BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027165
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
           N5-carboxyaminoimidazole Ribonucleotide Synthetase
 pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
           N5-carboxyaminoimidazole Ribonucleotide Synthetase
          Length = 387

 Score = 30.8 bits (68), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 151 RWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210
           +WL +    PQ +Q++  T   ++EK        E+ G P+ATY  +   E++ +   E 
Sbjct: 92  QWLEKHAYLPQGSQLLSKTQNRFTEK-----NAIEKAGLPVATYRLVQNQEQLTEAIAEL 146

Query: 211 PTPTV------PIDGKIETV 224
             P+V        DGK + V
Sbjct: 147 SYPSVLKTTTGGYDGKGQVV 166


>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
           Ribonucleotide Synthetase
 pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
           Ribonucleotide Synthetase
 pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
           N5-Carboxyaminoimidazole Ribonucleotide Synthetase
 pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
           N5-Carboxyaminoimidazole Ribonucleotide Synthetase
 pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
           N5-Carboxyaminoimidazole Ribonucleotide Synthetase
 pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
           N5-Carboxyaminoimidazole Ribonucleotide Synthetase
          Length = 389

 Score = 30.8 bits (68), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 151 RWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210
           +WL +    PQ +Q++  T   ++EK        E+ G P+ATY  +   E++ +   E 
Sbjct: 92  QWLEKHAYLPQGSQLLSKTQNRFTEK-----NAIEKAGLPVATYRLVQNQEQLTEAIAEL 146

Query: 211 PTPTV------PIDGKIETV 224
             P+V        DGK + V
Sbjct: 147 SYPSVLKTTTGGYDGKGQVV 166


>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
           Carboxyaminoimidazole Ribonucleotide Synthetase
 pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
           Carboxyaminoimidazole Ribonucleotide Synthetase
          Length = 380

 Score = 30.4 bits (67), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 151 RWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210
           +WL +    PQ +Q++  T   ++EK        E+ G P+ATY  +   E++ +   E 
Sbjct: 86  QWLEKHAYLPQGSQLLSKTQNRFTEK-----NAIEKAGLPVATYRLVQNQEQLTEAIAEL 140

Query: 211 PTPTV 215
             P+V
Sbjct: 141 SYPSV 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,115,710
Number of Sequences: 62578
Number of extensions: 229016
Number of successful extensions: 988
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 9
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)