BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027164
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 199 bits (507), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 149/220 (67%), Gaps = 1/220 (0%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783
Query: 61 EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL N E +RKA++ +I+ K +++ ++
Sbjct: 784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 904 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 943
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 149/220 (67%), Gaps = 1/220 (0%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 785
Query: 61 EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL N E ++KA++ +I+ K +++ ++
Sbjct: 786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 143/225 (63%), Gaps = 2/225 (0%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
VVP L + ++ IR+ +P DL+ + ++ A+ E++ RFP+G+ L+PV++M I
Sbjct: 800 FEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNI 859
Query: 61 EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
++P + L+ ++ LE +L ++PL N S+ E + + RK + E++ LK K+ ++
Sbjct: 860 KEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSI 919
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DEL +R RVL++LG +D V+++KGR AC I +GD LL+TEL+FNG FNDL Q
Sbjct: 920 MQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQC 979
Query: 180 AALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEVYKMS 223
AAL SC + +KS E ++ ELA PL+ LQE AR+IA+V K S
Sbjct: 980 AALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKES 1024
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 147/222 (66%), Gaps = 1/222 (0%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
V+P+ L I ++ +RL +P D+R ++++ +++E+ RFP G+P L+PVK+MKIED
Sbjct: 759 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 818
Query: 63 PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
+ + L+ +I+ L KL ++PL S ++ + RK +++ +++QLK K+ +SQ
Sbjct: 819 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 878
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L Q AA
Sbjct: 879 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 938
Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
L SCF ++ E L+ ELA+PL+ ++E A KIA++ K S
Sbjct: 939 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 980
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 123/217 (56%), Gaps = 2/217 (0%)
Query: 4 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 63
VP+ + I+ +S +RL VP D+ D + + + RF +P L+P++DM+I+
Sbjct: 714 VPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTV 773
Query: 64 EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 122
E+ +L+ + + LE +L H + K + ++ F++K + E+ LK++ + Q
Sbjct: 774 EMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHL 833
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
+EL NR RVL++LG++ D + LKG AC + DEL++TE++ G FN LD Q AAL
Sbjct: 834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAAL 893
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
SCF+ DK + L EL L +L E AR +A+V
Sbjct: 894 LSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKV 929
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
+V V L + +S IR+ +P +L +++ V E+ F + +P L+P++ M IE
Sbjct: 716 IVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIES 774
Query: 63 PEVVDLVNQIEELEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQK 120
+ + ++E LE KLF P K S+ + F++K + +I+ + +K+ +++ I +
Sbjct: 775 STLSLSLRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQ 834
Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
R ELK R RVL++LG + V+ +KGR AC I +GDELL+ EL+F G FN + ++A
Sbjct: 835 LR-ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIA 893
Query: 181 ALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEV 219
A SCF+ DKS +NL+ K + E+A++IA V
Sbjct: 894 AALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATV 933
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 12/194 (6%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL-FAHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 1019
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLL-LPEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPN---TLKQG 1134
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 1135 IERVRAVAKRIGEV 1148
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 59 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE-NQIRCFQRKAEVNHEIQQLKSKMRDSQ 117
K+ D E + + L++KL +P+ + + ++ E+ I L S + D
Sbjct: 954 KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013
Query: 118 IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
++ D + R +VL++LG+I+A+ V LKGR AC I++ EL++TEL+ + D
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072
Query: 178 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
+ AL S F+ +K+ + + L K + + A K+ ++
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQI 1114
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 102 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 161
+ +I++L M D + D K R VLK I+ + V LKGR AC I++G EL+
Sbjct: 1070 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 1128
Query: 162 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 217
+TEL+ + + ++ AL S F+ K+ E+ + R LAK Q+++E +K+
Sbjct: 1129 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPR--LAKGKQRIEEIYKKML 1186
Query: 218 EVY 220
V+
Sbjct: 1187 CVF 1189
>sp|Q9ASQ5|CRCK3_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 3
OS=Arabidopsis thaliana GN=CRCK3 PE=2 SV=1
Length = 510
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 112 KMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE-LLVTELMFNGT 170
+ + + R E K+ +L K+GH N +V+L G +D GDE L++TE + NGT
Sbjct: 254 RAKKEHFENLRTEFKSEVDLLSKIGHRN---LVKLLG----YVDKGDERLIITEYVRNGT 306
Query: 171 FND 173
D
Sbjct: 307 LRD 309
>sp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis
thaliana GN=SD16 PE=1 SV=2
Length = 847
Score = 34.7 bits (78), Expect = 0.56, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
DE N R++ KL HIN +V+L G C +D G+++L+ E + N + LD H
Sbjct: 562 DEFMNEVRLIAKLQHIN---LVRLLG---CCVDKGEKMLIYEYLENLS---LDSHLFDQT 612
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESAR 214
S + K + IN +A+ L L + +R
Sbjct: 613 RSSNLNWQKRFDIIN---GIARGLLYLHQDSR 641
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis
thaliana GN=SD17 PE=1 SV=1
Length = 843
Score = 34.7 bits (78), Expect = 0.59, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
DE N R++ KL HIN +V+L G C +D G+++L+ E + N + LD H
Sbjct: 558 DEFMNEVRLIAKLQHIN---LVRLLG---CCVDKGEKMLIYEYLENLS---LDSHLFDQT 608
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESAR 214
S + K + IN +A+ L L + +R
Sbjct: 609 RSSNLNWQKRFDIIN---GIARGLLYLHQDSR 637
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis
thaliana GN=SD18 PE=1 SV=1
Length = 850
Score = 34.3 bits (77), Expect = 0.76, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
DE KN +++ +L HIN +V+L AC +D G+++L+ E + N + LD H
Sbjct: 565 DEFKNEVKLIARLQHIN---LVRL---LACCVDAGEKMLIYEYLENLS---LDSH 610
>sp|A7MHJ1|MDTB_CROS8 Multidrug resistance protein MdtB OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=mdtB PE=3 SV=1
Length = 1040
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 13 TLSKIRLSVPPDLRPLDAR----QSILLAVQELESRFPQGLPKLNPVKDMKIE 61
+L+ RL + +L+PLD R Q+++ +QE SR P L P++D+ I+
Sbjct: 617 SLNSARLQI--NLKPLDDRDDRVQTVIARLQEAASRVPGATLYLQPIQDLTID 667
>sp|Q8RY67|WAKLO_ARATH Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana
GN=WAKL14 PE=2 SV=2
Length = 708
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 112 KMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTF 171
+ RDS+ D++ N ++L + H N +V+L G C I+ GD +LV E M NGT
Sbjct: 379 RHRDSESL---DQVMNEIKLLSSVSHPN---LVRLLG---CCIEQGDPVLVYEYMPNGTL 429
Query: 172 ND 173
++
Sbjct: 430 SE 431
>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1
PE=1 SV=2
Length = 735
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Query: 110 KSKMRDS-QIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFN 168
K+++ DS Q+++F +E+ VL ++ H N VV+L G C ++T LLV E + N
Sbjct: 438 KARLGDSSQVEQFINEV----LVLSQINHRN---VVKLLG---CCLETEVPLLVYEFITN 487
Query: 169 GTFNDLDHHQVAALASCFIPVDKS---SEQINLRMELAKPLQQLQESA 213
GT D H + +D S ++ + +E+A L L SA
Sbjct: 488 GTLFDHLHGSM---------IDSSLTWEHRLKIAIEVAGTLAYLHSSA 526
>sp|Q8P017|Y1615_STRP8 Uncharacterized RNA methyltransferase spyM18_1615 OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=spyM18_1615
PE=3 SV=1
Length = 451
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ +F EL
Sbjct: 208 DQVQIIVVSSKEVRLARFIGEL 229
>sp|Q5XAU1|Y1337_STRP6 Uncharacterized RNA methyltransferase M6_Spy1337 OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=M6_Spy1337 PE=3 SV=1
Length = 451
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ +F EL
Sbjct: 208 DQVQIIVVSSKEVRLARFIGEL 229
>sp|Q8KM02|SLYA_PHOLL Transcriptional regulator SlyA OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=slyA PE=3 SV=1
Length = 143
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 25 LRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFA-HP 83
L+PL+ Q+ + + + SR PQ ++ K + IE P +V ++Q+E E KL H
Sbjct: 24 LKPLELTQTHWVTLYNI-SRLPQEQSQIQLAKAIGIEQPSLVRTLDQLE--EKKLITRHT 80
Query: 84 LNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF-RDELKNRSRVLKKLGHINADG 142
+ +I+ + A V E+ + R+ + R+EL S +++KL
Sbjct: 81 CANDRRAKRIKLTEDSASVIRELDGVIESTRNEILGGISREELAFLSTLVQKLEQ----N 136
Query: 143 VVQLKGR 149
++QL+ R
Sbjct: 137 IIQLQSR 143
>sp|Q99YP3|Y1606_STRP1 Uncharacterized RNA methyltransferase SPy_1606/M5005_Spy1319
OS=Streptococcus pyogenes serotype M1 GN=SPy_1606 PE=3
SV=1
Length = 451
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ F EL
Sbjct: 208 DQVQIIVVSSKEVRLANFIGEL 229
>sp|P0DG17|Y1299_STRPQ Uncharacterized RNA methyltransferase SPs0562 OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=SPs0562 PE=3 SV=1
Length = 451
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ F EL
Sbjct: 208 DQVQIIVVSSKEVRLANFIGEL 229
>sp|P0DG16|Y1299_STRP3 Uncharacterized RNA methyltransferase SpyM3_1299 OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=SpyM3_1299 PE=3 SV=1
Length = 451
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 45 FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQ-RKAEVN 103
F QG +L P+ + ++D D++N+I +L K + P+ + IR RKA+ +
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDK-YKLPIYNERKIAGIRTIMVRKAQAS 207
Query: 104 HEIQQLKSKMRDSQIQKFRDEL 125
++Q + ++ ++ F EL
Sbjct: 208 DQVQIIVVSSKEVRLANFIGEL 229
>sp|Q8IYE1|CCD13_HUMAN Coiled-coil domain-containing protein 13 OS=Homo sapiens GN=CCDC13
PE=2 SV=2
Length = 715
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 19 LSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHK 78
LSV PD R L A++ LL ++ LE +GL KL +D+ L ++EEL+ K
Sbjct: 298 LSVYPDPRKLSAQEKNLLRIRSLEREKQEGLEKLASERDV---------LQRELEELKKK 348
Query: 79 L 79
Sbjct: 349 F 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,442,777
Number of Sequences: 539616
Number of extensions: 3132422
Number of successful extensions: 12959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 12887
Number of HSP's gapped (non-prelim): 176
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)