Query 027165
Match_columns 227
No_of_seqs 58 out of 60
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05755 REF: Rubber elongatio 100.0 3E-96 6E-101 639.1 16.6 196 15-210 4-215 (216)
2 PF03036 Perilipin: Perilipin 70.5 1.4 3E-05 41.8 0.0 73 34-111 27-106 (391)
3 PF12146 Hydrolase_4: Putative 46.2 21 0.00044 26.4 2.6 25 170-194 25-49 (79)
4 cd02888 RNR_II_dimer Class II 42.6 1.3E+02 0.0027 29.5 8.0 95 114-208 302-399 (464)
5 PF10691 DUF2497: Protein of u 28.8 77 0.0017 24.1 3.3 39 50-109 26-64 (73)
6 COG2766 PrkA Putative Ser prot 25.2 82 0.0018 32.8 3.7 55 135-192 579-633 (649)
7 PF08618 Opi1: Transcription f 23.4 70 0.0015 31.6 2.8 35 39-77 18-52 (427)
8 COG3136 GlpM Uncharacterized m 22.4 52 0.0011 27.2 1.4 21 183-203 19-40 (111)
9 PF03618 Kinase-PPPase: Kinase 22.2 46 0.001 30.5 1.3 20 183-203 156-175 (255)
10 PRK05339 PEP synthetase regula 21.1 51 0.0011 30.5 1.3 20 183-203 162-181 (269)
11 PF09096 Phage-tail_2: Basepla 20.9 21 0.00046 31.2 -1.1 29 71-99 111-147 (168)
No 1
>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].
Probab=100.00 E-value=3e-96 Score=639.11 Aligned_cols=196 Identities=66% Similarity=1.086 Sum_probs=190.4
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhhhhhccccccccccccccChhhhHHhhccccccchh
Q 027165 15 EADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLG 94 (227)
Q Consensus 15 ~~ee~~LKyL~FVq~Aai~a~v~~S~lY~yAKenSGPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~FvDrKVDesv~ 94 (227)
+++|++||||||||+|+||+++|||+||+|||||||||||||+|||||||||+||||+||||+|+|+|+|+|||||++++
T Consensus 4 ~~~e~~LKyL~FVq~Aai~a~~~~s~lY~yAK~~sGPLkpgV~tVE~tVktVv~PVy~Kf~~vP~~vL~fvDrKVD~~~~ 83 (216)
T PF05755_consen 4 EEEEKRLKYLGFVQAAAIQALVCFSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYDKFHDVPFEVLKFVDRKVDESVT 83 (216)
T ss_pred ccchhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHhhHhhhcchHHHHhccCcHHHHHHHhhhHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhhhhhhHHH-----------HHHHHHHHhhhhhhHHHHHHHHHH-----hhhHHHHHHHHHHHHHHhcCCCC
Q 027165 95 ELERHVPSLVKQASSQA-----------RAMAFEVQRVGVVDAATTIMNSMY-----SKYEQVAEQYALSAWRWLNRLPV 158 (227)
Q Consensus 95 ~ld~~vPp~vKq~s~QA-----------r~vvsEv~~~Gv~~aa~~~A~~vy-----~kyEp~ae~~av~aW~kLn~lPl 158 (227)
+||+|+||++||+|+|| |++++|+|++|+++||+++|+++| ++|||+||+|++++|++|||||+
T Consensus 84 ~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k~ly~~yEp~Ae~~av~aW~~Ln~lP~ 163 (216)
T PF05755_consen 84 KLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAKDLYTKYEPVAEQYAVSAWRKLNQLPL 163 (216)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999 459999999999999999999875 55999999999999999999999
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHhhhhcCcceeeeccCcchhHHHHhhcCC
Q 027165 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210 (227)
Q Consensus 159 fpqva~~~vPtAa~~seKYN~~V~~~a~kgy~va~YLPlVP~EkIak~f~~~ 210 (227)
||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus 164 ~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~ 215 (216)
T PF05755_consen 164 FPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE 215 (216)
T ss_pred chhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999876
No 2
>PF03036 Perilipin: Perilipin family; InterPro: IPR004279 The perilipin family includes lipid droplet-associated protein (perilipin) and adipose differentiation-related protein (adipophilin). Perilipin is a modulator of adipocyte lipid metabolism and adipophilinis involved in the development and maintenance of adipose tissue. Other proteins belong to this group include TIP47, a cargo selection device for mannose 6-phosphate receptor trafficking [].; PDB: 1SZI_A.
Probab=70.46 E-value=1.4 Score=41.83 Aligned_cols=73 Identities=27% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCccchhhhhhccc-------cccccccccccChhhhHHhhccccccchhcccccCChhhhh
Q 027165 34 IIVCFSTVYEYAKESSGPLKPGVQAVEATVKT-------VLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQ 106 (227)
Q Consensus 34 a~v~~S~lY~yAKenSGPLkpgV~tVE~tVkt-------VVgPVY~Kf~~vP~elL~FvDrKVDesv~~ld~~vPp~vKq 106 (227)
++-.++++|...|++..=++...++.|..|++ ...|+++||.. -+.++|.-.-..+++|++.+|- +|+
T Consensus 27 ~~~~~~~~Y~~~K~~~~~~~~~~~~aE~~v~~~~~~a~~~a~Pi~~~le~----~i~~~d~~ackgLD~lE~k~P~-l~~ 101 (391)
T PF03036_consen 27 ACDKVSSAYSSTKDSHPLVKSVCETAEKGVKTATAAAVSSAQPILQKLEP----QIAAADEYACKGLDKLEEKLPI-LKQ 101 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcc----HHHHHHHHHHhhHHHHHHhCcc-ccC
Confidence 34678899999999999999999999999844 45799998874 2788999999999999999995 566
Q ss_pred hhHHH
Q 027165 107 ASSQA 111 (227)
Q Consensus 107 ~s~QA 111 (227)
=+.|.
T Consensus 102 p~~~i 106 (391)
T PF03036_consen 102 PPEQI 106 (391)
T ss_dssp -----
T ss_pred ChhhH
Confidence 55443
No 3
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=46.23 E-value=21 Score=26.43 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHhhhhcCcceeee
Q 027165 170 AACWSEKYNQLVRCTEERGYPIATY 194 (227)
Q Consensus 170 Aa~~seKYN~~V~~~a~kgy~va~Y 194 (227)
..--+++|-++...|++.||.|.+|
T Consensus 25 ~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 25 FGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3445779999999999999999975
No 4
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=42.60 E-value=1.3e+02 Score=29.53 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=57.5
Q ss_pred HHHHHHhhhh---hhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCChhhhhhhhcchhhHHHHHHHHHHHhhhhcCcc
Q 027165 114 MAFEVQRVGV---VDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYP 190 (227)
Q Consensus 114 vvsEv~~~Gv---~~aa~~~A~~vy~kyEp~ae~~av~aW~kLn~lPlfpqva~~~vPtAa~~seKYN~~V~~~a~kgy~ 190 (227)
+++-+.+.|+ ++.|..+++.++..----|...|+++=+..-.+|.|..-.-.--+-...+.+...++...+.+.|.|
T Consensus 302 lad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~~~w~~l~~~i~~~G~R 381 (464)
T cd02888 302 LADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVNAKELPDDVLEEIEKYGIR 381 (464)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhcchhcHHHHHHHHHHhCcc
Confidence 5555666665 3344445555543322333444444444455666655433211111112556677888888999999
Q ss_pred eeeeccCcchhHHHHhhc
Q 027165 191 IATYLPLIPTERIAKVFD 208 (227)
Q Consensus 191 va~YLPlVP~EkIak~f~ 208 (227)
=+..+-+-||.-|+.+.+
T Consensus 382 Ns~l~aiAPTgs~S~i~g 399 (464)
T cd02888 382 NAHLTTIAPTGTISLIAG 399 (464)
T ss_pred hhceeeeCCcHHHHHHhC
Confidence 999999999999999986
No 5
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=28.83 E-value=77 Score=24.06 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCCCccchhhhhhccccccccccccccChhhhHHhhccccccchhcccccCChhhhhhhH
Q 027165 50 GPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASS 109 (227)
Q Consensus 50 GPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~FvDrKVDesv~~ld~~vPp~vKq~s~ 109 (227)
.+...|-.|+|+-|+.+.-|... .=||.|+|.+|+....
T Consensus 26 ~~~~~~~~TlE~lvremLRPmLk---------------------eWLD~nLP~lVErlVr 64 (73)
T PF10691_consen 26 QISPSSGRTLEDLVREMLRPMLK---------------------EWLDENLPGLVERLVR 64 (73)
T ss_pred hccccccccHHHHHHHHHHHHHH---------------------HHHHhccHHHHHHHHH
Confidence 44455788999999999988762 3478899999987654
No 6
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=25.21 E-value=82 Score=32.78 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=41.1
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCChhhhhhhhcchhhHHHHHHHHHHHhhhhcCccee
Q 027165 135 YSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIA 192 (227)
Q Consensus 135 y~kyEp~ae~~av~aW~kLn~lPlfpqva~~~vPtAa~~seKYN~~V~~~a~kgy~va 192 (227)
|+-||++=+--.=+.|.-+..+=+|-.....+=|.-- +|+|+.|..|.++||+=.
T Consensus 579 ~~s~e~LReviekklf~dvkdl~pv~s~~~~~D~~e~---kk~ne~V~rlverGYt~~ 633 (649)
T COG2766 579 WTSYEKLREVIEKKLFSDVKDLLPVISFTAKADPDEQ---KKHNDFVARLVERGYTRK 633 (649)
T ss_pred ccccHHHHHHHHHhhhHhHhhhccccCccccCChhHH---HHHHHHHHHHHHcCccHH
Confidence 7889988777777889888776555544443333322 899999999999999743
No 7
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=23.45 E-value=70 Score=31.64 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCCCCccchhhhhhccccccccccccccC
Q 027165 39 STVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDV 77 (227)
Q Consensus 39 S~lY~yAKenSGPLkpgV~tVE~tVktVVgPVY~Kf~~v 77 (227)
.++|+..|-+|==+|-|-+=||+.| + ||.+++..+
T Consensus 18 ~~aY~~sK~~Sp~~kyGAe~vE~~v-~---pv~~~v~~v 52 (427)
T PF08618_consen 18 LSAYESSKNYSPRFKYGAEYVERNV-T---PVANTVGSV 52 (427)
T ss_pred HHHHhcCCCCCccccchHHHHHhcc-h---hhhhhhhhc
Confidence 4789999999988999999999999 3 888888533
No 8
>COG3136 GlpM Uncharacterized membrane protein required for alginate biosynthesis [General function prediction only]
Probab=22.36 E-value=52 Score=27.20 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=17.2
Q ss_pred hhhh-cCcceeeeccCcchhHH
Q 027165 183 CTEE-RGYPIATYLPLIPTERI 203 (227)
Q Consensus 183 ~~a~-kgy~va~YLPlVP~EkI 203 (227)
-++. |||-+++-+||.||=-.
T Consensus 19 ~lSktr~yyiaGliPLfPTFAl 40 (111)
T COG3136 19 LLSKTRNYYIAGLIPLFPTFAL 40 (111)
T ss_pred HHHhcccceecccccccchHHH
Confidence 3455 99999999999999654
No 9
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=22.24 E-value=46 Score=30.53 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=15.9
Q ss_pred hhhhcCcceeeeccCcchhHH
Q 027165 183 CTEERGYPIATYLPLIPTERI 203 (227)
Q Consensus 183 ~~a~kgy~va~YLPlVP~EkI 203 (227)
+||.+||+++. +||||=-.+
T Consensus 156 YLA~~G~KvAN-~PLvpe~~l 175 (255)
T PF03618_consen 156 YLANKGYKVAN-VPLVPEVPL 175 (255)
T ss_pred HHHhcCcceee-cCcCCCCCC
Confidence 57889999997 699986444
No 10
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=21.08 E-value=51 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.0
Q ss_pred hhhhcCcceeeeccCcchhHH
Q 027165 183 CTEERGYPIATYLPLIPTERI 203 (227)
Q Consensus 183 ~~a~kgy~va~YLPlVP~EkI 203 (227)
+||.+||+++. +||||=-.+
T Consensus 162 YLA~~G~KvAN-~PLvpe~~l 181 (269)
T PRK05339 162 YLANKGIKAAN-YPLVPEVPL 181 (269)
T ss_pred HHHccCCceEe-eCCCCCCCC
Confidence 57889999998 599996444
No 11
>PF09096 Phage-tail_2: Baseplate structural protein, domain 2; InterPro: IPR015180 This domain adopts a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. It is found at the C terminus of the Gp27 protein; a structural component of the viral baseplate []. ; PDB: 1WTH_D 2Z6B_D 1K28_D.
Probab=20.91 E-value=21 Score=31.25 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=20.2
Q ss_pred ccccccChhhhHHhhccc--------cccchhccccc
Q 027165 71 YEDLHDVPFELLEFVDRK--------VEESLGELERH 99 (227)
Q Consensus 71 Y~Kf~~vP~elL~FvDrK--------VDesv~~ld~~ 99 (227)
|.-|.-.|-..|.|-|.| |||.++++.+.
T Consensus 111 ~GnF~l~PG~ki~F~D~KnQf~~dfyVDEVIHEiSnn 147 (168)
T PF09096_consen 111 YGNFELTPGMKINFYDPKNQFKTDFYVDEVIHEISNN 147 (168)
T ss_dssp E--TT--TT-EEEEE-SS----SEEEEEEEEEEEESS
T ss_pred EccccccCCcEEEecChhhhhccceehhhhhhhhccC
Confidence 567889999999999998 99999998764
Done!