BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027163
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 80 AAAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
A + +CAVCLAE + R LP CGH FHA C+D+WL HSTCP+CR+++
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRV 130
+E T C VC+ ++ LR+LP C H FHA C+D WL + TCP+CR
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
+C VC +Y +++R LP C H FH +CI WL QH +CPVCR SL
Sbjct: 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 65 VVANFPMKK----------FSDEYFAAAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATC 114
+VAN P K ++++ A ++ C +C +EY D LP C H FH C
Sbjct: 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPC 69
Query: 115 IDIWLHQHSTCPVCR 129
+ IWL + TCPVCR
Sbjct: 70 VSIWLQKSGTCPVCR 84
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR-ELP 136
+C +CL+ + +R LP C H FH C+D WL + CP+CRV + +LP
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 47.8 bits (112), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 87 CAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRELPE 137
CAVCL ++ D L I P C H+FH C+ WL CP+C + + +L +
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 87 CAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCR 129
C C AE ED + + C HSFH C+ +W+ Q++ CP+C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
++ +C +C+ G L ILP C HSF CID W +H CP+CR+ +
Sbjct: 14 DEEECCICM---DGRADL-ILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 35 HLNSSRRSFPIASRSDLSLLERGLHGVEPVVVANFPMKKFSDEYFAAAEDT-----QCAV 89
LN S++ F ++ LE+ E M+ +E + D QC +
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKEK-------MQAQKEEVLSHMNDVLENELQCII 58
Query: 90 CLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133
C +EY E + C HSF + CI+ W+ + CP+CR ++
Sbjct: 59 C-SEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 35 HLNSSRRSFPIASRSDLSLLERGLHGVEPVVVANFPMKKFSDEYFAAAEDT-----QCAV 89
LN S++ F ++ LE+ E M+ +E + D QC +
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKEK-------MQAQKEEVLSHMNDVLENELQCII 58
Query: 90 CLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133
C +EY E + C HSF + CI+ W+ + CP+CR ++
Sbjct: 59 C-SEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 35 HLNSSRRSFPIASRSDLSLLERGLHGVEPVVVANFPMKKFSDEYFAAAEDT-----QCAV 89
LN S++ F ++ LE+ E M+ +E + D QC +
Sbjct: 17 ELNRSKKDFEAIIQAKNKELEQTKEEKEK-------MQAQKEEVLSHMNDVLENELQCII 69
Query: 90 CLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133
C +EY E + C HSF + CI+ W+ + CP+CR ++
Sbjct: 70 C-SEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135
+C +CL + + LP C H+F CI W+ Q+ TCP+C+V + +
Sbjct: 7 RCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW---LHQHSTCPVC 128
+ C+VCL EY E ++ CGH+F CI W L + CPVC
Sbjct: 15 EASCSVCL-EYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRELPERK 139
+C +C EY + I+P C H++ + CI +L + CP C V++ E P+ K
Sbjct: 24 RCGICF-EYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE-PDLK 73
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 80 AAAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVC 128
++ + C +CL + H + + CGH H TC + L + CP+C
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 87 CAVCLAEYHGEDTL-RILPYCGHSFHATCIDIWLHQHSTCPVC 128
C +CL + H + +LP CGH H TC + L + CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 83 EDTQCAVCLAEYHGEDTLRIL-PYCGHSFHATCID-IWLHQHSTCPVCRVSLRELPERKR 140
+D C C + +L+++ CGH+ +C+D +++ CP C LR+ R +
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61
Query: 141 LMQ 143
L +
Sbjct: 62 LFE 64
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCI------DIWLHQHSTCPVCRVSLRELP 136
E+ C +CL +L CGHSF C+ + S+CPVCR+S + P
Sbjct: 18 EEVTCPICLELLTQPLSLD----CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ--P 71
Query: 137 ERKR 140
E R
Sbjct: 72 ENIR 75
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 63 PVVVANFPMKKFSDEYFAAAEDTQCAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWL 119
P K++ Y + C +C+ Y L + CGH F + C+ L
Sbjct: 52 PTCRKKINHKRYHPIYIGSGT-VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 110
Query: 120 HQHSTCPVCRVSL 132
+TCP CR +
Sbjct: 111 KNANTCPTCRKKI 123
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 87 CAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
C +C+ Y L + CGH F + C+ L +TCP CR +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 106 CGHSFHATCIDIWLHQHSTCPVCRVSLRE 134
C HSF TCI +L CP+C V + +
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 106 CGHSFHATCIDIWLHQHSTCPVCRVSLRE 134
C HSF TCI +L CP+C V + +
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 106 CGHSFHATCIDIWLHQHSTCPVCRVSLRE 134
C HSF TCI +L CP+C V + +
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPV 127
+C A E+ C H+FH CI WL CP+
Sbjct: 53 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPV 127
+C A E+ C H+FH CI WL CP+
Sbjct: 55 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 87 CAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
C +C+ Y L + CGH F + C+ L +TCP CR +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPV 127
+C A E+ C H+FH CI WL CP+
Sbjct: 64 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPV 127
+C A E+ C H+FH CI WL CP+
Sbjct: 53 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 87 CAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
C +C+ Y L + CGH F + C+ L +TCP CR +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 106 CGHSFHATCIDIWLHQHSTCPV 127
C H+FH CI WL CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPV 127
+C A E+ C H+FH CI WL CP+
Sbjct: 45 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 106 CGHSFHATCIDIWLHQHSTCPV 127
C H+FH CI WL CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 87 CAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132
C +C+ Y L + CGH F + C+ L +TCP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,984,539
Number of Sequences: 62578
Number of extensions: 281052
Number of successful extensions: 478
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 37
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)