Query 027165
Match_columns 227
No_of_seqs 58 out of 60
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ggd_C Mitotic checkpoint seri 27.0 13 0.00045 22.5 -0.0 14 42-55 3-16 (26)
2 1gxg_A Colicin E8 immunity pro 23.9 33 0.0011 25.6 1.6 18 143-160 66-83 (85)
3 3b6i_A Flavoprotein WRBA; flav 19.4 29 0.00099 26.6 0.5 24 63-88 71-94 (198)
4 2yum_A ZZZ3 protein, zinc fing 18.5 68 0.0023 22.1 2.3 28 169-196 47-74 (75)
5 3u43_A Colicin-E2 immunity pro 17.2 54 0.0019 25.0 1.6 24 138-161 62-85 (94)
6 2ark_A Flavodoxin; FMN, struct 15.7 44 0.0015 25.9 0.8 25 63-89 55-79 (188)
7 1t5b_A Acyl carrier protein ph 15.1 51 0.0017 25.2 1.0 24 64-89 90-113 (201)
8 1rli_A Trp repressor binding p 14.8 53 0.0018 24.8 1.0 23 64-88 75-97 (184)
9 1fr2_A Colicin E9 immunity pro 14.5 71 0.0024 23.8 1.6 21 140-160 64-84 (86)
10 1t0i_A YLR011WP; FMN binding p 14.2 56 0.0019 25.1 1.0 24 64-89 88-111 (191)
No 1
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=27.03 E-value=13 Score=22.52 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=12.1
Q ss_pred HHHhhhcCCCCCcc
Q 027165 42 YEYAKESSGPLKPG 55 (227)
Q Consensus 42 Y~yAKenSGPLkpg 55 (227)
++..|||--|||.|
T Consensus 3 wel~kenvqplrqg 16 (26)
T 4ggd_C 3 WELSKENVQPLRQG 16 (26)
T ss_pred cccchhccchhhcc
Confidence 46789999999987
No 2
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=23.86 E-value=33 Score=25.64 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCCChh
Q 027165 143 EQYALSAWRWLNRLPVFP 160 (227)
Q Consensus 143 e~~av~aW~kLn~lPlfp 160 (227)
--.-++.||.-|.+|.|-
T Consensus 66 Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 66 VIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHcCCcccC
Confidence 335689999999999984
No 3
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=19.37 E-value=29 Score=26.59 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred ccccccccccccccChhhhHHhhccc
Q 027165 63 VKTVLGPIYEDLHDVPFELLEFVDRK 88 (227)
Q Consensus 63 VktVVgPVY~Kf~~vP~elL~FvDrK 88 (227)
.--+++|+| +.++|..+..|+|+-
T Consensus 71 ~ii~gsP~y--~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 71 AIIFGTPTR--FGNMSGQMRTFLDQT 94 (198)
T ss_dssp EEEEEEEEE--TTEECHHHHHHHTTC
T ss_pred EEEEEeChh--cCCchHHHHHHHHHh
Confidence 345789999 789999999999984
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.53 E-value=68 Score=22.07 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHhhhhcCcceeeecc
Q 027165 169 TAACWSEKYNQLVRCTEERGYPIATYLP 196 (227)
Q Consensus 169 tAa~~seKYN~~V~~~a~kgy~va~YLP 196 (227)
|.--|.++|+.....+..+|.++-++.|
T Consensus 47 t~~qcr~r~~~~l~~~~k~g~~~pg~~~ 74 (75)
T 2yum_A 47 TAKQVASQVQKYFIKLTKAGIPVSGPSS 74 (75)
T ss_dssp CHHHHHHHHHHHHGGGSTTCSCCCCSCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 7889999998888889999999888876
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=17.22 E-value=54 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCChhh
Q 027165 138 YEQVAEQYALSAWRWLNRLPVFPQ 161 (227)
Q Consensus 138 yEp~ae~~av~aW~kLn~lPlfpq 161 (227)
-.|.---..++.||.-|.+|.|-.
T Consensus 62 ~SPEgIv~~IKeWRa~nG~pgFK~ 85 (94)
T 3u43_A 62 DSPEGIVKEIKEWRAANGKSGFKQ 85 (94)
T ss_dssp SSHHHHHHHHHHHHHHTTCCCCBC
T ss_pred CCHHHHHHHHHHHHHHcCCccchh
Confidence 345555577999999999999943
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=15.71 E-value=44 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.8
Q ss_pred ccccccccccccccChhhhHHhhcccc
Q 027165 63 VKTVLGPIYEDLHDVPFELLEFVDRKV 89 (227)
Q Consensus 63 VktVVgPVY~Kf~~vP~elL~FvDrKV 89 (227)
.--+++|+| +.++|..+..|+|+--
T Consensus 55 ~ii~gsP~y--~g~~~~~lk~fld~~~ 79 (188)
T 2ark_A 55 GLAVGSPTN--MGLVSWKMKRFFDDVL 79 (188)
T ss_dssp EEEEEEECB--TTBCCHHHHHHHHHTG
T ss_pred EEEEEeCcc--CCcCCHHHHHHHHHHh
Confidence 445789999 7899999999999843
No 7
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=15.14 E-value=51 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.3
Q ss_pred cccccccccccccChhhhHHhhcccc
Q 027165 64 KTVLGPIYEDLHDVPFELLEFVDRKV 89 (227)
Q Consensus 64 ktVVgPVY~Kf~~vP~elL~FvDrKV 89 (227)
--+++|+| +.++|-.+-.|+||-.
T Consensus 90 iv~~~P~y--~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 90 IVIAAPMY--NFNIPTQLKNYFDLIA 113 (201)
T ss_dssp EEEECCCB--TTBCCHHHHHHHHHHC
T ss_pred EEEEeCcc--cCcCCHHHHHHHHHhe
Confidence 45789999 5699999999999854
No 8
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=14.79 E-value=53 Score=24.77 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred cccccccccccccChhhhHHhhccc
Q 027165 64 KTVLGPIYEDLHDVPFELLEFVDRK 88 (227)
Q Consensus 64 ktVVgPVY~Kf~~vP~elL~FvDrK 88 (227)
--+++|+| +.++|-.+-.|+||-
T Consensus 75 ii~~~P~y--~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 75 LIFATPIY--WFGMSGTLKLFIDRW 97 (184)
T ss_dssp EEEEEECB--TTBCCHHHHHHHHTH
T ss_pred EEEEeCcc--ccCCcHHHHHHHHHh
Confidence 45789999 679999999999993
No 9
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=14.49 E-value=71 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcCCCChh
Q 027165 140 QVAEQYALSAWRWLNRLPVFP 160 (227)
Q Consensus 140 p~ae~~av~aW~kLn~lPlfp 160 (227)
|----.-++.||.-|.+|.|-
T Consensus 64 pE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 64 PSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHHHHHHcCCcccC
Confidence 333345689999999999984
No 10
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=14.16 E-value=56 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.2
Q ss_pred cccccccccccccChhhhHHhhcccc
Q 027165 64 KTVLGPIYEDLHDVPFELLEFVDRKV 89 (227)
Q Consensus 64 ktVVgPVY~Kf~~vP~elL~FvDrKV 89 (227)
--+++|+|. .++|-.+-.|+||=.
T Consensus 88 iI~~sP~y~--~~~p~~lK~~iD~~~ 111 (191)
T 1t0i_A 88 IVFVTPQYN--WGYPAALKNAIDRLY 111 (191)
T ss_dssp EEEEEECBT--TBCCHHHHHHHHTCS
T ss_pred EEEEeceEC--CCCCHHHHHHHHHHH
Confidence 347899995 699999999999854
Done!