Query 027163
Match_columns 227
No_of_seqs 356 out of 1979
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.5E-18 5E-23 122.8 6.9 77 57-134 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.1E-17 1E-21 111.7 2.5 67 66-134 6-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 7.5E-16 2.6E-20 98.3 4.0 52 82-133 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 1.6E-15 5.6E-20 102.7 4.3 54 82-136 13-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 3.4E-15 1.2E-19 99.7 4.8 52 82-134 12-63 (69)
6 2ect_A Ring finger protein 126 99.5 3.8E-15 1.3E-19 101.8 4.4 52 82-134 13-64 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 5.9E-15 2E-19 101.9 4.3 52 83-134 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 1.7E-14 5.9E-19 91.8 4.0 51 82-133 3-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 2.9E-14 1E-18 104.4 5.2 53 83-136 24-96 (114)
10 3ng2_A RNF4, snurf, ring finge 99.4 2.9E-14 1E-18 95.5 2.8 52 82-134 8-63 (71)
11 3dpl_R Ring-box protein 1; ubi 99.4 6.6E-14 2.3E-18 101.3 4.7 51 82-133 35-100 (106)
12 2ea6_A Ring finger protein 4; 99.4 4.9E-14 1.7E-18 93.7 2.8 51 82-133 13-67 (69)
13 2xeu_A Ring finger protein 4; 99.4 7E-14 2.4E-18 91.6 2.7 51 83-134 2-56 (64)
14 2d8s_A Cellular modulator of i 99.4 1.1E-13 3.7E-18 95.1 3.4 53 80-134 11-70 (80)
15 2d8t_A Dactylidin, ring finger 99.4 1.5E-13 5.1E-18 92.2 3.0 49 82-134 13-61 (71)
16 1chc_A Equine herpes virus-1 r 99.4 2.8E-13 9.4E-18 90.0 3.6 50 82-134 3-52 (68)
17 2djb_A Polycomb group ring fin 99.4 4.5E-13 1.5E-17 90.1 4.3 50 82-134 13-62 (72)
18 2ecn_A Ring finger protein 141 99.4 1.8E-13 6.1E-18 91.5 2.2 48 82-134 13-60 (70)
19 4a0k_B E3 ubiquitin-protein li 99.3 1.2E-13 4E-18 101.5 0.2 51 82-133 46-111 (117)
20 4ayc_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 101.3 3.1 50 83-136 52-101 (138)
21 2csy_A Zinc finger protein 183 99.3 9.3E-13 3.2E-17 90.6 3.7 48 82-133 13-60 (81)
22 3lrq_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 94.8 3.2 49 82-134 20-70 (100)
23 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.6E-17 88.3 4.0 49 82-133 13-63 (74)
24 2ct2_A Tripartite motif protei 99.3 1.6E-12 5.4E-17 90.5 4.3 52 82-134 13-68 (88)
25 2ecy_A TNF receptor-associated 99.3 1.7E-12 5.7E-17 85.7 3.9 49 82-134 13-62 (66)
26 2ysl_A Tripartite motif-contai 99.3 2.2E-12 7.7E-17 86.7 4.5 49 82-134 18-69 (73)
27 1t1h_A Gspef-atpub14, armadill 99.3 4E-12 1.4E-16 86.6 4.7 49 82-134 6-55 (78)
28 2y43_A E3 ubiquitin-protein li 99.2 4.1E-12 1.4E-16 90.6 4.0 50 82-134 20-69 (99)
29 2ysj_A Tripartite motif-contai 99.2 8E-12 2.7E-16 81.6 4.5 43 82-128 18-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 4E-12 1.4E-16 94.9 3.5 53 82-135 5-61 (133)
31 2ct0_A Non-SMC element 1 homol 99.2 6.6E-12 2.3E-16 84.6 4.1 50 82-134 13-64 (74)
32 2ckl_A Polycomb group ring fin 99.2 6.6E-12 2.2E-16 91.0 4.2 51 82-135 13-63 (108)
33 2egp_A Tripartite motif-contai 99.2 3.2E-12 1.1E-16 87.2 2.0 49 82-134 10-65 (79)
34 2ecw_A Tripartite motif-contai 99.2 8.2E-12 2.8E-16 86.1 4.1 49 82-134 17-71 (85)
35 1g25_A CDK-activating kinase a 99.2 8.9E-12 3E-16 81.9 4.0 51 83-134 2-55 (65)
36 3fl2_A E3 ubiquitin-protein li 99.2 8.5E-12 2.9E-16 92.6 3.5 49 82-134 50-99 (124)
37 2ecv_A Tripartite motif-contai 99.2 9.3E-12 3.2E-16 85.8 3.3 49 82-134 17-71 (85)
38 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4.2E-16 79.2 3.6 43 82-128 13-58 (58)
39 3ztg_A E3 ubiquitin-protein li 99.2 1.6E-11 5.6E-16 86.2 4.0 49 82-133 11-61 (92)
40 1jm7_A BRCA1, breast cancer ty 99.1 2.4E-11 8.3E-16 88.3 3.5 48 83-134 20-70 (112)
41 2ckl_B Ubiquitin ligase protei 99.1 2.2E-11 7.5E-16 94.8 3.5 50 83-135 53-103 (165)
42 1z6u_A NP95-like ring finger p 99.1 4.6E-11 1.6E-15 91.7 4.9 49 83-135 77-126 (150)
43 4ap4_A E3 ubiquitin ligase RNF 99.1 2.4E-11 8.2E-16 90.7 2.6 52 82-134 70-125 (133)
44 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 90.2 0.8 49 82-134 13-62 (115)
45 3hct_A TNF receptor-associated 99.1 4.5E-11 1.5E-15 88.0 2.9 49 82-134 16-65 (118)
46 1e4u_A Transcriptional repress 99.1 1E-10 3.6E-15 79.8 4.0 53 82-135 9-63 (78)
47 1rmd_A RAG1; V(D)J recombinati 99.0 6.1E-11 2.1E-15 86.9 2.9 48 83-134 22-70 (116)
48 2kr4_A Ubiquitin conjugation f 99.0 1.1E-10 3.9E-15 80.9 3.5 49 82-134 12-60 (85)
49 2vje_A E3 ubiquitin-protein li 99.0 9E-11 3.1E-15 77.0 2.5 50 82-134 6-57 (64)
50 2kre_A Ubiquitin conjugation f 99.0 1.5E-10 5.2E-15 82.7 3.7 49 82-134 27-75 (100)
51 3knv_A TNF receptor-associated 99.0 1.5E-10 5E-15 88.0 3.7 49 81-133 28-77 (141)
52 1wgm_A Ubiquitin conjugation f 99.0 2.4E-10 8.3E-15 81.4 4.1 49 82-134 20-69 (98)
53 1bor_A Transcription factor PM 99.0 9.1E-11 3.1E-15 74.9 1.2 46 82-134 4-49 (56)
54 2y1n_A E3 ubiquitin-protein li 99.0 3.5E-10 1.2E-14 98.7 4.3 47 84-134 332-379 (389)
55 2vje_B MDM4 protein; proto-onc 99.0 2.5E-10 8.5E-15 74.7 2.5 51 82-134 5-56 (63)
56 1jm7_B BARD1, BRCA1-associated 98.9 1.6E-10 5.4E-15 84.9 1.6 47 82-134 20-67 (117)
57 2yu4_A E3 SUMO-protein ligase 98.9 8.4E-10 2.9E-14 77.9 4.2 47 82-131 5-59 (94)
58 4ic3_A E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 76.8 1.2 45 82-134 22-67 (74)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 8.4E-10 2.9E-14 94.0 1.3 52 82-133 306-372 (381)
60 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.5E-14 83.8 2.9 49 82-134 16-65 (170)
61 2c2l_A CHIP, carboxy terminus 98.8 3.2E-09 1.1E-13 88.7 3.3 49 82-134 206-255 (281)
62 1wim_A KIAA0161 protein; ring 98.7 4.3E-09 1.5E-13 74.1 3.0 49 82-131 3-61 (94)
63 2ecg_A Baculoviral IAP repeat- 98.7 2.9E-09 9.9E-14 71.9 1.9 44 83-134 24-68 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.7 9.2E-09 3.1E-13 66.4 3.2 48 82-133 4-58 (60)
65 2ea5_A Cell growth regulator w 98.7 1E-08 3.6E-13 67.9 3.4 45 82-134 13-58 (68)
66 2f42_A STIP1 homology and U-bo 98.7 9E-09 3.1E-13 80.8 3.5 49 82-134 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.6 6.9E-09 2.3E-13 70.8 0.8 44 83-134 17-61 (79)
68 3htk_C E3 SUMO-protein ligase 98.5 6.3E-08 2.1E-12 79.9 3.1 49 83-134 180-232 (267)
69 2bay_A PRE-mRNA splicing facto 98.4 6.3E-08 2.2E-12 62.6 2.0 46 85-134 4-50 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 3.7E-08 1.3E-12 85.1 1.0 45 82-134 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 5.2E-07 1.8E-11 63.2 3.9 49 86-137 3-52 (101)
72 3nw0_A Non-structural maintena 98.0 4.9E-06 1.7E-10 68.2 4.9 49 83-134 179-229 (238)
73 2lri_C Autoimmune regulator; Z 95.6 0.008 2.7E-07 38.9 3.0 48 82-133 10-61 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0093 3.2E-07 41.6 3.4 35 83-118 2-36 (101)
75 2ko5_A Ring finger protein Z; 95.5 0.0046 1.6E-07 42.5 1.4 47 83-134 27-73 (99)
76 1we9_A PHD finger family prote 92.6 0.032 1.1E-06 35.6 0.8 50 82-131 4-58 (64)
77 2l5u_A Chromodomain-helicase-D 90.8 0.15 5E-06 32.2 2.5 45 82-130 9-57 (61)
78 3pg6_A E3 ubiquitin-protein li 90.1 0.0094 3.2E-07 44.9 -4.2 77 123-199 13-89 (159)
79 2l2t_A Receptor tyrosine-prote 89.9 0.6 2E-05 27.4 4.4 10 11-20 12-21 (44)
80 1wil_A KIAA1045 protein; ring 89.1 0.28 9.7E-06 32.9 2.9 35 82-118 13-47 (89)
81 3lqh_A Histone-lysine N-methyl 88.9 0.16 5.6E-06 39.5 1.8 51 84-134 2-66 (183)
82 1f62_A Transcription factor WS 88.4 0.24 8.1E-06 29.9 2.0 44 86-130 2-49 (51)
83 3o36_A Transcription intermedi 87.7 0.12 4.3E-06 40.0 0.5 46 83-132 3-52 (184)
84 3u5n_A E3 ubiquitin-protein li 87.4 0.15 5E-06 40.4 0.7 47 82-132 5-55 (207)
85 2k16_A Transcription initiatio 87.2 0.19 6.6E-06 32.9 1.1 51 82-133 16-70 (75)
86 1xwh_A Autoimmune regulator; P 86.3 0.11 3.7E-06 33.4 -0.5 46 82-131 6-55 (66)
87 2vpb_A Hpygo1, pygopus homolog 85.9 0.65 2.2E-05 29.6 3.1 34 82-115 6-40 (65)
88 2kgg_A Histone demethylase jar 85.6 0.78 2.7E-05 27.7 3.2 44 86-129 4-52 (52)
89 2yql_A PHD finger protein 21A; 85.5 0.11 3.8E-06 32.2 -0.8 45 82-130 7-55 (56)
90 1mm2_A MI2-beta; PHD, zinc fin 84.9 0.18 6E-06 31.9 -0.0 47 82-132 7-57 (61)
91 2klu_A T-cell surface glycopro 83.5 2.8 9.6E-05 26.7 5.1 7 106-112 59-65 (70)
92 1fp0_A KAP-1 corepressor; PHD 83.0 0.35 1.2E-05 32.9 0.8 47 81-131 22-72 (88)
93 2l43_A N-teminal domain from h 82.8 0.46 1.6E-05 32.3 1.4 51 82-132 23-76 (88)
94 3v43_A Histone acetyltransfera 82.8 0.37 1.3E-05 34.2 1.0 46 85-130 62-111 (112)
95 2ku3_A Bromodomain-containing 82.1 0.56 1.9E-05 30.5 1.6 49 82-130 14-65 (71)
96 2puy_A PHD finger protein 21A; 81.7 0.23 7.8E-06 31.1 -0.5 46 83-132 4-53 (60)
97 1weo_A Cellulose synthase, cat 81.6 2.7 9.4E-05 28.4 4.8 52 83-134 15-70 (93)
98 2ri7_A Nucleosome-remodeling f 81.1 0.88 3E-05 34.6 2.6 49 82-131 6-59 (174)
99 1wep_A PHF8; structural genomi 80.9 0.96 3.3E-05 29.9 2.4 49 83-132 11-64 (79)
100 2ysm_A Myeloid/lymphoid or mix 80.9 0.45 1.5E-05 33.6 0.8 47 82-129 5-55 (111)
101 1wev_A Riken cDNA 1110020M19; 80.3 0.16 5.4E-06 34.6 -1.7 52 83-134 15-75 (88)
102 2lbm_A Transcriptional regulat 80.0 2.2 7.6E-05 31.6 4.4 45 82-130 61-116 (142)
103 2e6r_A Jumonji/ARID domain-con 79.1 0.22 7.6E-06 34.2 -1.3 49 82-131 14-66 (92)
104 1y02_A CARP2, FYVE-ring finger 78.7 0.3 1E-05 35.3 -0.7 50 83-132 18-67 (120)
105 2lv9_A Histone-lysine N-methyl 78.6 0.74 2.5E-05 31.8 1.3 47 83-131 27-76 (98)
106 3m62_A Ubiquitin conjugation f 78.2 1.8 6.2E-05 41.8 4.2 49 82-134 889-938 (968)
107 2yt5_A Metal-response element- 78.1 1.2 4.1E-05 28.1 2.1 50 82-131 4-61 (66)
108 1wem_A Death associated transc 77.8 0.79 2.7E-05 30.0 1.2 47 84-132 16-71 (76)
109 2jwa_A Receptor tyrosine-prote 77.4 5.5 0.00019 23.2 4.6 16 12-27 14-29 (44)
110 2cs3_A Protein C14ORF4, MY039 77.1 4.8 0.00016 26.7 4.8 40 82-121 13-52 (93)
111 2ro1_A Transcription intermedi 76.8 0.52 1.8E-05 36.7 0.1 44 84-131 2-49 (189)
112 1z60_A TFIIH basal transcripti 76.7 1.4 4.7E-05 27.6 2.0 43 85-128 16-58 (59)
113 2l2t_A Receptor tyrosine-prote 74.8 5.2 0.00018 23.4 4.0 17 7-23 11-27 (44)
114 2xb1_A Pygopus homolog 2, B-ce 74.3 1.7 5.7E-05 30.5 2.2 49 84-132 3-62 (105)
115 3ql9_A Transcriptional regulat 73.2 5.1 0.00017 29.1 4.6 45 82-130 55-110 (129)
116 1wew_A DNA-binding family prot 73.2 1.1 3.9E-05 29.4 1.1 50 82-132 14-73 (78)
117 2k9y_A Ephrin type-A receptor 72.9 0.85 2.9E-05 26.1 0.3 13 11-23 15-27 (41)
118 2k1k_A Ephrin type-A receptor 72.5 4 0.00014 23.0 3.1 18 7-24 12-29 (38)
119 3o70_A PHD finger protein 13; 71.7 0.91 3.1E-05 29.2 0.3 47 82-130 17-66 (68)
120 3v43_A Histone acetyltransfera 71.1 6.3 0.00021 27.6 4.7 34 83-116 4-42 (112)
121 1wee_A PHD finger family prote 70.5 0.8 2.7E-05 29.7 -0.2 48 83-131 15-66 (72)
122 3shb_A E3 ubiquitin-protein li 69.8 0.84 2.9E-05 30.2 -0.2 44 86-130 28-76 (77)
123 3t7l_A Zinc finger FYVE domain 69.7 3.1 0.00011 28.1 2.7 36 83-118 19-54 (90)
124 2yw8_A RUN and FYVE domain-con 69.4 3.1 0.00011 27.5 2.6 35 83-117 18-52 (82)
125 1wfk_A Zinc finger, FYVE domai 67.4 4 0.00014 27.5 2.8 36 82-117 7-42 (88)
126 1joc_A EEA1, early endosomal a 65.9 3.9 0.00013 29.5 2.7 35 83-117 68-102 (125)
127 1vfy_A Phosphatidylinositol-3- 65.3 4.5 0.00015 26.1 2.7 32 85-116 12-43 (73)
128 2e6s_A E3 ubiquitin-protein li 65.1 1.4 4.8E-05 29.0 0.1 45 85-130 27-76 (77)
129 3asl_A E3 ubiquitin-protein li 65.1 1.6 5.3E-05 28.2 0.3 44 86-130 20-68 (70)
130 1wen_A Inhibitor of growth fam 65.0 3.4 0.00012 26.7 2.0 46 82-132 14-66 (71)
131 2lk9_A Bone marrow stromal ant 64.1 9.2 0.00031 20.8 3.2 19 6-24 9-27 (35)
132 1weu_A Inhibitor of growth fam 63.4 3.6 0.00012 28.0 1.9 46 82-132 34-86 (91)
133 1z2q_A LM5-1; membrane protein 63.2 4.9 0.00017 26.7 2.6 37 82-118 19-55 (84)
134 1zbd_B Rabphilin-3A; G protein 62.8 4.5 0.00015 29.6 2.5 48 82-130 53-106 (134)
135 2l8s_A Integrin alpha-1; trans 62.6 23 0.0008 21.5 5.3 26 10-35 11-37 (54)
136 3i2d_A E3 SUMO-protein ligase 61.5 6.7 0.00023 33.7 3.7 46 85-133 250-299 (371)
137 3c6w_A P28ING5, inhibitor of g 60.4 3.7 0.00013 25.4 1.5 43 83-130 8-57 (59)
138 2vnf_A ING 4, P29ING4, inhibit 60.1 3.5 0.00012 25.6 1.3 43 83-130 9-58 (60)
139 2kwj_A Zinc finger protein DPF 59.8 6 0.00021 27.8 2.7 34 85-118 2-41 (114)
140 1dvp_A HRS, hepatocyte growth 59.6 4.4 0.00015 32.0 2.2 34 84-117 161-194 (220)
141 4gne_A Histone-lysine N-methyl 59.3 7.7 0.00026 27.2 3.1 46 82-133 13-64 (107)
142 1x4u_A Zinc finger, FYVE domai 59.2 5.8 0.0002 26.3 2.4 34 83-116 13-46 (84)
143 3ask_A E3 ubiquitin-protein li 59.1 2.3 7.8E-05 34.1 0.4 44 86-130 176-224 (226)
144 3zyq_A Hepatocyte growth facto 59.1 4.7 0.00016 32.1 2.2 35 84-118 164-198 (226)
145 4fo9_A E3 SUMO-protein ligase 58.6 8.1 0.00028 33.1 3.7 46 85-133 216-265 (360)
146 2rsd_A E3 SUMO-protein ligase 58.6 1.2 4.2E-05 28.4 -1.1 47 83-130 9-64 (68)
147 2knc_B Integrin beta-3; transm 58.4 7.3 0.00025 25.7 2.7 11 10-20 12-22 (79)
148 2ysm_A Myeloid/lymphoid or mix 58.3 1.8 6E-05 30.4 -0.4 45 86-131 56-104 (111)
149 3mjh_B Early endosome antigen 57.8 1.4 4.7E-05 24.3 -0.8 16 83-98 4-19 (34)
150 2klu_A T-cell surface glycopro 57.7 16 0.00056 23.1 4.1 10 21-30 20-29 (70)
151 2knc_A Integrin alpha-IIB; tra 57.3 30 0.001 21.0 6.1 28 8-35 12-40 (54)
152 3a1b_A DNA (cytosine-5)-methyl 53.0 13 0.00043 28.0 3.6 36 82-121 77-114 (159)
153 2gmg_A Hypothetical protein PF 52.9 3.1 0.00011 29.1 0.2 27 105-136 72-98 (105)
154 3o7a_A PHD finger protein 13 v 52.3 3.4 0.00012 24.8 0.3 41 89-130 8-51 (52)
155 2knc_B Integrin beta-3; transm 51.4 28 0.00097 22.8 4.7 22 8-29 13-34 (79)
156 2k9j_B Integrin beta-3; transm 51.0 31 0.001 19.8 4.3 16 7-22 8-23 (43)
157 2o35_A Hypothetical protein DU 50.8 5.7 0.0002 27.4 1.2 12 110-121 43-54 (105)
158 3fyb_A Protein of unknown func 50.7 5.8 0.0002 27.3 1.2 11 110-120 42-52 (104)
159 2kwj_A Zinc finger protein DPF 50.5 2.1 7.2E-05 30.3 -1.0 46 86-132 60-109 (114)
160 3mpx_A FYVE, rhogef and PH dom 50.3 3.3 0.00011 35.9 0.0 50 83-132 374-430 (434)
161 2g6q_A Inhibitor of growth pro 49.5 5.2 0.00018 25.0 0.8 44 82-130 9-59 (62)
162 3kqi_A GRC5, PHD finger protei 48.3 5.7 0.00019 25.7 0.9 46 85-131 11-61 (75)
163 2d8v_A Zinc finger FYVE domain 47.4 11 0.00038 23.9 2.1 32 82-118 6-38 (67)
164 1x64_A Alpha-actinin-2 associa 46.1 17 0.00058 23.8 3.1 41 82-134 23-63 (89)
165 2zet_C Melanophilin; complex, 46.0 11 0.00038 28.1 2.3 47 83-131 67-117 (153)
166 2cu8_A Cysteine-rich protein 2 45.8 18 0.00062 22.8 3.1 40 84-134 9-48 (76)
167 2pv0_B DNA (cytosine-5)-methyl 44.8 15 0.00051 31.7 3.2 46 82-131 91-148 (386)
168 1g47_A Pinch protein; LIM doma 44.5 15 0.00051 23.2 2.5 42 83-134 10-51 (77)
169 1wd2_A Ariadne-1 protein homol 42.3 2.2 7.6E-05 26.6 -1.8 37 84-120 6-46 (60)
170 1wyh_A SLIM 2, skeletal muscle 41.7 21 0.0007 22.1 2.9 41 84-134 5-45 (72)
171 2l9u_A Receptor tyrosine-prote 41.4 43 0.0015 18.3 5.3 12 6-17 6-17 (40)
172 2jmo_A Parkin; IBR, E3 ligase, 41.0 2.4 8.3E-05 28.0 -1.9 20 105-126 55-74 (80)
173 2dj7_A Actin-binding LIM prote 40.4 21 0.00073 22.9 2.8 40 83-133 14-53 (80)
174 1x4k_A Skeletal muscle LIM-pro 40.0 20 0.0007 22.2 2.6 40 85-134 6-45 (72)
175 1iml_A CRIP, cysteine rich int 39.7 16 0.00056 23.0 2.1 25 87-114 3-27 (76)
176 1zfo_A LAsp-1; LIM domain, zin 39.6 14 0.00047 19.5 1.4 28 85-115 4-31 (31)
177 1x61_A Thyroid receptor intera 39.6 25 0.00086 21.7 3.0 40 84-133 5-44 (72)
178 2ct7_A Ring finger protein 31; 39.2 2.4 8.2E-05 28.4 -2.1 18 101-118 44-61 (86)
179 3kv5_D JMJC domain-containing 38.5 7.9 0.00027 34.6 0.5 49 83-132 36-89 (488)
180 2co8_A NEDD9 interacting prote 38.3 22 0.00075 22.9 2.6 41 83-134 14-54 (82)
181 1x4l_A Skeletal muscle LIM-pro 37.9 33 0.0011 21.2 3.4 41 84-134 5-47 (72)
182 1x63_A Skeletal muscle LIM-pro 37.1 30 0.001 22.0 3.1 41 84-134 15-55 (82)
183 1zza_A Stannin, AG8_1; helix, 36.7 37 0.0013 21.9 3.3 7 12-18 17-23 (90)
184 2k1a_A Integrin alpha-IIB; sin 36.2 49 0.0017 18.9 3.5 25 8-32 10-35 (42)
185 3f6q_B LIM and senescent cell 35.2 27 0.00094 21.4 2.7 42 83-134 10-51 (72)
186 1a7i_A QCRP2 (LIM1); LIM domai 32.1 17 0.00059 23.2 1.3 40 84-134 7-46 (81)
187 2d8y_A Eplin protein; LIM doma 32.1 39 0.0013 22.1 3.1 41 83-134 14-54 (91)
188 2l4z_A DNA endonuclease RBBP8, 31.3 29 0.00098 24.5 2.5 39 84-133 61-99 (123)
189 2d8x_A Protein pinch; LIM doma 30.4 43 0.0015 20.5 3.0 40 84-135 5-44 (70)
190 1x68_A FHL5 protein; four-and- 30.3 37 0.0012 21.3 2.7 39 85-133 6-46 (76)
191 2jvx_A NF-kappa-B essential mo 29.3 15 0.00051 19.2 0.4 13 123-135 4-16 (28)
192 3arc_J Photosystem II reaction 29.2 75 0.0026 17.8 3.3 22 6-27 10-31 (40)
193 3arc_M Photosystem II reaction 29.1 77 0.0026 17.4 3.8 19 7-25 7-25 (36)
194 2pk7_A Uncharacterized protein 28.5 12 0.00041 24.0 -0.0 19 116-134 2-20 (69)
195 2jo1_A Phospholemman; FXYD1, N 28.4 1.1E+02 0.0036 19.6 4.4 6 27-32 38-43 (72)
196 2l3k_A Rhombotin-2, linker, LI 28.2 26 0.00088 24.6 1.8 37 86-132 10-46 (123)
197 2lcq_A Putative toxin VAPC6; P 27.5 12 0.00043 27.8 -0.1 26 104-135 136-161 (165)
198 1nyp_A Pinch protein; LIM doma 27.1 38 0.0013 20.5 2.2 39 84-134 5-43 (66)
199 2jny_A Uncharacterized BCR; st 27.0 11 0.00038 24.0 -0.4 19 116-134 4-22 (67)
200 2jne_A Hypothetical protein YF 26.6 19 0.00066 24.7 0.7 43 84-135 32-74 (101)
201 2d8z_A Four and A half LIM dom 26.5 65 0.0022 19.6 3.3 38 84-133 5-42 (70)
202 2dar_A PDZ and LIM domain prot 25.7 47 0.0016 21.6 2.6 40 83-134 24-63 (90)
203 2das_A Zinc finger MYM-type pr 25.6 67 0.0023 19.9 3.0 36 83-118 19-55 (62)
204 1x62_A C-terminal LIM domain p 25.0 40 0.0014 21.3 2.1 39 83-133 14-52 (79)
205 1m3v_A FLIN4, fusion of the LI 25.0 61 0.0021 22.5 3.3 49 84-134 32-81 (122)
206 2cor_A Pinch protein; LIM doma 24.8 52 0.0018 20.9 2.6 40 83-134 14-53 (79)
207 3kv4_A PHD finger protein 8; e 23.1 20 0.0007 31.5 0.4 48 86-133 6-58 (447)
208 1v6g_A Actin binding LIM prote 23.0 57 0.002 20.6 2.6 38 85-134 16-53 (81)
209 2kpi_A Uncharacterized protein 21.1 34 0.0012 20.7 1.1 13 83-95 9-21 (56)
210 2cup_A Skeletal muscle LIM-pro 20.9 88 0.003 20.5 3.3 24 107-132 53-76 (101)
211 1loi_A Cyclic 3',5'-AMP specif 20.8 5.5 0.00019 19.7 -2.1 11 109-119 6-16 (26)
212 2jrp_A Putative cytoplasmic pr 20.5 39 0.0013 22.3 1.3 41 85-134 3-43 (81)
213 2ehe_A Four and A half LIM dom 20.1 63 0.0022 20.4 2.3 40 85-134 16-55 (82)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=122.76 Aligned_cols=77 Identities=30% Similarity=0.670 Sum_probs=68.5
Q ss_pred cCCCCCHHHHhhCCceecchhhhcCCcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 57 GLHGVEPVVVANFPMKKFSDEYFAAAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 57 ~~~~l~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...+++++.+++||...+........++..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 446899999999999998876655667789999999999888889998 99999999999999999999999998853
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-17 Score=111.66 Aligned_cols=67 Identities=37% Similarity=0.951 Sum_probs=57.0
Q ss_pred HhhCCceecchhhhcCCcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 66 VANFPMKKFSDEYFAAAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 66 ~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
++.||..++.... ...++..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 6 i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 6 SGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred HhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567888776543 2356689999999999998889998 99999999999999999999999998864
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=7.5e-16 Score=98.26 Aligned_cols=52 Identities=52% Similarity=1.211 Sum_probs=46.6
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
+++.+|+||++.|..++.+..++.|+|.||..||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567999999999988888888679999999999999999999999998763
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=102.67 Aligned_cols=54 Identities=37% Similarity=0.924 Sum_probs=48.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRELP 136 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 136 (227)
..+..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45679999999999988888888 9999999999999999899999999986543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=99.70 Aligned_cols=52 Identities=37% Similarity=0.993 Sum_probs=47.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..+..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 45678999999998888888898 99999999999999999999999999865
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=3.8e-15 Score=101.85 Aligned_cols=52 Identities=46% Similarity=1.039 Sum_probs=47.7
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 45679999999999888888898 99999999999999999999999999865
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.9e-15 Score=101.85 Aligned_cols=52 Identities=33% Similarity=0.839 Sum_probs=42.6
Q ss_pred cccccccccccccC-----------CceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHG-----------EDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
++..|+||++.|.. ++.++.++.|+|.||..||..|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 56779999888854 34455555699999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=1.7e-14 Score=91.79 Aligned_cols=51 Identities=31% Similarity=0.794 Sum_probs=43.6
Q ss_pred CcccccccccccccCC-ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGE-DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
.++..|+||++.+.+. ..++.++ |+|.||..||..|+..+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999999654 3567777 9999999999999998899999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.48 E-value=2.9e-14 Score=104.44 Aligned_cols=53 Identities=23% Similarity=0.605 Sum_probs=42.9
Q ss_pred cccccccccccccCCc---------------eeEEcCCCCCcccHhhHHHHH-----cCCCCCccccccCccCc
Q 027163 83 EDTQCAVCLAEYHGED---------------TLRILPYCGHSFHATCIDIWL-----HQHSTCPVCRVSLRELP 136 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~ 136 (227)
.+..|+||++.|..+. .+++++ |+|.||..||..|+ ..+.+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4568999999996643 344676 99999999999999 45678999999886543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=2.9e-14 Score=95.47 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=44.8
Q ss_pred CcccccccccccccCC----ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGE----DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ ..++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 5678999999998654 4456777 99999999999999999999999998864
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.44 E-value=6.6e-14 Score=101.35 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=43.3
Q ss_pred CcccccccccccccCCc---------------eeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGED---------------TLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
.++..|+||++.|..+- .++.++ |+|.||..||..||..+.+||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 45789999999997541 356676 9999999999999999999999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-14 Score=93.74 Aligned_cols=51 Identities=27% Similarity=0.718 Sum_probs=43.7
Q ss_pred CcccccccccccccCC----ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGE----DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
.+...|+||++.|.++ ..+..++ |+|.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4567899999999754 3446777 9999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=7e-14 Score=91.57 Aligned_cols=51 Identities=27% Similarity=0.699 Sum_probs=43.6
Q ss_pred cccccccccccccCC----ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGE----DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
++.+|+||++.+.++ ..+..++ |+|.||..|+..|+..+..||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999998754 3456777 99999999999999999999999998864
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=95.15 Aligned_cols=53 Identities=26% Similarity=0.740 Sum_probs=44.1
Q ss_pred cCCcccccccccccccCCceeEEcCCCC-----CcccHhhHHHHHcCC--CCCccccccCcc
Q 027163 80 AAAEDTQCAVCLAEYHGEDTLRILPYCG-----HSFHATCIDIWLHQH--STCPVCRVSLRE 134 (227)
Q Consensus 80 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 134 (227)
...++..|.||++++..++.+ ++| |+ |.||..||+.|+..+ .+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345667999999999876666 588 86 999999999999865 589999999854
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=92.22 Aligned_cols=49 Identities=29% Similarity=0.584 Sum_probs=42.7
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ +.++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999998655 5667 99999999999999999999999999854
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.37 E-value=2.8e-13 Score=89.99 Aligned_cols=50 Identities=34% Similarity=0.872 Sum_probs=43.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..+..|+||++.+.++ ++.++ |+|.||..|+..|+..+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3567899999998653 46777 99999999999999988999999998854
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.5e-13 Score=90.10 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=42.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.+.++ +.+++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4567999999999765 33346 99999999999999988999999998864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=91.47 Aligned_cols=48 Identities=38% Similarity=1.063 Sum_probs=42.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.+.+ +.++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456799999999865 5677 99999999999999999999999998864
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.2e-13 Score=101.50 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=1.6
Q ss_pred CcccccccccccccCCc---------------eeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGED---------------TLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
..+..|+||++.|..+. .+..++ |+|.||..||..||..+.+||+||.++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45679999999997531 223345 9999999999999999999999999863
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.9e-13 Score=101.32 Aligned_cols=50 Identities=30% Similarity=0.846 Sum_probs=43.3
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccCc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRELP 136 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 136 (227)
++..|+||++.|.++ ++++ |||.||..||..|+..+.+||+||..+...+
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 456899999999765 5677 9999999999999999999999999986543
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.3e-13 Score=90.56 Aligned_cols=48 Identities=17% Similarity=0.482 Sum_probs=42.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
.....|+||++.|.++ ++++ |+|.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999765 4677 9999999999999998899999999985
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=7.6e-13 Score=94.81 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=42.1
Q ss_pred CcccccccccccccCCceeEE-cCCCCCcccHhhHHHHHcCC-CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRI-LPYCGHSFHATCIDIWLHQH-STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ +. ++ |||.||..||..|+..+ ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4567999999999754 44 76 99999999999999887 689999999864
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=88.26 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=41.0
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC--CCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH--STCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~ 133 (227)
.++..|+||++.|.++ +.++.|+|.||..||..|+..+ ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4567999999999876 4455599999999999999765 68999999754
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=90.53 Aligned_cols=52 Identities=27% Similarity=0.717 Sum_probs=43.8
Q ss_pred CcccccccccccccCCce-eEEcCCCCCcccHhhHHHHHcCC---CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDT-LRILPYCGHSFHATCIDIWLHQH---STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.+.+. .+.++ |+|.||..||..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456789999999987553 56777 99999999999999875 789999998754
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=85.74 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=41.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-CCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-QHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.+.++. .++ |||.||..||..|+. .+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45678999999998763 356 999999999999994 56789999998854
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=86.68 Aligned_cols=49 Identities=31% Similarity=0.743 Sum_probs=41.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc---CCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH---QHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ +.++ |+|.||..||..|+. ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567999999998754 5567 999999999999997 45689999998854
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=4e-12 Score=86.63 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=42.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-CCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ ++++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4568999999999776 4567 9999999999999987 7889999998864
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.1e-12 Score=90.65 Aligned_cols=50 Identities=26% Similarity=0.733 Sum_probs=42.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3467899999999764 33336 99999999999999998999999998865
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8e-12 Score=81.62 Aligned_cols=43 Identities=30% Similarity=0.750 Sum_probs=36.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc---CCCCCccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH---QHSTCPVC 128 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 128 (227)
.++..|+||++.+.++ +.++ |+|.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4568999999999866 5567 999999999999997 45689998
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4e-12 Score=94.91 Aligned_cols=53 Identities=26% Similarity=0.680 Sum_probs=45.2
Q ss_pred CcccccccccccccCC----ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccC
Q 027163 82 AEDTQCAVCLAEYHGE----DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 135 (227)
.++.+|+||++.|.++ ..++.++ |||.||..||..|+..+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4567999999999765 4456777 999999999999999999999999988653
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=84.62 Aligned_cols=50 Identities=18% Similarity=0.526 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC--CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH--STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 134 (227)
+...+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45679999999998664332 599999999999999887 789999998753
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=6.6e-12 Score=91.02 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=43.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 135 (227)
.++..|+||++.|.++ +.+++ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4568999999999754 33347 999999999999999999999999998753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.21 E-value=3.2e-12 Score=87.20 Aligned_cols=49 Identities=35% Similarity=0.758 Sum_probs=41.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-------CCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-------HSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4568999999999776 3467 9999999999999986 5689999998864
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=8.2e-12 Score=86.10 Aligned_cols=49 Identities=33% Similarity=0.731 Sum_probs=42.0
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC------CCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ------HSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4567999999999776 4677 9999999999999987 6689999998864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=8.9e-12 Score=81.94 Aligned_cols=51 Identities=27% Similarity=0.772 Sum_probs=41.0
Q ss_pred cccccccccc-cccCCcee-EEcCCCCCcccHhhHHHHHcC-CCCCccccccCcc
Q 027163 83 EDTQCAVCLA-EYHGEDTL-RILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~-~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 134 (227)
++..|+||++ .+.++... ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 78776543 3466 9999999999999765 4679999998864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=8.5e-12 Score=92.65 Aligned_cols=49 Identities=27% Similarity=0.563 Sum_probs=41.6
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC-CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH-STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ +.++ |||.||..||..|+..+ ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999999765 5567 99999999999999854 489999999865
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.3e-12 Score=85.81 Aligned_cols=49 Identities=37% Similarity=0.834 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC------CCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ------HSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.+.++ +.++ |+|.||..|+..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4567999999999766 4566 9999999999999976 6789999998864
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=79.18 Aligned_cols=43 Identities=37% Similarity=0.967 Sum_probs=36.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc---CCCCCccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH---QHSTCPVC 128 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 128 (227)
.+...|+||++.+.++ +.++ |+|.||..||..|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567999999999876 4566 999999999999954 56789998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=86.22 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=40.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC--CCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH--STCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~ 133 (227)
.++..|+||++.|.++ +.++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999999876 4555599999999999999643 58999999873
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.4e-11 Score=88.31 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=40.7
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCC---CCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHS---TCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~~~~ 134 (227)
+...|+||++.+.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456899999999766 3467 999999999999998653 89999998865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=2.2e-11 Score=94.82 Aligned_cols=50 Identities=30% Similarity=0.649 Sum_probs=41.9
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-CCCCccccccCccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLREL 135 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 135 (227)
+...|+||++.|.++ +.+++ |||.||..||..|+.. +..||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 456899999999764 44457 9999999999999987 77899999998643
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=4.6e-11 Score=91.68 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=41.9
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCC-CCccccccCccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHS-TCPVCRVSLREL 135 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 135 (227)
+...|+||++.|.++ +.++ |+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999766 4577 999999999999998764 899999998754
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=2.4e-11 Score=90.65 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=44.0
Q ss_pred CcccccccccccccCC----ceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGE----DTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|..+ ...+.++ |+|.||..||+.|+..+++||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4667899999998653 3345666 99999999999999999999999999864
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.09 E-value=1.4e-11 Score=90.22 Aligned_cols=49 Identities=24% Similarity=0.681 Sum_probs=41.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-CCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ +.++ |||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3567899999999766 5667 9999999999999976 5689999999864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=4.5e-11 Score=87.98 Aligned_cols=49 Identities=31% Similarity=0.638 Sum_probs=42.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCC-CCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHS-TCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ +.++ |||.||..||..|+..+. .||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4567999999999766 5567 999999999999998765 89999999865
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=1e-10 Score=79.77 Aligned_cols=53 Identities=21% Similarity=0.505 Sum_probs=40.6
Q ss_pred CcccccccccccccCCc-eeEEcCCCCCcccHhhHHHHHcC-CCCCccccccCccC
Q 027163 82 AEDTQCAVCLAEYHGED-TLRILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLREL 135 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 135 (227)
.++.+|+||++.+...+ .+..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 56789999999986433 222244 9999999999988743 56899999998653
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.05 E-value=6.1e-11 Score=86.92 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=41.4
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-CCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-HSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 134 (227)
++..|+||++.+.++ +.++ |||.||..||..|+.. +..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 457899999999765 4467 9999999999999986 6789999999865
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.03 E-value=1.1e-10 Score=80.94 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=43.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ ++++ |||.|+..||..|+..+.+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3568999999999887 6777 99999999999999988899999998864
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.02 E-value=9e-11 Score=77.02 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=40.8
Q ss_pred CcccccccccccccCCceeE-EcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLR-ILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~-~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|.||++.+.+. +. .+| |||. ||..|+..|...+..||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4567899999986543 22 248 9999 8999999999888899999998853
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.01 E-value=1.5e-10 Score=82.73 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=43.6
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ ++++ |||.|+..||..|+..+.+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4568999999999887 5677 99999999999999988999999998864
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=87.97 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=41.7
Q ss_pred CCcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCC-CCccccccCc
Q 027163 81 AAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHS-TCPVCRVSLR 133 (227)
Q Consensus 81 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~ 133 (227)
..++..|+||++.|.++ +.++ |||.||..||..|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678999999999877 4566 999999999999998664 8999999764
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=2.4e-10 Score=81.37 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=43.5
Q ss_pred CcccccccccccccCCceeEEcCCCC-CcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCG-HSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.|.++ ++++ || |.|+..||..|+..+.+||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3568999999999887 5677 99 999999999999988899999998864
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=9.1e-11 Score=74.87 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=38.7
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ +.++ |+|.||..|+..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 4567899999999876 5677 9999999999774 5689999998864
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=3.5e-10 Score=98.70 Aligned_cols=47 Identities=28% Similarity=0.825 Sum_probs=40.9
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-CCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-QHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 134 (227)
...|+||++.+.++ +.+| |||.||..|+..|+. ....||+||..+..
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899999998554 6677 999999999999998 67899999998865
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.95 E-value=2.5e-10 Score=74.65 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=40.6
Q ss_pred CcccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..+..|.||++...+. .+..+| |||. ||..|+..|...+..||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3457899999986543 122348 9998 9999999999888899999999854
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.6e-10 Score=84.93 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=40.3
Q ss_pred CcccccccccccccCCceeEEc-CCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRIL-PYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ +.+ + |||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 3567999999999776 455 6 999999999999987 789999999853
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=8.4e-10 Score=77.92 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=38.6
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC------CCCcc--cccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH------STCPV--CRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~ 131 (227)
.....|+||++.|.++ ++++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4568899999999876 4453499999999999999753 48999 9865
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.7e-10 Score=76.84 Aligned_cols=45 Identities=24% Similarity=0.686 Sum_probs=37.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3457899999987544 5678 9999 999999998 789999998854
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.80 E-value=8.4e-10 Score=94.03 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=39.4
Q ss_pred CcccccccccccccCCcee----EEcCCCCCcccHhhHHHHHcCC-----------CCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTL----RILPYCGHSFHATCIDIWLHQH-----------STCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~----~~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 133 (227)
+...+|+||++.+.+...+ -..+.|+|.||..|+.+||+.. ..||+||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999998762222 2223599999999999999742 35999999874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=2.2e-09 Score=83.76 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC-CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH-STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.++ +.++ |||.||..||..|+... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4678999999999876 4567 99999999999999764 489999998865
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=3.2e-09 Score=88.66 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=41.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC-CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH-STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 134 (227)
.....|+||++.|.+| ++++ |||.||..||..|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3567899999999877 5677 99999999999999764 459999998854
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=4.3e-09 Score=74.13 Aligned_cols=49 Identities=27% Similarity=0.656 Sum_probs=40.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC--------CCCCcc--cccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ--------HSTCPV--CRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 131 (227)
.+..+|+||++++..++.+.+.+ |+|.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999998877766666 9999999999988753 236999 9988
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.9e-09 Score=71.88 Aligned_cols=44 Identities=25% Similarity=0.708 Sum_probs=36.2
Q ss_pred cccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
++..|+||++.+.++ ..+| |+|. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 456899999998654 5677 9999 99999965 3789999998854
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.69 E-value=9.2e-09 Score=66.41 Aligned_cols=48 Identities=25% Similarity=0.728 Sum_probs=37.4
Q ss_pred CcccccccccccccCCceeEEcCCCC--C---cccHhhHHHHHcC--CCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCG--H---SFHATCIDIWLHQ--HSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 133 (227)
++...|.||+++.. +.+ ++| |. | .||..|+..|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 233 577 65 4 8999999999964 578999999874
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=67.88 Aligned_cols=45 Identities=29% Similarity=0.784 Sum_probs=37.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.+...|.||++... .+..+| |+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45678999999864 357888 9999 99999984 4789999999865
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=9e-09 Score=80.84 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC-CCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH-STCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 134 (227)
.+...|+||++.|.+| ++++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4567999999999877 5667 99999999999999763 579999998864
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=6.9e-09 Score=70.82 Aligned_cols=44 Identities=34% Similarity=0.786 Sum_probs=36.7
Q ss_pred cccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
++..|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 45689999998654 46778 9999 999999876 489999999865
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.46 E-value=6.3e-08 Score=79.90 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=39.6
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC--CCCcc--ccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH--STCPV--CRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~ 134 (227)
....|+||++.|.+| |+... |||.|+..||..|+..+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 456899999999877 33344 99999999999999764 46999 9997754
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=6.3e-08 Score=62.64 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=40.3
Q ss_pred cccccccccccCCceeEEc-CCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 85 TQCAVCLAEYHGEDTLRIL-PYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..|+||++.|.++ +++ + |||+|.+.||.+|+..+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999876 455 5 99999999999999988889999998854
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.43 E-value=3.7e-08 Score=85.12 Aligned_cols=45 Identities=29% Similarity=0.775 Sum_probs=37.8
Q ss_pred CcccccccccccccCCceeEEcCCCCCc-ccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHS-FHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.++..|+||++.+.++ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3457899999998654 6678 9999 999999988 689999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.29 E-value=5.2e-07 Score=63.24 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=39.6
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHc-CCCCCccccccCccCch
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-QHSTCPVCRVSLRELPE 137 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 137 (227)
.|.+|--.+ ....++.| |+|+||.+|+..|.+ ..++||.|+.++..+..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 477776555 45678899 999999999999975 46889999999976554
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.01 E-value=4.9e-06 Score=68.20 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=39.9
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC--CCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH--STCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 134 (227)
....|.||.+....+. ..+.|+|.||..|+..|++.+ ..||.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4678999999987653 333599999999999999765 489999998754
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.64 E-value=0.008 Score=38.94 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=34.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~~ 133 (227)
.....|.||.+. ++ +..-..|...||..|++..|... -.||.|+....
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 455789999754 33 44444699999999998877653 25999976543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.58 E-value=0.0093 Score=41.62 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=26.2
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
++..|.||++.+..+....-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 4578999998754333334476 9999999999984
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.48 E-value=0.0046 Score=42.52 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=36.9
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.-..|-.|+-..+ .++. -.+|.+|..|+...|.....||+|+.+++.
T Consensus 27 G~~nCKsCWf~~k---~LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS---SEEE--CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhccccC---Ceee--ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 4467999996642 3332 146999999999999999999999999865
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.56 E-value=0.032 Score=35.59 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=34.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-----CCCCCcccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-----QHSTCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 131 (227)
.+...|++|...+.+....+.-..|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999988754443444345888999999853211 34569999764
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.80 E-value=0.15 Score=32.23 Aligned_cols=45 Identities=22% Similarity=0.632 Sum_probs=31.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC----CCCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ----HSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (227)
..+..|.+|... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999874 3 34444458889999999875433 235999965
No 78
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=90.09 E-value=0.0094 Score=44.88 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=55.0
Q ss_pred CCCccccccCccCchhhccchhhhhhhhhcCCCCCCCCCcccccccCCccccccccCCCCCCCCCCCcCCCCCCCCC
Q 027163 123 STCPVCRVSLRELPERKRLMQPIFSSAIRSHYGTESFDTHSYNYLSGHGFSSRTVVNRGMDSVPEDHCASDDDITDS 199 (227)
Q Consensus 123 ~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~d~~~~ 199 (227)
..-|+|+..+......++...+.......++.+.+........|....+.+...++++|..+....+.++++|.+++
T Consensus 13 ~~~~~C~~~yG~~~GnQP~G~M~~~~~~~sLpGy~~~gtI~I~Y~ip~GiQg~~HPnPGk~y~G~~R~AYLPdn~eG 89 (159)
T 3pg6_A 13 GLVPRGSTSYGIQKGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEG 89 (159)
T ss_dssp ------------CCCCCCSEEEEEEEESSCCTTCTTSEEEEEEEEECCEECCTTSSSTTCEECCEEEEEEEEESHHH
T ss_pred CcccccCccCcccccCCCCCeEEEEecCCCCCCCCCCCeEEEEEEcCCccccCcCCCCCCccCCCCeEEECCCCHHH
Confidence 34699998887766666655555555567788889999999999999999999999999999999999999997766
No 79
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=89.94 E-value=0.6 Score=27.41 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027163 11 TVIGFAVSIM 20 (227)
Q Consensus 11 ~~i~~~~~~~ 20 (227)
++.+++.+++
T Consensus 12 IA~gVVgGv~ 21 (44)
T 2l2t_A 12 IAAGVIGGLF 21 (44)
T ss_dssp HHHHHHHHHH
T ss_pred EEEeehHHHH
Confidence 3333333333
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.13 E-value=0.28 Score=32.93 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=23.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHH
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
..+..|.||-.- ...+....- -|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-cccceeccc-cccccccHhhcccc
Confidence 467899999732 223222122 38899999999885
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.91 E-value=0.16 Score=39.49 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=35.4
Q ss_pred ccccccccccccCCce---eEEcCCCCCcccHhhHHH------HHc-----CCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDT---LRILPYCGHSFHATCIDI------WLH-----QHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~---~~~l~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~~~ 134 (227)
+..|+||...+.+++. .+....|...||..|+.- -+. ....||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3569999999887652 444446899999999731 111 15689999886543
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.41 E-value=0.24 Score=29.87 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=28.6
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRV 130 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 130 (227)
.|.||...-..+ .+..-..|...||..|+.+=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888753333 344444688999999997544332 24998864
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.74 E-value=0.12 Score=40.00 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=32.6
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 132 (227)
++..|.+|... ++ +.....|...||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999854 33 44444688999999987765532 3599998653
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.41 E-value=0.15 Score=40.39 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=33.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 132 (227)
..+..|.+|... ..+.....|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999854 3355555688999999997765432 3599998643
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.18 E-value=0.19 Score=32.92 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=34.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC----CCCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ----HSTCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 133 (227)
.+...|.||..... +..++.-..|.-.||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44567999987753 3334444468889999999754332 346999987653
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.28 E-value=0.11 Score=33.41 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=31.5
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCcccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 131 (227)
..+..|.||... ++ +..-..|...||..|+.+-+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 467789999864 33 34444588899999998544332 259999653
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=85.89 E-value=0.65 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=25.1
Q ss_pred CcccccccccccccCCceeEEcC-CCCCcccHhhH
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILP-YCGHSFHATCI 115 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci 115 (227)
.....|.+|...+.+....+.-. .|.--||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 45578999999987666555554 58899999997
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.56 E-value=0.78 Score=27.73 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=28.6
Q ss_pred ccccccccccCCceeEEcC-CCCCcccHhhHHH----HHcCCCCCcccc
Q 027163 86 QCAVCLAEYHGEDTLRILP-YCGHSFHATCIDI----WLHQHSTCPVCR 129 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~----wl~~~~~CP~Cr 129 (227)
.|.+|...+.++...+.-. .|.--||..|+.- -......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876554444444 4888999999742 113556799885
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.48 E-value=0.11 Score=32.15 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=30.3
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 130 (227)
..+..|.+|... ++ +..-..|...||..|+.+-+... -.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 33 33444588999999998644332 24888853
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.88 E-value=0.18 Score=31.86 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=31.1
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 132 (227)
..+..|.+|... ++ +..-..|...||..|+..-+... -.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356789999863 33 33333588899999998644332 2599997643
No 91
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=83.49 E-value=2.8 Score=26.66 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.7
Q ss_pred CCCcccH
Q 027163 106 CGHSFHA 112 (227)
Q Consensus 106 C~H~fh~ 112 (227)
|.|.|-+
T Consensus 59 C~hr~qk 65 (70)
T 2klu_A 59 SPHRFQK 65 (70)
T ss_dssp CCCCCCC
T ss_pred CcHHHhh
Confidence 6665543
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.03 E-value=0.35 Score=32.95 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=32.6
Q ss_pred CCcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCcccccc
Q 027163 81 AAEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVS 131 (227)
Q Consensus 81 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 131 (227)
...+..|.+|... ++ +..-..|.-.||..|+.+=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566789999865 33 34444588899999997755432 259999753
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.83 E-value=0.46 Score=32.30 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=33.8
Q ss_pred Ccccccccccccc-cCCceeEEcCCCCCcccHhhHHHHHcC--CCCCccccccC
Q 027163 82 AEDTQCAVCLAEY-HGEDTLRILPYCGHSFHATCIDIWLHQ--HSTCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~ 132 (227)
.++..|.||...- .+...+..-..|.-.||..|+..-+.. .-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4667899998753 233355555568889999999753211 23599997643
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.80 E-value=0.37 Score=34.21 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=30.3
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRV 130 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~ 130 (227)
..|.||...-.+...+..-..|...||..|+++-|... -.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36888886533333444444689999999997655432 35998874
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.09 E-value=0.56 Score=30.50 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=32.7
Q ss_pred Ccccccccccccc-cCCceeEEcCCCCCcccHhhHHHHHcC--CCCCccccc
Q 027163 82 AEDTQCAVCLAEY-HGEDTLRILPYCGHSFHATCIDIWLHQ--HSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~ 130 (227)
.++..|.||...- .+...+..-..|.-.||..|+..-... .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 5678899998753 233455555568899999999743211 235888865
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.71 E-value=0.23 Score=31.13 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=31.2
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 132 (227)
.+..|.+|... ++ +..-..|...||..|+.+-+... -.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 33 33444688999999998544332 2599996543
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.56 E-value=2.7 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.464 Sum_probs=35.2
Q ss_pred ccccccccccccc---CCceeEEcCCCCCcccHhhHHHHH-cCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYH---GEDTLRILPYCGHSFHATCIDIWL-HQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 134 (227)
....|.||-+++. +++..+....|+--.|..|.+-=. ..+..||-|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4578999999863 232222222466678999997543 456789999998854
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.13 E-value=0.88 Score=34.65 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=32.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHH--HH---cCCCCCcccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDI--WL---HQHSTCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~--wl---~~~~~CP~Cr~~ 131 (227)
.+...| +|..........+....|...||..|+.- -- ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456679 99987654443444446889999999842 11 234579999764
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.94 E-value=0.96 Score=29.87 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=31.4
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHH---H--cCCCCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW---L--HQHSTCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w---l--~~~~~CP~Cr~~~ 132 (227)
+...| ||...+......+.-..|..-||..|+.-- . .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 898877533333343458899999998421 1 1345799998754
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.91 E-value=0.45 Score=33.60 Aligned_cols=47 Identities=30% Similarity=0.677 Sum_probs=30.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC----CCCCcccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ----HSTCPVCR 129 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr 129 (227)
.++..|.||.+.-+..+.+.- ..|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 467889999876432222433 359999999999876542 22366553
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.35 E-value=0.16 Score=34.64 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=35.0
Q ss_pred cccccccccccccC-CceeEEcCCCCCcccHhhHHHHHc--------CCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHG-EDTLRILPYCGHSFHATCIDIWLH--------QHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~~ 134 (227)
.+..|.+|...-.. ...+..-..|...||..|+.+-|. ..-.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 45789999976332 234555556899999999976443 12369999775543
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.00 E-value=2.2 Score=31.59 Aligned_cols=45 Identities=27% Similarity=0.540 Sum_probs=32.2
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-----------CCCCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-----------QHSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 130 (227)
..+..|.+|.+. ++ +..-..|-..||..||.+-+. ..-.||.|+.
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456789999875 33 444445889999999996552 1235999975
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.09 E-value=0.22 Score=34.20 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=32.4
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCcccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 131 (227)
.++..|.||...-.. ..+..-..|...||..|+.+=|... -.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455689999876432 3344444688999999997534322 249999653
No 104
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.73 E-value=0.3 Score=35.29 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=31.8
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 132 (227)
....|..|-..|..-..-.....||.+||..|........+.|-.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34689999999864332222236999999999876655567788886543
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.65 E-value=0.74 Score=31.85 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=30.6
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHc---CCCCCcccccc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH---QHSTCPVCRVS 131 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~ 131 (227)
+...| ||-.....+..| .-..|.-.||..|+..=+. ..-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 887766555444 3345899999999864222 13469999743
No 106
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.19 E-value=1.8 Score=41.80 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CcccccccccccccCCceeEEcCCCC-CcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCG-HSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
-+...|+|-++-|.+| +++| -| +.|-..+|..|+..+.+||.=|.++..
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3456799999999887 6777 76 689999999999999999999888864
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=78.13 E-value=1.2 Score=28.14 Aligned_cols=50 Identities=22% Similarity=0.623 Sum_probs=33.5
Q ss_pred Cccccccccccccc-CCceeEEcCCCCCcccHhhHHHHHc-------CCCCCcccccc
Q 027163 82 AEDTQCAVCLAEYH-GEDTLRILPYCGHSFHATCIDIWLH-------QHSTCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 131 (227)
.++..|.||..... ....+..-..|.-.||..|+..-+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46678999997642 2334555556889999999875331 22359988654
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.79 E-value=0.79 Score=29.99 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=30.7
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHH---------HcCCCCCccccccC
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW---------LHQHSTCPVCRVSL 132 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w---------l~~~~~CP~Cr~~~ 132 (227)
...| ||.........|.- ..|..-||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~C-d~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICC-DRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEEC-SSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEe-CCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 89887654444433 358899999998311 12467799997654
No 109
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=77.38 E-value=5.5 Score=23.25 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027163 12 VIGFAVSIMFIVFVCT 27 (227)
Q Consensus 12 ~i~~~~~~~~i~~~~~ 27 (227)
+++.++++++++.+.+
T Consensus 14 Ia~~vVGvll~vi~~l 29 (44)
T 2jwa_A 14 IISAVVGILLVVVLGV 29 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455555444433333
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.09 E-value=4.8 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=28.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ 121 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 121 (227)
.....|.+|.+.+++...|..-..=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4567899999999877655321122599999999887764
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.75 E-value=0.52 Score=36.74 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=29.8
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCcccccc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVS 131 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~ 131 (227)
+..|.+|... ++.+ ....|...||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999865 3333 333588899999997644332 259999865
No 112
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.70 E-value=1.4 Score=27.59 Aligned_cols=43 Identities=21% Similarity=0.506 Sum_probs=30.2
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVC 128 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 128 (227)
..|-.|...|.+. ....-++|++.||.+|=.--...=.+||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998543 234566799999999954322333579988
No 113
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.81 E-value=5.2 Score=23.35 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027163 7 NLVMTVIGFAVSIMFIV 23 (227)
Q Consensus 7 ~l~~~~i~~~~~~~~i~ 23 (227)
.+...+++-+++++++.
T Consensus 11 aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHH
Confidence 35555665444555444
No 114
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=74.28 E-value=1.7 Score=30.45 Aligned_cols=49 Identities=20% Similarity=0.469 Sum_probs=33.0
Q ss_pred ccccccccccccCCceeEEcC-CCCCcccHhhHHHH------H----cCCCCCccccccC
Q 027163 84 DTQCAVCLAEYHGEDTLRILP-YCGHSFHATCIDIW------L----HQHSTCPVCRVSL 132 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~w------l----~~~~~CP~Cr~~~ 132 (227)
...|.||...+.+....+.-. .|..-||..|+.-- + .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999986554444443 58889999997311 1 0235699998754
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.24 E-value=5.1 Score=29.14 Aligned_cols=45 Identities=27% Similarity=0.542 Sum_probs=30.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHH------c-----CCCCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWL------H-----QHSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~ 130 (227)
..+..|.+|.+. -.+..-..|-..||..||.+-+ . ..=.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 455679999875 3344444688999999998642 1 1236999955
No 116
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.19 E-value=1.1 Score=29.44 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=30.9
Q ss_pred CcccccccccccccCCceeEEc-CCCCCcccHhhHHHHH---------cCCCCCccccccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRIL-PYCGHSFHATCIDIWL---------HQHSTCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~~ 132 (227)
.....| ||-.....+..|.-- +.|..-||..|+.--- .....||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345678 798875444333322 0488899999984211 1245799997653
No 117
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=72.90 E-value=0.85 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 027163 11 TVIGFAVSIMFIV 23 (227)
Q Consensus 11 ~~i~~~~~~~~i~ 23 (227)
++.+.+.++++++
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3444444444433
No 118
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=72.45 E-value=4 Score=22.99 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027163 7 NLVMTVIGFAVSIMFIVF 24 (227)
Q Consensus 7 ~l~~~~i~~~~~~~~i~~ 24 (227)
.+.-++++.+++++++..
T Consensus 12 aIAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHH
Confidence 344445555544444433
No 119
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=71.70 E-value=0.91 Score=29.18 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=29.9
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHH---cCCCCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWL---HQHSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 130 (227)
.+...| ||.........| .-..|..-||..|+.--- .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MI-qCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEE-ECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEE-ECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 998876533334 333588999999985321 12356998864
No 120
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.15 E-value=6.3 Score=27.65 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=23.2
Q ss_pred cccccccccccc-----cCCceeEEcCCCCCcccHhhHH
Q 027163 83 EDTQCAVCLAEY-----HGEDTLRILPYCGHSFHATCID 116 (227)
Q Consensus 83 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~fh~~Ci~ 116 (227)
....|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346799998752 1233444444699999999995
No 121
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.48 E-value=0.8 Score=29.68 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=31.0
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHH----HcCCCCCcccccc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW----LHQHSTCPVCRVS 131 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w----l~~~~~CP~Cr~~ 131 (227)
....| ||.....++...+.-..|..-||..|+.-- +.....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44568 798876555434444458889999998532 1234569999764
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.77 E-value=0.84 Score=30.19 Aligned_cols=44 Identities=30% Similarity=0.593 Sum_probs=27.5
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC-----CCCccccc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH-----STCPVCRV 130 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~ 130 (227)
.|.+|...-. +..+..-..|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4667765532 23444444688999999998655431 35888875
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=69.72 E-value=3.1 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=25.3
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
+...|.+|...|..-..-..-..||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999998644322233369999999997654
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.40 E-value=3.1 Score=27.53 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=24.5
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDI 117 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 117 (227)
+...|.+|...|..-..-..--.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45689999999864432222235999999999754
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=67.36 E-value=4 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=25.0
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHH
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDI 117 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 117 (227)
.+...|.+|...|..-..-..--.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345689999999865432222235999999999754
No 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.87 E-value=3.9 Score=29.48 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=24.1
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDI 117 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 117 (227)
+...|.+|...|..-..-..-..||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34589999999864432222235999999999654
No 127
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.33 E-value=4.5 Score=26.08 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=22.4
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHH
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCID 116 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 116 (227)
..|.+|...|..-..-..--.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999999986433222222599999999964
No 128
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.15 E-value=1.4 Score=29.04 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=28.8
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-----CCCCccccc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-----HSTCPVCRV 130 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 130 (227)
..|.||...-.. ..+..-..|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899864323 334444468899999999854432 225888864
No 129
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.11 E-value=1.6 Score=28.22 Aligned_cols=44 Identities=30% Similarity=0.611 Sum_probs=27.4
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-----CCCCccccc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-----HSTCPVCRV 130 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 130 (227)
.|.||...-. +..+..-..|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775422 2344444468899999999854432 225888864
No 130
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.02 E-value=3.4 Score=26.66 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=28.1
Q ss_pred CcccccccccccccCCceeEEcCC--CC-CcccHhhHHHHHcC----CCCCccccccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPY--CG-HSFHATCIDIWLHQ----HSTCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 132 (227)
.+...| ||..... +. ++.-.. |. ..||..|+. |.. .-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667 8987542 33 333223 55 589999996 332 24699997643
No 131
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=64.06 E-value=9.2 Score=20.79 Aligned_cols=19 Identities=16% Similarity=0.481 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027163 6 MNLVMTVIGFAVSIMFIVF 24 (227)
Q Consensus 6 ~~l~~~~i~~~~~~~~i~~ 24 (227)
..+++++++++.++.+|+|
T Consensus 9 ~Gvl~LLviV~LgV~LI~f 27 (35)
T 2lk9_A 9 IGILVLLIIVILGVPLIIF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchheEE
Confidence 3444444444455444444
No 132
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.36 E-value=3.6 Score=28.02 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=28.0
Q ss_pred CcccccccccccccCCceeEEcCC--CC-CcccHhhHHHHHcC----CCCCccccccC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPY--CG-HSFHATCIDIWLHQ----HSTCPVCRVSL 132 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 132 (227)
.+...| ||..... +. ++.-.. |. ..||..|+. |.. .-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345567 9988643 33 222223 44 579999996 322 34699997654
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.17 E-value=4.9 Score=26.68 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=25.3
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHH
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
.+...|.+|...|..-..-..--.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999998644322222259999999997543
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.76 E-value=4.5 Score=29.60 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=30.1
Q ss_pred Cccccccccccccc--CCceeEEcCCCCCcccHhhHHHHHc-CC---CCCccccc
Q 027163 82 AEDTQCAVCLAEYH--GEDTLRILPYCGHSFHATCIDIWLH-QH---STCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~--~~~~~~~l~~C~H~fh~~Ci~~wl~-~~---~~CP~Cr~ 130 (227)
.++..|.+|...|. .+...... .|.|.+|..|-..-.. .+ -.|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~-~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCE-DCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECT-TTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCC-CCCcccccccCCccCCCCCccceechhhHH
Confidence 46789999999983 22333333 5999999988542111 11 13777865
No 135
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=62.61 E-value=23 Score=21.48 Aligned_cols=26 Identities=0% Similarity=0.140 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 027163 10 MTVIGFAVSIMF-IVFVCTRLICARIH 35 (227)
Q Consensus 10 ~~~i~~~~~~~~-i~~~~~~~~~~r~~ 35 (227)
+++++++.++++ ++++++.|.|.-++
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 334444444433 33444455555443
No 136
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.54 E-value=6.7 Score=33.70 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=29.1
Q ss_pred cccccccccccCCceeEEcCCCCCc--ccHhhHHHHHcC--CCCCccccccCc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHS--FHATCIDIWLHQ--HSTCPVCRVSLR 133 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~~~ 133 (227)
..|++=...+..+ ++-.. |.|. |-..-+.....+ .-.||+|...+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4699888877655 56665 9997 444333332222 346999988764
No 137
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=60.44 E-value=3.7 Score=25.44 Aligned_cols=43 Identities=30% Similarity=0.576 Sum_probs=26.8
Q ss_pred cccccccccccccCCceeEEcCC--CC-CcccHhhHHHHHcC----CCCCccccc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPY--CG-HSFHATCIDIWLHQ----HSTCPVCRV 130 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (227)
+..-| ||.... .+. ++.-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 898764 233 333334 55 689999997 332 235999864
No 138
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=60.14 E-value=3.5 Score=25.57 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=26.1
Q ss_pred cccccccccccccCCceeEEcCC--CC-CcccHhhHHHHHcC----CCCCccccc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPY--CG-HSFHATCIDIWLHQ----HSTCPVCRV 130 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (227)
+...| ||.... .+. ++.-.. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 898763 233 333334 44 579999997 332 235998864
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.80 E-value=6 Score=27.85 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=22.4
Q ss_pred ccccccccccc------CCceeEEcCCCCCcccHhhHHHH
Q 027163 85 TQCAVCLAEYH------GEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 85 ~~C~ICl~~~~------~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
..|.+|+..-. .+..+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 12234443459999999998643
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.57 E-value=4.4 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=23.7
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHH
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDI 117 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 117 (227)
+..|.+|...|..-..-.....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4789999999864332222235999999988654
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=59.30 E-value=7.7 Score=27.17 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=29.9
Q ss_pred CcccccccccccccCCceeEEcC--CCCCcccHhhHHHHHcCC----CCCccccccCc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILP--YCGHSFHATCIDIWLHQH----STCPVCRVSLR 133 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~~ 133 (227)
.++..|.+|.+. + .+..-. .|...||..|+. |... -.||.|+..+-
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 456789999842 3 333332 377899999997 4432 24888765554
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.19 E-value=5.8 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=23.0
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCID 116 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 116 (227)
+...|.+|...|..-..-..--.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4468999999985432212222599999998854
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.14 E-value=2.3 Score=34.06 Aligned_cols=44 Identities=30% Similarity=0.611 Sum_probs=25.5
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcC-----CCCCccccc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ-----HSTCPVCRV 130 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 130 (227)
.|.+|...-. +..+.....|...||..|+.+=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5788876422 2333444468899999999854432 125999965
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.06 E-value=4.7 Score=32.07 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=24.5
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHH
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIW 118 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 118 (227)
+..|.+|...|..-..-.....||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998644322233369999999996543
No 145
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.63 E-value=8.1 Score=33.07 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=29.4
Q ss_pred cccccccccccCCceeEEcCCCCCc--ccHhhHHHHHcC--CCCCccccccCc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHS--FHATCIDIWLHQ--HSTCPVCRVSLR 133 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~~~ 133 (227)
..|++=...+..+ ++-.. |.|. |-..-+.....+ .-.||+|...+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4699888877655 55665 9997 444333333222 346999998774
No 146
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=58.57 E-value=1.2 Score=28.44 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEEc-CCCCCcccHhhHHHH---Hc-----CCCCCccccc
Q 027163 83 EDTQCAVCLAEYHGEDTLRIL-PYCGHSFHATCIDIW---LH-----QHSTCPVCRV 130 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~w---l~-----~~~~CP~Cr~ 130 (227)
+...| ||-.....+..|.-- +.|..-||..|+.-- .. .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 44567 797665555444321 137788999997321 01 1356999975
No 147
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.44 E-value=7.3 Score=25.70 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027163 10 MTVIGFAVSIM 20 (227)
Q Consensus 10 ~~~i~~~~~~~ 20 (227)
.++++++.+++
T Consensus 12 ~Iv~gvi~gil 22 (79)
T 2knc_B 12 VVLLSVMGAIL 22 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33334333333
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.33 E-value=1.8 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.541 Sum_probs=28.5
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcC----CCCCcccccc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQ----HSTCPVCRVS 131 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (227)
.|.+|...-.. ..+..-..|...||..|+.+=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 56677765333 234444468899999999754433 2358888653
No 149
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.75 E-value=1.4 Score=24.34 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=10.3
Q ss_pred cccccccccccccCCc
Q 027163 83 EDTQCAVCLAEYHGED 98 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~ 98 (227)
+...|++|+..+...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4467778877765543
No 150
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.66 E-value=16 Score=23.13 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 027163 21 FIVFVCTRLI 30 (227)
Q Consensus 21 ~i~~~~~~~~ 30 (227)
+++|..+.++
T Consensus 20 lll~~glcI~ 29 (70)
T 2klu_A 20 LLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 151
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.26 E-value=30 Score=21.00 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 027163 8 LVMTVIGFAVSIMFI-VFVCTRLICARIH 35 (227)
Q Consensus 8 l~~~~i~~~~~~~~i-~~~~~~~~~~r~~ 35 (227)
+-+++++++.+++++ +++++.|.|.-++
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 344444444444433 3344445454443
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=52.98 E-value=13 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.539 Sum_probs=26.1
Q ss_pred CcccccccccccccCCceeEEcC--CCCCcccHhhHHHHHcC
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILP--YCGHSFHATCIDIWLHQ 121 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~ 121 (227)
..+..|.||-+. ..+..-. .|...||..||+.++..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 345679999864 3454443 48899999999998754
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.94 E-value=3.1 Score=29.08 Aligned_cols=27 Identities=33% Similarity=0.698 Sum_probs=17.5
Q ss_pred CCCCcccHhhHHHHHcCCCCCccccccCccCc
Q 027163 105 YCGHSFHATCIDIWLHQHSTCPVCRVSLRELP 136 (227)
Q Consensus 105 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 136 (227)
+||+.|. .-+.....||.|+..-...|
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 5999981 11233467999998765544
No 154
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=52.35 E-value=3.4 Score=24.77 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=24.8
Q ss_pred cccccccCCceeEEcCCCCCcccHhhHHHHH---cCCCCCccccc
Q 027163 89 VCLAEYHGEDTLRILPYCGHSFHATCIDIWL---HQHSTCPVCRV 130 (227)
Q Consensus 89 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 130 (227)
||.........| .-..|+.-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI-~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEE-ECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEE-EcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 576654432333 333588899999985221 23456998864
No 155
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.35 E-value=28 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027163 8 LVMTVIGFAVSIMFIVFVCTRL 29 (227)
Q Consensus 8 l~~~~i~~~~~~~~i~~~~~~~ 29 (227)
+++.+++.++++.+++++++++
T Consensus 13 Iv~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 156
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=51.03 E-value=31 Score=19.80 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027163 7 NLVMTVIGFAVSIMFI 22 (227)
Q Consensus 7 ~l~~~~i~~~~~~~~i 22 (227)
++..++++++.+++++
T Consensus 8 n~~~Iv~gvi~~ivli 23 (43)
T 2k9j_B 8 DILVVLLSVMGAILLI 23 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHH
Confidence 4444454544444443
No 157
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.81 E-value=5.7 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.946 Sum_probs=10.7
Q ss_pred ccHhhHHHHHcC
Q 027163 110 FHATCIDIWLHQ 121 (227)
Q Consensus 110 fh~~Ci~~wl~~ 121 (227)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.66 E-value=5.8 Score=27.31 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=10.3
Q ss_pred ccHhhHHHHHc
Q 027163 110 FHATCIDIWLH 120 (227)
Q Consensus 110 fh~~Ci~~wl~ 120 (227)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 159
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.47 E-value=2.1 Score=30.29 Aligned_cols=46 Identities=20% Similarity=0.526 Sum_probs=29.4
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcCC----CCCccccccC
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQH----STCPVCRVSL 132 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 132 (227)
.|.||...-..+. +..-..|...||..|+.+=|... -.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5778877543333 44444688999999998544332 2488886543
No 160
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.30 E-value=3.3 Score=35.88 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-------CCCCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-------QHSTCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~ 132 (227)
+...|.+|...|..-..-.....||++||..|...++. ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34689999998853321112225999999999876542 124577775443
No 161
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=49.53 E-value=5.2 Score=25.02 Aligned_cols=44 Identities=30% Similarity=0.556 Sum_probs=26.5
Q ss_pred CcccccccccccccCCceeEEcCC--CC-CcccHhhHHHHHcC----CCCCccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPY--CG-HSFHATCIDIWLHQ----HSTCPVCRV 130 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (227)
.+..-| ||.... .+. .+.-.. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 344567 898853 243 333334 44 789999986 222 346999965
No 162
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=48.30 E-value=5.7 Score=25.72 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=28.8
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHc-----CCCCCcccccc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-----QHSTCPVCRVS 131 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 131 (227)
..| ||...+......+.-..|.--||..|+.---. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344 88877653333334335888999999943211 24569999764
No 163
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.44 E-value=11 Score=23.92 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=24.7
Q ss_pred CcccccccccccccCCceeEEcCCC-CCcccHhhHHHH
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYC-GHSFHATCIDIW 118 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 118 (227)
.+..-|.||.++ ..++.+. | +-+||..|....
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 455679999988 4577776 9 679999997664
No 164
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.10 E-value=17 Score=23.83 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=29.0
Q ss_pred CcccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
.....|+.|-..+.. ..+. .-+..||.+| ..|-.|+..+..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 345689999998874 3332 2678899888 358889887754
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.95 E-value=11 Score=28.09 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=31.5
Q ss_pred ccccccccccccc--CCceeEEcCCCCCcccHhhHHHHHcCCC--CCcccccc
Q 027163 83 EDTQCAVCLAEYH--GEDTLRILPYCGHSFHATCIDIWLHQHS--TCPVCRVS 131 (227)
Q Consensus 83 ~~~~C~ICl~~~~--~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~ 131 (227)
.+..|++|...|. .+...... .|+|.+|..|- .|+.... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 5789999999863 33344444 59999999997 2433222 38888654
No 166
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.77 E-value=18 Score=22.80 Aligned_cols=40 Identities=20% Similarity=0.501 Sum_probs=30.0
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+.|-..+...+.+.. -+..||..| ..|-.|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4689999999886665543 567889887 468899888754
No 167
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.82 E-value=15 Score=31.72 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=31.6
Q ss_pred CcccccccccccccCCceeEEcC--CCCCcccHhhHHHHHcC----------CCCCcccccc
Q 027163 82 AEDTQCAVCLAEYHGEDTLRILP--YCGHSFHATCIDIWLHQ----------HSTCPVCRVS 131 (227)
Q Consensus 82 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr~~ 131 (227)
..+..|.+|-+. ..+.... .|...||..||+.++.. .=.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345678888864 3344443 58899999999998742 2358888643
No 168
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.46 E-value=15 Score=23.19 Aligned_cols=42 Identities=19% Similarity=0.525 Sum_probs=28.9
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+-|-..+...+.+... -+..||..| ..|-.|+..+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 346899999988754444322 567888877 358888887754
No 169
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.29 E-value=2.2 Score=26.62 Aligned_cols=37 Identities=16% Similarity=0.469 Sum_probs=21.9
Q ss_pred ccccccccccccCCceeEEcC--C--CCCcccHhhHHHHHc
Q 027163 84 DTQCAVCLAEYHGEDTLRILP--Y--CGHSFHATCIDIWLH 120 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~--~--C~H~fh~~Ci~~wl~ 120 (227)
-..|+-|...++.......+. . |++.||..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 357888888776554322221 2 566677777666643
No 170
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.69 E-value=21 Score=22.14 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=28.1
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+.|-..+...+.+.. .-+..||..|+ .|-.|...+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 3579999998876433322 25778888773 58888887754
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=41.45 E-value=43 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 027163 6 MNLVMTVIGFAV 17 (227)
Q Consensus 6 ~~l~~~~i~~~~ 17 (227)
+.|.++++.-.+
T Consensus 6 l~malt~i~gl~ 17 (40)
T 2l9u_A 6 LTMALTVIAGLV 17 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 172
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=41.03 E-value=2.4 Score=27.98 Aligned_cols=20 Identities=25% Similarity=0.770 Sum_probs=15.9
Q ss_pred CCCCcccHhhHHHHHcCCCCCc
Q 027163 105 YCGHSFHATCIDIWLHQHSTCP 126 (227)
Q Consensus 105 ~C~H~fh~~Ci~~wl~~~~~CP 126 (227)
.|+|.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999999854 5553
No 173
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.42 E-value=21 Score=22.94 Aligned_cols=40 Identities=28% Similarity=0.611 Sum_probs=29.5
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
....|+-|-..+...+.+.. -+..||..| ..|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 44689999998876665543 467888877 46888988774
No 174
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.00 E-value=20 Score=22.16 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=27.7
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..|+.|-..+...+.+... -+..||..|+ .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 5799999988765433332 4678888774 58888887754
No 175
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.72 E-value=16 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=11.1
Q ss_pred cccccccccCCceeEEcCCCCCcccHhh
Q 027163 87 CAVCLAEYHGEDTLRILPYCGHSFHATC 114 (227)
Q Consensus 87 C~ICl~~~~~~~~~~~l~~C~H~fh~~C 114 (227)
|+.|-..+..++.+.. -+..||..|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred CCCCCCEEECceEEEE---CCccccCCC
Confidence 5555555443333322 244555544
No 176
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.58 E-value=14 Score=19.46 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=19.1
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhH
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCI 115 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci 115 (227)
..|+.|-...-..+.+. .-+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 46888888776555443 25678888873
No 177
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.56 E-value=25 Score=21.74 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=25.6
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
...|+.|-..+...+.+... -+..||..| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 45788888877653322221 467788777 35778877774
No 178
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.20 E-value=2.4 Score=28.35 Aligned_cols=18 Identities=28% Similarity=0.796 Sum_probs=14.3
Q ss_pred EEcCCCCCcccHhhHHHH
Q 027163 101 RILPYCGHSFHATCIDIW 118 (227)
Q Consensus 101 ~~l~~C~H~fh~~Ci~~w 118 (227)
+.-|.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 345569999999998887
No 179
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.46 E-value=7.9 Score=34.57 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=30.6
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHc-----CCCCCccccccC
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLH-----QHSTCPVCRVSL 132 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 132 (227)
+...| ||...+......+....|.--||..|+.---. ....||.|+..-
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 33456 89887653333344445888999999842111 235699998643
No 180
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.30 E-value=22 Score=22.94 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=29.6
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+.|-..+...+.+.. -+..||..| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 44689999998866555542 567899888 458888887754
No 181
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.88 E-value=33 Score=21.23 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=28.0
Q ss_pred ccccccccccccC--CceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHG--EDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+-|-..+.. .+.+.. .-+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 4579999988875 223322 25778898874 68888887753
No 182
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.11 E-value=30 Score=22.04 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=29.3
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+.|-..+...+.+... -+..||..|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 35899999988765544332 5678998874 68888887754
No 183
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=36.71 E-value=37 Score=21.88 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027163 12 VIGFAVS 18 (227)
Q Consensus 12 ~i~~~~~ 18 (227)
++.++++
T Consensus 17 v~vilia 23 (90)
T 1zza_A 17 VIVILIA 23 (90)
T ss_dssp HHHHHHH
T ss_pred ehhHHHH
Confidence 3333333
No 184
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.17 E-value=49 Score=18.88 Aligned_cols=25 Identities=8% Similarity=0.236 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 027163 8 LVMTVIGFAVSIMFIV-FVCTRLICA 32 (227)
Q Consensus 8 l~~~~i~~~~~~~~i~-~~~~~~~~~ 32 (227)
+-+++++++.+++++. .++..|.|.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~G 35 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVG 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444433 333344333
No 185
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.21 E-value=27 Score=21.36 Aligned_cols=42 Identities=19% Similarity=0.555 Sum_probs=30.2
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+.|-..+...+.+... -+..||..|. .|-.|...+..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 346899999998766654332 5677898885 58888887754
No 186
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.13 E-value=17 Score=23.24 Aligned_cols=40 Identities=30% Similarity=0.682 Sum_probs=27.7
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+.|-..+...+.+.. -+..||..|+ .|-.|+..+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 4679999998866665433 5678888773 47788777754
No 187
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.09 E-value=39 Score=22.09 Aligned_cols=41 Identities=22% Similarity=0.479 Sum_probs=29.5
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+.|-..+...+.+. .-+..||..|+ .|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCC
Confidence 3468999999987665543 26778998884 58888777754
No 188
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=31.27 E-value=29 Score=24.50 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=28.7
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
...|+-|-..+.....+.. -+..||..| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999998875533432 577899888 46889988874
No 189
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.42 E-value=43 Score=20.49 Aligned_cols=40 Identities=23% Similarity=0.651 Sum_probs=27.1
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccC
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 135 (227)
...|+.|-..+.. +.+.. -+..||..|+ .|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4578999888763 33332 5677888774 588888877543
No 190
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.29 E-value=37 Score=21.32 Aligned_cols=39 Identities=26% Similarity=0.662 Sum_probs=26.9
Q ss_pred cccccccccccC--CceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 85 TQCAVCLAEYHG--EDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 85 ~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
..|+.|-..+.. ...++. .-+..||..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 579999988874 222222 25678998884 6888888775
No 191
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.30 E-value=15 Score=19.16 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=9.3
Q ss_pred CCCccccccCccC
Q 027163 123 STCPVCRVSLREL 135 (227)
Q Consensus 123 ~~CP~Cr~~~~~~ 135 (227)
..||+|+...+..
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 4699998876543
No 192
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=29.17 E-value=75 Score=17.83 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 027163 6 MNLVMTVIGFAVSIMFIVFVCT 27 (227)
Q Consensus 6 ~~l~~~~i~~~~~~~~i~~~~~ 27 (227)
++++-++.++++..++-+|++-
T Consensus 10 LWlvgtv~G~~vi~~~giFfyG 31 (40)
T 3arc_J 10 LWIVATVAGMGVIVIVGLFFYG 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhhhhhheeeEEEee
Confidence 4566666666555555555443
No 193
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=29.08 E-value=77 Score=17.44 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027163 7 NLVMTVIGFAVSIMFIVFV 25 (227)
Q Consensus 7 ~l~~~~i~~~~~~~~i~~~ 25 (227)
.++.+++++.+..+|++.+
T Consensus 7 ~fiAt~Lfi~iPt~FLlil 25 (36)
T 3arc_M 7 GLIATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.50 E-value=12 Score=23.98 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=12.7
Q ss_pred HHHHcCCCCCccccccCcc
Q 027163 116 DIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 116 ~~wl~~~~~CP~Cr~~~~~ 134 (227)
+.||..--.||.|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 3455556679999987753
No 195
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.38 E-value=1.1e+02 Score=19.59 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027163 27 TRLICA 32 (227)
Q Consensus 27 ~~~~~~ 32 (227)
-++.|.
T Consensus 38 ~KckCk 43 (72)
T 2jo1_A 38 RRCRCK 43 (72)
T ss_dssp HHHHHH
T ss_pred CccccC
Confidence 334443
No 196
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.21 E-value=26 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=24.0
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccC
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSL 132 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 132 (227)
.|+.|-..+...+.+.. .-+..||..|+ .|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC--------ccccCCCCC
Confidence 68888887765443322 24677887773 577777766
No 197
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.47 E-value=12 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=16.8
Q ss_pred CCCCCcccHhhHHHHHcCCCCCccccccCccC
Q 027163 104 PYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135 (227)
Q Consensus 104 ~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 135 (227)
..|+|.|-.. .....||.|..++...
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred CCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 3588888532 2234799998876443
No 198
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.08 E-value=38 Score=20.47 Aligned_cols=39 Identities=15% Similarity=0.386 Sum_probs=27.4
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
...|+.|-..+. ++.+ .. -+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 357999998887 4332 22 577889887 358888887753
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.03 E-value=11 Score=24.01 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=13.9
Q ss_pred HHHHcCCCCCccccccCcc
Q 027163 116 DIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 116 ~~wl~~~~~CP~Cr~~~~~ 134 (227)
+.||..--.||+|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 3566666789999998754
No 200
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.61 E-value=19 Score=24.68 Aligned_cols=43 Identities=23% Similarity=0.610 Sum_probs=26.2
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCccC
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLREL 135 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 135 (227)
+..|+.|..++... =++.+|..|-.. +.....||-|..++..+
T Consensus 32 ~~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHHHH
Confidence 47899999886432 123334444322 33456799999988654
No 201
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.50 E-value=65 Score=19.56 Aligned_cols=38 Identities=24% Similarity=0.669 Sum_probs=26.2
Q ss_pred ccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 84 DTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 84 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
...|+.|-..+.. +.+. .-+..||..|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVT---YREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEEE---SSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceEE---ECccccCCCCC--------ccCCCCCcCC
Confidence 3578999888764 3332 25778888773 5888888774
No 202
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.67 E-value=47 Score=21.61 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=28.5
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+.|-..+. ++.+.. -+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA---LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEEE---CCccccccC--------CccCCCCCCCCC
Confidence 4468999999885 333332 578899887 468889888754
No 203
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.61 E-value=67 Score=19.86 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.7
Q ss_pred cccccccccccccCCceeEEcCCCCCcccH-hhHHHH
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHA-TCIDIW 118 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~-~Ci~~w 118 (227)
-...|+-|-..+..++..+.-...-|.||. .||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 457899999999999877766667799985 488775
No 204
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=40 Score=21.32 Aligned_cols=39 Identities=21% Similarity=0.470 Sum_probs=27.7
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLR 133 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 133 (227)
....|+.|-..+.. ..+. .-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 34689999998875 3332 25788998884 5888887764
No 205
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.97 E-value=61 Score=22.48 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=33.5
Q ss_pred ccccccccccccC-CceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 84 DTQCAVCLAEYHG-EDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 84 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
-..|..|-..+.+ +..... .=+..||..|...-+.....|-.|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~--~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEE--ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEE--ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3578888887753 222222 256788999988776655589999888864
No 206
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.81 E-value=52 Score=20.89 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 83 EDTQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 83 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
....|+-|-..+. +..+. .-+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3467999998887 33332 2567788877 468889888754
No 207
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.13 E-value=20 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=29.8
Q ss_pred ccccccccccCCceeEEcCCCCCcccHhhHH---HHH--cCCCCCccccccCc
Q 027163 86 QCAVCLAEYHGEDTLRILPYCGHSFHATCID---IWL--HQHSTCPVCRVSLR 133 (227)
Q Consensus 86 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~---~wl--~~~~~CP~Cr~~~~ 133 (227)
...||...+..+...+....|.--||..|+. .-. .....||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3448887765333333444588899999983 111 13457999976543
No 208
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=57 Score=20.60 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=27.1
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..|+.|-..+. ++.+.. -+..||..|+ .|-.|+..+..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCCC
Confidence 47999999887 333332 5678888774 58888887754
No 209
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.07 E-value=34 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q 027163 83 EDTQCAVCLAEYH 95 (227)
Q Consensus 83 ~~~~C~ICl~~~~ 95 (227)
+-..|++|...+.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 4467999988754
No 210
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.89 E-value=88 Score=20.53 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=10.6
Q ss_pred CCcccHhhHHHHHcCCCCCccccccC
Q 027163 107 GHSFHATCIDIWLHQHSTCPVCRVSL 132 (227)
Q Consensus 107 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 132 (227)
+..||..|... .....|..|...|
T Consensus 53 g~~yC~~cy~~--~~~~~C~~C~~~I 76 (101)
T 2cup_A 53 NKILCNKCTTR--EDSPKCKGCFKAI 76 (101)
T ss_dssp TEEECHHHHTT--CCCCBCSSSCCBC
T ss_pred CEEEChhHhhh--hcCCccccCCCcc
Confidence 34455444322 1223455555554
No 211
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.81 E-value=5.5 Score=19.67 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=7.2
Q ss_pred cccHhhHHHHH
Q 027163 109 SFHATCIDIWL 119 (227)
Q Consensus 109 ~fh~~Ci~~wl 119 (227)
.||..|-.+||
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 46667766665
No 212
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.53 E-value=39 Score=22.31 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=20.1
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..|+.|..++........ |..|-.. +.....||-|..++..
T Consensus 3 ~~CP~C~~~l~~~~~~~~--------C~~C~~~-~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAH--------CETCAKD-FSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSSEEE--------CTTTCCE-EEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCCceE--------Ccccccc-CCCcccCcchhhHHHH
Confidence 467777776643322222 2222211 2223357777776644
No 213
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=63 Score=20.41 Aligned_cols=40 Identities=28% Similarity=0.553 Sum_probs=26.8
Q ss_pred cccccccccccCCceeEEcCCCCCcccHhhHHHHHcCCCCCccccccCcc
Q 027163 85 TQCAVCLAEYHGEDTLRILPYCGHSFHATCIDIWLHQHSTCPVCRVSLRE 134 (227)
Q Consensus 85 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 134 (227)
..|+.|-..+.....+.. .-+..||..| ..|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 479999998873333322 1467788877 358888887753
Done!