Query 027159
Match_columns 227
No_of_seqs 213 out of 1178
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oi8_A Uncharacterized protein 98.9 4.1E-10 1.4E-14 87.3 2.6 59 164-226 2-60 (156)
2 3lhh_A CBS domain protein; str 98.7 1.3E-09 4.5E-14 85.8 -0.8 61 162-226 4-64 (172)
3 3ocm_A Putative membrane prote 98.1 4E-07 1.4E-11 71.8 0.9 46 181-226 13-58 (173)
4 3kxr_A Magnesium transporter, 96.7 0.0012 4.2E-08 53.0 3.9 38 187-226 37-74 (205)
5 2zy9_A Mg2+ transporter MGTE; 96.5 0.0015 5.3E-08 59.3 3.6 58 164-227 110-176 (473)
6 2yvy_A MGTE, Mg2+ transporter 95.5 0.0035 1.2E-07 52.6 1.1 60 165-226 91-155 (278)
7 2oux_A Magnesium transporter; 89.2 0.17 5.8E-06 42.4 2.3 40 185-226 118-157 (286)
8 3org_A CMCLC; transporter, tra 82.0 0.18 6.3E-06 47.2 -1.2 26 202-227 451-476 (632)
9 1zfj_A Inosine monophosphate d 76.1 0.53 1.8E-05 42.4 -0.0 52 164-226 54-110 (491)
10 4fxs_A Inosine-5'-monophosphat 73.2 0.54 1.8E-05 42.8 -0.8 53 163-226 52-109 (496)
11 3k2v_A Putative D-arabinose 5- 69.7 0.94 3.2E-05 33.3 -0.0 23 204-226 28-50 (149)
12 3kh5_A Protein MJ1225; AMPK, A 68.8 0.28 9.5E-06 39.9 -3.4 55 163-226 50-104 (280)
13 2cu0_A Inosine-5'-monophosphat 64.3 2.8 9.5E-05 37.7 2.0 53 164-227 57-114 (486)
14 3ghd_A A cystathionine beta-sy 60.8 4.6 0.00016 26.0 2.1 14 200-213 53-66 (70)
15 3ddj_A CBS domain-containing p 59.3 0.97 3.3E-05 37.2 -1.9 50 164-226 64-113 (296)
16 3fv6_A YQZB protein; CBS domai 58.6 2.7 9.3E-05 31.1 0.7 36 191-226 65-103 (159)
17 4avf_A Inosine-5'-monophosphat 51.0 5 0.00017 36.2 1.3 54 163-227 51-109 (490)
18 3l2b_A Probable manganase-depe 47.8 2.7 9.3E-05 33.6 -0.9 24 202-226 183-206 (245)
19 1me8_A Inosine-5'-monophosphat 46.7 8 0.00027 34.9 1.9 53 163-227 60-118 (503)
20 3arc_L Photosystem II reaction 41.4 26 0.00089 19.7 2.8 18 12-29 18-35 (37)
21 2rc3_A CBS domain; in SITU pro 41.1 8.6 0.0003 27.1 1.0 25 200-226 70-94 (135)
22 4fxs_A Inosine-5'-monophosphat 34.9 15 0.0005 33.2 1.7 26 202-227 147-172 (496)
23 1vr9_A CBS domain protein/ACT 34.8 2.1 7.1E-05 33.8 -3.6 57 164-226 29-92 (213)
24 4fry_A Putative signal-transdu 31.7 11 0.00037 27.4 0.2 24 201-226 75-98 (157)
25 1yav_A Hypothetical protein BS 29.7 15 0.00053 26.7 0.8 24 201-226 83-106 (159)
26 2xf7_A GP23.1; viral protein; 29.3 77 0.0026 18.7 3.6 24 164-195 18-41 (51)
27 4avf_A Inosine-5'-monophosphat 27.4 13 0.00044 33.5 0.0 26 202-227 145-170 (490)
28 1pvm_A Conserved hypothetical 27.1 25 0.00087 26.3 1.7 34 191-226 58-95 (184)
29 2yzi_A Hypothetical protein PH 26.0 27 0.00092 24.4 1.6 24 201-226 69-92 (138)
30 1pbj_A Hypothetical protein; s 25.7 16 0.00054 25.1 0.2 25 200-226 61-85 (125)
31 1me8_A Inosine-5'-monophosphat 25.2 15 0.00051 33.1 0.0 26 202-227 159-184 (503)
32 3fio_A A cystathionine beta-sy 24.4 42 0.0014 20.3 2.1 13 201-213 54-66 (70)
33 2emq_A Hypothetical conserved 24.2 28 0.00096 25.0 1.4 24 201-226 80-103 (157)
34 3lfr_A Putative metal ION tran 23.6 15 0.00051 26.1 -0.3 23 201-226 67-89 (136)
35 2uv4_A 5'-AMP-activated protei 23.5 28 0.00095 25.0 1.2 25 202-226 85-113 (152)
36 3lqn_A CBS domain protein; csg 21.9 36 0.0012 24.2 1.5 24 201-226 84-107 (150)
37 1o50_A CBS domain-containing p 21.7 21 0.00072 25.9 0.2 24 200-226 92-115 (157)
38 3lhh_A CBS domain protein; str 20.9 46 0.0016 24.5 2.0 32 192-226 95-126 (172)
39 3usb_A Inosine-5'-monophosphat 20.1 5.3 0.00018 36.3 -4.1 53 163-226 76-133 (511)
No 1
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.90 E-value=4.1e-10 Score=87.25 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+|+|||+.+++. ++++|.++++|+++++++++|++.+|+|+|+||+++++++.++|++
T Consensus 2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~ 60 (156)
T 3oi8_A 2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60 (156)
T ss_dssp CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH
T ss_pred CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH
Confidence 4799999999995 3456999999999999999999999999999999999999999875
No 2
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.70 E-value=1.3e-09 Score=85.81 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=20.7
Q ss_pred cccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+.+|+|||+.+++. ++++|.++++|+++++++++|++.+|+|+|+|+.++++++.++|+.
T Consensus 4 ~~~~t~~el~~l~~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~ 64 (172)
T 3lhh_A 4 DDNVTQEDIQAMLQE----GSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64 (172)
T ss_dssp -------------------------------------------CTTTTSEEGGGCCCEETTSCHH
T ss_pred cccCCHHHHHHHHHH----HHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH
Confidence 356899999999985 4567999999999999999999999999999999999999999864
No 3
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.15 E-value=4e-07 Score=71.82 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.6
Q ss_pred cCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 181 ~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++++|.++++|+++++++++|++.+|+++|+|++++++++.++|++
T Consensus 13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ 58 (173)
T 3ocm_A 13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA 58 (173)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH
T ss_pred HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH
Confidence 3456999999999999999999999999999999999999999865
No 4
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=96.68 E-value=0.0012 Score=53.04 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=35.2
Q ss_pred CChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 187 l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++++|++++++++++.+.+|+++|+| ++++++.++|++
T Consensus 37 l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~ 74 (205)
T 3kxr_A 37 MGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA 74 (205)
T ss_dssp SCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH
T ss_pred CCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH
Confidence 68999999999999999999999988 799999998865
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=96.48 E-value=0.0015 Score=59.26 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=49.4
Q ss_pred cccHHHHHHHHHHhccccCCC---------CCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKG---------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~---------g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+++||+..+++.. .++ +.++++|++++++++++++.+|+++|+| ++++++.++|++|
T Consensus 110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~e 176 (473)
T 2zy9_A 110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEE 176 (473)
T ss_dssp HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHH
T ss_pred hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHH
Confidence 46788899888853 234 7899999999999999999999999997 8999999988653
No 6
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=95.49 E-value=0.0035 Score=52.55 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHhccc---cCCC--CCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 165 FRRAELKTLVNLHGNE---AGKG--GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 165 ~s~eEl~~lv~~~~~e---~~~~--g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++.++...+++...++ ..+. |.++.++++++.+++++.+.+|+++|+| ++++++.++|++
T Consensus 91 l~~d~~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~ 155 (278)
T 2yvy_A 91 LSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE 155 (278)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH
T ss_pred CCHHHHHHHHHhCCCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH
Confidence 4556666666532111 0000 4678899999999999999999999998 889999888764
No 7
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=89.16 E-value=0.17 Score=42.39 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 185 GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 185 g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
+.++.+|+..+++++.+.+.+|+++|+| ++++++.++|++
T Consensus 118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~ 157 (286)
T 2oux_A 118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR 157 (286)
T ss_dssp HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH
T ss_pred HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH
Confidence 3578889999999999999999999987 788999888764
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=82.01 E-value=0.18 Score=47.17 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.8
Q ss_pred ccccccccccccceeEEeeCCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
++.+|+|+|+||+|+++++.++|++|
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e 476 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQH 476 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHH
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHH
Confidence 78999999999999999999998754
No 9
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=76.13 E-value=0.53 Score=42.42 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHhccccCCCCCCC-----hhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+|++|+...+...+ ..|.+. +++++++++++++ +|+|+| ++++++.++|++
T Consensus 54 ~vt~~eLa~av~~~G----g~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~ 110 (491)
T 1zfj_A 54 TVTGSKMAIAIARAG----GLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS 110 (491)
T ss_dssp TTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH
T ss_pred hccHHHHHHHHHHcC----CceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH
Confidence 578899999887532 234555 7889999998875 679987 778888877654
No 10
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=73.17 E-value=0.54 Score=42.76 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHHhccccCCCCCC-----ChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+|++|+...+...+ .-|.| .+++.++++++ ++++++|+ ++.++++.++|++
T Consensus 52 dtVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~ 109 (496)
T 4fxs_A 52 DTVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA 109 (496)
T ss_dssp TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH
T ss_pred chhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHH
Confidence 4689999998887532 23555 67889999999 67788998 6888899888865
No 11
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=69.71 E-value=0.94 Score=33.27 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.2
Q ss_pred ccccccccccceeEEeeCCCCCC
Q 027159 204 KTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 204 ~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+|+|+|+|+.++.+++.++|+.
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~ 50 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLR 50 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHH
T ss_pred cCHHHHhcCCCCCeEECCCCcHH
Confidence 89999999999999999998865
No 12
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=68.84 E-value=0.28 Score=39.87 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=35.5
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+|.+|+...+..+ .+.+.++.. ...++++..+.+|+++|+| ++++++.++|++
T Consensus 50 Givt~~di~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~ 104 (280)
T 3kh5_A 50 GIITSMDIVDFMGGG----SKYNLIREK---HERNFLAAINEPVREIMEE--NVITLKENADID 104 (280)
T ss_dssp EEEEHHHHHHHTTTS----GGGHHHHTT---STTCHHHHTTSBGGGTSBC--SCCCEETTCBHH
T ss_pred EEEEHHHHHHHhccc----chhhhhhhc---cccchhHHhhhhHHHhcCC--CCEEECCCCCHH
Confidence 357899998876521 111222111 1344555668999999997 788899888764
No 13
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=64.28 E-value=2.8 Score=37.75 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHHhccccCCCCCCC-----hhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+|++|+...+...+ ..|.+. +++++++++++++++ +|+ .++++++.++|++|
T Consensus 57 ~vt~~ela~ava~~G----glG~i~~~~~~e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~e 114 (486)
T 2cu0_A 57 TVTEWEMAVAMAREG----GLGVIHRNMGIEEQVEQVKRVKRAER-----LIV--EDVITIAPDETVDF 114 (486)
T ss_dssp TTCSHHHHHHHHHTT----CEEEECSSSCHHHHHHHHHHHHTCC-------------------------
T ss_pred eecHHHHHHHHHhcC----CceeecCCCCHHHHHHHHHhhcchhh-----ccc--cCceEECCCCCHHH
Confidence 578899998887432 224453 678999999998865 576 57888888777654
No 14
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=60.76 E-value=4.6 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.4
Q ss_pred cccccccccccccc
Q 027159 200 ELTEKTASDAMTPI 213 (227)
Q Consensus 200 ~f~~~~v~eiM~PR 213 (227)
+..+++|+|+|++-
T Consensus 53 ~~~~~~V~~iMt~~ 66 (70)
T 3ghd_A 53 NPKEVKVEEIMTKN 66 (70)
T ss_dssp CGGGCBGGGTCEEC
T ss_pred CcccCCHHHhcCCC
Confidence 45688999999974
No 15
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=59.31 E-value=0.97 Score=37.16 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+|.+||...+.. +.+ ..+...+.+++.+.+|+++|+| ++++++.++++.
T Consensus 64 ivT~~Di~~~~~~----~~~-------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~ 113 (296)
T 3ddj_A 64 LLTTRDLLSTVES----YCK-------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF 113 (296)
T ss_dssp EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH
T ss_pred EEeHHHHHHHhcc----ccc-------ccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH
Confidence 5788888876642 100 1345667778889999999997 677888887753
No 16
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=58.65 E-value=2.7 Score=31.08 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.9
Q ss_pred HHHHHHhh---hccccccccccccccceeEEeeCCCCCC
Q 027159 191 ETTIIAGA---LELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 191 E~~mi~~v---~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++++++.. -...+.+++++|+|+.++++++.++++.
T Consensus 65 ~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~ 103 (159)
T 3fv6_A 65 RKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVM 103 (159)
T ss_dssp HHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHH
T ss_pred HHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHH
Confidence 34444443 2457889999999999999999988864
No 17
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=51.00 E-value=5 Score=36.23 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=26.0
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCC-----hhHHHHHHhhhccccccccccccccceeEEeeCCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
..+|++++...+...+ .-|.+. +++.++++++ ++++++|+ ++.++++.++|++|
T Consensus 51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~--~~~v~v~~~~tv~e 109 (490)
T 4avf_A 51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIV--RDPVTVTPSTKIIE 109 (490)
T ss_dssp TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC-------------------
T ss_pred hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCcc--cCceEeCCCCcHHH
Confidence 4689999998887532 234454 6778888888 45788888 46788888888764
No 18
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=47.82 E-value=2.7 Score=33.59 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.8
Q ss_pred ccccccccccccceeEEeeCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
.+.+|+|+|+| +++.+++.+++++
T Consensus 183 ~~~~v~~im~~-~~~~~~~~~~~~~ 206 (245)
T 3l2b_A 183 QSLPVDYVMTK-DNLVAVSTDDLVE 206 (245)
T ss_dssp GGSBHHHHSBC-TTCCCEETTSBHH
T ss_pred cCCceeeEecC-CccEEECCCCcHH
Confidence 56789999999 8999999998864
No 19
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=46.74 E-value=8 Score=34.93 Aligned_cols=53 Identities=4% Similarity=0.053 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHHhccccCCCCCC-----ChhHHHHHHhhhcccccccccc-ccccceeEEeeCCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDA-MTPIAETFAIDINAKLDK 227 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~v~~f~~~~v~ei-M~PR~di~~i~~~~~~~e 227 (227)
..+|++++...+...+ ..|.+ .++++++++++.. .|+ |+| ++++++.++|++|
T Consensus 60 ~~vt~~~la~~la~~g----g~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~e 118 (503)
T 1me8_A 60 QSVSGEKMAIALAREG----GISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFAD 118 (503)
T ss_dssp TTTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHT------TTC-------------------
T ss_pred hhhhHHHHHHHHHhCC----CcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHHH
Confidence 3578899988887421 11222 2567888877665 356 987 8899999988865
No 20
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=41.44 E-value=26 Score=19.69 Aligned_cols=18 Identities=11% Similarity=0.573 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027159 12 FIIHIVVIVFLVMFAGLM 29 (227)
Q Consensus 12 ~~~~i~~~~~ll~~sa~f 29 (227)
+|.++++.++.+++|.+|
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 455556666666776665
No 21
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=41.11 E-value=8.6 Score=27.12 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.4
Q ss_pred ccccccccccccccceeEEeeCCCCCC
Q 027159 200 ELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 200 ~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
+..+.+++++|.| +..+++.+++++
T Consensus 70 ~~~~~~v~~~m~~--~~~~v~~~~~l~ 94 (135)
T 2rc3_A 70 PVKDTQVKEIMTR--QVAYVDLNNTNE 94 (135)
T ss_dssp CGGGSBGGGTSBC--SCCCBCTTCBHH
T ss_pred CcccCCHHHhccC--CCeEECCCCcHH
Confidence 3578999999987 667788777754
No 22
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=34.86 E-value=15 Score=33.22 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.5
Q ss_pred ccccccccccccceeEEeeCCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+.+++|+|+|+.+.++++.+++++|
T Consensus 147 ~~~~v~diM~p~~~~vtv~~~~~l~e 172 (496)
T 4fxs_A 147 LTKSVAAVMTPKERLATVKEGATGAE 172 (496)
T ss_dssp TTSBGGGTSEEGGGCCEEECC----C
T ss_pred CCCcHHHHhcCCCCCEEECCCCCHHH
Confidence 56789999999988999999988765
No 23
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=34.82 E-value=2.1 Score=33.76 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHHHhhhccccc-------cccccccccceeEEeeCCCCCC
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEK-------TASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~v~~f~~~-------~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..|-+|...++...+ ..+..--++...+.|++..+|. +|+++|+| ++.+++.+++++
T Consensus 29 ~~tv~ea~~~m~~~~----~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~ 92 (213)
T 1vr9_A 29 SATVRECLHRMRQYQ----TNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNIT 92 (213)
T ss_dssp TCBHHHHHHHHHHTT----SSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHH
T ss_pred CCcHHHHHHHHHHCC----CCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHH
Confidence 456677777776431 1122111222335566666665 59999998 677888887754
No 24
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=31.73 E-value=11 Score=27.43 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=19.0
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+++++|+| +..+++.++++.
T Consensus 75 ~~~~~v~~~m~~--~~~~v~~~~~l~ 98 (157)
T 4fry_A 75 SKATRVEEIMTA--KVRYVEPSQSTD 98 (157)
T ss_dssp SSSCBHHHHSBS--SCCCBCTTSBHH
T ss_pred ccccCHHHHcCC--CCcEECCCCcHH
Confidence 468899999997 677788887754
No 25
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=29.70 E-value=15 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.1
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+|+++|.| ++.+++.+++++
T Consensus 83 ~~~~~v~~~m~~--~~~~v~~~~~l~ 106 (159)
T 1yav_A 83 LDQITVEEVMLT--DIPRLHINDPIM 106 (159)
T ss_dssp TTTSBHHHHSBC--SCCEEETTSBHH
T ss_pred hccCCHHHhcCC--CCceEcCCCCHH
Confidence 568899999987 677888887754
No 26
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=29.31 E-value=77 Score=18.74 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHhccccCCCCCCChhHHHHH
Q 027159 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTII 195 (227)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi 195 (227)
..+++++|..++. |.+.++|.+-|
T Consensus 18 T~~~~~mR~AV~~--------G~iTQ~E~D~I 41 (51)
T 2xf7_A 18 TASEELLRVAVNA--------GDLTQEEADKI 41 (51)
T ss_dssp CCCHHHHHHHHHH--------TSSCHHHHHHH
T ss_pred hhhHHHHHHHHhc--------CcccHHHHHHH
Confidence 5788999999883 88999998754
No 27
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=27.41 E-value=13 Score=33.48 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccccccccccccceeEEeeCCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+.+|+|+|+|+.+.++++.+++++|
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~e 170 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLEE 170 (490)
T ss_dssp --------------------------
T ss_pred cCCcHHHHhccCCCCEEECCCCcHHH
Confidence 46789999999988999999888764
No 28
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=27.09 E-value=25 Score=26.28 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=23.6
Q ss_pred HHHHHHhhh----ccccccccccccccceeEEeeCCCCCC
Q 027159 191 ETTIIAGAL----ELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 191 E~~mi~~v~----~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++++++... ...+.+++++|.| +..+++.++++.
T Consensus 58 ~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~ 95 (184)
T 1pvm_A 58 ERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK 95 (184)
T ss_dssp HHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH
T ss_pred HHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH
Confidence 345555544 3578899999986 567788877753
No 29
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=26.01 E-value=27 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+++++|.| +..+++.++++.
T Consensus 69 ~~~~~v~~~m~~--~~~~v~~~~~l~ 92 (138)
T 2yzi_A 69 PYDIPVERIMTR--NLITANVNTPLG 92 (138)
T ss_dssp CTTSBGGGTCBC--SCCEEETTSBHH
T ss_pred cccCCHHHHhhC--CCeEECCCCcHH
Confidence 457899999986 577888887754
No 30
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=25.72 E-value=16 Score=25.08 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=19.6
Q ss_pred ccccccccccccccceeEEeeCCCCCC
Q 027159 200 ELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 200 ~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++.+.+++++|.| ++..++.+++++
T Consensus 61 ~~~~~~v~~~m~~--~~~~v~~~~~l~ 85 (125)
T 1pbj_A 61 DLAEVKVWEVMER--DLVTISPRATIK 85 (125)
T ss_dssp CTTTSBHHHHCBC--GGGEECTTSCHH
T ss_pred cccccCHHHHcCC--CCeEECCCCCHH
Confidence 4568899999987 677888887754
No 31
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=25.20 E-value=15 Score=33.10 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=0.0
Q ss_pred ccccccccccccceeEEeeCCCCCCC
Q 027159 202 TEKTASDAMTPIAETFAIDINAKLDK 227 (227)
Q Consensus 202 ~~~~v~eiM~PR~di~~i~~~~~~~e 227 (227)
.+.+|+|+|+|+++.++++.+++++|
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~e 184 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSE 184 (503)
T ss_dssp --------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHH
Confidence 56789999999989999999988764
No 32
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=24.39 E-value=42 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=10.4
Q ss_pred ccccccccccccc
Q 027159 201 LTEKTASDAMTPI 213 (227)
Q Consensus 201 f~~~~v~eiM~PR 213 (227)
..+.+|+|+|+|.
T Consensus 54 ~~~~~v~~im~~~ 66 (70)
T 3fio_A 54 PKEVKVEEIMTKN 66 (70)
T ss_dssp GGGCBGGGTCEEC
T ss_pred cccCCHHHhcCCC
Confidence 4578899999874
No 33
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=24.22 E-value=28 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.0
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+++++|.| ++.+++.++++.
T Consensus 80 ~~~~~v~~~m~~--~~~~v~~~~~l~ 103 (157)
T 2emq_A 80 LETMKVEEVMNR--NIPRLRLDDSLM 103 (157)
T ss_dssp GGTCBGGGTCBC--CCCEEETTSBHH
T ss_pred hcCCcHHHHhCC--CCceecCCCcHH
Confidence 467899999987 677888887754
No 34
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=23.63 E-value=15 Score=26.09 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=18.1
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+++++|.| ..+++.++++.
T Consensus 67 ~~~~~v~~~m~~---~~~v~~~~~l~ 89 (136)
T 3lfr_A 67 GDSDDVKKLLRP---ATFVPESKRLN 89 (136)
T ss_dssp GGGCCGGGTCBC---CCEEETTCBHH
T ss_pred CCCcCHHHHcCC---CeEECCCCcHH
Confidence 467889999976 68888888764
No 35
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=23.47 E-value=28 Score=25.04 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=20.1
Q ss_pred cccccccccccc----ceeEEeeCCCCCC
Q 027159 202 TEKTASDAMTPI----AETFAIDINAKLD 226 (227)
Q Consensus 202 ~~~~v~eiM~PR----~di~~i~~~~~~~ 226 (227)
.+.+++++|.|+ .++.+++.++++.
T Consensus 85 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~ 113 (152)
T 2uv4_A 85 LDVSVTKALQHRSHYFEGVLKCYLHETLE 113 (152)
T ss_dssp TTSBGGGGGGTCCHHHHTCSEECTTSBHH
T ss_pred hcchHHHHHhhhhcccCCCeEECCCCcHH
Confidence 467899999886 6788888888764
No 36
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=21.87 E-value=36 Score=24.19 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.7
Q ss_pred cccccccccccccceeEEeeCCCCCC
Q 027159 201 LTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 201 f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+.+++++|.+ +..+++.++++.
T Consensus 84 ~~~~~v~~~m~~--~~~~v~~~~~l~ 107 (150)
T 3lqn_A 84 LEEMKVEQVMKQ--DIPVLKLEDSFA 107 (150)
T ss_dssp GGGCBGGGTCBS--SCCEEETTCBHH
T ss_pred HhcCCHHHHhcC--CCceeCCCCCHH
Confidence 467899999984 567888887764
No 37
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=21.71 E-value=21 Score=25.88 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=19.0
Q ss_pred ccccccccccccccceeEEeeCCCCCC
Q 027159 200 ELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 200 ~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
...+.+++++|.| +.+++.+++++
T Consensus 92 ~~~~~~v~~im~~---~~~v~~~~~l~ 115 (157)
T 1o50_A 92 RLIAKNASEIMLD---PVYVHMDTPLE 115 (157)
T ss_dssp CCSSCBHHHHCBC---CCCBCTTSBHH
T ss_pred HHcCCcHHHHcCC---CeEECCCCCHH
Confidence 3567899999998 77888887754
No 38
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=20.88 E-value=46 Score=24.53 Aligned_cols=32 Identities=3% Similarity=-0.069 Sum_probs=21.6
Q ss_pred HHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 192 ~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
++++....+=.+.+++++| .+..+++.++++.
T Consensus 95 ~dl~~~~~~~~~~~v~~im---~~~~~v~~~~~l~ 126 (172)
T 3lhh_A 95 KQLLSESIAGERLELVDLV---KNCNFVPNSLSGM 126 (172)
T ss_dssp HHHHHHHHTTCCCCGGGGC---BCCEEEETTCCHH
T ss_pred HHHHHHHhhcCcccHHHHh---cCCeEeCCCCCHH
Confidence 4444444433478999999 4668888888764
No 39
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=20.09 E-value=5.3 Score=36.28 Aligned_cols=53 Identities=8% Similarity=0.169 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHHhccccCCCCCCC-----hhHHHHHHhhhccccccccccccccceeEEeeCCCCCC
Q 027159 163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226 (227)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~v~~f~~~~v~eiM~PR~di~~i~~~~~~~ 226 (227)
..+|++++...+...+ .-|.|. +++.++++++.. .+++|+ ++.++++.++|++
T Consensus 76 dtvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~--~d~v~l~~~~tv~ 133 (511)
T 3usb_A 76 DTVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVI--SDPFFLTPEHQVY 133 (511)
T ss_dssp TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSS--SSCCCBCTTSBHH
T ss_pred hhhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----cccccc--cCCEEECCCCCHH
Confidence 4678999988776432 124343 334445555543 233443 4678888887764
Done!