHHHHhcchhhhcc
Confidence 111 2378899999999999 99999999999999985 432 23445555554443
No 162
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1e-08 Score=72.51 Aligned_cols=114 Identities=25% Similarity=0.253 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
+-.-|+-++..|+|++|..-|..++...|..+ ..|.+.|.+++.++.++.|+..+.++++++|....+....|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44568889999999999999999999998753 5678899999999999999999999999999999999999999
Q ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
|.....|++|+.-|.+.+..+|....+.-.++.+--...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999988777666655443333
No 163
>PLN03077 Protein ECB2; Provisional
Probab=99.05 E-value=2.2e-08 Score=88.66 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=109.9
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
.|++++|...|+.. +.+...|..+...|...|+.++|+.+|+++.+. .|+ ...+..+...+.+.|.+++|..+
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence 46677777777665 445667777777777778888888888777764 343 34455566667777788888888
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 81 LNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 81 ~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
|+...+..+- +...|..+..++.+.|++++|.+++++. ...|+ ..+|..+-..+...|+ .+.+....++++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~---~e~~e~~a~~l~~l 686 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH---VELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhh
Confidence 8777744332 3456777777777888888887777764 23443 4555555566666677 77777777777777
Q ss_pred cCCCchhHHHhHHHHHHHHHh
Q 027158 159 TGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~ 179 (227)
.|+ +...+..++-++...++
T Consensus 687 ~p~-~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 687 DPN-SVGYYILLCNLYADAGK 706 (857)
T ss_pred CCC-CcchHHHHHHHHHHCCC
Confidence 775 55555555555544333
No 164
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=7.6e-09 Score=76.84 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHH
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE 100 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 100 (227)
.+..+.-+...|+|..|...|...++.+|++ +.+++-||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6788889999999999999999999999986 5889999999999999999999999999998876 789999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158 101 IYVSLQMYKQAAFCYEELILSQPTVPLYHLA 131 (227)
Q Consensus 101 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 131 (227)
+....|+.++|...|+++++..|..+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998876544
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=1.1e-07 Score=73.72 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=99.9
Q ss_pred CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
+|+++.|-.++.++.+.-+ +...+....+......|++..|..-..+++...|.++.+......+|...|++.....++
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455555555555555432 233344445555555555555555555555555555555555555555555554444444
Q ss_pred HHHHHHc------------------------------------------CCCHHHHHHHHHHHHHcccHHHHHH------
Q 027158 82 NKYLETF------------------------------------------MADHDAWRELAEIYVSLQMYKQAAF------ 113 (227)
Q Consensus 82 ~~~l~~~------------------------------------------p~~~~~~~~la~~~~~~~~~~~A~~------ 113 (227)
.+.-+.. .+++.....++.-+...|+.++|.+
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3321110 1123333344444555555555544
Q ss_pred -------------------------HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158 114 -------------------------CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 168 (227)
Q Consensus 114 -------------------------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 168 (227)
..++.+...|++|..+..+|..+++.+. |.+|..+|+.+++..|+ ...+.
T Consensus 291 k~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s--~~~~~ 365 (400)
T COG3071 291 KRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRPS--ASDYA 365 (400)
T ss_pred HhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC--hhhHH
Confidence 4445555577888899999999999999 99999999999999885 44445
Q ss_pred hHHHHHHHHHh
Q 027158 169 GICLCSSAIAQ 179 (227)
Q Consensus 169 ~l~~~~~~~~~ 179 (227)
-++.++..+++
T Consensus 366 ~la~~~~~~g~ 376 (400)
T COG3071 366 ELADALDQLGE 376 (400)
T ss_pred HHHHHHHHcCC
Confidence 56666666664
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.03 E-value=1e-07 Score=66.78 Aligned_cols=128 Identities=22% Similarity=0.189 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIY 102 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~ 102 (227)
-.+.+|......|++.+|..+|++++. ...+++..+..++...+..+++..|...+++..+.+|. +++....+|..+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 345667777777777778777777776 35566777777777777777777777777777777765 366677777777
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 103 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 103 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
...|.+.+|...|+.++...|. +.+...++..+.++|+ ..+|...+..+.+
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v~d 221 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAVVD 221 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHHHH
Confidence 7777777777777777777764 5666667777777776 6666555544443
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.03 E-value=6.3e-09 Score=70.23 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGN- 73 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~- 73 (227)
|+.|+|.+|++.|+.+...+|. ...+...++.+++..+++++|+..+++.++++|+++ .+++..|.+++.+..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 4679999999999999999984 457889999999999999999999999999999875 778899998888776
Q ss_pred --------------hHHHHHHHHHHHHHcCCCHHH
Q 027158 74 --------------FPTAIEWLNKYLETFMADHDA 94 (227)
Q Consensus 74 --------------~~~A~~~~~~~l~~~p~~~~~ 94 (227)
...|...|++.+...|++..+
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999998654
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.02 E-value=2.1e-07 Score=68.69 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=125.3
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 96 (227)
.+..++..|...++.|+|++|+..|+.+...+|.++ .+...++..+...+++++|+..+++.+.++|.+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 456788999999999999999999999999988765 77889999999999999999999999999998854 667
Q ss_pred HHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHHHHH
Q 027158 97 ELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKKY 151 (227)
Q Consensus 97 ~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A~~~ 151 (227)
..|.+++.. .-...|+..|+..+...|++.. --..+|..|.+.|. +..|+..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~nR 189 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAINR 189 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHHH
Confidence 777776654 3357889999999999998743 23567788889999 9999999
Q ss_pred HHHHhhhcCC--CchhHHHhHHHHHHHHH
Q 027158 152 YASTIDLTGG--KNTKALFGICLCSSAIA 178 (227)
Q Consensus 152 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 178 (227)
++.+++.-|+ ....++..+..++..++
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 9999998775 23445556666666655
No 169
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.01 E-value=1.1e-08 Score=71.34 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc--
Q 027158 40 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-- 107 (227)
Q Consensus 40 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-- 107 (227)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5667777777777788888777777776665432 4567777888888888888888888888877643
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 108 ---------YKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 108 ---------~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
|++|..+|++|...+|++..++..|..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 777888888888888887766555543
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=2.9e-09 Score=81.17 Aligned_cols=109 Identities=20% Similarity=0.132 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
.-..|+.|+.+|+|++|+.+|.+++..+|.++..+.+++..|+++.++..|...++.++.++.....+|...+.+-...|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34568889999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158 107 MYKQAAFCYEELILSQPTVPLYHLAYADV 135 (227)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (227)
+..+|-.-++.++.+.|++....-.++.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999999999877665555443
No 171
>PLN03077 Protein ECB2; Provisional
Probab=98.98 E-value=5.8e-08 Score=86.02 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=128.3
Q ss_pred CCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTA 77 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A 77 (227)
..|+.++|+.+|+++.... |+. ..+..+-..+...|.+++|..+|+.+.+..+ .+...|..+..++.+.|++++|
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 3689999999999998754 444 4455555678889999999999999985433 2457889999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
...+++. ...| ++..|..|-..+...|+.+.+....++++++.|++...+..++.+|...|+ +++|....+...+
T Consensus 645 ~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~---~~~a~~vr~~M~~ 719 (857)
T PLN03077 645 YNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK---WDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC---hHHHHHHHHHHHH
Confidence 9999985 2444 477898888899999999999999999999999999999999999999999 9999999888765
Q ss_pred h
Q 027158 158 L 158 (227)
Q Consensus 158 ~ 158 (227)
.
T Consensus 720 ~ 720 (857)
T PLN03077 720 N 720 (857)
T ss_pred c
Confidence 4
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.97 E-value=5.1e-09 Score=83.17 Aligned_cols=69 Identities=14% Similarity=-0.002 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158 54 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ 122 (227)
Q Consensus 54 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 122 (227)
+|+++.+++++|..+...|++++|+..|+++++++|+++.+ |+++|.+|..+|++++|+.++++++.+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 67888899999999999999999999999999999998854 8999999999999999999999998873
No 173
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.96 E-value=5.6e-09 Score=82.95 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=65.5
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158 19 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETF 88 (227)
Q Consensus 19 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 88 (227)
.+|+++..++.+|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|+.++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999854 9999999999999999999999999973
No 174
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=2.3e-07 Score=73.80 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=140.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
+++++..|.+++++++..+..+...|.-.+.+-+.......|..++++++..-|.-...|+....+--.+|+...|.+.|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
++.++..|+ ..+|......-.+.+.++.|...|++.+-.+|+ ...|...|..-.+.|+ ...|...|..+++.-.+
T Consensus 165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhhh
Confidence 999999985 678888888888889999999999999988875 6678888888888998 88888888888876554
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.93 E-value=5e-07 Score=66.44 Aligned_cols=168 Identities=22% Similarity=0.221 Sum_probs=122.8
Q ss_pred CCChHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHH
Q 027158 3 CQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIE 79 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~ 79 (227)
.+.+..+...+..... ..+.....+...+......+++..++..+..++...+.........+. ++...|+++.|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566777777777776 566777777788888888888888888888888877766555555555 7788888888888
Q ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 80 WLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 80 ~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
.+.+++...| .........+..+...++++.|+..+.+++...+. ....+..++..+...+. +..|...+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~ 228 (291)
T COG0457 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK---YEEALEYYEKA 228 (291)
T ss_pred HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc---HHHHHHHHHHH
Confidence 8888877666 34556666666677778888888888888888887 67778888888888887 88888888888
Q ss_pred hhhcCCCchhHHHhHHHHH
Q 027158 156 IDLTGGKNTKALFGICLCS 174 (227)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~ 174 (227)
+...|. ....+.......
T Consensus 229 ~~~~~~-~~~~~~~~~~~~ 246 (291)
T COG0457 229 LELDPD-NAEALYNLALLL 246 (291)
T ss_pred HhhCcc-cHHHHhhHHHHH
Confidence 888774 333333333333
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.93 E-value=9.2e-07 Score=64.99 Aligned_cols=168 Identities=22% Similarity=0.144 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHhCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
+..+...+.......+. ........+..+...+++..+...+...+. ..+.....+...+......+++..++..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555554 255556666666666666666666666665 45556666666666666666666666666
Q ss_pred HHHHHHcCCCHHHHHHHHH-HHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 82 NKYLETFMADHDAWRELAE-IYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
..++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++ +..|+..+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~ 195 (291)
T COG0457 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEKALK 195 (291)
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHHHHh
Confidence 6666666655444444444 56666666666666666666554 234444555555556666 6666666666666
Q ss_pred hcCCCchhHHHhHHHHHHH
Q 027158 158 LTGGKNTKALFGICLCSSA 176 (227)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~ 176 (227)
..+......+..+..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred hCcccchHHHHHhhHHHHH
Confidence 6653123444444444443
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=72.66 Aligned_cols=104 Identities=22% Similarity=0.147 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 103 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 103 (227)
...++..|..|-..|-+.-|.--|.+++.+.|..+.+++.+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHH
Q 027158 104 SLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 104 ~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
--|+|.-|.+-+.+-.+.+|++|.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 666666666666666666666553
No 178
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=8.6e-09 Score=78.66 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
....|+-|+.+|.|++|+.+|.+++..+|.++..+.+.|.+|++...|..|..-+..|+.++.....++.+.+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhhhcCC
Q 027158 141 GVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~ 161 (227)
. ..+|.+.++.++.+.|.
T Consensus 180 ~---~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 N---NMEAKKDCETVLALEPK 197 (536)
T ss_pred h---HHHHHHhHHHHHhhCcc
Confidence 9 99999999999999996
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.91 E-value=6.1e-07 Score=63.02 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=114.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHcccHHHH
Q 027158 33 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TFMADHDAWRELAEIYVSLQMYKQA 111 (227)
Q Consensus 33 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A 111 (227)
...+.=+.+....-..+.+...|+.. -.+.++......|++.+|...|++++. ++.+++.....++...+..+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33444556666666666666666544 356899999999999999999999986 5778899999999999999999999
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHH
Q 027158 112 AFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS 174 (227)
Q Consensus 112 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (227)
...+++..+.+|. .+..+..+|..+...|. +..|...|+.+++--|+...+.+|+.-+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg~~ar~~Y~e~La~ 205 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK---YADAESAFEVAISYYPGPQARIYYAEMLAK 205 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCC---chhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999884 57788999999999999 999999999999999986677777654443
No 180
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.2e-07 Score=72.85 Aligned_cols=141 Identities=14% Similarity=0.004 Sum_probs=108.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158 34 LEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 112 (227)
Q Consensus 34 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 112 (227)
+....+|..|+.+++-.+..+.... ..-.-+|.|+++.|++++|...|.-+...+..++..|.+||-+++-.|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4456899999999988877654433 445568999999999999999999999887778899999999999999999998
Q ss_pred HHHHHHHh--------------hCC------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhH
Q 027158 113 FCYEELIL--------------SQP------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 166 (227)
Q Consensus 113 ~~~~~al~--------------~~p------------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (227)
....++-+ ++. +...-...+|.+++..-. |++|+..|++++.-+|. ....
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H---YQeAIdvYkrvL~dn~e-y~al 187 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH---YQEAIDVYKRVLQDNPE-YIAL 187 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH---HHHHHHHHHHHHhcChh-hhhh
Confidence 77655421 111 111234566667777777 99999999999999995 5555
Q ss_pred HHhHHHHHHHHH
Q 027158 167 LFGICLCSSAIA 178 (227)
Q Consensus 167 ~~~l~~~~~~~~ 178 (227)
-..+++|+..+.
T Consensus 188 NVy~ALCyyKlD 199 (557)
T KOG3785|consen 188 NVYMALCYYKLD 199 (557)
T ss_pred HHHHHHHHHhcc
Confidence 567788887654
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.88 E-value=1.3e-07 Score=80.06 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=118.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
+|.+++.+|+....+++.++|+.+.+....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..+|+.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 47789999999999999999999999999999999999999999888888888889889999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
|++++..+|+ ......+-.+|.+.+.|.+-...--+..+..|.++.+++....+..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 9999999999 8888999999999998877666655666677877765555444433
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.88 E-value=5.2e-09 Score=64.45 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHc---C----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF---M----ADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
.++..+|.++...|++++|+.+|++++++. + ..+.++.++|.++...|++++|+.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555555555554431 1 1123444555555555555555555555543
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.85 E-value=2.6e-07 Score=71.10 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 104 (227)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++.+|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999997777778999999999777 5666669999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 105 LQMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.|+.+.|..+|++++..-|... ..|......-...|+ .+......+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence 9999999999999998776654 578888888888999 99999999998888775
No 184
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.85 E-value=6.7e-08 Score=67.45 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC-
Q 027158 74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV- 142 (227)
Q Consensus 74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~- 142 (227)
++.|.+.++.....+|.+++.+++-|.++..+ ..+++|+.-|++|+.++|+...+++.+|.++...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 57789999999999999999998888887766 3467889999999999999999999999999988751
Q ss_pred -------CcHHHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158 143 -------DNILLAKKYYASTIDLTGGKNTKALFGICL 172 (227)
Q Consensus 143 -------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 172 (227)
..|++|..+|+++++.+|+ +......+-+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 3488999999999999996 5444434433
No 185
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.83 E-value=4.3e-07 Score=60.01 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAYADVL 136 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 136 (227)
+...|......|+.+.|++.|.+++.+-|..+.+|.+.+..+.-+|+.++|++-+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34567777888999999999999999999999999999999999999999999999999876443 34688889999
Q ss_pred HHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 137 YTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 137 ~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
...|+ -+.|...|+.+.++.+.
T Consensus 126 Rl~g~---dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGN---DDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCc---hHHHHHhHHHHHHhCCH
Confidence 99999 99999999999888764
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.83 E-value=3.8e-07 Score=60.24 Aligned_cols=98 Identities=21% Similarity=0.134 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHH
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY 102 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~ 102 (227)
+-..|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..+++..|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999999987654 45788999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCC
Q 027158 103 VSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 103 ~~~~~~~~A~~~~~~al~~~p~ 124 (227)
...|+-+.|..-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999998876543
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.6e-07 Score=68.25 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc----C--CCHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF----M--ADHDAWRE 97 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~----p--~~~~~~~~ 97 (227)
.+.+.+..++.-.|+|.-....+.++++.+ |.++.....+|.+.++.|+.+.|..+|+++-+.. . ..-....+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677888888999999999999999988 6778888999999999999999999999655432 2 22345667
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.+.++.-.+++.+|...|.+.+..+|.++.+..+.|.|+...|+ ...|++..+.++...|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence 78888889999999999999999999999999999999999999 99999999999999997
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.80 E-value=2.7e-08 Score=77.73 Aligned_cols=177 Identities=16% Similarity=0.090 Sum_probs=107.6
Q ss_pred CCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHH------------------------------
Q 027158 3 CQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYS------------------------------ 48 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~------------------------------ 48 (227)
+|+....+.+|+.+++...++. .++..+|+.|+-.++|.+|+++-.
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G 109 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG 109 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence 5677777888888888776543 345567777777777777766532
Q ss_pred ----------HHHhcC------CCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHcCCC-
Q 027158 49 ----------SLLEDN------PLDPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD- 91 (227)
Q Consensus 49 ----------~~l~~~------p~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~l~~~p~~- 91 (227)
+-+... -....+++++|.+|...|+ ++.|.++|..-+++....
T Consensus 110 ~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg 189 (639)
T KOG1130|consen 110 AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG 189 (639)
T ss_pred ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222110 0113455566666665542 233344444433332221
Q ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc-
Q 027158 92 -----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT- 159 (227)
Q Consensus 92 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~- 159 (227)
..++.+||+.|+-.|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+ ++.|+++|+..+.+.
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNLAI 266 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHHHH
Confidence 2356677777778888888887777666554322 3478889999999999 999999998876542
Q ss_pred ---CC-CchhHHHhHHHHHHHHHhhhc
Q 027158 160 ---GG-KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 160 ---~~-~~~~~~~~l~~~~~~~~~~~~ 182 (227)
.. .....-|.++-.+.-+.++.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 21 234455566666666665554
No 189
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.79 E-value=1.3e-06 Score=67.91 Aligned_cols=130 Identities=17% Similarity=0.070 Sum_probs=111.6
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
+++.+....+.-+...|+.++|.+....+++...+.. +..+ .-....++...-++..++++...|+++..+..||..
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 5677888888999999999999999999999765443 1111 223456788889999999999999999999999999
Q ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
+++.+.|.+|..+|+.++...|. ...+..+|.++...|+ ..+|...+++++..
T Consensus 338 ~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~ 390 (400)
T COG3071 338 ALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE---PEEAEQVRREALLL 390 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 99999999999999999998875 4557889999999999 99999999999854
No 190
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.77 E-value=1.2e-08 Score=62.80 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----CCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 89 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 89 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
|+-..++.++|.+|...|+|++|+.+|++++.+. +++ ..++.++|.++..+|+ +++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence 4456789999999999999999999999999652 222 4579999999999999 999999999999864
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-06 Score=63.09 Aligned_cols=145 Identities=21% Similarity=0.163 Sum_probs=120.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 103 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 103 (227)
......-|.++...|++++|....... .+.++...-..++.+..+++-|...+++..+++.+ .....||..+.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHH
Confidence 345566678999999999999877662 34556666667888999999999999999887744 45555666655
Q ss_pred Hc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHh
Q 027158 104 SL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 104 ~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (227)
.. +++..|..+|++.-...|..+......|.++..+|+ +++|...++.++..+++ ++.++.+++.+....+.
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 43 579999999999988788889999999999999999 99999999999999996 99999999999988875
No 192
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-07 Score=68.54 Aligned_cols=93 Identities=14% Similarity=-0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccH
Q 027158 29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 108 (227)
Q Consensus 29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~ 108 (227)
..|+.++....|+.|+..|.+++..+|..+..|.+.+.|++...+++.+.....++++++|+...+++.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027158 109 KQAAFCYEELILS 121 (227)
Q Consensus 109 ~~A~~~~~~al~~ 121 (227)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999643
No 193
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=4.1e-06 Score=74.36 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=104.0
Q ss_pred CCCCChHHHHHHHHHHHHhC-C----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 027158 1 MDCQCLDVAKDCIKVLQKQF-P----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 75 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~-p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 75 (227)
|+.++.++|.+++++++... + .-..+|..+-+....-|.-+...+.|+++.+.. +-..++..|..+|...+.++
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcch
Confidence 34567778888888877653 3 223445555555555565666666677766643 22345666667777777777
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
+|.++|+..++.+.+....|..+|..++++++-+.|...+.+|++.-|. +.......|...++.|+ .+.+...|+
T Consensus 1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD---aeRGRtlfE 1624 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD---AERGRTLFE 1624 (1710)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC---chhhHHHHH
Confidence 7777777777777666777777777777777777777777777777665 55666667777777777 677777777
Q ss_pred HHhhhcCC
Q 027158 154 STIDLTGG 161 (227)
Q Consensus 154 ~~~~~~~~ 161 (227)
..+.-.|.
T Consensus 1625 gll~ayPK 1632 (1710)
T KOG1070|consen 1625 GLLSAYPK 1632 (1710)
T ss_pred HHHhhCcc
Confidence 77766664
No 194
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.3e-06 Score=75.86 Aligned_cols=152 Identities=12% Similarity=0.015 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD----PVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~----~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
-.+..+-|++++.-+|++.-.|+.......+.++.+.|.+..++++.. ++.. ..+|..+-++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344566788888889999989988888888899999999999999885 4433 25566666666666777778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
|+++.+.. +....+..|..+|...+++++|.++++..++...+....|..+|..++..++ -+.|...+.+|++.-|
T Consensus 1520 FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne---~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE---AEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH---HHHHHHHHHHHHhhcc
Confidence 88888765 3356788889999999999999999999998888888899999999999988 8999999999999888
Q ss_pred C
Q 027158 161 G 161 (227)
Q Consensus 161 ~ 161 (227)
.
T Consensus 1596 k 1596 (1710)
T KOG1070|consen 1596 K 1596 (1710)
T ss_pred h
Confidence 6
No 195
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=6.2e-06 Score=73.74 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIA 68 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~ 68 (227)
.|++++|...+..+....+. ...+...++.++...|++++|...+++++...|... .+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 46777777777776654321 123344566777778888888888888877544321 3455677777
Q ss_pred HHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHH
Q 027158 69 KAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--------VPLYHLAYAD 134 (227)
Q Consensus 69 ~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~ 134 (227)
...|++++|...+++++...... ..++..+|.++...|+++.|...+++++..... ....+..+|.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 78888888888888877654321 234566777888888888888888887764211 1233456677
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
+++..|+ +++|...+.+++...
T Consensus 582 ~~~~~G~---~~~A~~~~~~al~~~ 603 (903)
T PRK04841 582 LLWEWAR---LDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHhcC---HHHHHHHHHHhHHhh
Confidence 7778888 888888888777653
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.64 E-value=9.2e-08 Score=51.80 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 133 (227)
+|..+|.+|...|++++|+.+|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555554444
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=5.7e-06 Score=73.97 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=123.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKA 70 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~ 70 (227)
..|++++|...+++++...|... .+...+|.++...|++++|...+.+++...... ..++..++.++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 36899999999999988655322 345678888999999999999999998763321 2456778999999
Q ss_pred cCChHHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 027158 71 QGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----VPLYHLAYADVLY 137 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 137 (227)
.|++++|...+++++..... ....+..+|.++...|++++|...+++++..... ...++..+|.++.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999999999886322 1234567899999999999999999999875321 2446677899999
Q ss_pred HcCCCCcHHHHHHHHHHHhhhcC
Q 027158 138 TLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 138 ~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
..|+ ++.|...+.++..+.+
T Consensus 624 ~~G~---~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 624 ARGD---LDNARRYLNRLENLLG 643 (903)
T ss_pred HcCC---HHHHHHHHHHHHHHHh
Confidence 9999 9999999999977643
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.62 E-value=1.4e-07 Score=51.10 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
.++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666677777777777777667766666666654
No 199
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3e-06 Score=63.97 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=119.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
....+|..|++++..-.+..|.+...+..+|.||....++..|..+|++.-...|.........+..++..+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999888777777877777777777655
Q ss_pred HHHHHh------------------------------hCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCC
Q 027158 115 YEELIL------------------------------SQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 162 (227)
Q Consensus 115 ~~~al~------------------------------~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~ 162 (227)
...... .-| ++.....+.|.+.++.|+ ++.|+.-|+.+++... .
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG-y 176 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG-Y 176 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecccc---HHHHHHHHHHHHhhcC-C
Confidence 433221 123 345578888999999999 9999999999999876 5
Q ss_pred chhHHHhHHHHHHHHHhhh
Q 027158 163 NTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~ 181 (227)
++-..|++++|+.+-++..
T Consensus 177 qpllAYniALaHy~~~qya 195 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYA 195 (459)
T ss_pred CchhHHHHHHHHHhhhhHH
Confidence 8888899999988766533
No 200
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=5.9e-05 Score=55.10 Aligned_cols=127 Identities=19% Similarity=0.116 Sum_probs=90.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----C-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH------HHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDN----P-LD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD------AWREL 98 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~----p-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l 98 (227)
|+.|...++|..|-..|-++-... . .+ ...|..-+.+|.+ +++.+|+.+++++++++.+-.. .+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 445555566666666666665431 1 12 2445455555554 4899999999999999866533 45689
Q ss_pred HHHHHHc-ccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 99 AEIYVSL-QMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 99 a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
|.+|... .++++|+.+|+++-...... ...+...|..-..+++ |.+|+..|+++....-+
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq---Y~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ---YSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 9999876 99999999999998655432 2356677777778888 99999999999876554
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.1e-05 Score=59.94 Aligned_cols=149 Identities=13% Similarity=-0.019 Sum_probs=119.1
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~ 78 (227)
-|++++|+..... ..+.++..+-..++.+..+.+-|...++++...+.+ ..+..++..+.. .+...+|.
T Consensus 121 ~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 121 DGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred CCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHH
Confidence 4677777765544 335566677778999999999999999999877643 444556655544 34688999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhh
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK-YYASTID 157 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~-~~~~~~~ 157 (227)
-+|+..-+..|..+......+.+.+.+|+|++|...++.++..+++++.++.++-.+-...|. -.++.. ...+...
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHh
Confidence 999999998888999999999999999999999999999999999999999999999999998 555544 4455555
Q ss_pred hcCC
Q 027158 158 LTGG 161 (227)
Q Consensus 158 ~~~~ 161 (227)
..|.
T Consensus 271 ~~p~ 274 (299)
T KOG3081|consen 271 SHPE 274 (299)
T ss_pred cCCc
Confidence 5664
No 202
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00011 Score=53.67 Aligned_cols=171 Identities=18% Similarity=0.083 Sum_probs=117.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHc-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHH
Q 027158 36 AKGLWAEAEKAYSSLLEDNPLDPVL------HKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIY 102 (227)
Q Consensus 36 ~~~~~~~A~~~~~~~l~~~p~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~ 102 (227)
+.+++.+|+.++++++++..+-... +..+|.+|-.. .++++|+.+|+++-+..... ...+...+...
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3457888888888888875544332 34677777655 88999999999998876543 23566677777
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhHHHHH
Q 027158 103 VSLQMYKQAAFCYEELILSQPTVPL-------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCS 174 (227)
Q Consensus 103 ~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 174 (227)
...++|.+|+..|++.....-+++. .++.-|.|+.-.++ .-.+...+++..+++|. .+.|...-+....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 8889999999999999987766643 45666777777788 88888888888999997 4455544444444
Q ss_pred HHHHhhhcC----CCccccchHHHHHHHHHHHHHHHHhh
Q 027158 175 SAIAQLTKG----RNKEDKESPELQSLAAAALEKDYKQR 209 (227)
Q Consensus 175 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (227)
..+...... .-++-.....+..|....|.++-+..
T Consensus 242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~si 280 (288)
T KOG1586|consen 242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSI 280 (288)
T ss_pred HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 443321110 00111235677788888887776644
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=1.9e-05 Score=67.40 Aligned_cols=136 Identities=12% Similarity=0.003 Sum_probs=110.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
...+++.+|.....+.++..|+...+...-|..+.++|+.++|..+++..-...+++....-.+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34588999999999999999999999999999999999999999888887777888888999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHH
Q 027158 115 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 175 (227)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (227)
|++++..+|. ......+=.+|.+.+. |.+-...--+.-+..|. ++..+|..+....
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk-~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK-RAYYFWSVISLIL 155 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc-ccchHHHHHHHHH
Confidence 9999999999 7777777777777777 65444333334446664 5444444444443
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.2e-07 Score=66.71 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
+..-|..++...+++.|+.+|-+++.++|..+..|.+.+.++++..+|+.+..-+.+++++.|+....++.+|.++....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34556677777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 027158 141 GVDNILLAKKYYASTIDL 158 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~ 158 (227)
. +++|+..+.++.++
T Consensus 93 ~---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 G---YDEAIKVLQRAYSL 107 (284)
T ss_pred c---ccHHHHHHHHHHHH
Confidence 9 99999999999665
No 205
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.53 E-value=2e-07 Score=74.17 Aligned_cols=108 Identities=17% Similarity=0.075 Sum_probs=94.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 109 (227)
.+...+..++++.|+..|.++++++|+.+..+-+.+..+...+++..|+..+.++++.+|....+|+..|...+..+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 45566667889999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 110 QAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
+|...|+....+.|+++.+...+..|-.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999888777766544
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.52 E-value=1.3e-05 Score=64.60 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=116.6
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC----------------CC--H
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-------NP----------------LD--P 58 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p----------------~~--~ 58 (227)
.+...-++...++++.+|+.+.++..++.-.. .-..+|..+|+++++. .. .+ .
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 35566778889999999999999988875322 2345566666665553 10 00 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPLYHLAYADV 135 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 135 (227)
.+...++.|..+.|+.++|++.++..++.+|. +..+..+|..++...+.|.++..++.+.=.+ -|......+.-|..
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45568899999999999999999999998886 4668999999999999999999998885333 25555555555544
Q ss_pred HHH-cCC---------CC---cHHHHHHHHHHHhhhcCCCchhHHHhHH
Q 027158 136 LYT-LGG---------VD---NILLAKKYYASTIDLTGGKNTKALFGIC 171 (227)
Q Consensus 136 ~~~-~g~---------~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 171 (227)
-.+ .|+ .+ -...|.+.+.++++.+| +.+..+.++.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP-HVp~YLLe~K 387 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP-HVPKYLLEMK 387 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC-CCchhhhccC
Confidence 332 111 00 12457889999999999 4776665443
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.52 E-value=5.9e-06 Score=63.63 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
..+.|..+|.++....+-...++...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|++
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 36789999999986555678899999998777 56667799999999999999999999999999999999999999999
Q ss_pred HHHHcCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 84 YLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 84 ~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
++..-|... ..|......-...|+.+....+.+++.+..|.+...
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 998877654 688888899999999999999999999999885544
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.50 E-value=1.5e-07 Score=47.78 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAA 112 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 112 (227)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 209
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.5e-06 Score=60.08 Aligned_cols=101 Identities=9% Similarity=-0.018 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------cCCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
..++...|+-++..|++.+|...|+.++-. .|.+ ...+.+.++|+...|+|-++++.+...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999987643 3444 3467899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
..+|.+..+++..|.++...-+ ..+|...|.++++++|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence 9999999999999999999999 99999999999999996
No 210
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.2e-05 Score=61.72 Aligned_cols=151 Identities=12% Similarity=-0.112 Sum_probs=119.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCChHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~l~~~~~~~~~~~~A~ 78 (227)
.|+..+|....+++++.+|.+.-++...-..++..|+...-...+++++.. +|+. ..+...++..+...|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 467778888899999999988888888888888889999888889998887 6666 455566777888889999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
+.-.++++++|.+.-+...++.++...|++.++.++..+.-..-.... .-+...|.++...+. ++.|++.|.+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKALEIYDR 272 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHHHHHHHH
Confidence 999999999999999989999999999999999888766432211111 124455777777788 9999998876
Q ss_pred Hh
Q 027158 155 TI 156 (227)
Q Consensus 155 ~~ 156 (227)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 54
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-05 Score=59.21 Aligned_cols=129 Identities=18% Similarity=0.048 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-HH---HHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-HD---AWRELAEI 101 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~---~~~~la~~ 101 (227)
.-+..+......|++.+|...+..++...|.+..+...++.++...|+.+.|...+...-...... .. ++..+..-
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 344555566666777777777777777777777777777777777777777666665532111111 00 11122222
Q ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 102 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 102 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
....++.. .+++.+..+|++..+.+.+|..+...|+ .+.|.+.+-..+..+.+
T Consensus 216 aa~~~~~~----~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 216 AAATPEIQ----DLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG 268 (304)
T ss_pred HhcCCCHH----HHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 22222222 2344455667777777777777777777 77777776666666543
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=6.3e-06 Score=61.13 Aligned_cols=124 Identities=16% Similarity=0.101 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHcCChH
Q 027158 3 CQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----N--PLDPVLHKRRVAIAKAQGNFP 75 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~--p~~~~~~~~l~~~~~~~~~~~ 75 (227)
.|.|.-+...+.+++..+| ..+.....+|.+.++.|+.+.|..+++++-+. + ....-+..+.+.++.-.+++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 5778889999999999994 68888889999999999999999999965443 2 223455667778888899999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158 76 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 76 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 126 (227)
.|...+.+++..+|.++.+..+.|.|.+-.|+...|++..+.++...|...
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999999653
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.45 E-value=2.8e-05 Score=64.15 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=110.7
Q ss_pred CCChHHHHHHHHHHHHhCC-CchhhH-HHHHHH-----H--H--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 027158 3 CQCLDVAKDCIKVLQKQFP-ESKRVG-RLEGIL-----L--E--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 71 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p-~~~~~~-~~~a~~-----~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 71 (227)
.|+-+.++..+.++.+-.. ..+-+- ..++.. + . .....+.|.+.+.......|+..-.....|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3677788888888766221 222221 111110 1 1 245677899999999999999988888999999999
Q ss_pred CChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcH-
Q 027158 72 GNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNI- 145 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~- 145 (227)
|+.++|+..|++++.....- .-.++.+|.++..+++|++|..+|.+..+.+.- ...+.+..|.++...|+ .
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~ 357 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE 357 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence 99999999999887433222 346788999999999999999999998886553 34566777888888888 6
Q ss_pred ------HHHHHHHHHHhhhc
Q 027158 146 ------LLAKKYYASTIDLT 159 (227)
Q Consensus 146 ------~~A~~~~~~~~~~~ 159 (227)
++|...|.++-...
T Consensus 358 ~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 77777777766543
No 214
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.44 E-value=1.8e-05 Score=61.41 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------- 91 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------- 91 (227)
.+...+|..+...+.++++++.|+.+++..- ++ ..++..+|..+-...++++|.-+..++.++-.+-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4566788889999999999999999998732 22 2567889999999999999999999998874322
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-
Q 027158 92 ---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG- 161 (227)
Q Consensus 92 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~- 161 (227)
..+.+.++..+...|..-.|.++++++.++. |........+|++|...|+ .+.|..-|+++......
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhh
Confidence 3467889999999999999999999998764 3345678889999999999 99999999999876432
Q ss_pred ----CchhHHHhHHHHHHHHHhhhc
Q 027158 162 ----KNTKALFGICLCSSAIAQLTK 182 (227)
Q Consensus 162 ----~~~~~~~~l~~~~~~~~~~~~ 182 (227)
..+.++-+.+.|.....-..+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 457788888888888776554
No 215
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.42 E-value=7.1e-05 Score=62.11 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=101.5
Q ss_pred CCChHHHHHHHHHHHHh-CC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Q 027158 3 CQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQG 72 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~ 72 (227)
.|+..+-+..|..++.. +| .....|...|..|...|+.+.|...|+++.+..-.. ..+|...|..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 45667777777777754 55 234678888999999999999999999998864322 577888888888888
Q ss_pred ChHHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 73 NFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 73 ~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
+++.|..+.+++...-.. +...|..+++.....|-++.....|++.+.+.--.|....+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888888888887653211 13356666666666677777777777766665555555555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.+....- +++|...|++.+.+
T Consensus 520 fLEeh~y---feesFk~YErgI~L 540 (835)
T KOG2047|consen 520 FLEEHKY---FEESFKAYERGISL 540 (835)
T ss_pred HHHhhHH---HHHHHHHHHcCCcc
Confidence 5544433 33443333333333
No 216
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.41 E-value=8.5e-07 Score=70.69 Aligned_cols=115 Identities=16% Similarity=0.057 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
..-+.-.+..+.++.|+..|.++++++|+++..+.+.+.++...+++..|+.-+.+|++.+|....+++..|.+...++.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34556667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158 142 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180 (227)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (227)
+.+|...|+....+.|+ ++.+...+-.|...+.+.
T Consensus 88 ---~~~A~~~l~~~~~l~Pn-d~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 88 ---FKKALLDLEKVKKLAPN-DPDATRKIDECNKIVSEE 122 (476)
T ss_pred ---HHHHHHHHHHhhhcCcC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 888888888888777663
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=69.37 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCChHHHH
Q 027158 8 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 8 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
.+..-...++....+++......+..++..|++..|.+.+... +...|. ...+|+++|-++++.|.+.-+.
T Consensus 224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~ 303 (696)
T KOG2471|consen 224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS 303 (696)
T ss_pred HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence 3444444555555678888999999999999999999877554 333343 2356789999999999999999
Q ss_pred HHHHHHHHH---------c---------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 79 EWLNKYLET---------F---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 79 ~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
.+|.++++- . .......++.|..|...|++-.|.+||.+++...-.+|..|.++|.+.....
T Consensus 304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999961 1 1224688999999999999999999999999999999999999999886543
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=8.9e-07 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
.+|+.+|.++...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555666666666666666666666665554
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.36 E-value=0.00017 Score=57.17 Aligned_cols=156 Identities=15% Similarity=0.012 Sum_probs=113.3
Q ss_pred CCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHc--
Q 027158 2 DCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVLHKRRVAIAKAQ-- 71 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~~~~l~~~~~~~-- 71 (227)
|..+|+.-+.+.+.+... .++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|...
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL 232 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 446777777777777665 45677888889999988 8999999999999 4555778889999999887652
Q ss_pred -------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH--------hh----CCCCHHHHHHH
Q 027158 72 -------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI--------LS----QPTVPLYHLAY 132 (227)
Q Consensus 72 -------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~----~p~~~~~~~~l 132 (227)
...++|+.+|.++.+++|+ ...-.+++.++...|.-.....-.++.. +. .-++......+
T Consensus 233 ~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl 311 (374)
T PF13281_consen 233 ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATL 311 (374)
T ss_pred HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 2478999999999999964 3444566667766665322221111111 11 12345566778
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 133 ADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+.+..-.|+ +++|...+++++.+.|.
T Consensus 312 ~Ea~vL~~d---~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 312 LEASVLAGD---YEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence 888888999 99999999999999885
No 220
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.34 E-value=1.8e-06 Score=43.77 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 93 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
.+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.32 E-value=7.8e-07 Score=45.08 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 027158 114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 149 (227)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~ 149 (227)
+|+++++++|+++.+++++|.++...|+ +++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence 4789999999999999999999999999 99886
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.6e-06 Score=63.68 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
-+..-|+-|+..++|..|+..|.+.++..-.+ ...|.+++.+....|++..|+..+.+++.++|.+..+++.-|.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34456777788888888888888888764333 35677788888888888888888888888888888888888888
Q ss_pred HHHcccHHHHHHHHHHHHhhCCC
Q 027158 102 YVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 102 ~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
++....+..|..+++..+.++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH
Confidence 88888888888888777665543
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.30 E-value=2.4e-05 Score=64.53 Aligned_cols=118 Identities=18% Similarity=0.117 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKRRVAIAKAQGNFPTAIE 79 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~ 79 (227)
...+.|..++......+|+..-..+..|.++...|+.++|++.+++++..... ....++.++.++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 45678999999999999999999999999999999999999999998863322 23567899999999999999999
Q ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHcccH-------HHHHHHHHHHHhh
Q 027158 80 WLNKYLETFMADHD-AWRELAEIYVSLQMY-------KQAAFCYEELILS 121 (227)
Q Consensus 80 ~~~~~l~~~p~~~~-~~~~la~~~~~~~~~-------~~A~~~~~~al~~ 121 (227)
+|.+..+.+.-+.. ..+..|-++...|+. ++|..+|.++-..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999987655433 445668888889988 8888888877643
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=6.6e-05 Score=57.79 Aligned_cols=147 Identities=18% Similarity=0.034 Sum_probs=118.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCCC---HHHHHHHHHHHHHc
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMAD---HDAWRELAEIYVSL 105 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~ 105 (227)
.+.+.+..|++-+|-..+++.+...|.+.-++..--..++..|+.......+++.+.. +|+- ......++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3456667799999999999999999999999988888999999999999999998876 5544 45566788888999
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCc---hhHHHhHHHHHHHHHh
Q 027158 106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN---TKALFGICLCSSAIAQ 179 (227)
Q Consensus 106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 179 (227)
|-|++|.+..+++++++|.+..+...++.++...|+ +.++.+...+.-+.-.... ...++..++++..-..
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence 999999999999999999999999999999999999 9999988776544322111 2334455555554443
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.26 E-value=9.2e-05 Score=51.23 Aligned_cols=112 Identities=17% Similarity=0.010 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 109 (227)
|......++...++..+.+++.+.....-.-... ..+- .....++. ....+...++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------~~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------LYLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCHH
Confidence 4455667888888899999888754331100000 1111 11112221 12356677777888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 110 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.|+..+++++..+|.+..++..+..++...|+ ...|+..|++....
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888 88888887777543
No 226
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.22 E-value=0.00048 Score=57.42 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=127.0
Q ss_pred CCCChHHHHHHHHHHHHhC-C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------CHH
Q 027158 2 DCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------------------DPV 59 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------------~~~ 59 (227)
+.|+.+.|..+|+++.... | +-..+|..-|..-+...+++.|..+.+++...... +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 3578899999999998753 3 23567888888888889999999999999875211 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHH---
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYAD--- 134 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~--- 134 (227)
+|..++...-..|-++.....|++.+++---.|..-.+.|..+....-+++|...|++.+.+.| .-...|..+-.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 6778888888899999999999999999999999999999999999999999999999998864 33444433322
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCCCchh
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGGKNTK 165 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~ 165 (227)
.-+..-. .+.|...|+++++..|+...+
T Consensus 559 ~rygg~k---lEraRdLFEqaL~~Cpp~~aK 586 (835)
T KOG2047|consen 559 KRYGGTK---LERARDLFEQALDGCPPEHAK 586 (835)
T ss_pred HHhcCCC---HHHHHHHHHHHHhcCCHHHHH
Confidence 2222234 899999999999999863333
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00052 Score=50.67 Aligned_cols=205 Identities=10% Similarity=-0.016 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHh-CCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChH
Q 027158 6 LDVAKDCIKVLQKQ-FPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFP 75 (227)
Q Consensus 6 ~~~A~~~~~~~~~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~ 75 (227)
..++.+..-..... .|+. ...+..-+.+|...+++++|...+.++.+-..++. .++...+.+......+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555554444442 3432 33455567788888999999999999997654442 44556667777888999
Q ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCc
Q 027158 76 TAIEWLNKYLETF-----MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDN 144 (227)
Q Consensus 76 ~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 144 (227)
++..+++++..+. |+.+..-...+--.....+++.|+.+|++++.+-..+ ...+...+.++.+...
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k--- 165 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK--- 165 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH---
Confidence 9999999998874 4444445555556677889999999999999765433 2345666777888888
Q ss_pred HHHHHHHHHHHhhhc----CC-CchhHHHhHHHHHHHHHhhhcCCCccccc------hHHHHHHHHHHHHHHHHhhCChh
Q 027158 145 ILLAKKYYASTIDLT----GG-KNTKALFGICLCSSAIAQLTKGRNKEDKE------SPELQSLAAAALEKDYKQRAPAK 213 (227)
Q Consensus 145 ~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~ 213 (227)
+.+|-..+.+-.... .- ..-+...+.++++....++..+..-.++. ...-...+.++|+..|.+..++.
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~ 245 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEE 245 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHH
Confidence 998888777654331 11 24456777778877766654332222221 11223346778888888776654
No 228
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.1e-05 Score=57.77 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLD----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
.++...|+-++..|+|.+|...|+.++.. .|.+ ...+.+++.|+...|++-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46677899999999999999999998754 4544 35678899999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 87 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
.+|.+..+++..|.+....=+..+|..-|.+++.++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999975443
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.20 E-value=0.00043 Score=54.47 Aligned_cols=155 Identities=14% Similarity=-0.027 Sum_probs=103.0
Q ss_pred CCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
-|+++.|.+-|+.++. +|.. .--+..+-......|+.+.|..+-.++....|.-+.++...-...+..|+++.|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 3677777777777654 2321 1111112223345578888888888888888888777777777778888888888888
Q ss_pred HHHHHHc---CCCH---HHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 82 NKYLETF---MADH---DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 82 ~~~l~~~---p~~~---~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
+...... ++-. .+-...+..... .-+...|...-.+++++.|+-..+-..-+..++..|+ ..++-..++.
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~---~rKg~~ilE~ 288 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN---LRKGSKILET 288 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc---hhhhhhHHHH
Confidence 7755432 2211 122222222211 2456777777778888888887787888888999999 9999999999
Q ss_pred HhhhcCC
Q 027158 155 TIDLTGG 161 (227)
Q Consensus 155 ~~~~~~~ 161 (227)
+++..|.
T Consensus 289 aWK~ePH 295 (531)
T COG3898 289 AWKAEPH 295 (531)
T ss_pred HHhcCCC
Confidence 9998885
No 230
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.17 E-value=4.9e-06 Score=42.15 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.15 E-value=0.00018 Score=49.77 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhh
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 180 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (227)
...++..+...|+ +++|+..+.+++..+|. +...+..+..++...++.
T Consensus 65 ~~~l~~~~~~~~~---~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 65 LERLAEALLEAGD---YEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCH
Confidence 3344455555555 55555555555555552 455555555555554443
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00048 Score=52.21 Aligned_cols=148 Identities=15% Similarity=0.039 Sum_probs=111.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
..|++.+|...|..++...|++..+...++.++...|+.+.|...+...=....... .........+.+.....+ ...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHH
Confidence 568999999999999999999999999999999999999999887766433322221 111122344444444444 345
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
+++.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+- .+..+...+-.++...|. -+.+...|+
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~~R 296 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLAYR 296 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence 6667788999999999999999999999999999988887754 556778888888888885 333444443
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.14 E-value=9.5e-06 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.123 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
.+++.+|.++...|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555556666666666666666666655554
No 234
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.13 E-value=0.00079 Score=53.01 Aligned_cols=146 Identities=11% Similarity=0.003 Sum_probs=115.8
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 027158 11 DCIKVLQKQFPESKRVGRLEGILLEAKGL------------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 78 (227)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 78 (227)
..+++.+..+|.+...|..+.......-. .+.-+.+|++|++.+|++...+..+..+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788889999999999888765544422 456678999999999999999999999888999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHH
Q 027158 79 EWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLY 137 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~ 137 (227)
.-+++++..+|++...|...-..... .-.+......|.+++..-. . -..++.+++....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877666554 2346677777777774211 0 0235777788888
Q ss_pred HcCCCCcHHHHHHHHHHHhhhc
Q 027158 138 TLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 138 ~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
..|. .+.|+..++-.++.+
T Consensus 166 ~aG~---~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGY---TERAVALWQALLEFN 184 (321)
T ss_pred HCCc---hHHHHHHHHHHHHHH
Confidence 8999 999999999999985
No 235
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=3.5e-05 Score=61.93 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHcCC--------CHHHHHHH
Q 027158 28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWREL 98 (227)
Q Consensus 28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~l 98 (227)
......+.+..+...+..-.+-++....+++.+....+..++..|++.+|.+.+... +...|. ..-+|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 344456677777888888888888888888899999999999999999999987753 333333 23468999
Q ss_pred HHHHHHcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 99 AEIYVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 99 a~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
|-+++..|.|.-+..+|.+|++ . .| ......++.|..|...|+ .-.|...|.++++...
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFH 366 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHh
Confidence 9999999999999999999995 1 11 234689999999999999 9999999999999988
Q ss_pred CCchhHHHhHHHHHHHHH
Q 027158 161 GKNTKALFGICLCSSAIA 178 (227)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~ 178 (227)
. +++.|..++-|+.--.
T Consensus 367 ~-nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 367 R-NPRLWLRLAECCIMAL 383 (696)
T ss_pred c-CcHHHHHHHHHHHHHh
Confidence 4 9999999999887543
No 236
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.3e-05 Score=57.01 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
.-+..-|+-|+...+|..|+.+|.+++...-.+ ...|.+.|-+....|+|..|+.-+.+++.++|.+..++++=|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 446677888899999999999999999986555 4578899999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
|++.+.. +..|....+..+.++..
T Consensus 162 c~~eLe~---~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELER---FAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHH---HHHHHHHHhhhhhhhHH
Confidence 9999999 99999999999887653
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.09 E-value=0.00028 Score=54.98 Aligned_cols=158 Identities=14% Similarity=0.001 Sum_probs=114.8
Q ss_pred CCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC------HHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD------PVLHKRRVA 66 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~------~~~~~~l~~ 66 (227)
++.++++++.|+.++....+ ...+...+|..+-...++++|..+..++.++-. ++ ..+++.++.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 46788999999999886432 235678899999999999999999999988622 22 245678888
Q ss_pred HHHHcCChHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHH
Q 027158 67 IAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYAD 134 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 134 (227)
.+..+|+.-.|.++.+++.++. |-.+.....+|++|...|+.+.|..-|+.|+..... ...++...|.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Ak 294 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAK 294 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999998864 223557788999999999999999999999865432 1234455555
Q ss_pred HHHHcCC--CCcHHHHHHHHHHHhhhcC
Q 027158 135 VLYTLGG--VDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 135 ~~~~~g~--~~~~~~A~~~~~~~~~~~~ 160 (227)
++....- ..---.|++.-++++++..
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 5443332 0001236666666666643
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.02 E-value=0.0014 Score=53.21 Aligned_cols=126 Identities=18% Similarity=-0.012 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-----------------
Q 027158 28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----------------- 90 (227)
Q Consensus 28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~----------------- 90 (227)
..+..-..+..+...-++.-+++++++|+-+.+|..++.-. .....+|..+|+++++....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 34445556778899999999999999999999998777632 22357788888887764211
Q ss_pred ----C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 91 ----D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 91 ----~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
+ ..+-..+|.+..+.|+.++|++.++..++..|. +..++.++..++..++. +.++...+.+.-+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~---Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA---YADVQALLAKYDDI 324 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC---HHHHHHHHHHhccc
Confidence 0 224568999999999999999999999988775 46689999999999999 99999988886544
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0013 Score=48.70 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHc
Q 027158 3 CQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQ 71 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~ 71 (227)
.++|++|..++.++.+-+.++ ...+-..+........+.++..+++++... .|+....-...+.-....
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len 123 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN 123 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Confidence 357888888888888654432 234455666777789999999999999887 344444444555556677
Q ss_pred CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh----hCCCCHH--HHHHHHHHHHHc
Q 027158 72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQPTVPL--YHLAYADVLYTL 139 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~--~~~~la~~~~~~ 139 (227)
-++++|+++|++++.+...+ .+.+...+.++.+...|.+|-..+.+-.. .+..+.. .+.....++...
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 88999999999999876554 34566778889999999998877766542 2322333 333333445555
Q ss_pred CCCCcHHHHHHHHHHHhhhcCC---CchhHHHhHHHHHH
Q 027158 140 GGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSS 175 (227)
Q Consensus 140 g~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 175 (227)
.+ +..|...|+...++..- .+.+...++...+.
T Consensus 204 ~D---yv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 204 HD---YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred HH---HHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 68 99999999987775321 24555555554443
No 240
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.01 E-value=2.7e-06 Score=65.13 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 110 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~ 110 (227)
+.-.+..|+++.|++.|..++.++|....++...+.++..+++...|+..+..++.++|+.+.-+-..|.....+|+|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44556678888888888888888888888888888888888888888988988888888888888888888888888888
Q ss_pred HHHHHHHHHhhC
Q 027158 111 AAFCYEELILSQ 122 (227)
Q Consensus 111 A~~~~~~al~~~ 122 (227)
|...+..+.+++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 888888888765
No 241
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00019 Score=57.92 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 027158 42 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL 120 (227)
Q Consensus 42 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~ 120 (227)
.-...|++++...+.++..|..........+.+.+--..|.+++..+|++++.|..-|...+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345677888888888888888888777777778888888888888888888888888888777665 8888888888888
Q ss_pred hCCCCHHHHHHH
Q 027158 121 SQPTVPLYHLAY 132 (227)
Q Consensus 121 ~~p~~~~~~~~l 132 (227)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 888887765443
No 242
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0031 Score=51.11 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=123.2
Q ss_pred CCChHHHHHHHHHHHHhC---CC-------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH--HHHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQF---PE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP--VLHKRRVAIAK 69 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~---p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~--~~~~~l~~~~~ 69 (227)
.|++.+|+..+..+.+.. |. .+.++..+|......+-++.|...|..+++.... +. .+-.+++..|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 588999998888887754 43 3456788898888999999999999999987432 32 34467888999
Q ss_pred HcCChHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 027158 70 AQGNFPTAIEWLNKYLETFMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA 133 (227)
Q Consensus 70 ~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 133 (227)
+.|+.+.--+.++. +.|.+ ..+++..|...+.++++.+|...+.+.++..... ...+..++
T Consensus 416 ~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 416 RIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 98876554444433 44543 3467788999999999999999999999876211 23577888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhHHHHHHHHHh
Q 027158 134 DVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIAQ 179 (227)
Q Consensus 134 ~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 179 (227)
.+....|+ ..++.+..+-++++... ++.....--...+..+.+
T Consensus 493 ~v~lslgn---~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 493 HVFLSLGN---TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQ 536 (629)
T ss_pred HHHHHhcc---hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999999 99999999888877544 333333322333444444
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.0027 Score=45.39 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
-..++..+...|++++|+..++.++....+. +-+-.+||.+...+|.+++|+..+...... .-.+......|+++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence 3456777888999999999999998543332 346779999999999999999887664321 112344677899999
Q ss_pred HcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 138 TLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 138 ~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
..|+ -++|+..|.+++...++
T Consensus 171 ~kg~---k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGD---KQEARAAYEKALESDAS 191 (207)
T ss_pred HcCc---hHHHHHHHHHHHHccCC
Confidence 9999 99999999999999764
No 244
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.90 E-value=2.9e-05 Score=39.17 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 245
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.87 E-value=0.0019 Score=51.56 Aligned_cols=144 Identities=15% Similarity=0.038 Sum_probs=111.3
Q ss_pred HHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCCH---HHHHHHH
Q 027158 15 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------------------------NPLDP---VLHKRRV 65 (227)
Q Consensus 15 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------------------------~p~~~---~~~~~l~ 65 (227)
.++..+|-+...+..++.++..+|+...|.+++++++-. .+.|. .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 445678899999999999999999999999998888543 11222 3345566
Q ss_pred HHHHHcCChHHHHHHHHHHHHHcCC-CHHHHH-HHHHHHHHcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHH
Q 027158 66 AIAKAQGNFPTAIEWLNKYLETFMA-DHDAWR-ELAEIYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYT 138 (227)
Q Consensus 66 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~ 138 (227)
..+.+.|-+..|.++.+-.+.++|. ||-... .+-....+.++|+--+..++....... .-|..-+..|.+++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 6778899999999999999999999 765444 444445677899988888887665221 134567788888888
Q ss_pred cCCCCcH---------------HHHHHHHHHHhhhcCC
Q 027158 139 LGGVDNI---------------LLAKKYYASTIDLTGG 161 (227)
Q Consensus 139 ~g~~~~~---------------~~A~~~~~~~~~~~~~ 161 (227)
.++ - +.|...+.+++..-|.
T Consensus 191 l~~---~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 191 LEK---EESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hcC---ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 888 5 8999999999999884
No 246
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.86 E-value=1.4e-05 Score=61.27 Aligned_cols=89 Identities=15% Similarity=-0.053 Sum_probs=84.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
..|.+++|++.+..++.++|.....+.-.+.++...+++..|+.-|..++.++|+....|...+.....+|++.+|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 027158 82 NKYLETFMA 90 (227)
Q Consensus 82 ~~~l~~~p~ 90 (227)
..+++++-+
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 999998744
No 247
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0098 Score=51.49 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=111.3
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------NPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
.++..|..-|......|+.+.|+.+|..+-.. ...+..+.+.+|..|...|++.+|+.+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34556666788888999999999999888443 345667788999999999999999999
Q ss_pred HHHHHHH------cCCC---HHH-----------HHHHHHHHHHcc-cHHHHHHHHHHHH--------------------
Q 027158 81 LNKYLET------FMAD---HDA-----------WRELAEIYVSLQ-MYKQAAFCYEELI-------------------- 119 (227)
Q Consensus 81 ~~~~l~~------~p~~---~~~-----------~~~la~~~~~~~-~~~~A~~~~~~al-------------------- 119 (227)
|.++-.. ..++ ... ....|..|...| .+..|+.+|.+|-
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 9886432 1111 011 111222233333 4444444443321
Q ss_pred ---hhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH------HhhhcCCCchhHHHhHHHHHHHHHhhhcCCCcccc
Q 027158 120 ---LSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYAS------TIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDK 189 (227)
Q Consensus 120 ---~~~p-~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 189 (227)
.++| .+|..+.+-+..+....+ |++|...+-. ++++..+.+.+ +-..+.+.....++...
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~~ar~~~~AlqlC~~~nv~-------vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLCLAREFSGALQLCKNRNVR-------VTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHhcCcCcCCCc
Confidence 1234 457777777888888888 8888776544 44443322221 22333333333332211
Q ss_pred c---h----HHHHHHHHH-----HHHHHHHhhCChhhhHHHHHHhhccCC
Q 027158 190 E---S----PELQSLAAA-----ALEKDYKQRAPAKLLLLTSALKSLKTS 227 (227)
Q Consensus 190 ~---~----~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
. - ..+.+...+ .-.+.|. +..+|++.+.+.||+..|+
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT-QAGdKl~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFT-QAGDKLSAMRALLKSGDTQ 1188 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHh-hhhhHHHHHHHHHhcCCcc
Confidence 1 1 111111111 1223333 3458999999999998874
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.85 E-value=9.2e-05 Score=60.89 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=43.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 36 AKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 36 ~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
..|+.-.|+.++..++...|... ....+++.+....|-...|..++.+++.+....|-.++.+|..+....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 33444444444444444444322 22334444444444444444444444444444444444444444444445555555
Q ss_pred HHHHHhhCCCCHHH
Q 027158 115 YEELILSQPTVPLY 128 (227)
Q Consensus 115 ~~~al~~~p~~~~~ 128 (227)
|+.|+..+|+++..
T Consensus 699 ~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 699 FRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHhcCCCChhh
Confidence 55555444444443
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.84 E-value=0.0027 Score=50.54 Aligned_cols=140 Identities=21% Similarity=0.140 Sum_probs=106.6
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCC------
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMA------ 90 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~------ 90 (227)
.....+...+.+....|.++.|...+.++...++ ..+.+....+.++...|+..+|+..++..+.. ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4556778888899999999999999999888652 25677788899999999999999999888871 110
Q ss_pred --------------------C-------HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 91 --------------------D-------HDAWRELAEIYVSL------QMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 91 --------------------~-------~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
. +.++..+|...... +..++++..|..++..+|+...+|..+|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0 33566777777777 88888999999999999999889888888776
Q ss_pred HcCCC--------------CcHHHHHHHHHHHhhhcCC
Q 027158 138 TLGGV--------------DNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 138 ~~g~~--------------~~~~~A~~~~~~~~~~~~~ 161 (227)
..-.. .-...|+..|-+++..++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54320 0124577788888887774
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.83 E-value=0.0024 Score=44.36 Aligned_cols=99 Identities=15% Similarity=0.014 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 138 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 138 (227)
..+..+..+-...++.+++...+....-+.|..+..-..-|.+++..|+|.+|+..++.+....|..+.+.-.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44555666666778888888888888888899988888889999999999999999999888888888888888888888
Q ss_pred cCCCCcHHHHHHHHHHHhhhcCC
Q 027158 139 LGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 139 ~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+|+ .. =..+-.++++..++
T Consensus 91 ~~D---~~-Wr~~A~evle~~~d 109 (160)
T PF09613_consen 91 LGD---PS-WRRYADEVLESGAD 109 (160)
T ss_pred cCC---hH-HHHHHHHHHhcCCC
Confidence 887 22 22233445665554
No 251
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.82 E-value=0.0086 Score=46.47 Aligned_cols=149 Identities=13% Similarity=-0.020 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHH
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPT 76 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~ 76 (227)
.+..|...+..+.... ++.....++.++... .+..+|..+|..+. ....+.+.+.+|.++.. ..+..+
T Consensus 56 ~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 56 DYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred cHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 3444444444444311 123344444444433 34445555555222 23344444455555444 224555
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHHH
Q 027158 77 AIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNILL 147 (227)
Q Consensus 77 A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~ 147 (227)
|..+|+++.+..... ..+...+|.+|..-. +...|..+|.++-... ++.+...+|.+|..- |-..++.+
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHH
Confidence 555555554443222 122444444444321 1224555555544433 444445555444332 21223555
Q ss_pred HHHHHHHHhhhc
Q 027158 148 AKKYYASTIDLT 159 (227)
Q Consensus 148 A~~~~~~~~~~~ 159 (227)
|...|.++.+..
T Consensus 210 A~~wy~~Aa~~g 221 (292)
T COG0790 210 AFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHCC
Confidence 555555555543
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.0082 Score=47.55 Aligned_cols=149 Identities=15% Similarity=0.005 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHH----------------------------------
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSS---------------------------------- 49 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~---------------------------------- 49 (227)
|..+-|..+...+..+-|.-+-+....-...+..|+|+.|+++.+.
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 4455555555555555555555544444455555555555555544
Q ss_pred -------HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHH---HHHH
Q 027158 50 -------LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY---EELI 119 (227)
Q Consensus 50 -------~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---~~al 119 (227)
++++.|+...+-..-+..++..|+..++-.+++.+.+.+|+ +.++ +..++.+.|+ .++.-+ .+..
T Consensus 248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 248 ARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 44444444444444445555555555555555555555543 2211 1111222222 222222 2222
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 120 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 120 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.+.|++.......+..-+..|+ +..|..--+.+....|
T Consensus 323 slk~nnaes~~~va~aAlda~e---~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGE---FSAARAKAEAAAREAP 360 (531)
T ss_pred hcCccchHHHHHHHHHHHhccc---hHHHHHHHHHHhhhCc
Confidence 3445555566666666666666 6666666666666666
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0016 Score=48.63 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TAIEWLNK 83 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~ 83 (227)
-..|+.+...++..+|.+-.+|...-.++... .+..+-++++.+++..+|.+..+|..+-.+....|++. .-+++.+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 34566666666667776666766666666555 46778889999999999999999999999888899888 78999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCC--CcHHHHHHHHHHHhhhcC
Q 027158 84 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGV--DNILLAKKYYASTIDLTG 160 (227)
Q Consensus 84 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~--~~~~~A~~~~~~~~~~~~ 160 (227)
++..+..+-.+|...-.+...-+.|+.-+.+..+.++.+-.|-.+|...-.+... .|-. ...+.-+.+..+.+...|
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP 218 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVP 218 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999887776666554332222 2221 114455667788888888
Q ss_pred CCchhHHHhHHHHH
Q 027158 161 GKNTKALFGICLCS 174 (227)
Q Consensus 161 ~~~~~~~~~l~~~~ 174 (227)
+ +..+|.-+.-..
T Consensus 219 ~-NeSaWnYL~G~l 231 (318)
T KOG0530|consen 219 N-NESAWNYLKGLL 231 (318)
T ss_pred C-CccHHHHHHHHH
Confidence 5 666665444333
No 254
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.71 E-value=0.00013 Score=36.73 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p 89 (227)
.+|..+|.++...|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456666666666666666666666666666
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0011 Score=53.74 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 027158 8 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLE 86 (227)
Q Consensus 8 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~ 86 (227)
+-..+|+.+..+++.++..|..........+.+.+-...|.+++..+|+++++|..-+...+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 346789999999999999999988888888889999999999999999999999988887777665 9999999999999
Q ss_pred HcCCCHHHHHHH
Q 027158 87 TFMADHDAWREL 98 (227)
Q Consensus 87 ~~p~~~~~~~~l 98 (227)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999988643
No 256
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.0024 Score=45.65 Aligned_cols=116 Identities=11% Similarity=-0.012 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 9 AKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 9 A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
......+....+|.+.. ....++..+...+++++|...++.++....+. ..+-..++.+...+|.+++|+..+.
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 33444455555544332 23556788889999999999999999754433 2456789999999999999999988
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
..-.-. -.+......|+++...|+-.+|...|++++...+..
T Consensus 151 t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 151 TIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 643211 123345678999999999999999999999987544
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.0079 Score=48.47 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=97.1
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHH---------cC---CCHH
Q 027158 29 LEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE--WLNKYLET---------FM---ADHD 93 (227)
Q Consensus 29 ~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~l~~---------~p---~~~~ 93 (227)
.-|.-++..|. -++|+..++.++.-.|.+...-+..-. +.+ ..|.+|+. .+-+.+.+ .| .+.+
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~-fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL-FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH-HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 34556666676 789999999999988888754322211 111 11222211 12222221 12 1233
Q ss_pred HHHHH--HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC-CchhHHHhH
Q 027158 94 AWREL--AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGI 170 (227)
Q Consensus 94 ~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 170 (227)
.-..| |..++.+|+|.++..+..-..++.| ++.++..+|.+++...+ |.+|..++...-- +.+ .+....-++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~LP~-n~~~~dskvqKAl 536 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQKLPP-NERMRDSKVQKAL 536 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHhCCC-chhhHHHHHHHHH
Confidence 44444 4457789999999999999999999 89999999999999999 9999999975433 221 567778889
Q ss_pred HHHHHHHHh
Q 027158 171 CLCSSAIAQ 179 (227)
Q Consensus 171 ~~~~~~~~~ 179 (227)
++|+..+.+
T Consensus 537 ~lCqKh~~k 545 (549)
T PF07079_consen 537 ALCQKHLPK 545 (549)
T ss_pred HHHHHhhhh
Confidence 999888764
No 258
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.63 E-value=0.00018 Score=35.84 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444455555554444444443
No 259
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.63 E-value=0.0014 Score=42.38 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHcCCCHHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGN-----------FPTAIEWLNKYLETFMADHDAWR 96 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~~ 96 (227)
+.-++..|++-+|+++.+..+..++++.. .+..-|.++..+.. .-.++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 44556667777777777777766665543 23333333332210 12344444444444444444444
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Q 027158 97 ELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
.+|.-+-...-|++++.-.++++.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 444444444444444444444443
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.62 E-value=0.00013 Score=37.42 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
|.+||.+|...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 261
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.003 Score=54.50 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=87.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HHHcCC--------
Q 027158 29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY----------LETFMA-------- 90 (227)
Q Consensus 29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~p~-------- 90 (227)
++-..|...|.|++|.+..+.-=+++ -...|++.+..+...++.+.|+++|+++ +.-+|.
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 34455556666666665543221111 2356788888888899999999999883 223332
Q ss_pred --CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158 91 --DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---------------------PTVPLYHLAYADVLYTLGGVDNILL 147 (227)
Q Consensus 91 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~~~~ 147 (227)
++..|..-|......|+.+.|+.+|..|-... ..+..+.+.+|.-|...|+ +.+
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~ 985 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD---VVK 985 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH---HHH
Confidence 35567777888888999999999999876421 2345578889999999999 999
Q ss_pred HHHHHHHHhhh
Q 027158 148 AKKYYASTIDL 158 (227)
Q Consensus 148 A~~~~~~~~~~ 158 (227)
|+..|.++-..
T Consensus 986 Av~FfTrAqaf 996 (1416)
T KOG3617|consen 986 AVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 262
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.59 E-value=0.00029 Score=58.13 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=88.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 027158 64 RVAIAKAQGNFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 142 (227)
Q Consensus 64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 142 (227)
-|......|+...|+.++..++-..|... ....+||++....|....|-.++.+++.+....|..++.+|..+..+.+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~- 691 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN- 691 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh-
Confidence 34445568999999999999999888754 4678999999999999999999999999998889999999999999999
Q ss_pred CcHHHHHHHHHHHhhhcCCCchhHHH
Q 027158 143 DNILLAKKYYASTIDLTGGKNTKALF 168 (227)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~ 168 (227)
.+.|+++|+++++++|+ ++....
T Consensus 692 --i~~a~~~~~~a~~~~~~-~~~~~~ 714 (886)
T KOG4507|consen 692 --ISGALEAFRQALKLTTK-CPECEN 714 (886)
T ss_pred --hHHHHHHHHHHHhcCCC-ChhhHH
Confidence 99999999999999996 654443
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.58 E-value=0.0013 Score=45.57 Aligned_cols=85 Identities=18% Similarity=-0.083 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 105 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 105 (227)
.++....+-...++.+++...+..+--+.|..+.+-..-|.+++..|++.+|+..|+.+....|..+.+--.++.|+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34455556666678888888888777788888888888888888888888888888888777787787777788888888
Q ss_pred ccHHH
Q 027158 106 QMYKQ 110 (227)
Q Consensus 106 ~~~~~ 110 (227)
|+...
T Consensus 92 ~D~~W 96 (160)
T PF09613_consen 92 GDPSW 96 (160)
T ss_pred CChHH
Confidence 77654
No 264
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.0085 Score=47.23 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158 45 KAYSSLLEDNPLDPVLHKRRVAIAKAQGN------------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 112 (227)
Q Consensus 45 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 112 (227)
.-+++.++.+|.+..+|..++...-..-. .+.-+.+|++|++.+|++...+..+-.+.......++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999999876554322 467788999999999999999999989999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 113 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.-+++++..+|+++..|..+-......-..-.+......|.++++.-
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999888776554443211112677777777777653
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.53 E-value=0.0021 Score=40.41 Aligned_cols=64 Identities=23% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 027158 78 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG 141 (227)
Q Consensus 78 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 141 (227)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++.. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 556677777777777777777777777777777777777777776644 4455555555555554
No 266
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.012 Score=44.12 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH-HHHHHHH
Q 027158 39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK-QAAFCYE 116 (227)
Q Consensus 39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~ 116 (227)
.-..|+.+...++.++|.+..+|..+-.++...+ +..+-+.++.+.++-+|.+-..|...-.+....|++. .-+++.+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3345667778888999999999988888777654 6778899999999999999999999999999999888 8899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 117 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 117 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.++..+..+..+|...-.+...-+. ++.-+.+..+.++.+-
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~---~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKD---YEDELAYADELLEEDI 178 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhh---HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998 9988888888887654
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.53 E-value=0.0066 Score=48.31 Aligned_cols=118 Identities=15% Similarity=0.030 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHHcCCCHHH
Q 027158 23 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKA---QGNFPTAIEWLNK-YLETFMADHDA 94 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~ 94 (227)
++.+...+-..|....+|+.=+.+.+..-.. .++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4455566666788889999888888877665 45667778888888888 8999999999999 55566778999
Q ss_pred HHHHHHHHHHc---------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 95 WRELAEIYVSL---------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 95 ~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
++.+|.+|-.. ...++|+.+|.++...+|+... =.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCC
Confidence 99999998654 3578999999999999975433 3556666777775
No 268
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.53 E-value=0.00023 Score=35.41 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
+++.+|.++...|++++|+..|++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 269
>PRK10941 hypothetical protein; Provisional
Probab=97.53 E-value=0.0022 Score=48.93 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
...++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|. +..|...++..++..|+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence 455667777788888888888888888888888888888888888888 88888888888888875
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.48 E-value=0.015 Score=49.38 Aligned_cols=149 Identities=18% Similarity=0.011 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQG--- 72 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~--- 72 (227)
...|...++.+.+.. +......+|.++..- .+.+.|+.+++.+.+. .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 346677777766543 556667777777655 6899999999999771 1125567788999998854
Q ss_pred --ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCcHH
Q 027158 73 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNIL 146 (227)
Q Consensus 73 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~ 146 (227)
+...|..+|.++-... ++++.+.+|.++..-. ++..|..+|..|... .+..+.+.+|.+|..- |-..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 5677999999887654 6788889999988765 678999999998764 4678888898887654 2233489
Q ss_pred HHHHHHHHHhhhcC
Q 027158 147 LAKKYYASTIDLTG 160 (227)
Q Consensus 147 ~A~~~~~~~~~~~~ 160 (227)
.|..+|.++.+.++
T Consensus 382 ~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHccC
Confidence 99999999999874
No 271
>PRK10941 hypothetical protein; Provisional
Probab=97.48 E-value=0.0026 Score=48.53 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 135 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (227)
..++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.....+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345566777778888888888888888888888888888888888888888888888888888777665444433
No 272
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.035 Score=46.27 Aligned_cols=140 Identities=16% Similarity=-0.021 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH-
Q 027158 38 GLWAEAEKAYSSLLEDNPLDPVLHKR--RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC- 114 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~- 114 (227)
+....++..+...+..+|.++..+.. +...+...+....+...+...+..+|.++.+..+|+......|..-.+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445777788888888888876433 466677788898999999999999999999999999998887766555554
Q ss_pred HHHHHhhCCCCHHHHHHH------HHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 115 YEELILSQPTVPLYHLAY------ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 115 ~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
.+.+....|.+..+...+ +.....+|+ ..++.....++.+..|. +++...++.....+..++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~-~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPK-YPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhh-hhhhHhHHHHHHHHhccch
Confidence 455888889887765555 888888888 99999999999999996 7888777777766555443
No 273
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.46 E-value=0.022 Score=47.00 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 027158 6 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
.+++..+|++.+.... .+...++.++..-...-+ ++.....+++++.....++ -+|..+...-.+..-.+.|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 5677788888877543 344444555544443333 6677788888887643332 4455666666666668888999
Q ss_pred HHHHHHHcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh-
Q 027158 81 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL- 158 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~- 158 (227)
|.++.+.--..-..+..-|.+ |...++..-|...|+-.++..++.+..-......+..+|+ -..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhcc
Confidence 999876544333455444444 5678999999999999999999999999999999999999 88999999999987
Q ss_pred -cCCCchhHHHhHHH
Q 027158 159 -TGGKNTKALFGICL 172 (227)
Q Consensus 159 -~~~~~~~~~~~l~~ 172 (227)
.|+...+.|-.+..
T Consensus 466 l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLE 480 (656)
T ss_pred CChhhhHHHHHHHHH
Confidence 44322334433333
No 274
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.45 E-value=0.005 Score=38.73 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+..++...|.-+....-++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 456677778888888888888888888888888888888888887654 4555556666666655443333333
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.41 E-value=0.037 Score=42.93 Aligned_cols=130 Identities=15% Similarity=-0.008 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------
Q 027158 5 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHKRRVAIAKAQG------- 72 (227)
Q Consensus 5 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~------- 72 (227)
+..+|...|+... ...++...+.+|..+.. ..+..+|..+|+++....-.. ..+...++.++..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 4677888888443 34567788888888887 458899999999999875443 344777887777642
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
+...|...|.++.... ++.+...+|.+|.. ..++.+|..+|.++-.... ...++.++ +++..|.
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 2337888888887766 78889999988865 3478999999999988776 78888888 6666664
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.38 E-value=0.00058 Score=34.88 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYL 85 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l 85 (227)
+..+|.++...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777777777777744
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.35 E-value=0.053 Score=43.47 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=92.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc--------------------------CCCHH---HHHHHH
Q 027158 49 SLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------------------------MADHD---AWRELA 99 (227)
Q Consensus 49 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------------------------p~~~~---~~~~la 99 (227)
..+..+|-+.+++..++.++..+|+...|.+++++++-.. +.|-. +.....
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3457799999999999999999999999999999986431 11111 445567
Q ss_pred HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHhhhcCC----CchhHHHhHHHH
Q 027158 100 EIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVL-YTLGGVDNILLAKKYYASTIDLTGG----KNTKALFGICLC 173 (227)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~ 173 (227)
..+.+.|-+..|.++++-.+.++|. ||......-+.| .+.++ ++--+..++........ .-+...++.+++
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~---y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ---YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC---HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 7778889999999999999999998 776544444444 45555 66666666654442111 123477888888
Q ss_pred HHHHHhh
Q 027158 174 SSAIAQL 180 (227)
Q Consensus 174 ~~~~~~~ 180 (227)
+..+++.
T Consensus 188 ~~~l~~~ 194 (360)
T PF04910_consen 188 YFRLEKE 194 (360)
T ss_pred HHHhcCc
Confidence 8888775
No 278
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.34 E-value=0.0013 Score=50.37 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 65 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 65 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
+.-....|+.++|...|+.++.+.|.+++++...|......++.-+|-.||-+|+.++|.+..++.+.+.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3344566777778888888888888888887777777777777777777888888777777776665554
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.33 E-value=0.0019 Score=36.06 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
.+.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444455555555555555555555544443
No 280
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.31 E-value=0.019 Score=47.31 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158 48 SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 48 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 121 (227)
++-++.+|.+..+|..+..-+..+ ..++....|++.+..+|..+.+|.......+...+|+.-..+|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556777888888888887766655 7888888888888888888888888888888888888888888887743
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.30 E-value=0.023 Score=38.94 Aligned_cols=81 Identities=16% Similarity=-0.030 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
+......-...++.+++...+....-+.|+.+..-..-|.+++..|+|.+|+..++......+..+...-.++.|++.+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444557888888888888888899999888888999999999999999999988888888888888889999888
Q ss_pred C
Q 027158 141 G 141 (227)
Q Consensus 141 ~ 141 (227)
+
T Consensus 93 D 93 (153)
T TIGR02561 93 D 93 (153)
T ss_pred C
Confidence 8
No 282
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.28 E-value=0.0033 Score=51.05 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=95.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWL 81 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 81 (227)
+.|+.-.|-.-+..++...|..|....+.+.+....|+|+.|...+.-+-..-.....+...+-......|++++|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45777777777888888888888888888889999999998888776665544444445556666677888888888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 82 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 82 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
.-.+.-.-++++...-.+......|-+++|..++++.+.++|..
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 87777666777777666777777888889999999988888754
No 283
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.27 E-value=0.00053 Score=52.36 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 47 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 47 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
|.++-...|+++.+|...+..-...|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444455578888999888888888888888899999999999999999987 5566778899999999999999999999
Q ss_pred HHHHHHHH
Q 027158 126 PLYHLAYA 133 (227)
Q Consensus 126 ~~~~~~la 133 (227)
|..|...-
T Consensus 176 p~iw~eyf 183 (435)
T COG5191 176 PRIWIEYF 183 (435)
T ss_pred chHHHHHH
Confidence 88765543
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.25 E-value=0.00068 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
+|..+|.++...|+++.|+.++++++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555544
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.06 Score=45.82 Aligned_cols=148 Identities=16% Similarity=0.034 Sum_probs=109.6
Q ss_pred CCChHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 027158 3 CQCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAKG-----LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 72 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 72 (227)
..+.+.|+.++..+... .-.++.+...+|.+|.... ++..|..+|.++-... ++.+.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 35788899999988771 1125667888999998853 7788999999998765 4566778888887665
Q ss_pred ---ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCc
Q 027158 73 ---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN 144 (227)
Q Consensus 73 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~ 144 (227)
+...|..+|..+... .+..+.+.+|.+|..- .+...|..++.++.... ++.+...++..+... +.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~--- 412 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR--- 412 (552)
T ss_pred ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc---
Confidence 578999999998764 5788999999998753 57899999999999887 555556666554433 55
Q ss_pred HHHHHHHHHHHhhhc
Q 027158 145 ILLAKKYYASTIDLT 159 (227)
Q Consensus 145 ~~~A~~~~~~~~~~~ 159 (227)
+..+...+.......
T Consensus 413 ~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 413 YDTALALYLYLAELG 427 (552)
T ss_pred ccHHHHHHHHHHHhh
Confidence 666665555554443
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.21 E-value=0.0045 Score=42.31 Aligned_cols=73 Identities=18% Similarity=-0.029 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158 37 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 37 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 109 (227)
.++.+++...+..+--+.|+.+.+-..-|.+++..|++.+|+..|+......+..+...-.++.|+...|+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4555555555555555555555555555555555555555555555555544444544455555555555543
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.18 E-value=0.013 Score=38.04 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHcc-----------cHHHHHHHHHHHHhhCCCCHHHH
Q 027158 64 RVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWRELAEIYVSLQ-----------MYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
++.-++..|+.-+|++..+..+...+++.. .+..-|.++..+. -.-.|+++|.++..+.|.....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 456788999999999999999999988764 4455677776553 23568999999999999987777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 130 LAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
+.+|.-+-.... |+++..-.++++..
T Consensus 82 ~~la~~l~s~~~---Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKY---YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHH---HHHHHHHHHHHhcc
Confidence 777765444444 67777777766655
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.10 E-value=0.13 Score=43.03 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=122.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEW 80 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~ 80 (227)
..|+++...-.+++.+-.-......|+..+......|+.+-|...+.++.+. .|..+.+...-+...-..|++..|...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 3577788888888887776777888888888888889999888888888775 567777777777888888999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHHHHH-cCCCCcHHHHHHHHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADVLYT-LGGVDNILLAKKYYA 153 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~~---~~~~~~la~~~~~-~g~~~~~~~A~~~~~ 153 (227)
+++....-|+...+-..-..+..+.|..+.+.. ++........+. .......+...+. .++ .+.|...+.
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d---~~~a~~~l~ 465 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED---ADLARIILL 465 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 999988888888888888888888888888874 333322221111 2344555554433 445 889999999
Q ss_pred HHhhhcCCCchhHHHhHH
Q 027158 154 STIDLTGGKNTKALFGIC 171 (227)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~ 171 (227)
++++..|+ +...+..+.
T Consensus 466 ~~~~~~~~-~k~~~~~~~ 482 (577)
T KOG1258|consen 466 EANDILPD-CKVLYLELI 482 (577)
T ss_pred HhhhcCCc-cHHHHHHHH
Confidence 99999985 655554443
No 289
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.12 Score=42.30 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHHHhCCC------chhh--------HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------CHH
Q 027158 4 QCLDVAKDCIKVLQKQFPE------SKRV--------GRLEGILLEAKGLWAEAEKAYSSLLED---NPL-------DPV 59 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~------~~~~--------~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~ 59 (227)
|-+++|.++-++++.+... ..++ +-.+..|-.-.|++.+|++....+... .|. .+.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 5567777777777765321 2222 233456667779999999988887765 444 346
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----------H
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----------P 126 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------~ 126 (227)
++..+|......+-++.|...|..+++.-... +-+..++|..|.+.|+-+.--+.++. +.|.+ .
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEA 445 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHH
Confidence 67788888888999999999999999875432 33556889999998876655444443 44542 2
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.+++..|...+..|+ +.+|....++.++...
T Consensus 446 ~~~~v~glfaf~qn~---lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 446 SILYVYGLFAFKQND---LNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 356777888888999 9999999999999864
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.05 E-value=0.0011 Score=50.64 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 13 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
|.+....+|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 345556788999999999998899999999999999999999999999976 3345677899999999999999999999
Q ss_pred HHHHHHH
Q 027158 92 HDAWREL 98 (227)
Q Consensus 92 ~~~~~~l 98 (227)
|..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 9988754
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.99 E-value=0.0098 Score=48.44 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=103.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
+..|+.-.|-.-...++...|.+|......+.++...|.|+.+...+..+-..-.....+..-+-.-.+..|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45689999999999999999999999889999999999999999988877665555555555555667788999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 115 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.+-.+.-.-.++++...-|.....+|- +++|..++++++.++|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh
Confidence 888887666777777767777777888 99999999999999986
No 292
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.98 E-value=0.0038 Score=47.88 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
+.-....|+.++|..+|.-++.+.|+++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+..
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33445669999999999999999999999999999998888999999999999999999999988766543
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.98 E-value=0.0099 Score=33.20 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 177 (227)
Q Consensus 127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (227)
..++.+|..++++|+ +.+|..+.+.+++..|+ +..+..-...+..++
T Consensus 2 d~lY~lAig~ykl~~---Y~~A~~~~~~lL~~eP~-N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE---YEKARRYCDALLEIEPD-NRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHH
Confidence 357889999999999 99999999999999996 766655444444443
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.93 E-value=0.0018 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM 89 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p 89 (227)
++..+|.++...|+++.|+..+++++..+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555555444
No 295
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.92 E-value=0.021 Score=51.65 Aligned_cols=147 Identities=15% Similarity=0.033 Sum_probs=113.8
Q ss_pred HHHHHHHHH-HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHH
Q 027158 9 AKDCIKVLQ-KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRRVAIAKAQGNFPTAIE 79 (227)
Q Consensus 9 A~~~~~~~~-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~ 79 (227)
++.++.... .+.|+....+..++.++...|++++|+..-.++.-. .|+....+.+++...+..++...|..
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence 333666444 346788899999999999999999999987777554 35566778888888888899999999
Q ss_pred HHHHHHHH--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCCC
Q 027158 80 WLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPLYHLAYADVLYTLGGVD 143 (227)
Q Consensus 80 ~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~ 143 (227)
.+.++..+ .|.-.....+++.++...++++.|+.+.+.|..... .....+..++..+..+++
T Consensus 1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~d-- 1114 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKD-- 1114 (1236)
T ss_pred hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHH--
Confidence 99998875 355566778999999999999999999999997542 223456777777777777
Q ss_pred cHHHHHHHHHHHhhh
Q 027158 144 NILLAKKYYASTIDL 158 (227)
Q Consensus 144 ~~~~A~~~~~~~~~~ 158 (227)
+..|..+.+....+
T Consensus 1115 -fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1115 -FRNALEHEKVTYGI 1128 (1236)
T ss_pred -HHHHHHHHhhHHHH
Confidence 77777776665544
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.0039 Score=51.11 Aligned_cols=97 Identities=24% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
-|.-.+..+.+..|+..|.+++...|.....+.+.+.+++.. |+.-.|+.....++.++|....+|+.|+.++...+
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 344444456788899999999999999999999999888764 67778888889999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCH
Q 027158 107 MYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~ 126 (227)
++.+|+++...+....|.+.
T Consensus 460 r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hHHHhhhhHHHHhhcCchhh
Confidence 99999999998888888543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.85 E-value=0.048 Score=39.03 Aligned_cols=96 Identities=5% Similarity=-0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHH----HH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPL----YH 129 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~----~~ 129 (227)
.++..+|..|.+.|+.+.|++.|.++.+..... .+.+..+..+.+..++|.....+..++-..... ++. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 444555555555555555555555554432221 234445555555555555555555555433221 111 12
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 130 LAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 130 ~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
..-|..+...|+ |..|-..|-.+..
T Consensus 117 ~~~gL~~l~~r~---f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRD---FKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhch---HHHHHHHHHccCc
Confidence 223334444555 6666666655543
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.79 E-value=0.19 Score=39.93 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CC-------
Q 027158 57 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PT------- 124 (227)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~------- 124 (227)
....|..++.+....|+++.|...+.++...++. .+...+..+.+....|+..+|+..++..+... ..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 3467888899999999999999999999886532 46788889999999999999999999888711 10
Q ss_pred -------------------C-------HHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHH
Q 027158 125 -------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFGICL 172 (227)
Q Consensus 125 -------------------~-------~~~~~~la~~~~~~------g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 172 (227)
. ..++..+|...... +. .+++...|..+++.+|. ..++++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 1 12455666655556 55 89999999999999996 8889999999
Q ss_pred HHHHHHhhhc
Q 027158 173 CSSAIAQLTK 182 (227)
Q Consensus 173 ~~~~~~~~~~ 182 (227)
.+..+.....
T Consensus 301 ~~~~~~~~~~ 310 (352)
T PF02259_consen 301 FNDKLLESDP 310 (352)
T ss_pred HHHHHHHhhh
Confidence 8888877554
No 299
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.78 E-value=0.026 Score=41.71 Aligned_cols=84 Identities=20% Similarity=0.137 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhc----C-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------Hc--CCC----HHHHHH
Q 027158 38 GLWAEAEKAYSSLLED----N-PL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-------TF--MAD----HDAWRE 97 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~----~-p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-------~~--p~~----~~~~~~ 97 (227)
..+++|++.|.-++-. . +. -+.++..+|.+|...|+.+....++++|++ .. |.. ....+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3455666655555442 1 11 134455666666666663333333333332 21 111 334555
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhh
Q 027158 98 LAEIYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~~ 121 (227)
+|.+..+.|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 566666666666666666665543
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.65 E-value=0.062 Score=39.71 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHHHHHc----CCC---HHHHHHHHHHHHHcccH-------HHHHHHHHHHHhhCCC------CHHHHH
Q 027158 71 QGNFPTAIEWLNKYLETF----MAD---HDAWRELAEIYVSLQMY-------KQAAFCYEELILSQPT------VPLYHL 130 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~----p~~---~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~ 130 (227)
...+++|++.|.-++-.. +.. +..+..+|.+|...|+. ..|+..|++++..... .....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 446778888877776431 111 56788999999999884 5566666666654322 246788
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 131 AYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 131 ~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
.+|.+..+.|+ +++|...|.+++....
T Consensus 170 LigeL~rrlg~---~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGN---YDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHcCCC
Confidence 99999999999 9999999999998654
No 301
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.64 E-value=0.0039 Score=45.74 Aligned_cols=57 Identities=23% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 35 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
...++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|+++++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555666666666666666666666666666666666666666666666666654
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.59 E-value=0.0061 Score=44.76 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 027158 69 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 69 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 125 (227)
...++.+.|.+.|.+++.+-|.....|..+|......|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345556666666666666666666666666666666666666666666666666654
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.50 E-value=0.074 Score=38.07 Aligned_cols=94 Identities=15% Similarity=-0.011 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CH----HHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DH----DAW 95 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~----~~~ 95 (227)
.++..+|..|...|+.+.|++.|.++....... .+.+..+..+.+..+++.....++.++-..-.. +. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567789999999999999999999988865433 367788888999999999999999998765433 22 234
Q ss_pred HHHHHHHHHcccHHHHHHHHHHH
Q 027158 96 RELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 96 ~~la~~~~~~~~~~~A~~~~~~a 118 (227)
..-|..++..++|..|...|-.+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 45677788889999998887554
No 304
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.16 Score=42.61 Aligned_cols=127 Identities=15% Similarity=-0.068 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhCCCchhhHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 027158 9 AKDCIKVLQKQFPESKRVGRL--EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YL 85 (227)
Q Consensus 9 A~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~l 85 (227)
++..+..-+..+|.++..+.. ++..+...+....+......++..+|++..+..+++......|..-.+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444456666666433 466677778888999999999999999999999999987777766555555544 88
Q ss_pred HHcCCCHHHHHHH------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158 86 ETFMADHDAWREL------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 135 (227)
Q Consensus 86 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (227)
...|.+......+ +......|+..++....+++....|.++.....+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888887665555 8888888999999999999999999887765555444
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.43 E-value=0.01 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158 93 DAWRELAEIYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 93 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 121 (227)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566666666666666666666666643
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.40 E-value=0.11 Score=34.95 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcC---ChHHHHHHHHHHHH-HcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158 59 VLHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 59 ~~~~~l~~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
...++++.++.... +..+.+.+++..++ -.|.. -+..+.|+..+.+.++|+.++.+.+..++..|+|..+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34445555554433 34455556666554 23322 33555566666666666666666666666666655543
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.40 E-value=0.14 Score=33.72 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=46.6
Q ss_pred HcCChHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-------hCCCCH----
Q 027158 70 AQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELIL-------SQPTVP---- 126 (227)
Q Consensus 70 ~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~---- 126 (227)
..|.+++|...++++++....- +-++-.|+..+...|+|++++...+.++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 3455555555555555543221 22344555566666666666555555552 233322
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.+.++.|..+...|. .++|+..|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr---~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGR---KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence 244566777777888 88888887776654
No 308
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.38 E-value=0.26 Score=40.21 Aligned_cols=69 Identities=13% Similarity=-0.076 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
.+++++.-.|-.+.+|+-........++-+.|+....+++...|. ....++.++-...+.+..-.+|++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk 358 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHH
Confidence 455566666666666666666666667767777666666665554 334445555444444444444444
No 309
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.31 Score=39.10 Aligned_cols=160 Identities=16% Similarity=0.079 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAK------------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN- 73 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~- 73 (227)
.+++..-.+++..+|+...+|...-.++... .-.++-+.+...++..+|++..+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 4567777788888888777776554433322 245667788899999999999999999999987764
Q ss_pred -hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------cCC-
Q 027158 74 -FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ----MYKQAAFCYEELILSQPTVPLYHLAYADVLYT------LGG- 141 (227)
Q Consensus 74 -~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~- 141 (227)
+..=+.+++++++.+|.+-.+|...-.+..... ...+=+++..+++.-++.|..+|.....++-. -|+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 578889999999999999888876655554432 35677888999998899999998888776652 221
Q ss_pred --CCcHHHHHHHHHHHhhhcCCCchhHH
Q 027158 142 --VDNILLAKKYYASTIDLTGGKNTKAL 167 (227)
Q Consensus 142 --~~~~~~A~~~~~~~~~~~~~~~~~~~ 167 (227)
......-+..-..++-.+|+ +..+|
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~-DqS~W 232 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPE-DQSCW 232 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCcc-cccee
Confidence 11244556666777777785 44333
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.31 E-value=0.35 Score=37.36 Aligned_cols=122 Identities=15% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCCChHHHHHHHHHHHHhC-CCch-------hhHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC-------H
Q 027158 2 DCQCLDVAKDCIKVLQKQF-PESK-------RVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD-------P 58 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~----~p---~~-------~ 58 (227)
..|+++.|..++.++-... ..++ ...+..|......+ +++.|..+++++++. .+ .. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4689999999999998865 3233 45566777777888 999999999999887 21 11 2
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 59 VLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
.++..++.++...+.++ +|...++.+-.-.|+.+..+...-.+....++.+.+.+.+.+++..-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 45667788888877654 455556666666788788776555666668999999999999997654
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.27 E-value=0.74 Score=40.67 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHHhCCC--c-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPE--S-------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIA 68 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~ 68 (227)
.+++++|..++.++...-|. . ....-..|.+....|+++.|..+.+.++..-|.+ ..++...|.+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 46788898888888776543 1 2334556778888899999999999999886654 35667788888
Q ss_pred HHcCChHHHHHHHHHHHHHcC----CCHHHH--HHHHHHHHHcc
Q 027158 69 KAQGNFPTAIEWLNKYLETFM----ADHDAW--RELAEIYVSLQ 106 (227)
Q Consensus 69 ~~~~~~~~A~~~~~~~l~~~p----~~~~~~--~~la~~~~~~~ 106 (227)
.-.|++++|..+..++.+... ..-..| +..+.++..+|
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 889999999999888877632 222333 33466666666
No 312
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.11 Score=43.94 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=78.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158 63 RRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 136 (227)
Q Consensus 63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 136 (227)
+-+.-.++..+|..++++|...+...|.+ +.....++.||....+.+.|.+++++|-+.+|.++......-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 44556677788999999999999887776 456788999999999999999999999999999998888888888
Q ss_pred HHcCCCCcHHHHHHHHHHHhhh
Q 027158 137 YTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 137 ~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
...|. -++|+.........
T Consensus 439 ~~E~~---Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDK---SEEALTCLQKIKSS 457 (872)
T ss_pred HHhcc---hHHHHHHHHHHHhh
Confidence 88888 88888877666544
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.18 E-value=0.1 Score=35.21 Aligned_cols=74 Identities=15% Similarity=0.031 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHH
Q 027158 23 SKRVGRLEGILLEAKG---LWAEAEKAYSSLLE-DNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 96 (227)
+....+.++.++.... +..+.+.+++..++ ..|.. .+..+.++.-+.+.++|+.++.+.+..++..|++..+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566778888887764 45678999999997 55544 467788999999999999999999999999999987653
No 314
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.076 Score=40.26 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|..+|. +.-|+..+...++..|+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c---~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC---YHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC---chhhHHHHHHHHHhCCC
Confidence 344555567777888888888888888888888888888888888888 88888888888888775
No 315
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=0.034 Score=45.89 Aligned_cols=87 Identities=13% Similarity=-0.064 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 027158 72 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 148 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 148 (227)
+.+..++..|.++++..|.....+.+.+.++++. |+--.|+.-+..|++++|....+|+.++.++..+++ +.+|
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r---~~ea 464 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR---YLEA 464 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh---HHHh
Confidence 4577899999999999999999999999998886 566678888889999999999999999999999999 9999
Q ss_pred HHHHHHHhhhcCC
Q 027158 149 KKYYASTIDLTGG 161 (227)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (227)
+.....+....|.
T Consensus 465 l~~~~alq~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQMSFPT 477 (758)
T ss_pred hhhHHHHhhcCch
Confidence 9988877777773
No 316
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.68 Score=41.79 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=87.2
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----------
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------- 91 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------- 91 (227)
+.+.+|..+|....+.|...+|++.|-++ +++..|..........|.|++-+.++.-+.+...+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 56788999999999999999999888664 466777888888888999999888888776542111
Q ss_pred -----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 027158 92 -----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 154 (227)
Q Consensus 92 -----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 154 (227)
..-.-..|+-++..|.|+.|.-+|... .-|..+|..+..+|+ |+.|...-++
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~Lge---yQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGE---YQGAVDAARK 1245 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHH---HHHHHHHhhh
Confidence 111235566777777777776666443 346778888888888 8888877766
Q ss_pred Hh
Q 027158 155 TI 156 (227)
Q Consensus 155 ~~ 156 (227)
+-
T Consensus 1246 An 1247 (1666)
T KOG0985|consen 1246 AN 1247 (1666)
T ss_pred cc
Confidence 53
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.39 Score=34.06 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHH
Q 027158 29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY 102 (227)
Q Consensus 29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~ 102 (227)
.-+.-+-+.++.++|+..|..+-+..-... -+....+.+....|+...|+..|..+-.-.|.- ..+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 334455566888888888888776644433 344566778888888999999888876544321 23455667778
Q ss_pred HHcccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHH
Q 027158 103 VSLQMYKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 178 (227)
Q Consensus 103 ~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (227)
...|-|+.-....+-.- ..+|--..+.-.||..-++.|+ +..|...|.+... +. ..++...+-+.....+.
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~-Da-~aprnirqRAq~mldlI 214 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN-DA-QAPRNIRQRAQIMLDLI 214 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc-cc-cCcHHHHHHHHHHHHHH
Confidence 88888887766655432 2234345577778888888898 9999999988876 22 24444444444444433
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.86 E-value=0.032 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF 88 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 88 (227)
.++..+|.++...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466788888888888888888888887653
No 319
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.83 E-value=0.62 Score=36.00 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=89.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHc----CC---C------
Q 027158 34 LEAKGLWAEAEKAYSSLLEDN----PLD----PVLHKRRVAIAKAQG-NFPTAIEWLNKYLETF----MA---D------ 91 (227)
Q Consensus 34 ~~~~~~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~----p~---~------ 91 (227)
....|+.+.|..++.++-... |+. ...+++.|.-....+ +++.|..+++++.++- +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356799999999999987754 332 255677888888888 9999999999999883 21 1
Q ss_pred -HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 92 -HDAWRELAEIYVSLQMYK---QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 92 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
......++.+|...+.++ +|....+.+-...|+.+..+...-.+....++ .+.+.+.+.+++..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHhcc
Confidence 235678888898877654 55666666666678877776444455555677 7888888888777543
No 320
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.96 Score=38.12 Aligned_cols=157 Identities=16% Similarity=0.050 Sum_probs=107.4
Q ss_pred CChHHHHHHHHHHHHhC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 027158 4 QCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------------ 53 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------ 53 (227)
..|.+|...|.-+.... |-+...+..++.++..+|+.+-|.....+++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 34667777776666543 345567888999999999988887777666432
Q ss_pred ---CCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHH-HHcccHHHHHHHHHHHHhh----
Q 027158 54 ---NPLDPVLHKR---RVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIY-VSLQMYKQAAFCYEELILS---- 121 (227)
Q Consensus 54 ---~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~---- 121 (227)
+|.+-..|.. ...-+.+.|=+..|.++++-.+.++|. +|-+...+.++| .+..+|.--+.+++..-..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2333333332 233445578899999999999999999 888777777776 4568899888888877433
Q ss_pred -CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 122 -QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 122 -~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
-|+- .+-..+|..|...........|...+.+|+...|.
T Consensus 412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2332 23344455555544422367889999999999884
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.83 E-value=0.3 Score=32.27 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=63.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC---CC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------cCCCHH
Q 027158 33 LLEAKGLWAEAEKAYSSLLEDN---PL---------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-------FMADHD 93 (227)
Q Consensus 33 ~~~~~~~~~~A~~~~~~~l~~~---p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~ 93 (227)
-....|-|++|...+++++... |. +..++..|+..+..+|+|++++..-..++.. +.+...
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 3345589999999999998862 21 2345667888899999999887777777654 444444
Q ss_pred HH----HHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 94 AW----RELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 94 ~~----~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
.| ++.|..+...|..++|+..|+.+-+
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 44 5778889999999999999998864
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.17 Score=42.87 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
+..-|.-.++..+|..+++.|...+.-.|.+. .....+..||....+.+.|.+.++++-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34455666778999999999999999877653 455677889999999999999999999999999988888888
Q ss_pred HHHHcccHHHHHHHHHHHHhh
Q 027158 101 IYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 101 ~~~~~~~~~~A~~~~~~al~~ 121 (227)
+....|.-++|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 889999999999988877643
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.80 E-value=0.099 Score=46.93 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=70.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---ChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
.+++...+.|++|+..|++.....|+-. ++.+..|.....+ | .+++|+..|++.. -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 4566777888889999988888887643 5666677665543 2 3556666665532 34556677888888
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 101 IYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 101 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
+|.++|+|++-++++.-|++..|++|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 899999999999999999998888875
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.80 E-value=0.079 Score=40.62 Aligned_cols=79 Identities=19% Similarity=0.061 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 027158 74 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 153 (227)
Q Consensus 74 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 153 (227)
+..=+...++.++- ....++..++..+...|+++.++..+++.+..+|.+...|..+-.+|+..|+ ...|+..|+
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~ 211 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHH
Confidence 44444444444432 3567888899999999999999999999999999999999999999999999 888888888
Q ss_pred HHhh
Q 027158 154 STID 157 (227)
Q Consensus 154 ~~~~ 157 (227)
+.-+
T Consensus 212 ~l~~ 215 (280)
T COG3629 212 QLKK 215 (280)
T ss_pred HHHH
Confidence 8776
No 325
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.78 E-value=0.87 Score=37.30 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL-----HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 100 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 100 (227)
.+...|-++..++++.+|...|.++.....+.+.. +..+..--+-+++.+.-...+-..-+..|.++......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34556888889999999999999998876555432 3233332333456666666666667778888888888899
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCC--C-------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 101 IYVSLQMYKQAAFCYEELILSQPT--V-------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 101 ~~~~~~~~~~A~~~~~~al~~~p~--~-------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
..++.+.|++|++.+..-...-.. . ...-...|.++...|. +.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~---f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR---FSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHH
Confidence 999999999999887766543111 1 1123456788889999 99999988887754
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.21 Score=41.22 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
....+..+...|-++.|+.+. .++.. .-.+....|+.+.|.+..++ .+++..|..||.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDH---RFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHH---HHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHH---HhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 455666777778877777642 23333 33445678888887776653 457889999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 107 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
+++-|..+|+++-. +..+..+|...|+ .+.-.+....+..
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~---~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGD---REKLSKLAKIAEE 401 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCC---HHHHHHHHHHHHH
Confidence 99999999988642 3445666777777 5444444444333
No 327
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.12 Score=39.13 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=58.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 63 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 63 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
++=..+...++++.|....++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..+...|+++.+-...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 444467778888889999999998889988888888999999999999999888888888888776544443
No 328
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.72 E-value=1.1 Score=37.89 Aligned_cols=123 Identities=11% Similarity=-0.054 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYV 103 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~ 103 (227)
..|......-...|+++...-.|++++-........|...+......|+.+-|-..+..+.+.. |..+.....-+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 4455566677788999999999999999888999999999999999999999999899888875 566778888888888
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 027158 104 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150 (227)
Q Consensus 104 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 150 (227)
..|++..|...+++.....|....+-...+......|+ .+.+..
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~---~~~~~~ 421 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN---LEDANY 421 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc---hhhhhH
Confidence 89999999999999998889988888888888999999 887774
No 329
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.70 E-value=0.23 Score=38.11 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 121 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 121 (227)
..++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566778888889999999999999999999999999999999999999999999999887653
No 330
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.68 E-value=0.071 Score=40.95 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158 43 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104 (227)
Q Consensus 43 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 104 (227)
|..+|.+|+.+.|+++..++.+|.+....|+.=.|+-+|-+++......+.+..+|...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777665544446666666666655
No 331
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.67 E-value=0.25 Score=44.52 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=74.4
Q ss_pred CCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 027158 3 CQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 72 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~----~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 72 (227)
.+.|+.|+..|+++..-+|. .-++.+..|.....+ | .+++|+..|++... .|.-|--|...+.+|.+.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhh
Confidence 35689999999999999995 346677777766544 2 57778887777543 6667777888899999999
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHH
Q 027158 73 NFPTAIEWLNKYLETFMADHDAWR 96 (227)
Q Consensus 73 ~~~~A~~~~~~~l~~~p~~~~~~~ 96 (227)
++++-++++.-+++..|++|..-.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCccHH
Confidence 999999999999999999976433
No 332
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.67 E-value=0.11 Score=32.90 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
..++|.++...|+ +++|+..+++++++
T Consensus 44 ll~lA~~~~~~G~---~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGH---YEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 3444455555555 55555555555544
No 333
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.91 Score=36.61 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=85.9
Q ss_pred CCCChHHHHHHHHHHHHhCC----C-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CHHHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFP----E-----SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLHKRRVA 66 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p----~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~-~~~~~~~l~~ 66 (227)
+.+++.+|..+-+..+...- . ....++.+...+...|+...-...+...+.. +.. .....+.+-.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 45567777776666655321 1 2345667777778888876666666655553 222 2344556667
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 126 (227)
.|...+.++.|.....+.. .|+ .+...+.+|.+..-+++|..|.+++-.|+...|++.
T Consensus 218 ~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 8888899999988887764 232 255778899999999999999999999999999753
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.57 E-value=0.07 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcccHHHHHHH--HHHHHhhCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFC--YEELILSQP 123 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p 123 (227)
.|..+|..+...|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555 224444443
No 335
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.45 E-value=0.22 Score=31.47 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=47.2
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP 123 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 123 (227)
-....|++..|++.+.+.++..... ..+..++|.+....|++++|+..+++++.+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999988764332 34678899999999999999999999997754
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.30 E-value=0.29 Score=39.53 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=67.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--------CC-----C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDN--------PL-----D-----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 92 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~--------p~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 92 (227)
|..++++++|..|..-|..+++.. |. + ..+-..+..||...++.+-|+....+.+-++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 455566677777777777666652 11 1 12345788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 93 DAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 93 ~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
.-+..-|.++....+|.+|-.-+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876655444
No 337
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.19 E-value=0.85 Score=35.89 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 128 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
....+|.|..++|+ ..+|.+.++...+-.|
T Consensus 277 IKRRLAMCARklGr---lrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGR---LREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhh---HHHHHHHHHHHhhhcc
Confidence 34556666666666 6777766666655444
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.17 E-value=2.2 Score=37.94 Aligned_cols=120 Identities=18% Similarity=0.056 Sum_probs=92.6
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D-------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD- 91 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~- 91 (227)
.+|..-...+.......++.+|..+..++-.--|. . ...-...|.+....|+++.|+...+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 46666777888888899999999998887764332 1 2334456678888999999999999999987765
Q ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHHcCC
Q 027158 92 ----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----V--PLYHLAYADVLYTLGG 141 (227)
Q Consensus 92 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~ 141 (227)
..+...+|.+..-.|++++|..+...+.+.... . ..+.+..+.++..+|+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 457788999999999999999999998876322 2 2345566778888884
No 339
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.01 E-value=0.61 Score=40.65 Aligned_cols=142 Identities=15% Similarity=0.049 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
..+.+|+.+++.+.+....+ ..+-..+.-|...|+++-|.++|.++- ....-..+|-..|+|..|..+-.+
T Consensus 746 kew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHH
Confidence 34556666655554443322 234456777788888888888776542 233455667778888887776665
Q ss_pred HHHHcCCC-HHHHHHHHHHHHHcc-------------cHHHHHHHHHHHH----------hhCCCC-HHHHHHHHHHHHH
Q 027158 84 YLETFMAD-HDAWRELAEIYVSLQ-------------MYKQAAFCYEELI----------LSQPTV-PLYHLAYADVLYT 138 (227)
Q Consensus 84 ~l~~~p~~-~~~~~~la~~~~~~~-------------~~~~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~ 138 (227)
.. .|.. ...|...+.-+-..| .++.|+..|.+.- +..|+. ...+..+|.-+..
T Consensus 817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEA 894 (1636)
T ss_pred hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHh
Confidence 43 2332 233444444444444 4455555555422 122322 3578888999999
Q ss_pred cCCCCcHHHHHHHHHHHhhhc
Q 027158 139 LGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 139 ~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.|+ ...|...|.++-+..
T Consensus 895 ~g~---lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 895 EGD---LKAAEEHFLEAGDFK 912 (1636)
T ss_pred ccC---hhHHHHHHHhhhhHH
Confidence 999 999998887775543
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.01 E-value=0.33 Score=35.25 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=58.8
Q ss_pred HHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcccHH
Q 027158 35 EAKGLWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 35 ~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~ 109 (227)
+..-.-+.|...|-++-.. .-+++...+.+|..|. ..+.++++..+.+++++.+. +++.+..|+.++...|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3443346676666554443 2356788888887776 66899999999999998654 4899999999999999999
Q ss_pred HHHH
Q 027158 110 QAAF 113 (227)
Q Consensus 110 ~A~~ 113 (227)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 9853
No 341
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.83 Score=36.80 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---ChHHHHH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-G---NFPTAIE 79 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~---~~~~A~~ 79 (227)
.++-+.+...++..+|++..+|..+..++.+.+ ++..-+.+++++++.+|.+..+|..+=.+.... . ...+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 456678888999999999999999999998775 468899999999999999988876554443332 2 2567788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH------cc------cHHHHHHHHHHHHhhCCCCHHHHHH
Q 027158 80 WLNKYLETFMADHDAWRELAEIYVS------LQ------MYKQAAFCYEELILSQPTVPLYHLA 131 (227)
Q Consensus 80 ~~~~~l~~~p~~~~~~~~la~~~~~------~~------~~~~A~~~~~~al~~~p~~~~~~~~ 131 (227)
+..+++..++.+-.+|.....+... .| -...-++.-..|+-.+|++..+|+.
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 9999999999999999988777763 23 2345566777788889998877655
No 342
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.77 E-value=0.15 Score=39.21 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 027158 9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 70 (227)
Q Consensus 9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 70 (227)
|..+|.++....|++...+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997655557778788777766
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.46 E-value=0.06 Score=25.02 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=7.7
Q ss_pred HHHHHHHHHcccHHHHHHH
Q 027158 96 RELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 96 ~~la~~~~~~~~~~~A~~~ 114 (227)
+.+|.++...|++++|...
T Consensus 5 ~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3344444444444444333
No 344
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=1 Score=36.39 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=89.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-----C-CHHHHH
Q 027158 32 ILLEAKGLWAEAEKAYSSLLEDNP----L-----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-----A-DHDAWR 96 (227)
Q Consensus 32 ~~~~~~~~~~~A~~~~~~~l~~~p----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p-----~-~~~~~~ 96 (227)
..++.++++.+|..+-+..+..-. . .+..|+.+..++...|+...-..++...+.... . .+...+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 344556889999888777665311 1 135567777778888887777777766654321 1 134556
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhh--CCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 97 ELAEIYVSLQMYKQAAFCYEELILS--QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.|-..|...+.|+.|.....++.-- ..++ ..+++.+|.+..-+++ |..|.++|.+++...|.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence 6777888899999999887776521 1122 4567888899999999 99999999999999994
No 345
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.41 E-value=0.75 Score=39.78 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH----------------------HHcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYL----------------------ETFMADHDAWRELAEIYVSLQMYKQAAFCY 115 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l----------------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 115 (227)
.++..+|..+.....+++|.++|.+.- ..-|++....-.+|..+...|.-++|+++|
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 556666666666666666666665421 122555555555555555556555555554
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.36 E-value=3.2 Score=36.07 Aligned_cols=116 Identities=19% Similarity=0.098 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHcCC--CH----HHHHHHHHHHHHcccH
Q 027158 40 WAEAEKAYSSLLEDNPL----DPVLHKRRVAIAK-AQGNFPTAIEWLNKYLETFMA--DH----DAWRELAEIYVSLQMY 108 (227)
Q Consensus 40 ~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~~~~ 108 (227)
...|+.+++.+++..+- ...++..+|.++. ...+++.|..++++++.+... .. .+...++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35577777777753222 2356778888776 678899999999988776633 22 2344667777777766
Q ss_pred HHHHHHHHHHHhhCCC----CHHHHHHHHHH--HHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 109 KQAAFCYEELILSQPT----VPLYHLAYADV--LYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 109 ~~A~~~~~~al~~~p~----~~~~~~~la~~--~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
. |...+++.++...+ .+...+.+-.+ ....++ +..|+..++......
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d---~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD---YNAALENLQSIAQLA 169 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHh
Confidence 6 88888888866544 23333444322 222357 888888888887765
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.33 E-value=0.086 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.052 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAY 47 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~ 47 (227)
+...+|..+...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.24 E-value=0.17 Score=24.38 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Q 027158 75 PTAIEWLNKYLETFMADHDAWREL 98 (227)
Q Consensus 75 ~~A~~~~~~~l~~~p~~~~~~~~l 98 (227)
+.+...|++++...|.++..|...
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHH
Confidence 344444444444444444444433
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.15 E-value=3 Score=34.97 Aligned_cols=146 Identities=13% Similarity=0.040 Sum_probs=104.4
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-
Q 027158 10 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF- 88 (227)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~- 88 (227)
.-++.+++.. ..+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++...+..+|.+++...
T Consensus 86 eh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 86 EHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 3444555443 44566788889999887 55777888899999888888877788887766 77788888888876542
Q ss_pred -------------------CCCHHHHH--------------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 027158 89 -------------------MADHDAWR--------------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 129 (227)
Q Consensus 89 -------------------p~~~~~~~--------------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 129 (227)
|++.+..+ .+-.-|....+|.+|+......++.+..+..+.
T Consensus 163 ~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 163 PRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred chhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 33322211 122334455789999999999999999888877
Q ss_pred HHHHHHHHH--------------------cCCCCcHHHHHHHHHHHhhhcCC
Q 027158 130 LAYADVLYT--------------------LGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 130 ~~la~~~~~--------------------~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
-++-..+.. -.+ +..++..|++.+..+.+
T Consensus 243 ~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rn---f~~~l~dFek~m~f~eG 291 (711)
T COG1747 243 KEIIENLRDKYRGHSQLEEYLKISNISQSGRN---FFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHHHHHHHHhccchhHHHHHHhcchhhcccc---HHHHHHHHHHHheeccC
Confidence 776665544 334 88999999999888775
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.06 E-value=1.4 Score=32.12 Aligned_cols=79 Identities=11% Similarity=-0.057 Sum_probs=59.3
Q ss_pred HHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCC
Q 027158 68 AKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGV 142 (227)
Q Consensus 68 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~ 142 (227)
++..-.-+.|...|-++-... -+++...+.||..|. ..+.++|+.++-+++.+.+. ++.++..|+.+++..|+
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~- 193 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN- 193 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-
Confidence 344434556666666543221 246888889988776 78899999999999987643 58999999999999999
Q ss_pred CcHHHHHH
Q 027158 143 DNILLAKK 150 (227)
Q Consensus 143 ~~~~~A~~ 150 (227)
++.|.-
T Consensus 194 --~e~AYi 199 (203)
T PF11207_consen 194 --YEQAYI 199 (203)
T ss_pred --hhhhhh
Confidence 988853
No 351
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.99 E-value=0.13 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
.+..||.+-...++|++|+.-|++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555555555553
No 352
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.98 E-value=0.15 Score=26.20 Aligned_cols=29 Identities=31% Similarity=0.190 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLET 87 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 87 (227)
+++..+|.+....++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.91 E-value=1.8 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHH
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAY 47 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~ 47 (227)
.++..+..+|..+...|++.+|..++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 46777888888888888877777665
No 354
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.84 E-value=0.52 Score=43.23 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCHHHHHH------HHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------cCC
Q 027158 26 VGRLEGILLEAKGLWAEAEK------AYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMA 90 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~------~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~p~ 90 (227)
.....|......|.+.+|.+ .+.+... +.|.....+..++.++...|+.++|+.+-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34455666667778887777 5553333 47888899999999999999999999998887533 244
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 91 DHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
....+.+++...+..++...|...+.++... .|.-.....+++.++...++ ++.|+.+.+.+...+.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e---~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE---ADTALRYLESALAKNK 1088 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH---HHHHHHHHHHHHHHHh
Confidence 5668889999999999999999999888854 34444566788888888888 9999999999998754
No 355
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=2.1 Score=32.83 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT 76 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--~~~~~ 76 (227)
..|++.-..+++.+|....++...-.+... ..-++.-+.++..+++.+|.+..+|...-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356777777888888777777666555544 12345667888999999999999998888877665 56778
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH------HHcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHcCCCC---c
Q 027158 77 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N 144 (227)
Q Consensus 77 A~~~~~~~l~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~---~ 144 (227)
-....++.++.+|.+-..|...-.+. ..-..+....++-..++..++.|..+|... -...+..|+.. .
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 88889999999999987776544333 444556666777788889999999888777 33444455521 1
Q ss_pred HHHHHHHHHHHhhhcCCCchhHH
Q 027158 145 ILLAKKYYASTIDLTGGKNTKAL 167 (227)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~ 167 (227)
+++-+.+....+-.+|+ +..++
T Consensus 209 l~~eL~~i~~~if~~p~-~~S~w 230 (328)
T COG5536 209 LEKELEYIFDKIFTDPD-NQSVW 230 (328)
T ss_pred HHHHHHHHHhhhhcCcc-ccchh
Confidence 45666777777777886 44443
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.76 E-value=0.9 Score=27.58 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=23.7
Q ss_pred HHHcCChHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHcccHHHHHHHH
Q 027158 68 AKAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIYVSLQMYKQAAFCY 115 (227)
Q Consensus 68 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~ 115 (227)
++...+..+|+..++++++..++.++-|..+ ..+|...|+|++.+.+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555544433332 33344455555555443
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.72 E-value=0.46 Score=36.57 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
....+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+ --.+..+|++.-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHHH
Confidence 33456778889999999999999999999999999999999999999 7777777766543
No 358
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.71 E-value=0.39 Score=24.34 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCChHHHHHH--HHHHHHHcC
Q 027158 61 HKRRVAIAKAQGNFPTAIEW--LNKYLETFM 89 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~--~~~~l~~~p 89 (227)
+..+|..+...|++++|+.. |.-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555555 224444444
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.68 E-value=1.6 Score=36.24 Aligned_cols=76 Identities=21% Similarity=0.004 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 110 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~ 110 (227)
-.+..+.|+.+.|.+.. ...+++..|..+|.....+|+++-|..+|+++-. +..|..+|...|+-+.
T Consensus 325 FeLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 325 FELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred hHHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHH
Confidence 34457889999998743 3445788999999999999999999999998522 3334444555555444
Q ss_pred HHHHHHHHH
Q 027158 111 AAFCYEELI 119 (227)
Q Consensus 111 A~~~~~~al 119 (227)
=..+...+.
T Consensus 392 L~kl~~~a~ 400 (443)
T PF04053_consen 392 LSKLAKIAE 400 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 360
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.67 E-value=0.56 Score=37.99 Aligned_cols=88 Identities=17% Similarity=0.026 Sum_probs=68.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHc--------CCC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 027158 66 AIAKAQGNFPTAIEWLNKYLETF--------MAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 127 (227)
Q Consensus 66 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 127 (227)
..++++++|-.|..-|..++++- |.. .-.-..|..||...++.+-|+....+.+.++|.++.
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 34556666666666666666542 111 113457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 128 YHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
-++.-|.++..+.+ |.+|...+--+.
T Consensus 264 nHLrqAavfR~LeR---y~eAarSamia~ 289 (569)
T PF15015_consen 264 NHLRQAAVFRRLER---YSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999999 999887665554
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.58 E-value=0.24 Score=23.82 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027158 38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVA 66 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 66 (227)
|+.+.|...|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666655544
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.43 E-value=1.6 Score=33.03 Aligned_cols=81 Identities=21% Similarity=0.055 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 027158 72 GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTL 139 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 139 (227)
......+.++.+++..+... ......+|..|+..|+|++|+.+|+.+....... ..+...+..|....
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34556677888887766533 3456688999999999999999999997554322 34677778888888
Q ss_pred CCCCcHHHHHHHHHHH
Q 027158 140 GGVDNILLAKKYYAST 155 (227)
Q Consensus 140 g~~~~~~~A~~~~~~~ 155 (227)
|+ .+..+...-+.
T Consensus 232 ~~---~~~~l~~~leL 244 (247)
T PF11817_consen 232 GD---VEDYLTTSLEL 244 (247)
T ss_pred CC---HHHHHHHHHHH
Confidence 88 76666554443
No 363
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.40 E-value=3.9 Score=33.79 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=108.7
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 12 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
-++.-++.+|.+...|+.+...+..+|.+++-.+.|++...-.|-.+.+|.....--....++.....+|-+++...- +
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-N 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-c
Confidence 456667788999999999999999999999999999999999999999998777767777888888889998886543 3
Q ss_pred HHHHHHHHHHHHHc-----cc----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHh
Q 027158 92 HDAWRELAEIYVSL-----QM----YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV------DNILLAKKYYASTI 156 (227)
Q Consensus 92 ~~~~~~la~~~~~~-----~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------~~~~~A~~~~~~~~ 156 (227)
.+.|...-..-.+. |+ .-+|.++.-...-.+|.....|...+..+...... ++.+.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 55665433222222 21 22333333333346788888888888776554332 23567777888888
Q ss_pred hhcCCCchhHHH
Q 027158 157 DLTGGKNTKALF 168 (227)
Q Consensus 157 ~~~~~~~~~~~~ 168 (227)
..-- ++..-++
T Consensus 189 ~tP~-~nleklW 199 (660)
T COG5107 189 QTPM-GNLEKLW 199 (660)
T ss_pred cCcc-ccHHHHH
Confidence 7543 3544443
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.38 E-value=2.8 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.014 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 027158 4 QCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLE 52 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 52 (227)
...++|+..|+++++..|... .++-..-.+.+..+++++-.+.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 467899999999999987533 4566677888999999998888887765
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.36 E-value=1.1 Score=27.25 Aligned_cols=58 Identities=5% Similarity=-0.103 Sum_probs=29.5
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL---AYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
-|.-++..++.++|+..++++++..++.+.-+. .+..+|...|+ +++++.+-..-+++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344444555566666666666655555443332 33344555555 66555554444433
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.29 E-value=0.56 Score=36.10 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
...+..|...|.+.+|+++.++++.++|-+...|..+-.++...|+--.+...|++.-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4556677777888888888888888888888888888888888887666666665543
No 367
>PF12854 PPR_1: PPR repeat
Probab=93.05 E-value=0.35 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027158 57 DPVLHKRRVAIAKAQGNFPTAIEWLNK 83 (227)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 83 (227)
+...|..+...+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666666666666666666654
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=5.1 Score=34.05 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------------------
Q 027158 38 GLWAEAEKAYSSLLED------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------------------ 87 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------------------ 87 (227)
..|++|...|.-++.. .|-+.+.+..++.++..+|+.+-|....++++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4577777777766554 4666788999999999999988888887776632
Q ss_pred ---cCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 88 ---FMADHDAWR---ELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 88 ---~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
.|.+-..|. ..-..+.+.|-|..|.++++-.++++|. +|.+...+-++|....+ +|.--+..++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar--eYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR--EYQWIIELSNEP 404 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence 122222222 2233344679999999999999999998 88877777776665443 154444444443
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.78 E-value=6.1 Score=34.36 Aligned_cols=145 Identities=15% Similarity=0.003 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhCC----CchhhHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHcCChH
Q 027158 7 DVAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDNPL--DP----VLHKRRVAIAKAQGNFP 75 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~l~~~~~~~~~~~ 75 (227)
..|+.+++.+.+..+ ....+.+.+|.++. ...+++.|..++.+++.+... .. .+...++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 457888888885443 24466778888777 779999999999999887533 22 23345677777777666
Q ss_pred HHHHHHHHHHHHcCC---CHHH-HHHH--HHHHHHcccHHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCCCC
Q 027158 76 TAIEWLNKYLETFMA---DHDA-WREL--AEIYVSLQMYKQAAFCYEELILSQ--PTVPLY----HLAYADVLYTLGGVD 143 (227)
Q Consensus 76 ~A~~~~~~~l~~~p~---~~~~-~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~ 143 (227)
|...+++.++.... .... .+.+ ...+...+++..|++.++...... +.++.+ ...-+.++...+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~-- 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS-- 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--
Confidence 99999999887544 2221 1222 222333479999999999998765 344432 2333455556665
Q ss_pred cHHHHHHHHHHH
Q 027158 144 NILLAKKYYAST 155 (227)
Q Consensus 144 ~~~~A~~~~~~~ 155 (227)
.+.+++...++
T Consensus 195 -~~d~~~~l~~~ 205 (608)
T PF10345_consen 195 -PDDVLELLQRA 205 (608)
T ss_pred -chhHHHHHHHH
Confidence 56666666655
No 370
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=92.24 E-value=3.4 Score=30.14 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcC
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIEWLNKYLETFM 89 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~p 89 (227)
+..+-......|+|+.|-.+|--.+...+-+....-.+|. ++.+.+......++++......|
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 3444455667799999999999999987777655445554 77777766666677776666555
No 371
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.19 E-value=12 Score=37.44 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=103.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CC----------
Q 027158 22 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MA---------- 90 (227)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~---------- 90 (227)
.....|...|.+....|.++.|....-.+.+.. -+.++...|..++..|+...|+..+++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 456788999999999999999999988888766 56788999999999999999999999999653 33
Q ss_pred C------HHHHHHHHHHHHHcccH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------------cCCCCcHHH---
Q 027158 91 D------HDAWRELAEIYVSLQMY--KQAAFCYEELILSQPTVPLYHLAYADVLYT------------LGGVDNILL--- 147 (227)
Q Consensus 91 ~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~~~~--- 147 (227)
. ..+....+......+++ ..-+..|..+.++.|.....++.+|..|-+ .|+ +..
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~---~~~~l~ 1822 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGR---VLSLLK 1822 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccccccc---HHHHHH
Confidence 1 11334444444455553 456788999999999776666667644332 222 444
Q ss_pred HHHHHHHHhhhcCCCchhHHHhHHHHHHHH
Q 027158 148 AKKYYASTIDLTGGKNTKALFGICLCSSAI 177 (227)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (227)
++..|.+++..+.......+=.+...+..+
T Consensus 1823 ~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred HHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence 566666777765531111222444445443
No 372
>PF13041 PPR_2: PPR repeat family
Probab=91.82 E-value=1.2 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
|..+-..+.+.|++++|.++|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 373
>PF12854 PPR_1: PPR repeat
Probab=91.60 E-value=0.65 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 027158 91 DHDAWRELAEIYVSLQMYKQAAFCYEE 117 (227)
Q Consensus 91 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 117 (227)
+...|..+...|.+.|+.++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445666666667777777777666654
No 374
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.42 E-value=3.9 Score=29.22 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--HHHHHHHHHHHHcCChHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESK--RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--P--VLHKRRVAIAKAQGNFPT 76 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~--~~~~~l~~~~~~~~~~~~ 76 (227)
.+..++|+.-|..+-+..-.+. -+.+..+.+....|+...|+..|..+-...|.- . .+...-+.++...|.|+.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 3567788888888776654332 234556778888899999999999887765421 1 233444556777888888
Q ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 77 AIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 77 A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
.....+..- .-+|--..+.-.||....+.|++..|..+|..... +.+.|....+.+.+..
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 666655432 12333355677888899999999999999988776 5555666666666554
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.29 E-value=1.1 Score=30.68 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
...+.....+...+..|++..|..+...++..+|++..+....+.++..+|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677778888888999999999999999999999999999988888875
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.24 E-value=4.8 Score=29.92 Aligned_cols=56 Identities=21% Similarity=0.118 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 57 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 57 (227)
+.+...+++...+.-++..|.+......+-..+.-.|+|++|...++-+-...|++
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34566777777777777777777777777777777777777777777777776665
No 377
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=91.14 E-value=2.2 Score=34.37 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158 40 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 84 (227)
Q Consensus 40 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 84 (227)
.-+|+.+++.++...|.+......+..+|...|-.+.|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 457888888889999999999989999999999999998888763
No 378
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.48 Score=37.34 Aligned_cols=99 Identities=17% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC---CC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNP---LD----------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p---~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
.+...+..++++.|..-|.+++.... .+ .....+++.+-+..+.+..|+..-..++..+++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 34557778888888888888776421 00 012223334444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 027158 91 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 128 (227)
Q Consensus 91 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 128 (227)
...+++..+..+....++++|+..+..+....|++...
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 45555555555555555555555555555555554443
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.92 E-value=0.66 Score=24.73 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Q 027158 96 RELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 96 ~~la~~~~~~~~~~~A~~~~~~al 119 (227)
+.+|..|...|+.+.|...+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.82 E-value=9.6 Score=37.95 Aligned_cols=124 Identities=15% Similarity=0.017 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CC----------
Q 027158 56 LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PT---------- 124 (227)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~---------- 124 (227)
....+|...|.+....|+++.|...+-.+.+.. -+.++...|.+....|+-..|+..+++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 346899999999999999999999999988777 57899999999999999999999999999543 22
Q ss_pred C------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhhcC
Q 027158 125 V------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG 183 (227)
Q Consensus 125 ~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (227)
. ..+.+.++......|+ ..-..-+.+|..+.+..|. +...++.++.-+..+....+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~e-we~~hy~l~~yy~kll~~~~~ 1808 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPE-WEDKHYHLGKYYDKLLEDYKS 1808 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHccc-ccCceeeHHHHHHHHhhhhhc
Confidence 1 1244555555556666 2245678899999999995 666667777666666554443
No 381
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.77 E-value=0.79 Score=34.19 Aligned_cols=33 Identities=3% Similarity=0.036 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH---------HcccHHHHHHHHHHHHhhCCCC
Q 027158 93 DAWRELAEIYV---------SLQMYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 93 ~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~ 125 (227)
..+-..|..+. ..++...|+.++++|+.++|..
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 35556666663 4467889999999999998865
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.67 E-value=4.3 Score=32.99 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=9.6
Q ss_pred cccHHHHHHHHHHHHh
Q 027158 105 LQMYKQAAFCYEELIL 120 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~ 120 (227)
.|+|+.|+..+=++++
T Consensus 254 ~gryddAvarlYR~lE 269 (379)
T PF09670_consen 254 QGRYDDAVARLYRALE 269 (379)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4566666666655554
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.47 E-value=4.5 Score=30.66 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHccc
Q 027158 40 WAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM 107 (227)
Q Consensus 40 ~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~ 107 (227)
....++.+.+++..... ...+...+|.-|+..|++++|..+|+.+....... ......+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34556777777665332 13556788999999999999999999997654432 4567788889999999
Q ss_pred HHHHHHHHHHHH
Q 027158 108 YKQAAFCYEELI 119 (227)
Q Consensus 108 ~~~A~~~~~~al 119 (227)
.+..+.+.-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988887765544
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.38 E-value=5.3 Score=32.64 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 120 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 120 (227)
...+..++.-.|++..|++.++-.- ...+-+...++.+|.+|+.+++|.+|+..|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788999999999887531 11233456789999999999999999999999874
No 385
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.23 E-value=8 Score=30.71 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcCC-CCH
Q 027158 6 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDNP-LDP 58 (227)
Q Consensus 6 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~~l~~~p-~~~ 58 (227)
-++|+.+-+-+....|..|+++-..+...++. +-.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 36788888888999999999888777766544 235677788888887643 222
Q ss_pred HHHHHHHHHHHH-----cCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 027158 59 VLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA 131 (227)
Q Consensus 59 ~~~~~l~~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 131 (227)
..--.++.++-. .-+|..-..+|.....+.| +|..-.|.+.......-.+.++...+..... -..+..++..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~ 370 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA 370 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence 222333333332 2356666666666666665 4555667777777777778888887776654 2345667888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 132 YADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 132 la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.|..+.++|. .++|...|.+++.+.++
T Consensus 371 RadlL~rLgr---~~eAr~aydrAi~La~~ 397 (415)
T COG4941 371 RADLLARLGR---VEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence 9999999999 99999999999999885
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.63 E-value=7.8 Score=29.70 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=76.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChH-
Q 027158 2 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQGNFP- 75 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~- 75 (227)
..++|++|++++-+. +..+...|++..|.++..-.++. .|.+......++.+....+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 356777777766555 44455555555554444333332 2334444456666665554322
Q ss_pred HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH----------------HhhCCCCHHHHHHHH
Q 027158 76 TAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEEL----------------ILSQPTVPLYHLAYA 133 (227)
Q Consensus 76 ~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la 133 (227)
+-..+.+++++.. -.++..+..+|..+.+.|++.+|...|-.. ....|.....+...|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 3445555555544 135788999999999999888886655211 133455555555555
Q ss_pred HH-HHHcCCCCcHHHHHHHHHHHhhh
Q 027158 134 DV-LYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 134 ~~-~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.+ |...|+ ...|...+....+.
T Consensus 148 VL~yL~l~n---~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGN---LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTB---HHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---HHHHHHHHHHHHHH
Confidence 44 555678 88888877666655
No 387
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.43 E-value=7.6 Score=29.29 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhh
Q 027158 108 YKQAAFCYEELIL-----SQPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 108 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~ 158 (227)
.+.|...|++|+. +.|.+|. ...+.+..++. +|+ .++|+...+++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 4778888888884 5677775 34556665544 788 99998888887764
No 388
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=9.6 Score=30.32 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=99.2
Q ss_pred CCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH--HHHHHHHH
Q 027158 2 DCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVL--HKRRVAIA 68 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~--~~~l~~~~ 68 (227)
++++|.+|+.+...++.... .-..++..-+..|....+..+|...+..+-.. .|....+ =..-|..+
T Consensus 140 d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlh 219 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILH 219 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcccee
Confidence 56788888888777765422 23456677788888888888887777665443 2222222 12334556
Q ss_pred HHcCChHHHHHHHHHHHHHcCC---CHHHHHHH---HHHHHHcccHHH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 027158 69 KAQGNFPTAIEWLNKYLETFMA---DHDAWREL---AEIYVSLQMYKQ--AAFCYEELILSQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 69 ~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l---a~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~~~g 140 (227)
....+|..|..+|-++++-+.. +..+...| -.+-...+..++ ++-.-..+++....+..++...|.++....
T Consensus 220 a~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS 299 (411)
T KOG1463|consen 220 AAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS 299 (411)
T ss_pred ecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc
Confidence 6667899999999888875432 23333322 222233344443 444445666766777788888888776533
Q ss_pred CCCcHHHHHHHHHHHhhhcC
Q 027158 141 GVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~ 160 (227)
..+|+.|+..|..-+..+|
T Consensus 300 -LkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 300 -LKDFEKALADYKKELAEDP 318 (411)
T ss_pred -HHHHHHHHHHhHHHHhcCh
Confidence 2238999999988888777
No 389
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=89.19 E-value=8.7 Score=29.69 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH--HHHcCC----hHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 027158 32 ILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKRRVAI--AKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEI 101 (227)
Q Consensus 32 ~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~--~~~~~~----~~~A~~~~~~~l~~~p~~~~~~~~la~~ 101 (227)
..+...++|++=...+.+......+ ... |...... ...... .......++..++..|++..++...|..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 3445567777766666666543221 111 1111111 111111 1135666777777788877777777776
Q ss_pred HHHc----------------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 102 YVSL----------------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 102 ~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
+... .-.+.|...+.+|+.++|....+...+-.+-...|.
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 6654 124667777777778888877777666666666665
No 390
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.93 E-value=2.8 Score=36.51 Aligned_cols=118 Identities=19% Similarity=0.094 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLE----------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 82 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 82 (227)
.++..+|..+.....|++|.++|...-. .-|++...+-.+|.++.+.|.-++|.+.|-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 5678888888888999999888776522 246777777888888888888888888776
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 83 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 83 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
+. ..|. +- -..+...++|.+|+++.++-- -|+-.......+.-+..-++ .-+|++.++++
T Consensus 877 r~--s~pk---aA---v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~---~~eaIe~~Rka 936 (1189)
T KOG2041|consen 877 RR--SLPK---AA---VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADAN---HMEAIEKDRKA 936 (1189)
T ss_pred hc--cCcH---HH---HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcc---hHHHHHHhhhc
Confidence 53 1222 11 133456678888887765531 23323333333444455555 66777766665
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.25 E-value=6.9 Score=34.54 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhcCC
Q 027158 145 ILLAKKYYASTIDLTGG 161 (227)
Q Consensus 145 ~~~A~~~~~~~~~~~~~ 161 (227)
+.+|+..-+...++.|.
T Consensus 382 ~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 382 YQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 66666666666666664
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.21 E-value=1.4 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.+.+|..|..+|+ .+.|...+++++...
T Consensus 2 kLdLA~ayie~Gd---~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGD---LEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCC---hHHHHHHHHHHHHcC
Confidence 3679999999999 999999999999643
No 393
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=5.4 Score=30.72 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAI 78 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~------~~~~~~~~A~ 78 (227)
+.-+..+..++..+|.+-.+|...-.++... ..+..-....++.+..+|.+..+|...-.+. ..-..+..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3445678888889999988888887777666 6788888889999999999887775444433 2223344445
Q ss_pred HHHHHHHHHcCCCHHHHHHH---HHHHHHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027158 79 EWLNKYLETFMADHDAWREL---AEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADV 135 (227)
Q Consensus 79 ~~~~~~l~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (227)
++-..++..++.+..+|... -...+..|+ +++=+++.-.++-.+|++..+|..+-.+
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 66666788899999999877 333333443 5666777777788899887776655443
No 394
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.86 E-value=6.6 Score=26.77 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158 38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 116 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 116 (227)
|+...-+.+|-..-. . .-|..+|. ....+|+-++-...++...+-...+|.....+|.+|.+.|+..+|-+++.
T Consensus 70 ~NlKrVi~C~~~~n~---~--se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 70 GNLKRVIECYAKRNK---L--SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchHHHHHHHHHhcc---h--HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 555555555543221 1 12334444 55667777777777777776666678888888999999999888888888
Q ss_pred HHHhhC
Q 027158 117 ELILSQ 122 (227)
Q Consensus 117 ~al~~~ 122 (227)
+|-+..
T Consensus 145 ~ACekG 150 (161)
T PF09205_consen 145 EACEKG 150 (161)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 887543
No 395
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.67 E-value=20 Score=32.02 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cccHHHHHHH
Q 027158 38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFC 114 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~~~~~~A~~~ 114 (227)
+.-++-+.-++.-+..++.+...+..|..+++..|++++....-.++.++.|.++..|..-..-... .+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444455566666666777777777788888888888877777777777788887777655443322 2566677777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhhh
Q 027158 115 YEELILSQPTVPLYHLAYADVLYTLGG----VDNILLAKKYYASTIDL 158 (227)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~~~~~g~----~~~~~~A~~~~~~~~~~ 158 (227)
|++++. +-+++..|...+..+...++ .++++.-...|.+++..
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 777773 33344455555544443332 12256666666666653
No 396
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.62 E-value=1.2 Score=20.93 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=9.1
Q ss_pred HHHHHHHHcccHHHHHHHHHH
Q 027158 97 ELAEIYVSLQMYKQAAFCYEE 117 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~ 117 (227)
.+-..|.+.|++++|...|++
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHHccchHHHHHHHHHH
Confidence 333444444444444444443
No 397
>PF13041 PPR_2: PPR repeat family
Probab=87.28 E-value=3.2 Score=22.39 Aligned_cols=44 Identities=7% Similarity=-0.154 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhHH
Q 027158 125 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 171 (227)
Q Consensus 125 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 171 (227)
+...+..+-..+.+.|+ +++|.+.|++..+..-.++...+..+.
T Consensus 2 ~~~~yn~li~~~~~~~~---~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGK---FEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred chHHHHHHHHHHHHCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567788899999999 999999999999875433554444443
No 398
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.16 E-value=7.4 Score=26.52 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 027158 72 GNFPTAIEWLNKYLETFMADHDAWRELA-EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 150 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 150 (227)
|+....+.++-.. ....+ |..+| .....+|+-++-...+....+-...+|..+..+|.+|.+.|+ ..+|-+
T Consensus 70 ~NlKrVi~C~~~~----n~~se-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~---~r~~~e 141 (161)
T PF09205_consen 70 GNLKRVIECYAKR----NKLSE-YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN---TREANE 141 (161)
T ss_dssp S-THHHHHHHHHT----T---H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHH
T ss_pred cchHHHHHHHHHh----cchHH-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc---hhhHHH
Confidence 4556666665542 22222 33333 445677888888888888887667789999999999999999 999999
Q ss_pred HHHHHhhhc
Q 027158 151 YYASTIDLT 159 (227)
Q Consensus 151 ~~~~~~~~~ 159 (227)
.++++-+..
T Consensus 142 ll~~ACekG 150 (161)
T PF09205_consen 142 LLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998764
No 399
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.06 E-value=7.6 Score=34.31 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhCC
Q 027158 108 YKQAAFCYEELILSQP 123 (227)
Q Consensus 108 ~~~A~~~~~~al~~~p 123 (227)
.+.|+++|+++++..|
T Consensus 303 ~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 303 LNHAIEWYRKAFEVEP 318 (1226)
T ss_pred HHHHHHHHHHHhccCc
Confidence 3444444444444444
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.99 E-value=11 Score=28.18 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=54.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 027158 32 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 92 (227)
Q Consensus 32 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 92 (227)
..+...+...+|+...+.-++..|.+......+..+++-.|++++|..-++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456678899999999999999999999999999999999999999999999999999874
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.96 E-value=15 Score=29.89 Aligned_cols=62 Identities=19% Similarity=0.064 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH--HHHHcCChHHHHHHHHHHHHHc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVA--IAKAQGNFPTAIEWLNKYLETF 88 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~--~~~~~~~~~~A~~~~~~~l~~~ 88 (227)
....+..++..++|..|...+..+...-|... ..+..+.. .++..-++.+|...++..+...
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34566778899999999999999998634333 34444444 4456778999999999987653
No 402
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.78 E-value=13 Score=28.79 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHc-----CCCHH-HHHHHHHHHHHccc
Q 027158 38 GLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETF-----MADHD-AWRELAEIYVSLQM 107 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~-~~~~la~~~~~~~~ 107 (227)
.++++|+..|++++++.|.-. .++..+..+.+++|++++-+..|.+.+..- .+..+ ....+-..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 589999999999999987653 567778889999999999999999877532 11111 11222222222333
Q ss_pred HHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 108 YKQAAFCYEELILS--QPTVPL----YHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 108 ~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
.+--..+|+..+.. +..+.. ....+|.+++..|+ |.+-...+++.-.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e---~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE---YTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH---HHHHHHHHHHHHH
Confidence 33334444444321 112222 34568888988888 6665555555443
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.72 E-value=18 Score=30.59 Aligned_cols=98 Identities=15% Similarity=-0.005 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 027158 55 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 134 (227)
Q Consensus 55 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (227)
|-+...+..+..++.....+.-....+.+.+... .+..+++.++.+|... ..++-...+++.++.+=++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333344444444444444555555556655543 4556666666666666 4455556666666666555555556665
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 135 VLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 135 ~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
.|.. ++ -..+..+|.+++..
T Consensus 141 ~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hc---hhhHHHHHHHHHHH
Confidence 5554 44 55556666555543
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.55 E-value=8 Score=33.22 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccc
Q 027158 28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 107 (227)
Q Consensus 28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~ 107 (227)
...+..+..+|-.++|+ ...++.. ..-.+..+.|+++.|..+..+ .++..-|..||.+....++
T Consensus 618 t~va~Fle~~g~~e~AL-------~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQAL-------ELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhHHhHhhhccchHhhh-------hcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc
Confidence 33445555555555554 3333321 233455677888887776554 4677889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027158 108 YKQAAFCYEELILS 121 (227)
Q Consensus 108 ~~~A~~~~~~al~~ 121 (227)
+..|.+||.++...
T Consensus 682 l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 682 LPLASECFLRARDL 695 (794)
T ss_pred chhHHHHHHhhcch
Confidence 99999999988743
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.04 E-value=16 Score=29.16 Aligned_cols=112 Identities=15% Similarity=-0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC------------------
Q 027158 28 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM------------------ 89 (227)
Q Consensus 28 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p------------------ 89 (227)
..+.....+..+..+-++....+++++|.-..++..++.-... -..+|...|+++++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3444555566677777777788888888877777666653222 24566666666654311
Q ss_pred -----CC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 027158 90 -----AD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG 141 (227)
Q Consensus 90 -----~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 141 (227)
.+ ...-..|+.|..++|+..+|++.++...+-.|-. ..++-++-..+..+.-
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234578999999999999999999998877732 2344455555554444
No 406
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.01 E-value=25 Score=31.39 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAY 47 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 47 (227)
++.|+|+.|...++.. ...|+....|..++......|+.--|..+|
T Consensus 455 id~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678999998777654 677888888888887766666655555444
No 407
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.71 E-value=8 Score=31.22 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=50.8
Q ss_pred HhcCCCCHHHHHHHHH---HHHHcC---ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158 51 LEDNPLDPVLHKRRVA---IAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 51 l~~~p~~~~~~~~l~~---~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 118 (227)
.+..|.+..+....-. .+...+ ..-+|+.+++.++..+|.+......+..+|...|-.+.|...|...
T Consensus 170 te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 170 TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4556665544332222 223333 3558999999999999999999999999999999999999998653
No 408
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=17 Score=30.81 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027158 7 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKY 84 (227)
Q Consensus 7 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 84 (227)
....+.+.......|+.+....+.+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34456666777788999988899999999999988888888888871111 1234567888888888999999999888
Q ss_pred HHHcCCCHHHHHHHH
Q 027158 85 LETFMADHDAWRELA 99 (227)
Q Consensus 85 l~~~p~~~~~~~~la 99 (227)
.+...-+--.|..++
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 877654444444444
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.63 E-value=7.5 Score=31.81 Aligned_cols=61 Identities=13% Similarity=-0.059 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELI--------LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
+...|..++.-.|+|..|++.++..= ...+-+...++.+|-+|..+++ |.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrR---Y~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRR---YADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34456677788899999999876532 1122345578999999999999 9999999988763
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.15 E-value=13 Score=30.36 Aligned_cols=95 Identities=16% Similarity=0.036 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-------C-CCHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------M-ADHD 93 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-------p-~~~~ 93 (227)
.++.-+|.-|...|+.+.|+..|.++-....+. ...+.++..+-+..|+|-....+..++...- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456667888888899999999998866554332 3556677777777888877777766665431 0 1133
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
+.+.-|.+.+..++|..|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666667777778888888876554
No 411
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=16 Score=28.47 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHhCC--------CchhhHHHHHHHHHHcCCHHHHHHH---HHHHHhc--CCCCHHHHHHHHHHH-
Q 027158 3 CQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKA---YSSLLED--NPLDPVLHKRRVAIA- 68 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~---~~~~l~~--~p~~~~~~~~l~~~~- 68 (227)
.+++++|+..|.+++.... ........++.+|...|++..--+. .+.++.. .|....+...+...+
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 4678899999999988742 1224456788889888887654333 3333332 233333333333322
Q ss_pred HHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh----hC--CCCHHHHHHHHHHH
Q 027158 69 KAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQ--PTVPLYHLAYADVL 136 (227)
Q Consensus 69 ~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~ 136 (227)
.....++.-+..+...++..... ...-+.++.+++..|+|.+|+......+. .+ |.-...+..-..+|
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvy 175 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVY 175 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHH
Confidence 22345666666666666654322 22345678889999999999998877763 22 33345677778889
Q ss_pred HHcCCCCcHHHHHHHHHHHhh
Q 027158 137 YTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 137 ~~~g~~~~~~~A~~~~~~~~~ 157 (227)
+...+ ..++...+..+..
T Consensus 176 h~irn---v~KskaSLTaArt 193 (421)
T COG5159 176 HEIRN---VSKSKASLTAART 193 (421)
T ss_pred HHHHh---hhhhhhHHHHHHH
Confidence 98888 7777766665543
No 412
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=84.40 E-value=2.9 Score=19.96 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=11.4
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Q 027158 96 RELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 96 ~~la~~~~~~~~~~~A~~~~~~al 119 (227)
..+-..|.+.|++++|..+|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555554443
No 413
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.17 E-value=8.7 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 109 (227)
.+.....+.-.+..|++.-|.++...++..+|++..+....+.++...|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4555677777888999999999999999999999998888888887776543
No 414
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.75 E-value=28 Score=30.08 Aligned_cols=76 Identities=22% Similarity=0.162 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158 73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 152 (227)
Q Consensus 73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~ 152 (227)
..+.+....+..+.-...++.....-+..+-..+..++|-.+|++.+..+|+ ..+...|..+++.|- ...|...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~ 97 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL---AKDAQLIL 97 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh---hhHHHHHH
Confidence 3444444444433333333444444555555555666666666666655555 444455555555555 55555444
Q ss_pred H
Q 027158 153 A 153 (227)
Q Consensus 153 ~ 153 (227)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 4
No 415
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.75 E-value=14 Score=26.74 Aligned_cols=132 Identities=14% Similarity=0.028 Sum_probs=66.7
Q ss_pred chhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHcCCCHHHHH
Q 027158 23 SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWR 96 (227)
Q Consensus 23 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~ 96 (227)
.|..-..+|..+.. +.++++|..+|..--..+. .+...+.+|..++. .++...|+..+..+.. -+++.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 44455555555443 3566666666665544332 23344455554332 2356666666666544 34556666
Q ss_pred HHHHHHHHc-----cc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCC----------CcHHHH
Q 027158 97 ELAEIYVSL-----QM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTL-----------GGV----------DNILLA 148 (227)
Q Consensus 97 ~la~~~~~~-----~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~----------~~~~~A 148 (227)
.+|.+...- ++ .++|.+++.++-.+. +..+.+.|.-.+... |.+ .+.+.|
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 666555432 22 456666666664433 333334443333322 111 236677
Q ss_pred HHHHHHHhhhc
Q 027158 149 KKYYASTIDLT 159 (227)
Q Consensus 149 ~~~~~~~~~~~ 159 (227)
..+--++-+++
T Consensus 188 ~qfa~kACel~ 198 (248)
T KOG4014|consen 188 LQFAIKACELD 198 (248)
T ss_pred HHHHHHHHhcC
Confidence 77666666664
No 416
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.46 E-value=13 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 53 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 53 (227)
..++.-.|..++..|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 356677789999999999999999998874
No 417
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=40 Score=31.39 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHh
Q 027158 90 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 169 (227)
Q Consensus 90 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 169 (227)
+.+..|..+|.+....|...+|++.|-+| ++|..+...-.+....|. |++-+.++.-+.+.... +..--.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~E--~~id~e 1171 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVRE--PYIDSE 1171 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhcC--ccchHH
Confidence 45778999999999999999998888554 567777777888888888 99888888877765432 223334
Q ss_pred HHHHHHHHHh
Q 027158 170 ICLCSSAIAQ 179 (227)
Q Consensus 170 l~~~~~~~~~ 179 (227)
++.++.+.++
T Consensus 1172 Li~AyAkt~r 1181 (1666)
T KOG0985|consen 1172 LIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHhch
Confidence 4555554444
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.00 E-value=7.7 Score=28.05 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 75 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 75 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
+..++..++.+...| ++..+..++.++...|+.++|....+++....|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344555566666666 5677777777777777777777777777777773
No 419
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=1.5 Score=34.78 Aligned_cols=80 Identities=20% Similarity=0.047 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
...++.+-...+.+..|+.....++..++....+++.++..+....++++|++.+..+....|++....-.+...-....
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 34466777788899999988888888888889999999999999999999999999999999999877666555544433
No 420
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=82.76 E-value=6.6 Score=29.43 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCCHH------------HHHHHHHHHHHcccH-HHH-HHHHHHHHhh--CCCCHH--H
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMADHD------------AWRELAEIYVSLQMY-KQA-AFCYEELILS--QPTVPL--Y 128 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~~la~~~~~~~~~-~~A-~~~~~~al~~--~p~~~~--~ 128 (227)
..+..|+++.|+.+..-+++.+-.-|+ -...-+......|.. +-. ...+...... -|+... .
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 345678999999999999986533222 122223333344442 111 1222222211 133333 3
Q ss_pred HHHHHHHHHHc------CCCCcHHHHHHHHHHHhhhcCC
Q 027158 129 HLAYADVLYTL------GGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 129 ~~~la~~~~~~------g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
+...|..+... ++.+....|+.+++++++++|.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 44555555321 2333388999999999999985
No 421
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.03 E-value=33 Score=29.74 Aligned_cols=69 Identities=13% Similarity=-0.014 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027158 9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 86 (227)
Q Consensus 9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 86 (227)
...+.++++...++.. ..-.+..+.|+++.|..+..+ .++..=|..||......|++..|.++|.++..
T Consensus 626 ~~g~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 626 SQGMKEQALELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hccchHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3444555556555322 223445677888888775443 45677799999999999999999999998754
No 422
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.02 E-value=4.4 Score=24.43 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=8.0
Q ss_pred ccHHHHHHHHHHHHh
Q 027158 106 QMYKQAAFCYEELIL 120 (227)
Q Consensus 106 ~~~~~A~~~~~~al~ 120 (227)
|+|++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555553
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.32 E-value=14 Score=24.82 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 027158 72 GNFPTAIEWLNKYLETFMADH---------DAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLG 140 (227)
Q Consensus 72 ~~~~~A~~~~~~~l~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g 140 (227)
+....-...+++++..+.++. ..|...+.. -. .+..+|..+.. +.-..+..+...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 445555667777777665542 233333322 12 66666666654 44566777777888888888
Q ss_pred CCCcHHHHHHHHHHHh
Q 027158 141 GVDNILLAKKYYASTI 156 (227)
Q Consensus 141 ~~~~~~~A~~~~~~~~ 156 (227)
+ +++|...|+.++
T Consensus 114 ~---~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 N---FKKADEIYQLGI 126 (126)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred C---HHHHHHHHHhhC
Confidence 8 888888877654
No 424
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.68 E-value=8.7 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 027158 29 LEGILLEAKGLWAEAEKAYSSLL 51 (227)
Q Consensus 29 ~~a~~~~~~~~~~~A~~~~~~~l 51 (227)
..|.-+-..|++.+|+.+|+.++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444445555555555554443
No 425
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.59 E-value=28 Score=27.87 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=88.7
Q ss_pred CChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 027158 4 QCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 77 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 77 (227)
+-.+++...+.++.... |.-..+.-.++-++-.. -+|..-..+|.-.....|+ +.+-.+.+.......-...+
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhH
Confidence 34678888888888764 44444444555555433 4677777777777776665 44555666666665556777
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158 78 IEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133 (227)
Q Consensus 78 ~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 133 (227)
+...+..... -......+...|.++.+.|..++|...|++++.+.++.....+...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777766544 1233456778899999999999999999999999888776544443
No 426
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=79.37 E-value=16 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
..++|..+..+|+ .+-.+++++-+
T Consensus 53 CHNLA~FWR~~gd---~~yELkYLqlA 76 (140)
T PF10952_consen 53 CHNLADFWRSQGD---SDYELKYLQLA 76 (140)
T ss_pred HhhHHHHHHHcCC---hHHHHHHHHHH
Confidence 4566666666666 55555555433
No 427
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=78.90 E-value=28 Score=26.99 Aligned_cols=113 Identities=10% Similarity=-0.041 Sum_probs=74.4
Q ss_pred CCCChHHHHHHHHHHHHhCCC--chhhHHHHHHHH---HHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 027158 2 DCQCLDVAKDCIKVLQKQFPE--SKRVGRLEGILL---EAKGL----WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 72 (227)
Q Consensus 2 ~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~---~~~~~----~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 72 (227)
..++|++=...+.+......+ .....+..+... ..... ...-...++.-++..|++..++..+|..+....
T Consensus 12 ~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~A 91 (277)
T PF13226_consen 12 QARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRA 91 (277)
T ss_pred HhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 356777777777777654332 111112222111 11111 123566677778889999999988888776631
Q ss_pred ----------------------ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 027158 73 ----------------------NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 114 (227)
Q Consensus 73 ----------------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 114 (227)
-.+.|...+.++++++|....++..+-.+-...|.+.-=..+
T Consensus 92 w~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 92 WDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred HHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHH
Confidence 267888999999999999999998888888888777644433
No 428
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=78.86 E-value=21 Score=30.75 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 027158 38 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 116 (227)
Q Consensus 38 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 116 (227)
...+.+....+.-+.....+.......+..+-..+..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44555555555555444444555556666666667777777777777776666 566666666777776666666665
No 429
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.80 E-value=5.6 Score=23.98 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=8.4
Q ss_pred cCChHHHHHHHHHHHHH
Q 027158 71 QGNFPTAIEWLNKYLET 87 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~ 87 (227)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34455555555555443
No 430
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=77.70 E-value=6.2 Score=18.80 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~a 118 (227)
|..+..++.+.|+++.|..+|+..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444445555544444443
No 431
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=77.54 E-value=34 Score=27.18 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=66.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHH
Q 027158 34 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 113 (227)
Q Consensus 34 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~ 113 (227)
+...|+...|..+-.. ++. .+...|.....++...++|++-..+... -.+|-.|--...++...|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3456777777665333 333 3567788888888899999876654332 3445566667778888899999988
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 027158 114 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 152 (227)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~ 152 (227)
+..+ + |. ......|...|. +.+|....
T Consensus 259 yI~k---~-~~-----~~rv~~y~~~~~---~~~A~~~A 285 (319)
T PF04840_consen 259 YIPK---I-PD-----EERVEMYLKCGD---YKEAAQEA 285 (319)
T ss_pred HHHh---C-Ch-----HHHHHHHHHCCC---HHHHHHHH
Confidence 8877 1 21 245566778888 88886653
No 432
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=35 Score=27.20 Aligned_cols=99 Identities=13% Similarity=-0.045 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHH
Q 027158 24 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-----D-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDA 94 (227)
Q Consensus 24 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~ 94 (227)
..++...|..|.+.|+-+.|.+.+.+..+..-. + .-....+|..|....-..+.++-.+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 467788888889999999998888877765321 1 1223345555555443444444444444443332 123
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQ 122 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 122 (227)
-..-|...+...+|.+|-.+|-..+...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3455667777888888888888777543
No 433
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=76.78 E-value=5.9 Score=19.89 Aligned_cols=33 Identities=9% Similarity=-0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhc
Q 027158 127 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 159 (227)
Q Consensus 127 ~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~ 159 (227)
.+.+++|.++.+.....+..+.+..++..++..
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 345667777777666555666666666665543
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.16 E-value=6.3 Score=23.77 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=7.7
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|+|++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555554
No 435
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.43 E-value=18 Score=31.93 Aligned_cols=101 Identities=21% Similarity=0.110 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 103 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 103 (227)
-|+..++.+++..|..-|..++.+-|.+ .......+.++.. .|++..++.-..-++...|....+....+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3566777788888877777777776633 3444555555554 568888888888888888888888888888888
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHH
Q 027158 104 SLQMYKQAAFCYEELILSQPTVPLYHL 130 (227)
Q Consensus 104 ~~~~~~~A~~~~~~al~~~p~~~~~~~ 130 (227)
..+.++-|+.-..-.....|.+..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 888888888887777778888855544
No 436
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.93 E-value=22 Score=23.81 Aligned_cols=27 Identities=11% Similarity=-0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 027158 27 GRLEGILLEAKGLWAEAEKAYSSLLED 53 (227)
Q Consensus 27 ~~~~a~~~~~~~~~~~A~~~~~~~l~~ 53 (227)
+.++|...+..+++-.++-+|++++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 456677777777777788777777764
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.38 E-value=47 Score=27.30 Aligned_cols=95 Identities=8% Similarity=-0.046 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--------CCHH
Q 027158 59 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPL 127 (227)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~ 127 (227)
.++..+|..|..-|+++.|+.+|-++...-.+. ...|.++-.+-...|+|..-..+..+|.+... -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 678899999999999999999999976654433 56788888888999999888888888775520 0122
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 027158 128 YHLAYADVLYTLGGVDNILLAKKYYASTI 156 (227)
Q Consensus 128 ~~~~la~~~~~~g~~~~~~~A~~~~~~~~ 156 (227)
....-|.+...+++ +..|..+|-.+.
T Consensus 231 l~C~agLa~L~lkk---yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKK---YKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHhCC
Confidence 44455566666778 999999887664
No 438
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.19 E-value=22 Score=31.51 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=78.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHH--cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 64 RVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVS--LQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 64 l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
-+...+..+++..+.--|..++.+-|.+ .....+.+.+++. .|+|..++.-..-++...|....+++..+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3556677778888877788888777743 4456666766665 578999999999999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHhhhcCCCch
Q 027158 138 TLGGVDNILLAKKYYASTIDLTGGKNT 164 (227)
Q Consensus 138 ~~g~~~~~~~A~~~~~~~~~~~~~~~~ 164 (227)
..+. ++-|++...-.....|. ++
T Consensus 139 al~k---~d~a~rdl~i~~~~~p~-~~ 161 (748)
T KOG4151|consen 139 ALNK---LDLAVRDLRIVEKMDPS-NV 161 (748)
T ss_pred HHHH---HHHHHHHHHHHhcCCCC-cc
Confidence 9999 99999998888888885 53
No 439
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.89 E-value=17 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=6.7
Q ss_pred HcccHHHHHHHHHHHH
Q 027158 104 SLQMYKQAAFCYEELI 119 (227)
Q Consensus 104 ~~~~~~~A~~~~~~al 119 (227)
..|++.+|+.+|++++
T Consensus 18 ~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 18 KEGNAEDAITNYKKAI 33 (75)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3344444444444333
No 440
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=73.82 E-value=45 Score=26.77 Aligned_cols=144 Identities=15% Similarity=-0.017 Sum_probs=85.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-----CCC--HHHHH
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-----MAD--HDAWR 96 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----p~~--~~~~~ 96 (227)
+...|...++|.+|+......++. .+.-..++..-...|....+..+|...+..+.... |.. +..=.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 456778889999999888777664 12234556666778888888888888888776532 111 11222
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCC---CCHHH---HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCCCchhHHHhH
Q 027158 97 ELAEIYVSLQMYKQAAFCYEELILSQP---TVPLY---HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI 170 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (227)
.-|..+....+|..|..+|=+|++-.. .+..+ +..+-.|-...+... --.++-.-+.+++... ....++..+
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~d-dv~~lls~K~~l~y~g-~~i~Amkav 291 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPD-DVAALLSAKLALKYAG-RDIDAMKAV 291 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHhccC-cchHHHHHH
Confidence 336666677899999999999997542 22232 222222333344400 2334444445555444 366666655
Q ss_pred HHHHH
Q 027158 171 CLCSS 175 (227)
Q Consensus 171 ~~~~~ 175 (227)
+-++.
T Consensus 292 AeA~~ 296 (411)
T KOG1463|consen 292 AEAFG 296 (411)
T ss_pred HHHhc
Confidence 55544
No 441
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.51 E-value=19 Score=30.19 Aligned_cols=48 Identities=25% Similarity=0.145 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
-...+|.-.+..|+|..+.++..+++-.+|.+..+....|.++.++|-
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgY 501 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGY 501 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhh
Confidence 345788888899999999999999999999999999999999999884
No 442
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.21 E-value=66 Score=28.44 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 027158 29 LEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 104 (227)
Q Consensus 29 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 104 (227)
.++.......+.+.|...+.+.....+-+. .++..++.-....+..++|..++..+.... .+...+-....+...
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHH
Confidence 344445566777888888887655443222 333444433333333667777777655332 233333333445558
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 027158 105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 157 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~ 157 (227)
.++++....++...-....+.....+-+|.++...|+ .++|...|+++..
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~---~~~A~~~~~~~a~ 374 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGR---KAEAEEILRQLMQ 374 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 8899888777777544334567788999999888999 9999999999754
No 443
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=72.80 E-value=9.8 Score=18.69 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHc
Q 027158 75 PTAIEWLNKYLETF 88 (227)
Q Consensus 75 ~~A~~~~~~~l~~~ 88 (227)
+.|..+|++.+...
T Consensus 4 dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 4 DRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444444
No 444
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.31 E-value=12 Score=22.47 Aligned_cols=14 Identities=14% Similarity=-0.076 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|++++|+.+|..++
T Consensus 20 g~y~eA~~lY~~al 33 (75)
T cd02684 20 GDAAAALSLYCSAL 33 (75)
T ss_pred ccHHHHHHHHHHHH
Confidence 44555544444444
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.17 E-value=35 Score=24.75 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 027158 31 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 65 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 65 (227)
..++...|.+++|.+.+++... +|++......|.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 3455556666666666666665 555444333333
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.14 E-value=27 Score=23.42 Aligned_cols=45 Identities=18% Similarity=0.019 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 75 PTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 75 ~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
+.+...|..+.. +....+..|...|..+...|++++|...|+.++
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 377777777665 345668888999999999999999999998775
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.03 E-value=27 Score=23.49 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHH
Q 027158 33 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 112 (227)
Q Consensus 33 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 112 (227)
.+...+.....+.+++.++..++.++..+..++.++...+ ..+.+.++.. .++. --.-..+.++...+-+++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~-yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNH-YDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----cccc-CCHHHHHHHHHHcCcHHHHH
Confidence 3344577888888888888887777788888888887653 4455555552 1111 11122334444555566665
Q ss_pred HHHHH
Q 027158 113 FCYEE 117 (227)
Q Consensus 113 ~~~~~ 117 (227)
..+.+
T Consensus 90 ~l~~k 94 (140)
T smart00299 90 ELYKK 94 (140)
T ss_pred HHHHh
Confidence 55544
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.45 E-value=36 Score=24.58 Aligned_cols=50 Identities=24% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 108 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
.+..++..++.+...| ++..+.+++.++...|+ .++|.....++...-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGD---PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCc
Confidence 3455667777777777 57788888999999999 99999999999999984
No 449
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.15 E-value=15 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=6.7
Q ss_pred cccHHHHHHHHHHHH
Q 027158 105 LQMYKQAAFCYEELI 119 (227)
Q Consensus 105 ~~~~~~A~~~~~~al 119 (227)
.|++++|+.+|.+++
T Consensus 18 ~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 18 AGNYEEALELYKEAI 32 (69)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 344444444444443
No 450
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=69.91 E-value=12 Score=30.39 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---------CcHHHHHHHHHHHhhhcCC
Q 027158 106 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---------DNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 106 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---------~~~~~A~~~~~~~~~~~~~ 161 (227)
.-...|+.++++|.. .++|..|..+|.++..+|+. .-|.+|...+.+|-....+
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~G 394 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNG 394 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 446778888888765 45677788888888777762 1277888888888776543
No 451
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.25 E-value=28 Score=22.53 Aligned_cols=48 Identities=13% Similarity=-0.075 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 94 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 94 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
....-|.+....|++..|.+...++-+..+..+..+..-|.+-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556666667777777777777766555444445544555555543
No 452
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=68.82 E-value=12 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027158 145 ILLAKKYYAST 155 (227)
Q Consensus 145 ~~~A~~~~~~~ 155 (227)
..+|..+|+++
T Consensus 21 ~~~A~~~~~~A 31 (36)
T smart00671 21 LEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 453
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.20 E-value=17 Score=21.97 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=10.0
Q ss_pred HcccHHHHHHHHHHHHh
Q 027158 104 SLQMYKQAAFCYEELIL 120 (227)
Q Consensus 104 ~~~~~~~A~~~~~~al~ 120 (227)
..|+|++|+.+|..++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44666666666666553
No 454
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=68.14 E-value=17 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=15.9
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 97 ELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
.+|..+...|++++|...|-+|+...|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555555556666666666666655554
No 455
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=67.89 E-value=22 Score=31.05 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158 66 AIAKAQGNFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 66 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 118 (227)
.++...++|++|...-++ .|.. ++.++..|..+....+|++|...|.+|
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 345556777777666554 3433 345666666666777777766655544
No 456
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=67.80 E-value=14 Score=18.32 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 027158 145 ILLAKKYYASTI 156 (227)
Q Consensus 145 ~~~A~~~~~~~~ 156 (227)
.++|+.+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 344444444443
No 457
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=67.57 E-value=38 Score=29.78 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 027158 98 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 155 (227)
Q Consensus 98 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~ 155 (227)
+-+.....++|++|....++--+.- +.+++..|..+....+ |++|...|.++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkA 830 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKA 830 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHh
Confidence 3445566789999987766543333 3345555665555555 66655555544
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.16 E-value=19 Score=23.13 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 027158 92 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 126 (227)
Q Consensus 92 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 126 (227)
|..+-.||.+|.+.|+.+.|..-|+.--.+.|.+.
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 34445555555555555555555555545555443
No 459
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=65.71 E-value=20 Score=23.90 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 027158 30 EGILLEAKGLWAEAEKAYSSLLEDNPL 56 (227)
Q Consensus 30 ~a~~~~~~~~~~~A~~~~~~~l~~~p~ 56 (227)
+|..+...|++++|..+|-+++...|.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444445555555555555555555443
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=65.10 E-value=18 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=12.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 027158 31 GILLEAKGLWAEAEKAYSSLLE 52 (227)
Q Consensus 31 a~~~~~~~~~~~A~~~~~~~l~ 52 (227)
|.-+-..|++++|+.+|.+++.
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455666666666665554
No 461
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=63.51 E-value=42 Score=22.50 Aligned_cols=63 Identities=5% Similarity=-0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 027158 60 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 122 (227)
Q Consensus 60 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 122 (227)
.+..+..++.+.|+.+....++++...++.+. ......+..+|...|++..|+.+.....+..
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555556666666666665555443221 2344444455555555555555555544443
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.94 E-value=77 Score=24.97 Aligned_cols=135 Identities=10% Similarity=-0.088 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHH
Q 027158 3 CQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKA 70 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~ 70 (227)
.+..++-++-+++.++....+. .++..+|..|.+.++.+.+.+...+.++. .-+-.-....+|.+|-.
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Q ss_pred cCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 027158 71 QGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 137 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 137 (227)
..-..+.++.....++...+. -..-...|...+...+|.+|-.++-..+.........-+.-+.-|.
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
No 463
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=61.13 E-value=23 Score=18.63 Aligned_cols=29 Identities=10% Similarity=-0.110 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccHH
Q 027158 81 LNKYLETFMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 81 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~ 109 (227)
|..++..+|++...+...|..+...|+..
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ 33 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPA 33 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence 34444455555555555555555555553
No 464
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.95 E-value=22 Score=21.66 Aligned_cols=14 Identities=21% Similarity=0.078 Sum_probs=5.7
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|+.++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444444433
No 465
>PF15469 Sec5: Exocyst complex component Sec5
Probab=60.66 E-value=58 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=17.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 027158 34 LEAKGLWAEAEKAYSSLLEDN 54 (227)
Q Consensus 34 ~~~~~~~~~A~~~~~~~l~~~ 54 (227)
+...|+|+.++..|.++....
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHH
Confidence 356799999999999988764
No 466
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=60.50 E-value=78 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 74 FPTAIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 74 ~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
-..++.+|++++.. +..+...|..+|..+++.++|.+|+..+-.+-
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 34456666666653 22344566677777777777777777766654
No 467
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.88 E-value=1.3e+02 Score=26.77 Aligned_cols=31 Identities=13% Similarity=-0.162 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 027158 89 MADHDAWRELAEIYVSLQMYKQAAFCYEELI 119 (227)
Q Consensus 89 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 119 (227)
|.+....+.++......|+-++|.....++-
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555666666666666555555555544
No 468
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.67 E-value=89 Score=24.96 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHH--HHHHcCCCHHHHH
Q 027158 26 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVLHKRRVAIAKAQGNFPTAIEWLNK--YLETFMADHDAWR 96 (227)
Q Consensus 26 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~--~l~~~p~~~~~~~ 96 (227)
....++.+|...++|..|-..+.-.=...... ...+..+|..|...++..+|..+.++ .+..+..+.....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Q ss_pred HHHHHHHHc----ccHHHHHHHHHHHHh
Q 027158 97 ELAEIYVSL----QMYKQAAFCYEELIL 120 (227)
Q Consensus 97 ~la~~~~~~----~~~~~A~~~~~~al~ 120 (227)
.+-.||.+. ++|-+|...|-+...
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=59.64 E-value=51 Score=22.14 Aligned_cols=44 Identities=9% Similarity=-0.131 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 027158 4 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS 48 (227)
Q Consensus 4 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 48 (227)
+.......+++.++..++.++..+..+..++... +....+.++.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 4455566666666665555555555555555432 2333444433
No 470
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=58.79 E-value=25 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHhHHHHHHHHHhhh
Q 027158 145 ILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 181 (227)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (227)
+..|+.+++++..- ..+..|..++-++..+++..
T Consensus 334 ~~~Al~yL~kA~d~---ddPetWv~vAEa~I~LGNL~ 367 (404)
T PF12753_consen 334 IKKALEYLKKAQDE---DDPETWVDVAEAMIDLGNLY 367 (404)
T ss_dssp HHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcc---CChhHHHHHHHHHhhhhccc
Confidence 88899999988773 25667788888888877744
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.97 E-value=40 Score=27.01 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 027158 41 AEAEKAYSSLLEDNPL---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 90 (227)
Q Consensus 41 ~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 90 (227)
++....+..++..-|+ .+..|..++.+.-..|.++..+.+|++|+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 4566666666666664 2466777777777778777788888888776654
No 472
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=57.83 E-value=72 Score=23.30 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 027158 39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-------NFPTAIEWLNKYLETFMADHDAWRELAEIY 102 (227)
Q Consensus 39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 102 (227)
+...|++.+..+-. .+++.+...+|.++..-. +..+|..++.++.++ ++..+.+.|...|
T Consensus 88 ~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 88 SLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMY 154 (248)
T ss_pred CHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHH
Confidence 44455555444443 334444444444443311 244555555554432 2334444444444
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.34 E-value=1.6e+02 Score=26.82 Aligned_cols=147 Identities=13% Similarity=0.001 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHH
Q 027158 9 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYL 85 (227)
Q Consensus 9 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~l 85 (227)
-+..++.-+..++.+...+..+-.+++..|++++-...-..+-+..|..+..|.....-... .+...++...|++++
T Consensus 98 ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal 177 (881)
T KOG0128|consen 98 EIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL 177 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh
Confidence 34455555566677777777888888999999988888888888889888888777663332 367788888999988
Q ss_pred HHcCCCHHHHHHHHHHHHH-------cccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHH
Q 027158 86 ETFMADHDAWRELAEIYVS-------LQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKY 151 (227)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~ 151 (227)
. +-.++..|...+..... .++++.....|.+++..-... ...+..+-.++...-. .+.-+.+
T Consensus 178 ~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~---~~qv~a~ 253 (881)
T KOG0128|consen 178 G-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE---QRQVIAL 253 (881)
T ss_pred c-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH---HHHHHHH
Confidence 5 44667777776665544 366888899999998643322 2334444444444444 4556666
Q ss_pred HHHHhhhc
Q 027158 152 YASTIDLT 159 (227)
Q Consensus 152 ~~~~~~~~ 159 (227)
+...+...
T Consensus 254 ~~~el~~~ 261 (881)
T KOG0128|consen 254 FVRELKQP 261 (881)
T ss_pred HHHHHhcc
Confidence 66666553
No 474
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.30 E-value=93 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.044 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCCCcHHH
Q 027158 73 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPLYHLAYADVLYTLGGVDNILL 147 (227)
Q Consensus 73 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~~~~ 147 (227)
+|.-|+..+-..-+++|.. .-..++.+|.+|+.. +..+...+..+|..+++.++ +.+
T Consensus 275 ~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~---~~e 336 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKR---YRE 336 (618)
T ss_dssp T-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT----HHH
T ss_pred hCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHH---HHH
Confidence 3455555555555555542 234456677777743 23455667888999999999 999
Q ss_pred HHHHHHHHhhhc
Q 027158 148 AKKYYASTIDLT 159 (227)
Q Consensus 148 A~~~~~~~~~~~ 159 (227)
|+..+..+-+.-
T Consensus 337 A~~~Wa~aa~Vi 348 (618)
T PF05053_consen 337 ALRSWAEAADVI 348 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998886653
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.50 E-value=1.1e+02 Score=24.61 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH---HH
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---LY 128 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 128 (227)
..++...+..|++.|+-+.|.+.+.+..+..-.- .-....+|..|....-..+.++-....++..-+-. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 4789999999999999999999999877653221 22456778888777666666666666555443211 12
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhhcCC
Q 027158 129 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 161 (227)
Q Consensus 129 ~~~la~~~~~~g~~~~~~~A~~~~~~~~~~~~~ 161 (227)
...-|.......+ |.+|-..|-.++..-..
T Consensus 184 KvY~Gly~msvR~---Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRN---FKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHcccccc
Confidence 2233444455667 88998888888766543
No 476
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=55.42 E-value=1.2e+02 Score=25.27 Aligned_cols=119 Identities=21% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--Hc
Q 027158 14 KVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLE--TF 88 (227)
Q Consensus 14 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~ 88 (227)
++.....|-++--.-..........+.+.+..++.+.-...-.. +.....+...+...|..++++..++.=+. ++
T Consensus 56 ~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF 135 (429)
T PF10037_consen 56 KKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF 135 (429)
T ss_pred HHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 027158 89 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 133 (227)
Q Consensus 89 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 133 (227)
| |...++.|-+.++..|+|..|.......+...-.+......|+
T Consensus 136 ~-D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~ 179 (429)
T PF10037_consen 136 P-DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALA 179 (429)
T ss_pred C-ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHH
No 477
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.42 E-value=54 Score=21.14 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHH
Q 027158 58 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 95 (227)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 95 (227)
+..+..+|.+|.+.|+.+.|..-|+.--.++|++....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 45666778888888888888888877777777775543
No 478
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.27 E-value=1.7e+02 Score=26.77 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHcccHH
Q 027158 32 ILLEAKGLWAEAEKAYSSLLEDNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYK 109 (227)
Q Consensus 32 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~ 109 (227)
..+....-|.-|+...+.-- .+++. ..++...|..++..|++++|+..|-+.+.. +|... ..-|.......
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHHH
Confidence 34455566777776554422 23332 367788899999999999999999988753 22211 11112223333
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 027158 110 QAAFCYEELILSQPTVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 141 (227)
+-..+++...+..-.+..-...|-.+|.++++
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence 34444454444333333333344566666666
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.41 E-value=1.2e+02 Score=24.85 Aligned_cols=121 Identities=11% Similarity=-0.104 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchh-------hHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHc
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKR-------VGRLEGILLEAKGLWAEAEKAYS--SLLEDNPLDPVLHKRRVAIAKAQ 71 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~l~~~~~~~ 71 (227)
+..++|..|..+|..+....++... .....|..++..-++++|.+.++ ..-.........+..+-.+....
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELEDVIKRN 220 (380)
T ss_pred HHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHHHHHHhH
Q ss_pred CChHHHHHH---HHHHHHHcCCCHHHHHHHHHHHH--HcccHHHHHHHHHHHHhh
Q 027158 72 GNFPTAIEW---LNKYLETFMADHDAWRELAEIYV--SLQMYKQAAFCYEELILS 121 (227)
Q Consensus 72 ~~~~~A~~~---~~~~l~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~ 121 (227)
......... ....-...|..+-....+.++.. .+|+|+.|+..+-+++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 221 ASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.33 E-value=1.9e+02 Score=26.79 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=14.8
Q ss_pred CCChHHHHHHHHHHHHhCC
Q 027158 3 CQCLDVAKDCIKVLQKQFP 21 (227)
Q Consensus 3 ~~~~~~A~~~~~~~~~~~p 21 (227)
.|++.+|++.|+.++-.-|
T Consensus 1004 ~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 1004 EGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred cCcHHHHHHHHHHHHhhee
Confidence 5778888888888877665
No 481
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=53.27 E-value=1.1e+02 Score=24.12 Aligned_cols=119 Identities=17% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------------
Q 027158 1 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------------------------- 53 (227)
Q Consensus 1 l~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------------------------- 53 (227)
+..+++.+.+..+++.+..+|-..+.+++.+.++.+.| ++.+.......+..
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~W 188 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAW 188 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHH
Q ss_pred -----CC---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHH
Q 027158 54 -----NP---------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQ 110 (227)
Q Consensus 54 -----~p---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~ 110 (227)
.+ .+......-+......|..+.|+..++..+...++. ......++.++...|.++-
T Consensus 189 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~l 268 (301)
T TIGR03362 189 LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAEL 268 (301)
T ss_pred HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHh
Q 027158 111 AAFCYEELIL 120 (227)
Q Consensus 111 A~~~~~~al~ 120 (227)
|...|+...+
T Consensus 269 A~~ll~~L~~ 278 (301)
T TIGR03362 269 AQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHH
No 482
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.24 E-value=42 Score=19.23 Aligned_cols=22 Identities=23% Similarity=0.236 Sum_probs=8.8
Q ss_pred HHHHHHHHcccHHHHHHHHHHH
Q 027158 97 ELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 97 ~la~~~~~~~~~~~A~~~~~~a 118 (227)
.....+...|++++|.++....
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3333344444444444444433
No 483
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=52.75 E-value=44 Score=19.87 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=5.9
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|++++|+.+|..++
T Consensus 22 g~~~eAl~~Y~~a~ 35 (77)
T smart00745 22 GDYEEALELYKKAI 35 (77)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444333
No 484
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.14 E-value=65 Score=21.10 Aligned_cols=74 Identities=15% Similarity=0.021 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 027158 39 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 117 (227)
Q Consensus 39 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 117 (227)
..++|..++.=.-........+...+...+.+.|+|++| +... .....|+.-..++.+-.+.|--+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~--~~~~~pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLP--QCHCYPDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHH--TTS--GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhc--ccCCCccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345554444332222222233344555566677777766 1111 1223344444555566666666666666654
No 485
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=52.02 E-value=73 Score=21.64 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=13.0
Q ss_pred cCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 027158 71 QGNFPTAIEWLNKYLETFMADHDAWRELA 99 (227)
Q Consensus 71 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la 99 (227)
.-+.+.|..+|+.+++.+|++..++..+.
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 33445555555555555555555444443
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=51.85 E-value=64 Score=25.93 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 027158 74 FPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLY 137 (227)
Q Consensus 74 ~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 137 (227)
.++....+...+..-|+- +..|.-+|.+.-..|.++..+.+|++|+.....-. .....+..++.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 446666777777777753 56788888888888888888888888887765532 23344445544
No 487
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.59 E-value=92 Score=22.67 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCCHHH
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMADHDA 94 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 94 (227)
+++..|.+++|.+.+++... +|++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 55556666666666666655 5554443
No 488
>PF15469 Sec5: Exocyst complex component Sec5
Probab=50.75 E-value=90 Score=22.30 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCC
Q 027158 67 IAKAQGNFPTAIEWLNKYLETFMAD 91 (227)
Q Consensus 67 ~~~~~~~~~~A~~~~~~~l~~~p~~ 91 (227)
-+...|+|+.++..|.++..+....
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999998876443
No 489
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=50.37 E-value=67 Score=20.74 Aligned_cols=45 Identities=20% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Q 027158 62 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 106 (227)
Q Consensus 62 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 106 (227)
...|.+-...|++..|.+.+.++-+..+..+-.+..-+.....+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344556666777777777777776554443444444455444444
No 490
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=50.23 E-value=1.5e+02 Score=24.61 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhhcC
Q 027158 133 ADVLYTLGGVDNILLAKKYYASTIDLTG 160 (227)
Q Consensus 133 a~~~~~~g~~~~~~~A~~~~~~~~~~~~ 160 (227)
|.-|...|+ ...|...|..++..-.
T Consensus 377 g~~~~~~~~---~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 377 GHRYSKAGQ---KKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHhC
Confidence 456677777 8888888888877654
No 491
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.40 E-value=58 Score=19.41 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=5.8
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|++++|+.+|..++
T Consensus 20 g~y~eA~~~Y~~ai 33 (75)
T cd02678 20 GNYEEALRLYQHAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444443333
No 492
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.01 E-value=58 Score=19.29 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.2
Q ss_pred ccHHHHHHHHHHHH
Q 027158 106 QMYKQAAFCYEELI 119 (227)
Q Consensus 106 ~~~~~A~~~~~~al 119 (227)
|++++|+.+|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 493
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.13 E-value=6.7 Score=33.54 Aligned_cols=90 Identities=22% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH--HHHcCC-CHHHHHHH
Q 027158 25 RVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKY--LETFMA-DHDAWREL 98 (227)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~--l~~~p~-~~~~~~~l 98 (227)
.....-+..+...|++..|...+.+.-. +.|.. .......+.+....|+++.|+..+... ..+.+. ....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 3344445666666777777666665552 22222 233344555666666666666666531 111111 12233444
Q ss_pred HHHHHHcccHHHHHHH
Q 027158 99 AEIYVSLQMYKQAAFC 114 (227)
Q Consensus 99 a~~~~~~~~~~~A~~~ 114 (227)
+.++...|++-+|...
T Consensus 105 A~a~~~~~~~l~Aa~~ 120 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARE 120 (536)
T ss_dssp ----------------
T ss_pred HHHHHhcCCHHHHHHH
Confidence 5555555555555443
No 494
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=45.81 E-value=94 Score=21.13 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027158 105 LQMYKQAAFCYEELILSQPTVPLYHLAYADVL 136 (227)
Q Consensus 105 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 136 (227)
.-+.+.|..+|++++...|++..++..+...+
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 33445566666666666666655555554433
No 495
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=45.42 E-value=1.4e+02 Score=22.84 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhh
Q 027158 108 YKQAAFCYEELIL-----SQPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 108 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~~~~~ 158 (227)
.+.|...|+.|+. +.|.+|. ..++.+..|+. +++ .++|....+++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~---~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNS---PDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 4578888988885 4567764 34555555554 577 88888776666654
No 496
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=45.29 E-value=1e+02 Score=25.12 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH-cCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 027158 62 KRRVAIAKAQGNFPTAIEWLNKYLET-FMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 124 (227)
Q Consensus 62 ~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 124 (227)
+.+-.+|.+.++++-+...++..-.. .|+. ....+.+|.+|..+.++.+|...+..|+...|.
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 34556888899988776666553321 1222 236789999999999999999999999988876
No 497
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.28 E-value=54 Score=26.52 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCC
Q 027158 95 WRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPLYHLAYADVLYTLGG 141 (227)
Q Consensus 95 ~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~ 141 (227)
....|.-.+.+++++.|...|..|..+.. .+..+++.+|.+++..++
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~ 98 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAK 98 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666664432 223456666666666655
No 498
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.24 E-value=66 Score=22.34 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=20.2
Q ss_pred HHHHHHHHHcc-cHHHHHHHHHHHHhhCCCC
Q 027158 96 RELAEIYVSLQ-MYKQAAFCYEELILSQPTV 125 (227)
Q Consensus 96 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~~ 125 (227)
..+|..+...| +.+++...|-+|+...|+-
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 35666777776 6777777777777766653
No 499
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.14 E-value=2e+02 Score=24.74 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 027158 41 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEEL 118 (227)
Q Consensus 41 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 118 (227)
+...+.+.......|.++.-....+.++...|+.+.|+..++..+...-. ..-.++.+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555666668888877778888888888888888888877661111 1346678888888888999998888888
Q ss_pred HhhCCCCHHHHHHHH
Q 027158 119 ILSQPTVPLYHLAYA 133 (227)
Q Consensus 119 l~~~p~~~~~~~~la 133 (227)
...+.=+.-.+..++
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 766543333333333
No 500
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.36 E-value=1.8e+02 Score=24.05 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHH-------HHHHHHHHccc--------------HHHHHHHHHHHH
Q 027158 61 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR-------ELAEIYVSLQM--------------YKQAAFCYEELI 119 (227)
Q Consensus 61 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-------~la~~~~~~~~--------------~~~A~~~~~~al 119 (227)
...+|.+.+..|+|+-|...|+.+..-+-++ .+|. ..|.+.+..+. ++.|...|.++-
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4567788888888888888888777654333 2333 23333333331 233333444321
Q ss_pred ----hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhh
Q 027158 120 ----LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 158 (227)
Q Consensus 120 ----~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~~~~~ 158 (227)
........+....+.++...|. +.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~---~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGG---YWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHH
Confidence 1111223456666677777777 77777766666555
Done!