Query 027159
Match_columns 227
No_of_seqs 213 out of 1178
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 1.4E-45 3E-50 319.0 16.0 208 12-227 2-223 (423)
2 TIGR03520 GldE gliding motilit 100.0 5.3E-44 1.2E-48 323.0 22.9 198 20-227 2-214 (408)
3 PRK11573 hypothetical protein; 100.0 1.1E-43 2.5E-48 321.1 21.8 195 23-227 2-210 (413)
4 COG1253 TlyC Hemolysins and re 100.0 2.4E-39 5.2E-44 294.7 22.0 206 12-226 3-228 (429)
5 PF01595 DUF21: Domain of unkn 100.0 2.9E-32 6.3E-37 220.9 21.7 169 15-191 2-183 (183)
6 KOG2118 Predicted membrane pro 99.8 2.8E-22 6E-27 184.7 0.9 222 3-226 3-226 (498)
7 PRK15094 magnesium/cobalt effl 99.2 1.5E-11 3.3E-16 107.0 5.1 68 153-227 23-90 (292)
8 COG4535 CorC Putative Mg2+ and 98.9 5.7E-10 1.2E-14 92.5 3.5 72 149-227 19-90 (293)
9 TIGR00400 mgtE Mg2+ transporte 96.7 0.0011 2.4E-08 61.2 2.9 57 164-226 89-151 (449)
10 TIGR01302 IMP_dehydrog inosine 92.1 0.13 2.9E-06 47.6 3.3 53 163-226 43-100 (450)
11 COG3448 CBS-domain-containing 70.8 58 0.0013 28.8 9.8 58 164-227 202-266 (382)
12 PRK05567 inosine 5'-monophosph 65.8 6.6 0.00014 36.7 3.5 53 163-226 50-107 (486)
13 PF15086 UPF0542: Uncharacteri 59.6 35 0.00075 23.4 5.1 28 4-31 13-42 (74)
14 PLN03207 stomagen; Provisional 57.9 14 0.00029 26.9 3.1 34 1-34 1-34 (113)
15 PF03563 Bunya_G2: Bunyavirus 56.1 51 0.0011 28.4 6.7 41 103-157 194-234 (285)
16 PF11131 PhrC_PhrF: Rap-phr ex 51.0 15 0.00032 21.6 1.9 18 18-35 5-22 (37)
17 PF00571 CBS: CBS domain CBS d 50.9 3.8 8.3E-05 25.6 -0.6 19 206-226 1-19 (57)
18 cd07178 terB_like_YebE telluri 49.7 20 0.00043 25.7 3.0 16 185-200 14-29 (95)
19 PF02419 PsbL: PsbL protein; 46.3 41 0.0009 19.8 3.3 26 3-29 10-35 (37)
20 CHL00038 psbL photosystem II p 42.0 36 0.00077 20.1 2.6 18 12-29 19-36 (38)
21 PRK13664 hypothetical protein; 40.9 40 0.00086 22.0 2.9 19 10-28 6-24 (62)
22 PF04391 DUF533: Protein of un 36.0 40 0.00086 27.5 3.0 28 169-200 82-109 (188)
23 PF15284 PAGK: Phage-encoded v 35.3 57 0.0012 21.5 3.1 22 15-36 6-27 (61)
24 PF14163 SieB: Superinfection 34.1 2.2E+02 0.0047 21.9 7.4 16 187-202 79-94 (151)
25 PRK00753 psbL photosystem II r 30.1 62 0.0013 19.2 2.3 18 12-29 20-37 (39)
26 PF11305 DUF3107: Protein of u 29.5 29 0.00063 23.9 1.1 48 163-224 18-65 (74)
27 PF08899 DUF1844: Domain of un 29.1 83 0.0018 21.7 3.2 16 184-199 52-67 (74)
28 TIGR01669 phage_XkdX phage unc 28.9 69 0.0015 19.7 2.6 26 164-197 17-42 (45)
29 PF01169 UPF0016: Uncharacteri 28.4 1.9E+02 0.0042 19.8 5.1 34 98-135 40-73 (78)
30 PF14316 DUF4381: Domain of un 28.1 2.6E+02 0.0055 21.4 6.4 16 9-24 20-35 (146)
31 PF09693 Phage_XkdX: Phage unc 27.3 68 0.0015 19.1 2.3 26 164-197 12-37 (40)
32 KOG0028 Ca2+-binding protein ( 26.1 76 0.0017 25.4 3.0 28 163-192 137-164 (172)
33 PF14237 DUF4339: Domain of un 25.7 58 0.0013 19.6 1.9 15 162-176 11-25 (45)
34 PF04545 Sigma70_r4: Sigma-70, 24.1 65 0.0014 19.6 1.9 23 186-209 4-26 (50)
35 PF11742 DUF3302: Protein of u 22.2 2.8E+02 0.0061 19.3 7.0 43 109-151 20-65 (78)
36 COG2239 MgtE Mg/Co/Ni transpor 21.7 1.1E+02 0.0023 28.6 3.5 40 186-227 114-153 (451)
37 PF13980 UPF0370: Uncharacteri 21.6 1.2E+02 0.0027 19.9 2.8 17 11-28 7-23 (63)
38 PF06348 DUF1059: Protein of u 21.2 1.9E+02 0.0041 18.6 3.7 35 165-199 20-54 (57)
39 COG4109 Predicted transcriptio 21.2 27 0.0006 31.5 -0.4 37 191-227 170-211 (432)
40 PRK10892 D-arabinose 5-phospha 21.0 32 0.00068 30.1 -0.1 26 202-227 200-225 (326)
41 PRK07107 inosine 5-monophospha 20.2 39 0.00084 31.9 0.4 26 201-226 158-183 (502)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=319.05 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHhhHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 027159 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (227)
Q Consensus 12 ~~~~i~~~~~ll~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~ 91 (227)
.|..++.+++++++||||||+|+|++++||.|+++++++|+++ |+++.+++++|+++++++++|||++|+..+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999987 889999999999999999999999998765443
Q ss_pred h----HHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HhcCC-
Q 027159 92 D----GLV---SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHG- 160 (227)
Q Consensus 92 ~----~~~---~~~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~---l~g~~- 160 (227)
. .++ |..+|+.++|+++++|+|++||++|..|||++++..++++..+.++|+|++|+++++++. ++|.+
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 2 233 345788899999999999999999999999999999999999999999999999999875 46764
Q ss_pred ---CcccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 161 ---RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 161 ---~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+...|.||+|.+++.+ +.+|...+++++|+-|++|+++.+|+||||||++|.++|.|++.++
T Consensus 158 ~~~~~~~~s~EElR~~v~~~----~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~ 223 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNES----GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEE 223 (423)
T ss_pred ccccccccCHHHHHHHHHHh----hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHH
Confidence 24568999999999964 4458888889999999999999999999999999999999998753
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=5.3e-44 Score=323.05 Aligned_cols=198 Identities=23% Similarity=0.430 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHhhHHhchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 027159 20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV 95 (227)
Q Consensus 20 ~~ll~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~ 95 (227)
++|+++||||||+|+|++|+++.|+++++++|+++ |++++++++||+++++|+|+|||++|++.+.++. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~----a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKK----EQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999865 7789999999999999999999999987654322 222
Q ss_pred H--------HHHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 027159 96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL 164 (227)
Q Consensus 96 ~--------~~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l---~g~~~~~~ 164 (227)
+ ..++++++|+++++|||++||++|.+||++++++.++|+++++++++|++|+++++++.+ +|.++ +.
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 1 224466778899999999999999999999999999999999999999999999988765 45443 45
Q ss_pred ccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 165 ~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
+|+|||+.+++.+ +++| ++++|++||+|+|+|+|++|+||||||+||++++.++|++|
T Consensus 157 ~t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e 214 (408)
T TIGR03520 157 ISVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSE 214 (408)
T ss_pred CCHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHH
Confidence 8999999999853 3446 68999999999999999999999999999999999999764
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=321.07 Aligned_cols=195 Identities=21% Similarity=0.353 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHhhHHhchhHHHHHHHHHHHHHHHHHHHHHh----HHH---
Q 027159 23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV--- 95 (227)
Q Consensus 23 l~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~--- 95 (227)
+++||||||+|+|++|+++.|+++++++|+++ |++++++++||+++++|+|+|||++|++.+.+.. ..+
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999875 7789999999999999999999999876654322 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC----cccccHH
Q 027159 96 SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR----VALFRRA 168 (227)
Q Consensus 96 ~~~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l---~g~~~----~~~~s~e 168 (227)
+.+++++++|+++++|||++||++|.+||++++++.++|+++++++++|++|+++++++.+ +|.++ ++.+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 2445677889999999999999999999999999999999999999999999999987754 56543 2468999
Q ss_pred HHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 169 El~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
||+.+++.+ . +.++++|++|++|+|+|+|++|+||||||+||+++|.++|++|
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e 210 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKS 210 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHH
Confidence 999999853 2 3599999999999999999999999999999999999998764
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=294.69 Aligned_cols=206 Identities=23% Similarity=0.411 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHhhHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 027159 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (227)
Q Consensus 12 ~~~~i~~~~~ll~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~ 91 (227)
.+..++++++|+++|||||++|+|+++++|.|+++++++|+++ |..++++.++|+++++++|+|+|+++...+..+
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999999999999999999998876 778999999999999999999999987665443
Q ss_pred hHHH----HHH---------HHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 027159 92 DGLV----SAW---------GAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL- 157 (227)
Q Consensus 92 ~~~~----~~~---------~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~- 157 (227)
...+ ..+ ..+++.|+++++|||++||++|+++|++++++.++++++++++++|++|+++++++.++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 111 11467789999999999999999999999999999999999999999999999988754
Q ss_pred --cCC----CcccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 158 --GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 158 --g~~----~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
|.+ .+...+++|++ +++. +.++|.++++|++||+|+|+|++++|+||||||+||+++|.+++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~ 228 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVSE----SAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE 228 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHHh----HHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH
Confidence 443 23356778888 7763 5677999999999999999999999999999999999999988865
No 5
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=100.00 E-value=2.9e-32 Score=220.90 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHhhHHhchhHHHHHHHHHHHHHHHHHHHHHh--
Q 027159 15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD-- 92 (227)
Q Consensus 15 ~i~~~~~ll~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~-- 92 (227)
++++++++++++|+||++|+|+.++++.+++++.++|+++ ++++.++++||+++++|+++||+++++..+.++.
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~----a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKR----ARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999998865 7789999999999999999999999877654332
Q ss_pred --HH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---cCC--C
Q 027159 93 --GL----VSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHG--R 161 (227)
Q Consensus 93 --~~----~~~~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~---g~~--~ 161 (227)
+. .+.+++.++.++++++|||++||.+|++||++++.+.+|++++++++++|++++++++.+.+. |.+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 22 234556777889999999999999999999999999999999999999999999999987654 444 3
Q ss_pred cccccHHHHHHHHHHhccccCCCCCCChhH
Q 027159 162 VALFRRAELKTLVNLHGNEAGKGGELTHDE 191 (227)
Q Consensus 162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E 191 (227)
++.+|+|||+.+++. ++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~~----~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVEE----GEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHHh----HHHCCCCCCCC
Confidence 568999999999995 45679999887
No 6
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.84 E-value=2.8e-22 Score=184.68 Aligned_cols=222 Identities=55% Similarity=0.861 Sum_probs=195.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-HHHHHhhHHhchhHHHHHHHHHHH
Q 027159 3 VEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNA 81 (227)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~ll~~sa~fs~~E~Al~s~~~~~l~~l~~~g~~~~~~-~a~~~~~l~~~~~~~l~t~lig~~ 81 (227)
.+.+|++..++...-++.+++++++++||.+.++.+.+-..++.+.+.|+.++++ .++.+....++.+.++++++++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 4567888888887777888999999999999999999999999999999888765 566777788888999999999999
Q ss_pred HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027159 82 AAMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHG 160 (227)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~g~~ 160 (227)
+++.+ +..++....+.|.++.+.+..++.|||++|++++.++.-.+.....++.+++.++++|+.|++++. +..+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 98877 666666655567888888999999999999999999999999999999999999999999999988 7777766
Q ss_pred CcccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 161 RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 161 ~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
-+...-+.++..++..++.|+.+ |.+..+|..+|.++.++.++.++|||||-.++++++.|..++
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~ 226 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLD 226 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccc
Confidence 55566678899999888777655 899999999999999999999999999999999999998765
No 7
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.20 E-value=1.5e-11 Score=106.97 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=58.8
Q ss_pred HHHHhcCCCcccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 153 LDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 153 ~~~l~g~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
..+++|.++ .|+|||+.+++. +.++|.++++|++||+|+|+|++++|+|||+||+++++++.++|++|
T Consensus 23 ~~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e 90 (292)
T PRK15094 23 LSQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDE 90 (292)
T ss_pred HHHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHH
Confidence 344566553 489999999995 45679999999999999999999999999999999999999998764
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.7e-10 Score=92.52 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 149 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 149 l~~~~~~l~g~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
+..+++.+|..++ -+++|+..+++. +++.+.++++..+|+++++++.|.+|||||+||++|++++.++++++
T Consensus 19 fe~L~~~~f~gEp---knr~eLl~liRd----se~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~ 90 (293)
T COG4535 19 FERLLSQLFHGEP---KNREELLELIRD----SEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDE 90 (293)
T ss_pred HHHHHHHHhcCCC---cCHHHHHHHHHH----hhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHH
Confidence 4555556664443 378999999984 45679999999999999999999999999999999999999988753
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.71 E-value=0.0011 Score=61.22 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHHhccccCCC------CCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~------g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.++.||+..+++.. .++ +.++++|++++++++++++.+|+++|+ +++++++.+.|++
T Consensus 89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~ 151 (449)
T TIGR00400 89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG 151 (449)
T ss_pred cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH
Confidence 47789999999853 223 479999999999999999999999998 5889999888765
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.14 E-value=0.13 Score=47.56 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCCh-----hHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~-----~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
+.+|++|+..++... +..|.+.+ +|++++++++++++..++ ++++++.++|++
T Consensus 43 dtvTe~ema~~ma~~----gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~-------~~vtl~~~~tv~ 100 (450)
T TIGR01302 43 DTVTESRMAIAMARE----GGIGVIHRNMSIEEQAEQVKRVKRAENGIIS-------DPVTISPETTVA 100 (450)
T ss_pred CccCHHHHHHHHHhc----CCCceeecCCCHHHHHHHHhhhccccCceec-------CceEeCCCCCHH
Confidence 468999999999853 34688984 899999999999887554 556677766654
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=70.77 E-value=58 Score=28.83 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHh-------hhccccccccccccccceeEEeeCCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG-------ALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~-------v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+|.+|+...++.. .|-=.|++|+-+-+-+ .=.+.+.+..|||.+ |+++++.++++++
T Consensus 202 gfs~~Dld~aL~~~----~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dh 266 (382)
T COG3448 202 GFSSEDLDAALQRL----GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSIDH 266 (382)
T ss_pred CCCHHHHHHHHHhc----CceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChHH
Confidence 47889999988853 3345577765443322 235789999999975 8899999988763
No 12
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=65.84 E-value=6.6 Score=36.75 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCC-----hhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+|++|+...+.. .+..|.|. ++++++++++.++++... .++.+++.++|++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~~dim~-------~~~v~i~~~~tv~ 107 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRSESGVV-------TDPVTVTPDTTLA 107 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhhhhccc-------CCCeEeCCCCCHH
Confidence 47899999999975 34457787 588999999998766443 4566666666653
No 13
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=59.56 E-value=35 Score=23.39 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=14.4
Q ss_pred cccccchh-HHHHHHHHHH-HHHHHHHHHH
Q 027159 4 EYSCCGMG-FIIHIVVIVF-LVMFAGLMSG 31 (227)
Q Consensus 4 ~~~~~~~~-~~~~i~~~~~-ll~~sa~fs~ 31 (227)
++.-.+|+ +...+++++. +.++||++|-
T Consensus 13 ~~vAkdP~~Fl~~vll~LtPlfiisa~lSw 42 (74)
T PF15086_consen 13 EWVAKDPYEFLTTVLLILTPLFIISAVLSW 42 (74)
T ss_pred HHHHcChHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445565 3333333333 5667777764
No 14
>PLN03207 stomagen; Provisional
Probab=57.90 E-value=14 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=23.5
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027159 1 MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTL 34 (227)
Q Consensus 1 ~~~~~~~~~~~~~~~i~~~~~ll~~sa~fs~~E~ 34 (227)
||+||+.........++++..+++.+++..++..
T Consensus 1 man~~~~~tt~~~~lffLl~~llla~~v~qgsr~ 34 (113)
T PLN03207 1 MANECMTATTRCLTLFFLLFFLLLGAYVIQGSRN 34 (113)
T ss_pred CccccccccchhHHHHHHHHHHHHHHHHHhcccc
Confidence 8999998887765555555566666666666544
No 15
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=56.06 E-value=51 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027159 103 ISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (227)
Q Consensus 103 i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~ 157 (227)
..++++.++.-++-|+ ++.+++.-+|+|++++..|+-|+-.
T Consensus 194 ~~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 194 CLTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666665 5678888999999999999988743
No 16
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=51.03 E-value=15 Score=21.61 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027159 18 VIVFLVMFAGLMSGLTLG 35 (227)
Q Consensus 18 ~~~~ll~~sa~fs~~E~A 35 (227)
++++|+..++.|..++.|
T Consensus 5 l~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 5 LFLICLAAAAVFTAAGVA 22 (37)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 457799999999999875
No 17
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=50.89 E-value=3.8 Score=25.57 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.7
Q ss_pred ccccccccceeEEeeCCCCCC
Q 027159 206 ASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 206 v~eiM~PR~di~~i~~~~~~~ 226 (227)
|+|+|+| +...++.++|+.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~ 19 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE 19 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH
T ss_pred CeECCcC--CCEEEcCcCcHH
Confidence 5789998 888999888764
No 18
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=49.75 E-value=20 Score=25.74 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.4
Q ss_pred CCCChhHHHHHHhhhc
Q 027159 185 GELTHDETTIIAGALE 200 (227)
Q Consensus 185 g~l~~~E~~mi~~v~~ 200 (227)
|.++++|+++|...++
T Consensus 14 G~id~~E~~~I~~~~~ 29 (95)
T cd07178 14 GHIDEAERARILGELG 29 (95)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5566666666665553
No 19
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=46.29 E-value=41 Score=19.78 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=13.2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHH
Q 027159 3 VEYSCCGMGFIIHIVVIVFLVMFAGLM 29 (227)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~ll~~sa~f 29 (227)
||-+-++-+ |..+++.++.+++|.+|
T Consensus 10 VELNRTSLY-~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 10 VELNRTSLY-WGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp BE--CCHHH-HHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHH-HHHHHHHHHHHHhhhhh
Confidence 444444444 45555556666666655
No 20
>CHL00038 psbL photosystem II protein L
Probab=41.98 E-value=36 Score=20.10 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027159 12 FIIHIVVIVFLVMFAGLM 29 (227)
Q Consensus 12 ~~~~i~~~~~ll~~sa~f 29 (227)
+|.++++.++.+++|.+|
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666655
No 21
>PRK13664 hypothetical protein; Provisional
Probab=40.89 E-value=40 Score=22.02 Aligned_cols=19 Identities=16% Similarity=0.224 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 027159 10 MGFIIHIVVIVFLVMFAGL 28 (227)
Q Consensus 10 ~~~~~~i~~~~~ll~~sa~ 28 (227)
.+||++++++++-+++|++
T Consensus 6 dyWWilill~lvG~i~N~i 24 (62)
T PRK13664 6 KYWWILVLVFLVGVLLNVI 24 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678777777777777765
No 22
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=35.96 E-value=40 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHHHHhccccCCCCCCChhHHHHHHhhhc
Q 027159 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALE 200 (227)
Q Consensus 169 El~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~ 200 (227)
=||.||... .-+|.||++|++.|.+.++
T Consensus 82 llrAMIaAA----kADG~ID~~Er~~I~~~l~ 109 (188)
T PF04391_consen 82 LLRAMIAAA----KADGHIDEEERQRIEGALQ 109 (188)
T ss_pred HHHHHHHHH----HcCCCCCHHHHHHHHHHHH
Confidence 366666643 2347788888887776654
No 23
>PF15284 PAGK: Phage-encoded virulence factor
Probab=35.30 E-value=57 Score=21.55 Aligned_cols=22 Identities=14% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027159 15 HIVVIVFLVMFAGLMSGLTLGL 36 (227)
Q Consensus 15 ~i~~~~~ll~~sa~fs~~E~Al 36 (227)
.+++.+++++.++.||++-+|=
T Consensus 6 sifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 6 SIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 4577788889999999998884
No 24
>PF14163 SieB: Superinfection exclusion protein B
Probab=34.14 E-value=2.2e+02 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=9.4
Q ss_pred CChhHHHHHHhhhccc
Q 027159 187 LTHDETTIIAGALELT 202 (227)
Q Consensus 187 l~~~E~~mi~~v~~f~ 202 (227)
++++|+.++.-.+.=+
T Consensus 79 Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 79 LTPEEKAVLREFYIQG 94 (151)
T ss_pred CCHHHHHHHHHHHHCC
Confidence 5666666665555444
No 25
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=30.13 E-value=62 Score=19.16 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027159 12 FIIHIVVIVFLVMFAGLM 29 (227)
Q Consensus 12 ~~~~i~~~~~ll~~sa~f 29 (227)
+|.++++.++.+++|.+|
T Consensus 20 y~GlLlifvl~vLFssYf 37 (39)
T PRK00753 20 YLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455566666667777665
No 26
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=29.50 E-value=29 Score=23.91 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAK 224 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~ 224 (227)
..-|.||+...+..+- ..| +++++|.|.+=|.+.+|...+-+++....
T Consensus 18 s~~s~dev~~~v~~Al----~~~----------~~~l~LtD~kGr~~lVp~~~iaYVeiG~~ 65 (74)
T PF11305_consen 18 SDQSADEVEAAVTDAL----ADG----------SGVLTLTDEKGRRVLVPAASIAYVEIGSE 65 (74)
T ss_pred cCCCHHHHHHHHHHHH----hCC----------CceEEEEeCCCCEEEEECCcEEEEEEcCC
Confidence 3467899999998432 111 17899999999999999999999988654
No 27
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=29.10 E-value=83 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHhhh
Q 027159 184 GGELTHDETTIIAGAL 199 (227)
Q Consensus 184 ~g~l~~~E~~mi~~v~ 199 (227)
.|-++++|++++++++
T Consensus 52 kGNL~~~E~~lL~~~L 67 (74)
T PF08899_consen 52 KGNLDEEEERLLESAL 67 (74)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 5899999999999986
No 28
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=28.90 E-value=69 Score=19.71 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHh
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG 197 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~ 197 (227)
..|.|+++..|+. |-|+++|.+-|-|
T Consensus 17 ~~t~e~v~~~V~~--------~~IT~eey~eITG 42 (45)
T TIGR01669 17 YYSNEDVNKFVEK--------KLITREQYKVITG 42 (45)
T ss_pred CCCHHHHHHHhhc--------CccCHHHHHHHhC
Confidence 5789999999983 7899999876654
No 29
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=28.42 E-value=1.9e+02 Score=19.80 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHchHHHHHhhhHHH
Q 027159 98 WGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFV 135 (227)
Q Consensus 98 ~~a~~i~t~l~lifgEiiPK~la~~~~e~~a~~~a~~l 135 (227)
..+..+.+.+.+++|..+++.+ |+++..+.+..+
T Consensus 40 ~~al~~~~~lav~~G~~l~~~i----p~~~i~~~~~~l 73 (78)
T PF01169_consen 40 TLALALATGLAVLLGSWLASRI----PERYIKWVAGAL 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHH
Confidence 3445555566666666554433 555555554443
No 30
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.14 E-value=2.6e+02 Score=21.43 Aligned_cols=16 Identities=13% Similarity=0.563 Sum_probs=7.8
Q ss_pred chhHHHHHHHHHHHHH
Q 027159 9 GMGFIIHIVVIVFLVM 24 (227)
Q Consensus 9 ~~~~~~~i~~~~~ll~ 24 (227)
.+.||+.+++++++++
T Consensus 20 a~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 20 APGWWLLLALLLLLLI 35 (146)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3446655554444444
No 31
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=27.27 E-value=68 Score=19.11 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHh
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG 197 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~ 197 (227)
..|.++++..|+. |.|.++|.+-|-+
T Consensus 12 ~~t~~~v~~~V~~--------g~IT~eey~eITG 37 (40)
T PF09693_consen 12 LYTKEDVKNFVEA--------GWITKEEYKEITG 37 (40)
T ss_pred CCCHHHHHHHhhc--------CeECHHHHHHhhC
Confidence 5789999999984 8899999776543
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=26.15 E-value=76 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=20.4
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCChhHH
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELTHDET 192 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~ 192 (227)
+.+|.+|++.||+++... ..|.+.++|-
T Consensus 137 enltD~El~eMIeEAd~d--~dgevneeEF 164 (172)
T KOG0028|consen 137 ENLTDEELMEMIEEADRD--GDGEVNEEEF 164 (172)
T ss_pred ccccHHHHHHHHHHhccc--ccccccHHHH
Confidence 578999999999976432 3567776664
No 33
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.66 E-value=58 Score=19.61 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.4
Q ss_pred cccccHHHHHHHHHH
Q 027159 162 VALFRRAELKTLVNL 176 (227)
Q Consensus 162 ~~~~s~eEl~~lv~~ 176 (227)
..++|.+||+.+++.
T Consensus 11 ~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 11 QGPFSLEELRQLISS 25 (45)
T ss_pred ECCcCHHHHHHHHHc
Confidence 357899999999983
No 34
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=24.12 E-value=65 Score=19.60 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=14.6
Q ss_pred CCChhHHHHHHhhhcccccccccc
Q 027159 186 ELTHDETTIIAGALELTEKTASDA 209 (227)
Q Consensus 186 ~l~~~E~~mi~~v~~f~~~~v~ei 209 (227)
.++++|+++|.-.+ +.+.+.+||
T Consensus 4 ~L~~~er~vi~~~y-~~~~t~~eI 26 (50)
T PF04545_consen 4 QLPPREREVIRLRY-FEGLTLEEI 26 (50)
T ss_dssp TS-HHHHHHHHHHH-TST-SHHHH
T ss_pred hCCHHHHHHHHHHh-cCCCCHHHH
Confidence 46778888887777 666665554
No 35
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=22.22 E-value=2.8e+02 Score=19.29 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHhhhhHHHH--HHchHHHHHhhhHHHHHH-HHHHHHHHHHHHH
Q 027159 109 LLFGEIIPQSVC--SRYGLAIGSTVAPFVRVL-VWICYPVAFPISK 151 (227)
Q Consensus 109 lifgEiiPK~la--~~~~e~~a~~~a~~l~~~-~~l~~Pl~~~l~~ 151 (227)
++.-..+|-.+| ++||..=+...+..+.+| ...++|+.++-..
T Consensus 20 ~~~lh~lP~~iA~kr~Hpq~eaI~v~gwisLft~~~lWp~a~IwA~ 65 (78)
T PF11742_consen 20 FWKLHDLPGKIAHKRNHPQAEAIHVLGWISLFTLHVLWPFAWIWAY 65 (78)
T ss_pred HHHHHhhHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466788888 557887777777777755 4578888775443
No 36
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=21.66 E-value=1.1e+02 Score=28.62 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 186 ~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.++++|++-++..+...+-++..+|++ +.++++.+.|++|
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~~ 153 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVDE 153 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHHH
Confidence 368899999999999999999999985 7888888888653
No 37
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=21.61 E-value=1.2e+02 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027159 11 GFIIHIVVIVFLVMFAGL 28 (227)
Q Consensus 11 ~~~~~i~~~~~ll~~sa~ 28 (227)
+||+ ++++++-+++||+
T Consensus 7 YWWi-iLl~lvG~i~n~i 23 (63)
T PF13980_consen 7 YWWI-ILLILVGMIINGI 23 (63)
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 4665 4555555555554
No 38
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=21.20 E-value=1.9e+02 Score=18.59 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhh
Q 027159 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGAL 199 (227)
Q Consensus 165 ~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~ 199 (227)
-|+|||...+..+..+.+....+.++-.+-|++.+
T Consensus 20 ~tedEll~~~~~Ha~~~Hg~~~~~~el~~~ir~~I 54 (57)
T PF06348_consen 20 ETEDELLEAVVEHAREVHGMTEIPEELREKIRSAI 54 (57)
T ss_pred CCHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHh
Confidence 47899999988775544433345566666666544
No 39
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=21.15 E-value=27 Score=31.49 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHhhh-----ccccccccccccccceeEEeeCCCCCCC
Q 027159 191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 191 E~~mi~~v~-----~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
-..||++++ .=+=.+|.|||+|.++-..+..++++++
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d 211 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVED 211 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHH
Confidence 345666655 3345789999999999999999888753
No 40
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=21.04 E-value=32 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=22.0
Q ss_pred ccccccccccccceeEEeeCCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
...+|+|+|++.+++..++.++|+.|
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~ 225 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRD 225 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHH
Confidence 67789999998779999999988753
No 41
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.18 E-value=39 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.8
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+|+|+|+|..+.++++.+++++
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~ 183 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK 183 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH
Confidence 45688999999988899998888764
Done!