Query 027167
Match_columns 227
No_of_seqs 149 out of 1804
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.2E-29 6.8E-34 209.8 18.5 135 1-183 139-279 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.1E-28 2.4E-33 191.9 14.5 143 1-181 94-240 (321)
3 TIGR01645 half-pint poly-U bin 99.9 4.1E-25 8.9E-30 194.5 17.3 145 1-182 139-287 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.1E-24 2.3E-29 184.6 19.0 180 2-181 122-351 (352)
5 KOG0117 Heterogeneous nuclear 99.9 6.4E-24 1.4E-28 175.4 15.9 181 1-189 115-341 (506)
6 TIGR01648 hnRNP-R-Q heterogene 99.9 5.7E-23 1.2E-27 180.7 19.5 127 5-182 176-310 (578)
7 KOG0145 RNA-binding protein EL 99.9 7.2E-24 1.6E-28 164.4 10.4 131 1-179 73-209 (360)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.4E-23 1.2E-27 174.2 16.4 132 1-180 35-172 (352)
9 TIGR01622 SF-CC1 splicing fact 99.9 5.3E-23 1.1E-27 180.0 16.8 142 1-178 121-265 (457)
10 KOG0144 RNA-binding protein CU 99.9 6.8E-24 1.5E-28 174.6 9.4 135 1-183 66-210 (510)
11 KOG0131 Splicing factor 3b, su 99.9 5.8E-23 1.3E-27 151.5 10.3 136 1-183 41-181 (203)
12 PLN03134 glycine-rich RNA-bind 99.9 5.3E-21 1.1E-25 141.5 16.4 86 98-183 31-118 (144)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.4E-21 3.1E-26 175.0 14.9 135 1-182 32-170 (562)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.1E-21 1.1E-25 169.6 18.0 156 6-180 218-376 (509)
15 TIGR01628 PABP-1234 polyadenyl 99.9 1.7E-21 3.7E-26 174.5 12.1 144 6-180 214-365 (562)
16 KOG0127 Nucleolar protein fibr 99.9 6.6E-21 1.4E-25 161.1 13.1 159 1-183 37-200 (678)
17 KOG4205 RNA-binding protein mu 99.8 9.6E-21 2.1E-25 154.7 10.5 143 1-185 38-182 (311)
18 KOG0127 Nucleolar protein fibr 99.8 1E-19 2.3E-24 153.9 15.7 180 1-181 149-380 (678)
19 KOG0145 RNA-binding protein EL 99.8 2.3E-19 5E-24 139.4 15.4 179 1-179 159-358 (360)
20 TIGR01648 hnRNP-R-Q heterogene 99.8 9.6E-20 2.1E-24 160.5 12.8 125 1-180 90-223 (578)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.9E-19 1.1E-23 155.6 16.8 156 10-179 312-480 (481)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.9E-18 6.2E-23 152.1 16.3 158 1-178 327-501 (509)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2.9E-17 6.3E-22 144.4 21.4 77 99-180 273-352 (481)
24 KOG0110 RNA-binding protein (R 99.8 2E-18 4.4E-23 150.1 9.9 133 9-180 558-694 (725)
25 KOG0124 Polypyrimidine tract-b 99.8 3.2E-18 7E-23 138.8 9.9 141 3-180 147-291 (544)
26 KOG0123 Polyadenylate-binding 99.7 2.1E-17 4.6E-22 139.4 12.5 124 2-184 31-158 (369)
27 TIGR01622 SF-CC1 splicing fact 99.7 1.6E-16 3.4E-21 139.2 16.7 174 1-178 218-447 (457)
28 KOG0147 Transcriptional coacti 99.7 5.5E-18 1.2E-22 143.8 7.1 144 1-178 211-357 (549)
29 KOG0149 Predicted RNA-binding 99.6 3.5E-16 7.6E-21 120.3 7.5 78 100-177 11-89 (247)
30 TIGR01659 sex-lethal sex-letha 99.6 1.2E-15 2.6E-20 128.1 11.1 83 97-179 103-187 (346)
31 KOG0109 RNA-binding protein LA 99.6 8.7E-16 1.9E-20 121.3 8.6 116 11-184 36-155 (346)
32 KOG0122 Translation initiation 99.6 6.8E-15 1.5E-19 113.7 11.1 82 98-179 186-269 (270)
33 KOG0105 Alternative splicing f 99.6 7.8E-15 1.7E-19 109.0 10.3 78 99-179 4-83 (241)
34 PF00076 RRM_1: RNA recognitio 99.6 5.9E-15 1.3E-19 95.5 8.1 68 104-172 1-70 (70)
35 KOG0121 Nuclear cap-binding pr 99.6 9.8E-15 2.1E-19 102.2 8.0 81 98-178 33-115 (153)
36 KOG0125 Ataxin 2-binding prote 99.6 2E-14 4.4E-19 115.3 9.7 82 96-179 91-174 (376)
37 KOG0146 RNA-binding protein ET 99.6 3E-14 6.6E-19 111.5 10.1 88 97-184 281-370 (371)
38 KOG0111 Cyclophilin-type pepti 99.6 5.4E-15 1.2E-19 112.6 5.7 88 98-185 7-96 (298)
39 KOG0107 Alternative splicing f 99.5 8.7E-14 1.9E-18 102.6 10.3 78 100-182 9-88 (195)
40 PLN03120 nucleic acid binding 99.5 9.4E-14 2E-18 110.2 11.2 77 101-180 4-81 (260)
41 KOG0123 Polyadenylate-binding 99.5 1.3E-13 2.9E-18 116.5 10.0 128 10-179 115-246 (369)
42 PF14259 RRM_6: RNA recognitio 99.5 2E-13 4.4E-18 88.5 8.2 68 104-172 1-70 (70)
43 TIGR01645 half-pint poly-U bin 99.5 1.7E-13 3.7E-18 121.5 10.3 80 99-178 105-186 (612)
44 KOG4207 Predicted splicing fac 99.5 3.5E-13 7.6E-18 101.9 9.6 79 99-177 11-91 (256)
45 KOG4211 Splicing factor hnRNP- 99.5 6.2E-13 1.4E-17 112.1 12.0 136 3-176 41-179 (510)
46 KOG0113 U1 small nuclear ribon 99.5 6.4E-13 1.4E-17 105.5 10.6 83 98-180 98-182 (335)
47 KOG0105 Alternative splicing f 99.5 8.6E-12 1.9E-16 92.9 15.6 125 10-163 44-170 (241)
48 PLN03121 nucleic acid binding 99.4 7.8E-13 1.7E-17 103.4 10.5 76 99-177 3-79 (243)
49 KOG0148 Apoptosis-promoting RN 99.4 2E-13 4.3E-18 107.1 6.9 80 101-180 62-143 (321)
50 KOG0130 RNA-binding protein RB 99.4 6E-13 1.3E-17 94.1 8.3 84 98-181 69-154 (170)
51 KOG0126 Predicted RNA-binding 99.4 2.9E-14 6.3E-19 105.6 0.9 77 100-176 34-112 (219)
52 KOG0131 Splicing factor 3b, su 99.4 3.5E-13 7.7E-18 100.0 6.5 80 98-177 6-87 (203)
53 PLN03213 repressor of silencin 99.4 8.3E-13 1.8E-17 111.4 9.4 78 98-179 7-88 (759)
54 smart00362 RRM_2 RNA recogniti 99.4 3.4E-12 7.4E-17 82.1 9.1 70 103-174 1-72 (72)
55 KOG4206 Spliceosomal protein s 99.4 1.5E-11 3.2E-16 94.6 12.8 165 5-177 46-220 (221)
56 KOG0147 Transcriptional coacti 99.4 9E-12 1.9E-16 106.4 12.6 170 1-176 310-525 (549)
57 KOG0117 Heterogeneous nuclear 99.3 1.2E-11 2.5E-16 103.3 11.6 79 99-177 81-162 (506)
58 smart00360 RRM RNA recognition 99.3 7E-12 1.5E-16 80.3 8.1 69 106-174 1-71 (71)
59 KOG0116 RasGAP SH3 binding pro 99.3 2.3E-11 5E-16 103.5 13.4 82 101-182 288-370 (419)
60 KOG0114 Predicted RNA-binding 99.3 8.1E-12 1.7E-16 84.4 8.3 79 99-180 16-96 (124)
61 COG0724 RNA-binding proteins ( 99.3 8.3E-12 1.8E-16 101.2 9.9 78 101-178 115-194 (306)
62 KOG0108 mRNA cleavage and poly 99.3 4.6E-12 1E-16 108.3 7.9 83 102-184 19-103 (435)
63 cd00590 RRM RRM (RNA recogniti 99.3 3.1E-11 6.6E-16 78.0 9.5 72 103-175 1-74 (74)
64 KOG0144 RNA-binding protein CU 99.3 7.4E-12 1.6E-16 104.1 7.9 85 98-182 31-120 (510)
65 KOG1190 Polypyrimidine tract-b 99.3 1E-10 2.3E-15 96.7 13.3 149 12-178 336-490 (492)
66 KOG0109 RNA-binding protein LA 99.2 1.3E-11 2.8E-16 98.0 6.0 70 102-179 3-74 (346)
67 KOG4212 RNA-binding protein hn 99.2 2E-10 4.4E-15 95.8 13.1 82 101-183 44-128 (608)
68 KOG0106 Alternative splicing f 99.2 3.1E-11 6.7E-16 93.6 7.2 132 10-177 34-169 (216)
69 KOG1457 RNA binding protein (c 99.2 4.3E-10 9.3E-15 86.3 10.7 150 10-163 76-268 (284)
70 KOG4212 RNA-binding protein hn 99.1 1E-09 2.2E-14 91.8 13.2 171 6-177 81-292 (608)
71 smart00361 RRM_1 RNA recogniti 99.1 2.1E-10 4.5E-15 74.4 7.3 60 115-174 2-70 (70)
72 KOG4205 RNA-binding protein mu 99.1 7.2E-11 1.6E-15 97.0 5.8 85 100-184 5-90 (311)
73 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.8E-15 70.1 7.3 54 118-176 1-56 (56)
74 KOG0110 RNA-binding protein (R 99.1 6.8E-10 1.5E-14 97.6 11.2 74 104-177 518-596 (725)
75 KOG0146 RNA-binding protein ET 99.1 1.4E-10 3E-15 91.2 5.9 83 100-183 18-105 (371)
76 KOG0153 Predicted RNA-binding 99.1 4.9E-10 1.1E-14 91.0 9.1 80 94-179 221-303 (377)
77 KOG0415 Predicted peptidyl pro 99.1 2.2E-10 4.9E-15 93.2 6.1 82 98-179 236-319 (479)
78 KOG0120 Splicing factor U2AF, 99.0 8.2E-10 1.8E-14 95.4 8.7 153 1-177 321-490 (500)
79 KOG0124 Polypyrimidine tract-b 99.0 2.9E-10 6.2E-15 93.0 4.5 76 101-176 113-190 (544)
80 KOG4206 Spliceosomal protein s 99.0 1.3E-09 2.8E-14 84.0 7.7 77 101-180 9-91 (221)
81 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.2E-09 4.7E-14 92.5 9.7 82 99-180 403-486 (940)
82 PLN03134 glycine-rich RNA-bind 99.0 1.7E-09 3.6E-14 80.1 7.2 49 1-49 66-116 (144)
83 KOG4211 Splicing factor hnRNP- 99.0 2.3E-08 5.1E-13 84.8 14.3 71 101-173 281-352 (510)
84 KOG0132 RNA polymerase II C-te 98.9 6.6E-09 1.4E-13 92.3 10.7 78 98-181 418-497 (894)
85 KOG0120 Splicing factor U2AF, 98.9 3.9E-09 8.5E-14 91.2 7.8 149 7-180 219-370 (500)
86 KOG4210 Nuclear localization s 98.9 5.9E-09 1.3E-13 85.4 8.2 142 4-183 123-268 (285)
87 KOG0226 RNA-binding proteins [ 98.8 4.4E-09 9.5E-14 82.3 5.2 83 98-180 187-271 (290)
88 smart00361 RRM_1 RNA recogniti 98.8 8.6E-09 1.9E-13 66.7 4.8 40 2-41 26-69 (70)
89 KOG4207 Predicted splicing fac 98.8 4.7E-09 1E-13 79.8 3.6 45 1-45 45-91 (256)
90 KOG4208 Nucleolar RNA-binding 98.8 5E-08 1.1E-12 74.2 8.5 82 98-179 46-130 (214)
91 KOG1365 RNA-binding protein Fu 98.8 1.2E-08 2.7E-13 84.1 5.3 152 5-177 200-360 (508)
92 KOG0149 Predicted RNA-binding 98.7 8.2E-09 1.8E-13 80.0 2.8 46 1-46 44-90 (247)
93 COG0724 RNA-binding proteins ( 98.7 1.5E-07 3.3E-12 76.0 9.8 112 1-137 147-261 (306)
94 KOG1548 Transcription elongati 98.6 1.3E-06 2.9E-11 71.4 13.1 156 8-177 180-350 (382)
95 KOG0111 Cyclophilin-type pepti 98.6 3.2E-08 6.9E-13 76.0 3.5 49 1-49 42-92 (298)
96 KOG0533 RRM motif-containing p 98.6 2E-07 4.3E-12 74.1 8.0 79 100-179 82-162 (243)
97 KOG0106 Alternative splicing f 98.5 1.4E-07 3E-12 73.4 5.0 71 102-180 2-74 (216)
98 KOG4209 Splicing factor RNPS1, 98.5 4.9E-07 1.1E-11 71.8 8.1 82 98-179 98-180 (231)
99 KOG4208 Nucleolar RNA-binding 98.5 1.3E-07 2.9E-12 72.0 4.1 46 2-47 83-130 (214)
100 KOG1995 Conserved Zn-finger pr 98.5 6.8E-07 1.5E-11 73.4 8.0 84 98-181 63-156 (351)
101 KOG1548 Transcription elongati 98.4 9.4E-07 2E-11 72.2 8.1 78 99-177 132-219 (382)
102 KOG1457 RNA binding protein (c 98.4 4.7E-06 1E-10 64.4 11.2 85 100-184 33-123 (284)
103 KOG1365 RNA-binding protein Fu 98.4 2.2E-06 4.8E-11 71.0 9.6 124 7-164 98-227 (508)
104 KOG1190 Polypyrimidine tract-b 98.4 9.4E-06 2E-10 67.9 13.0 74 101-179 297-373 (492)
105 KOG0113 U1 small nuclear ribon 98.4 7.2E-07 1.6E-11 71.5 6.1 49 1-49 133-183 (335)
106 KOG1456 Heterogeneous nuclear 98.4 1.4E-05 2.9E-10 66.3 12.8 124 11-180 67-200 (494)
107 KOG0126 Predicted RNA-binding 98.3 1.4E-07 3.1E-12 70.4 1.0 48 1-48 67-116 (219)
108 KOG4660 Protein Mei2, essentia 98.3 5.8E-07 1.3E-11 77.6 4.1 70 98-172 72-143 (549)
109 PF13893 RRM_5: RNA recognitio 98.3 1.6E-06 3.5E-11 53.3 5.0 34 11-44 21-56 (56)
110 KOG0151 Predicted splicing reg 98.3 2.4E-06 5.1E-11 75.8 7.6 82 98-179 171-257 (877)
111 PF04059 RRM_2: RNA recognitio 98.3 7.7E-06 1.7E-10 55.9 8.2 77 102-178 2-86 (97)
112 KOG1456 Heterogeneous nuclear 98.3 3.3E-05 7.1E-10 64.0 13.1 140 11-163 325-467 (494)
113 KOG4454 RNA binding protein (R 98.2 7E-07 1.5E-11 68.7 2.7 75 98-174 6-82 (267)
114 KOG0108 mRNA cleavage and poly 98.2 1.6E-06 3.4E-11 74.7 4.5 49 1-49 50-100 (435)
115 PF00076 RRM_1: RNA recognitio 98.2 2.1E-06 4.6E-11 54.9 3.9 35 6-40 34-70 (70)
116 smart00360 RRM RNA recognition 98.2 3.1E-06 6.6E-11 53.6 4.6 40 3-42 30-71 (71)
117 KOG4307 RNA binding protein RB 98.2 7.1E-06 1.5E-10 72.8 7.9 161 3-174 344-509 (944)
118 PF14259 RRM_6: RNA recognitio 98.2 3.1E-06 6.7E-11 54.4 4.3 38 2-40 31-70 (70)
119 KOG0129 Predicted RNA-binding 98.1 4.4E-05 9.6E-10 65.7 12.1 65 98-162 367-432 (520)
120 KOG0107 Alternative splicing f 98.1 2.2E-06 4.7E-11 63.8 3.2 41 8-48 44-86 (195)
121 KOG0125 Ataxin 2-binding prote 98.1 2.8E-06 6.2E-11 69.0 3.6 40 8-47 133-174 (376)
122 KOG0130 RNA-binding protein RB 98.1 4E-06 8.8E-11 59.8 3.7 45 3-47 106-152 (170)
123 KOG0128 RNA-binding protein SA 98.0 5.4E-06 1.2E-10 75.0 4.8 109 5-178 703-814 (881)
124 KOG0121 Nuclear cap-binding pr 97.9 1.7E-05 3.6E-10 56.2 4.7 47 3-49 70-118 (153)
125 PF08777 RRM_3: RNA binding mo 97.9 1.2E-05 2.7E-10 56.1 4.1 56 102-163 2-57 (105)
126 KOG0226 RNA-binding proteins [ 97.9 6E-06 1.3E-10 65.0 2.0 48 1-48 222-271 (290)
127 PF11608 Limkain-b1: Limkain b 97.9 5.9E-05 1.3E-09 49.5 6.3 66 102-177 3-75 (90)
128 PLN03120 nucleic acid binding 97.9 2.3E-05 5E-10 62.8 5.2 38 10-47 42-80 (260)
129 smart00362 RRM_2 RNA recogniti 97.8 3.9E-05 8.4E-10 48.5 4.6 35 8-42 36-72 (72)
130 PLN03213 repressor of silencin 97.8 2.5E-05 5.5E-10 66.9 3.9 41 5-47 44-88 (759)
131 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 44.1 5.4 52 102-160 2-53 (53)
132 KOG0415 Predicted peptidyl pro 97.7 3.5E-05 7.6E-10 63.5 3.0 48 1-48 271-320 (479)
133 KOG4454 RNA binding protein (R 97.6 2.3E-05 4.9E-10 60.5 0.6 92 6-160 45-142 (267)
134 KOG0115 RNA-binding protein p5 97.6 0.00048 1E-08 54.5 8.0 72 102-174 32-109 (275)
135 cd00590 RRM RRM (RNA recogniti 97.5 0.00022 4.7E-09 45.2 5.0 35 9-43 38-74 (74)
136 KOG2193 IGF-II mRNA-binding pr 97.5 8E-06 1.7E-10 68.6 -2.5 118 10-181 36-159 (584)
137 PLN03121 nucleic acid binding 97.5 0.00022 4.9E-09 56.4 5.0 39 8-46 41-80 (243)
138 COG5175 MOT2 Transcriptional r 97.4 0.00051 1.1E-08 56.4 6.6 80 100-179 113-203 (480)
139 KOG4849 mRNA cleavage factor I 97.4 0.00013 2.9E-09 60.0 3.2 70 101-170 80-153 (498)
140 KOG4307 RNA binding protein RB 97.3 0.00076 1.7E-08 60.3 7.4 72 103-175 869-943 (944)
141 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0022 4.8E-08 44.1 7.2 77 100-177 5-90 (100)
142 KOG0114 Predicted RNA-binding 97.1 0.001 2.2E-08 45.6 4.3 43 6-48 52-96 (124)
143 KOG0112 Large RNA-binding prot 97.0 0.00057 1.2E-08 62.7 3.8 75 99-179 453-531 (975)
144 PF08675 RNA_bind: RNA binding 97.0 0.0047 1E-07 40.6 7.0 53 100-161 8-60 (87)
145 KOG1855 Predicted RNA-binding 97.0 0.0032 7E-08 53.4 7.8 65 98-162 228-305 (484)
146 KOG4209 Splicing factor RNPS1, 96.9 0.001 2.2E-08 53.0 3.7 45 1-45 133-178 (231)
147 PF04059 RRM_2: RNA recognitio 96.9 0.0016 3.5E-08 44.5 4.1 45 1-45 35-85 (97)
148 KOG0129 Predicted RNA-binding 96.8 0.01 2.3E-07 51.5 9.0 63 98-161 256-324 (520)
149 KOG0128 RNA-binding protein SA 96.7 4.9E-05 1.1E-09 69.0 -5.7 62 100-161 666-727 (881)
150 PF08952 DUF1866: Domain of un 96.6 0.015 3.4E-07 42.5 7.8 73 98-178 24-106 (146)
151 KOG2314 Translation initiation 96.5 0.017 3.7E-07 50.8 8.7 75 99-174 56-139 (698)
152 KOG4676 Splicing factor, argin 96.4 0.0042 9.1E-08 52.2 4.2 75 102-176 8-86 (479)
153 PF10309 DUF2414: Protein of u 96.3 0.038 8.2E-07 34.4 6.9 54 101-162 5-61 (62)
154 PF15023 DUF4523: Protein of u 96.2 0.031 6.8E-07 40.6 7.0 72 99-177 84-160 (166)
155 KOG1996 mRNA splicing factor [ 95.9 0.03 6.6E-07 45.4 6.5 62 115-176 300-364 (378)
156 KOG2193 IGF-II mRNA-binding pr 95.5 0.01 2.2E-07 50.4 2.6 76 102-183 2-80 (584)
157 KOG2202 U2 snRNP splicing fact 95.4 0.0074 1.6E-07 48.0 1.3 61 116-177 83-146 (260)
158 KOG0153 Predicted RNA-binding 95.3 0.026 5.7E-07 46.8 4.3 39 9-47 262-303 (377)
159 PF11608 Limkain-b1: Limkain b 95.2 0.035 7.6E-07 36.7 3.9 36 10-45 38-75 (90)
160 KOG2416 Acinus (induces apopto 95.2 0.026 5.7E-07 50.0 4.2 77 97-179 440-522 (718)
161 KOG4676 Splicing factor, argin 94.9 0.016 3.4E-07 48.8 2.0 57 101-161 151-207 (479)
162 KOG3152 TBP-binding protein, a 94.9 0.016 3.4E-07 46.2 1.9 71 100-170 73-157 (278)
163 KOG2068 MOT2 transcription fac 94.9 0.012 2.7E-07 48.5 1.3 81 100-180 76-164 (327)
164 PF07292 NID: Nmi/IFP 35 domai 94.5 0.068 1.5E-06 35.8 4.0 70 14-122 1-73 (88)
165 KOG0132 RNA polymerase II C-te 94.2 0.06 1.3E-06 49.3 4.0 41 9-49 455-497 (894)
166 KOG2135 Proteins containing th 93.7 0.049 1.1E-06 47.0 2.5 70 103-178 374-445 (526)
167 KOG2591 c-Mpl binding protein, 93.2 0.23 5.1E-06 43.9 5.8 72 96-174 170-247 (684)
168 KOG4661 Hsp27-ERE-TATA-binding 92.8 0.24 5.2E-06 44.0 5.3 45 2-46 438-484 (940)
169 KOG4285 Mitotic phosphoprotein 92.4 1.3 2.8E-05 36.5 8.6 73 101-180 197-271 (350)
170 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.2 4.4E-06 38.3 3.7 79 100-178 6-97 (176)
171 KOG2314 Translation initiation 92.1 0.17 3.7E-06 44.8 3.6 40 2-42 97-139 (698)
172 PF04847 Calcipressin: Calcipr 91.0 1 2.2E-05 34.6 6.5 61 114-180 8-72 (184)
173 KOG0533 RRM motif-containing p 91.0 0.44 9.5E-06 38.3 4.6 44 7-50 120-165 (243)
174 KOG1995 Conserved Zn-finger pr 90.0 0.22 4.9E-06 41.6 2.2 47 2-48 107-155 (351)
175 KOG2202 U2 snRNP splicing fact 89.6 0.21 4.5E-06 39.9 1.7 42 3-44 102-145 (260)
176 KOG0116 RasGAP SH3 binding pro 89.1 0.89 1.9E-05 39.6 5.3 41 8-48 327-368 (419)
177 PF08952 DUF1866: Domain of un 88.4 0.83 1.8E-05 33.6 4.0 36 12-47 71-107 (146)
178 PRK11634 ATP-dependent RNA hel 88.1 8.4 0.00018 35.7 11.2 67 102-177 487-561 (629)
179 KOG0112 Large RNA-binding prot 88.0 0.11 2.3E-06 48.4 -1.0 62 98-160 369-430 (975)
180 PF07530 PRE_C2HC: Associated 86.9 2.3 5.1E-05 27.0 5.0 62 116-178 2-64 (68)
181 PF03880 DbpA: DbpA RNA bindin 86.1 4.9 0.00011 25.8 6.4 65 103-176 2-74 (74)
182 KOG4660 Protein Mei2, essentia 86.0 0.41 8.8E-06 42.3 1.5 37 4-40 105-143 (549)
183 KOG4574 RNA-binding protein (c 86.0 0.64 1.4E-05 43.3 2.8 77 103-185 300-380 (1007)
184 PF14111 DUF4283: Domain of un 84.9 0.64 1.4E-05 34.2 2.0 84 10-135 54-139 (153)
185 smart00596 PRE_C2HC PRE_C2HC d 84.6 2.9 6.4E-05 26.5 4.5 61 116-177 2-63 (69)
186 KOG2253 U1 snRNP complex, subu 84.5 0.68 1.5E-05 41.9 2.2 68 98-174 37-106 (668)
187 KOG4210 Nuclear localization s 82.9 1 2.2E-05 37.2 2.5 63 99-161 86-148 (285)
188 PF07576 BRAP2: BRCA1-associat 81.3 16 0.00034 25.6 9.8 57 103-161 15-72 (110)
189 PF05172 Nup35_RRM: Nup53/35/4 77.3 4.6 0.0001 27.8 3.9 35 10-44 53-89 (100)
190 KOG0804 Cytoplasmic Zn-finger 73.2 17 0.00037 31.8 7.0 59 101-161 74-133 (493)
191 PF03880 DbpA: DbpA RNA bindin 73.2 4.7 0.0001 25.9 3.0 32 12-44 41-74 (74)
192 PF02714 DUF221: Domain of unk 73.0 6.9 0.00015 32.7 4.8 31 14-44 1-31 (325)
193 KOG4410 5-formyltetrahydrofola 70.2 26 0.00057 28.8 7.1 47 101-153 330-377 (396)
194 PF11767 SET_assoc: Histone ly 69.4 7.6 0.00017 24.5 3.2 27 15-41 37-65 (66)
195 PF15513 DUF4651: Domain of un 67.4 16 0.00035 22.7 4.2 19 116-134 9-27 (62)
196 KOG4483 Uncharacterized conser 66.9 14 0.00031 31.8 5.2 58 100-164 390-448 (528)
197 COG5175 MOT2 Transcriptional r 65.6 7.6 0.00016 32.6 3.3 32 15-46 169-202 (480)
198 KOG0921 Dosage compensation co 62.6 13 0.00027 35.8 4.4 23 5-27 896-918 (1282)
199 KOG4849 mRNA cleavage factor I 61.9 11 0.00023 31.9 3.6 38 4-41 117-156 (498)
200 PF10567 Nab6_mRNP_bdg: RNA-re 61.9 24 0.00051 29.2 5.4 77 101-177 15-106 (309)
201 PF11767 SET_assoc: Histone ly 61.7 38 0.00082 21.3 5.7 52 112-172 11-64 (66)
202 KOG2891 Surface glycoprotein [ 61.5 23 0.00051 29.0 5.3 35 100-134 148-194 (445)
203 KOG0151 Predicted splicing reg 60.6 24 0.00053 32.8 5.7 37 8-44 216-254 (877)
204 KOG4285 Mitotic phosphoprotein 59.8 15 0.00032 30.5 3.9 51 2-52 223-275 (350)
205 PF08777 RRM_3: RNA binding mo 59.3 13 0.00028 25.7 3.2 31 13-43 39-76 (105)
206 PF02714 DUF221: Domain of unk 58.4 11 0.00024 31.5 3.2 34 146-179 1-34 (325)
207 PF07292 NID: Nmi/IFP 35 domai 54.4 25 0.00054 23.6 3.7 29 146-174 1-32 (88)
208 PF03468 XS: XS domain; Inter 52.1 17 0.00038 25.7 2.9 54 103-159 10-73 (116)
209 KOG4365 Uncharacterized conser 49.1 3.5 7.5E-05 35.8 -1.3 75 102-177 4-80 (572)
210 KOG4008 rRNA processing protei 35.1 34 0.00074 27.4 2.3 31 98-128 37-67 (261)
211 KOG4019 Calcineurin-mediated s 34.1 43 0.00093 25.7 2.6 72 103-180 12-91 (193)
212 PF11411 DNA_ligase_IV: DNA li 32.4 37 0.00081 18.6 1.5 16 111-126 19-34 (36)
213 PF08206 OB_RNB: Ribonuclease 32.1 32 0.0007 20.8 1.5 37 8-45 5-44 (58)
214 PRK14548 50S ribosomal protein 32.1 1.5E+02 0.0033 19.6 5.8 55 103-160 22-78 (84)
215 PF09707 Cas_Cas2CT1978: CRISP 31.8 1.1E+02 0.0024 20.4 4.1 49 100-151 24-72 (86)
216 TIGR03636 L23_arch archaeal ri 31.7 1.5E+02 0.0032 19.3 5.7 54 103-159 15-70 (77)
217 PF03439 Spt5-NGN: Early trans 31.4 65 0.0014 21.1 3.0 22 9-30 42-63 (84)
218 PF04847 Calcipressin: Calcipr 30.4 66 0.0014 24.8 3.3 34 13-46 33-70 (184)
219 KOG2416 Acinus (induces apopto 29.3 69 0.0015 29.3 3.5 36 11-46 481-521 (718)
220 TIGR02542 B_forsyth_147 Bacter 27.5 34 0.00074 24.1 1.1 45 109-153 82-129 (145)
221 KOG2318 Uncharacterized conser 27.0 1.1E+02 0.0024 27.9 4.4 80 98-177 171-306 (650)
222 PRK15464 cold shock-like prote 26.4 34 0.00073 21.8 0.9 12 9-20 14-25 (70)
223 PRK14998 cold shock-like prote 25.9 40 0.00087 21.6 1.2 11 9-19 11-21 (73)
224 PRK09937 stationary phase/star 25.2 43 0.00092 21.6 1.2 10 9-18 11-20 (74)
225 PF11752 DUF3309: Protein of u 24.2 41 0.00088 19.8 0.8 12 214-225 22-33 (49)
226 PRK15463 cold shock-like prote 24.2 41 0.00089 21.3 1.0 11 9-19 14-24 (70)
227 PRK12448 dihydroxy-acid dehydr 24.0 1.6E+02 0.0034 27.3 4.9 36 148-183 452-487 (615)
228 KOG2591 c-Mpl binding protein, 23.6 44 0.00095 30.3 1.3 27 15-41 216-246 (684)
229 TIGR00110 ilvD dihydroxy-acid 23.5 1.7E+02 0.0036 26.7 4.9 41 142-183 382-422 (535)
230 PRK09507 cspE cold shock prote 23.4 42 0.00091 21.2 0.9 11 9-19 13-23 (69)
231 TIGR02381 cspD cold shock doma 23.2 49 0.0011 20.7 1.2 12 9-20 11-22 (68)
232 PRK10943 cold shock-like prote 23.1 42 0.0009 21.2 0.8 11 9-19 13-23 (69)
233 PRK11558 putative ssRNA endonu 22.8 1.7E+02 0.0036 20.0 3.7 49 101-152 27-75 (97)
234 KOG2295 C2H2 Zn-finger protein 22.4 17 0.00037 32.7 -1.4 61 101-161 231-294 (648)
235 PRK00911 dihydroxy-acid dehydr 22.1 1.8E+02 0.0039 26.6 4.9 40 143-183 398-437 (552)
236 PRK10354 RNA chaperone/anti-te 21.4 48 0.0011 20.9 0.9 10 9-18 14-23 (70)
237 COG5193 LHP1 La protein, small 21.2 45 0.00097 28.9 0.9 61 101-161 174-244 (438)
238 PRK09890 cold shock protein Cs 20.8 51 0.0011 20.9 0.9 11 9-19 14-24 (70)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.2e-29 Score=209.77 Aligned_cols=135 Identities=20% Similarity=0.328 Sum_probs=117.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.|+++||||||+|.++++|++|| +++..|.+++|+|.++.+...
T Consensus 139 i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~----------------------------- 189 (346)
T TIGR01659 139 IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE----------------------------- 189 (346)
T ss_pred EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc-----------------------------
Confidence 4678999999999999999999999999 689999999999988764321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||+++|+++|+++|++||.|..++|++|..++++++||||+|.++++|++
T Consensus 190 -------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 190 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred -------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 1235689999999999999999999999999999999998899999999999999999999
Q ss_pred HHhcCC--ccCC--eEEEEEecCCCCCCC
Q 027167 159 VSRRSH--EICG--QQVAIDSATPLDDAG 183 (227)
Q Consensus 159 al~~~~--~~~g--~~l~V~~a~~~~~~~ 183 (227)
||+.++ .+.+ +.|+|.++.......
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCcccccc
Confidence 998655 5544 789999988765443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=191.88 Aligned_cols=143 Identities=27% Similarity=0.412 Sum_probs=118.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
||||..|++|||||||.|.+.+||+.|| +++.+|.+|.|+-+|++.|....... . .++.
T Consensus 94 virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~-------~----------ltfd-- 154 (321)
T KOG0148|consen 94 VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGK-------P----------LTFD-- 154 (321)
T ss_pred EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCC-------C----------ccHH--
Confidence 6899999999999999999999999999 89999999999999998765211000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
..-.+....+++|||+|++..+||++|++.|++||.|.+|++.++ +||+||.|+++|.|..
T Consensus 155 -------------eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 155 -------------EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred -------------HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 011122556899999999999999999999999999999999997 6899999999999999
Q ss_pred HHhcC--CccCCeEEEEEecCCCCC
Q 027167 159 VSRRS--HEICGQQVAIDSATPLDD 181 (227)
Q Consensus 159 al~~~--~~~~g~~l~V~~a~~~~~ 181 (227)
||... .++.|+.|+|.|-+....
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCC
Confidence 99754 499999999999876543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=4.1e-25 Score=194.54 Aligned_cols=145 Identities=19% Similarity=0.430 Sum_probs=118.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.|+++||||||+|.+.++|++|| +++..|+||.|+|+++..........
T Consensus 139 I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~------------------------ 194 (612)
T TIGR01645 139 MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPII------------------------ 194 (612)
T ss_pred EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccc------------------------
Confidence 4678999999999999999999999999 68999999999998543221100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
...........+|||+|||+++++++|+++|+.||.|.+++|.+|..+++++|||||+|.+.++|.+
T Consensus 195 -------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 195 -------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred -------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 0000011235799999999999999999999999999999999998899999999999999999999
Q ss_pred HHhcCC--ccCCeEEEEEecCCCCCC
Q 027167 159 VSRRSH--EICGQQVAIDSATPLDDA 182 (227)
Q Consensus 159 al~~~~--~~~g~~l~V~~a~~~~~~ 182 (227)
||..++ ++.|+.|+|.++.+.+..
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 997554 899999999999876543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=1.1e-24 Score=184.64 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=119.4
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCC--cEEEEeecCCCCCCCCCCccc---------CCCCCCC----
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDDFRPVGRM---------SHGGYGA---- 64 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~~~~~~~~~~~~~~~---------~~~~~~~---- 64 (227)
++|..++.++|||||+|.+.++|+.|| +++..+.| ++|.|.++..........-.. .......
T Consensus 122 ~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T TIGR01661 122 LSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILT 201 (352)
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccccc
Confidence 467778999999999999999999999 67887776 678888876554211100000 0000000
Q ss_pred ----cc-------------cchhHh-hhhhc--cC-----CC----CCCCCCCCC-CCC-CCCCCCCCCeEEEcCCCCCC
Q 027167 65 ----YN-------------AYISAA-TRYAA--LG-----AP----TLYDHPGSF-YGR-GESSQRIGKKIFVGRLPQEA 113 (227)
Q Consensus 65 ----~~-------------~~~~~~-~~~~~--~~-----~~----~~~~~~~~~-~~~-~~~~~~~~~~l~V~nLp~~~ 113 (227)
.. ...... ..... .. .. ......... ... .......+.+|||+|||+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 281 (352)
T TIGR01661 202 AAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT 281 (352)
T ss_pred ccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCC
Confidence 00 000000 00000 00 00 000000000 000 00112334579999999999
Q ss_pred CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCCCCC
Q 027167 114 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPLDD 181 (227)
Q Consensus 114 t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~~~~ 181 (227)
++++|+++|++||.|.+++|++|..++.++|||||+|.+.++|.+|+..+ ..|.|+.|+|.|+.+++.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999889999999999999999999999755 499999999999998764
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=6.4e-24 Score=175.39 Aligned_cols=181 Identities=24% Similarity=0.388 Sum_probs=123.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCcee-CCcEEEEeecCCCCCCCC-------------------------
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL-GGSTVVVDRATPKEDDFR------------------------- 52 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~-~gr~i~v~~~~~~~~~~~------------------------- 52 (227)
|++|+.+|.+||||||.|.+.++|+.|| +|+++| .|+.|.|+.+..+....-
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 5789999999999999999999999999 689988 689998877644322100
Q ss_pred ------CCcccCCCCCC--CcccchhHhhhhhccCCCCC--C------CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHH
Q 027167 53 ------PVGRMSHGGYG--AYNAYISAATRYAALGAPTL--Y------DHPGSFYGRGESSQRIGKKIFVGRLPQEATAE 116 (227)
Q Consensus 53 ------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 116 (227)
+......++.. .+....+.+-....+-+... . +=.....+.++.....-+.|||+||+.++|++
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE 274 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEE 274 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHH
Confidence 00000011110 00011111111111111110 0 11111222233356667889999999999999
Q ss_pred HHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCCCCCCCCCCCcc
Q 027167 117 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPLDDAGPSQNFM 189 (227)
Q Consensus 117 ~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~~~~~~~~~~~~ 189 (227)
.|+.+|+.||.|+.|+.++| ||||+|.++++|.+|++++ .+|+|..|.|.+|+|....+-.++.+
T Consensus 275 ~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~ 341 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKERKAM 341 (506)
T ss_pred HHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccchhhh
Confidence 99999999999999998877 9999999999999999855 59999999999999987665444333
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=5.7e-23 Score=180.69 Aligned_cols=127 Identities=24% Similarity=0.369 Sum_probs=105.2
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~--~--~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
..+++++|||||+|.++++|.+|+. . ...+.|+.|.|.++.++......
T Consensus 176 ~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~--------------------------- 228 (578)
T TIGR01648 176 ADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED--------------------------- 228 (578)
T ss_pred cccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc---------------------------
Confidence 4567899999999999999999982 2 34789999999998765432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcc--CCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....++|||+||++++++++|+++|++| |.|+.|.+++ +||||+|.+.++|++
T Consensus 229 ----------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 229 ----------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVK 284 (578)
T ss_pred ----------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHH
Confidence 02235789999999999999999999999 9999998764 499999999999999
Q ss_pred HHhcC--CccCCeEEEEEecCCCCCC
Q 027167 159 VSRRS--HEICGQQVAIDSATPLDDA 182 (227)
Q Consensus 159 al~~~--~~~~g~~l~V~~a~~~~~~ 182 (227)
|++.+ .+|.|+.|+|.+++|+...
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99754 5999999999999886543
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.2e-24 Score=164.37 Aligned_cols=131 Identities=24% Similarity=0.447 Sum_probs=118.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
||||+.||+|-||+||.|.+++||++|+ +|+..+..+.|+|.+++|....
T Consensus 73 LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~---------------------------- 124 (360)
T KOG0145|consen 73 LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS---------------------------- 124 (360)
T ss_pred eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh----------------------------
Confidence 6899999999999999999999999999 7999999999999999887553
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
..+.+|||.+||..+|..+|+++|++||.|..-+|+.|..++.++|.+||.|..+.+|+.
T Consensus 125 --------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 125 --------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred --------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 346789999999999999999999999999988999999999999999999999999999
Q ss_pred HHhcC--C--ccCCeEEEEEecCCC
Q 027167 159 VSRRS--H--EICGQQVAIDSATPL 179 (227)
Q Consensus 159 al~~~--~--~~~g~~l~V~~a~~~ 179 (227)
||..+ + .-+-.+|.|.||...
T Consensus 185 AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 185 AIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHhccCCCCCCCCCCeEEEecCCc
Confidence 99744 3 334568999998654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=5.4e-23 Score=174.22 Aligned_cols=132 Identities=24% Similarity=0.448 Sum_probs=114.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.||+++|||||+|.+.++|++|| +++..|.|+.|.|.++.+...
T Consensus 35 i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~----------------------------- 85 (352)
T TIGR01661 35 LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD----------------------------- 85 (352)
T ss_pred EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-----------------------------
Confidence 4678999999999999999999999999 689999999999998865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||..+++++|+++|++||.|..++++.+..++.+++||||+|.+.++|+.
T Consensus 86 -------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 86 -------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred -------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 1235689999999999999999999999999999999988888899999999999999999
Q ss_pred HHhcCC--ccCC--eEEEEEecCCCC
Q 027167 159 VSRRSH--EICG--QQVAIDSATPLD 180 (227)
Q Consensus 159 al~~~~--~~~g--~~l~V~~a~~~~ 180 (227)
|+..++ .+.| ..|.|.++....
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 997554 5544 678899887554
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=5.3e-23 Score=180.03 Aligned_cols=142 Identities=24% Similarity=0.441 Sum_probs=117.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
|++|+.|++++|||||+|.+.++|++|| +++..|.|++|.|+.+...........
T Consensus 121 i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~------------------------ 176 (457)
T TIGR01622 121 CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAA------------------------ 176 (457)
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcc------------------------
Confidence 4678999999999999999999999999 789999999999987643322110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
. . .....+...+|||+|||..+|+++|+++|++||.|..|.++.+..++++++||||+|.+.++|.+|
T Consensus 177 ~-~-----------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 177 T-H-----------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred c-c-----------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 0 0 000012368999999999999999999999999999999999988889999999999999999999
Q ss_pred HhcC--CccCCeEEEEEecCC
Q 027167 160 SRRS--HEICGQQVAIDSATP 178 (227)
Q Consensus 160 l~~~--~~~~g~~l~V~~a~~ 178 (227)
+..+ ..+.|+.|.|.++..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 9754 489999999999763
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.8e-24 Score=174.57 Aligned_cols=135 Identities=27% Similarity=0.466 Sum_probs=116.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHh---cCceeCC--cEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhh
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMV---DTHELGG--STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 75 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~---~~~~~~g--r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (227)
||||+.|+.++|||||.|.+.++|++|+. |...|.| .+|.|++++...++.
T Consensus 66 l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~------------------------ 121 (510)
T KOG0144|consen 66 LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI------------------------ 121 (510)
T ss_pred eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc------------------------
Confidence 68999999999999999999999999993 5557766 778898887654321
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHH
Q 027167 76 AALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 155 (227)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~ 155 (227)
..+.+|||+-|+..+||.+++++|++||.|++|+|++| ..+.+||||||.|.+.+.
T Consensus 122 -----------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 122 -----------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred -----------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHH
Confidence 23678999999999999999999999999999999999 568899999999999999
Q ss_pred HHHHHhcCC-----ccCCeEEEEEecCCCCCCC
Q 027167 156 ADRVSRRSH-----EICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 156 a~~al~~~~-----~~~g~~l~V~~a~~~~~~~ 183 (227)
|..||+.+| +-+..+|.|+||.+++.+.
T Consensus 178 A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 178 AVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999998665 4455689999999887654
No 11
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=5.8e-23 Score=151.48 Aligned_cols=136 Identities=26% Similarity=0.546 Sum_probs=119.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
+++|+.|..++|||||+|.++|||+.|+ +++.+|.||+|+|..+......
T Consensus 41 iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~n---------------------------- 92 (203)
T KOG0131|consen 41 IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN---------------------------- 92 (203)
T ss_pred cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccccc----------------------------
Confidence 6899999999999999999999999999 7899999999999988622111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE-EEeecCCCCCCcccEEEEEecCHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-i~~~~d~~~~~~~g~afV~f~~~~~a~ 157 (227)
...+.+|||+||.+.+++..|.+.|+.||++.. -++++|..|+.+++|+||.|.+.+.+.
T Consensus 93 -------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 93 -------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred -------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 234689999999999999999999999998876 489999999999999999999999999
Q ss_pred HHHh--cCCccCCeEEEEEecCCCCCCC
Q 027167 158 RVSR--RSHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 158 ~al~--~~~~~~g~~l~V~~a~~~~~~~ 183 (227)
+|+. +.+.++.++++|+++.-+...+
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9996 4458889999999998776655
No 12
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=5.3e-21 Score=141.46 Aligned_cols=86 Identities=29% Similarity=0.515 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|.+||.|.+|.++.|..++++++||||+|.+.++|+.|+.. .+.|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999974 4599999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.+++...
T Consensus 111 a~~~~~~~ 118 (144)
T PLN03134 111 ANDRPSAP 118 (144)
T ss_pred CCcCCCCC
Confidence 98776543
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.87 E-value=1.4e-21 Score=175.04 Aligned_cols=135 Identities=22% Similarity=0.372 Sum_probs=114.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|.+|..|++++|||||+|.+.++|++|| ++...|.|+.|+|.++.......
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~--------------------------- 84 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR--------------------------- 84 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc---------------------------
Confidence 4678999999999999999999999999 57778999999998864321110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||.++++++|+++|+.||.|.+|++..+ .+++++|||||+|.+.++|.+
T Consensus 85 -------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 85 -------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred -------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHH
Confidence 112457999999999999999999999999999999988 577899999999999999999
Q ss_pred HHhcC--CccCCeEEEEEecCCCCCC
Q 027167 159 VSRRS--HEICGQQVAIDSATPLDDA 182 (227)
Q Consensus 159 al~~~--~~~~g~~l~V~~a~~~~~~ 182 (227)
|+.++ ..+.++.|.|....++..+
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHHHhcccEecCceEEEecccccccc
Confidence 99755 4888999999876655443
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=5.1e-21 Score=169.62 Aligned_cols=156 Identities=13% Similarity=0.209 Sum_probs=113.6
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
.++.++|||||+|.+.++|..|| +++..|.|+.|.|..+................ .. . ......
T Consensus 218 ~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~--~~------~------~~~~~~- 282 (509)
T TIGR01642 218 NINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQK--NP------D------DNAKNV- 282 (509)
T ss_pred EECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCC--CC------c------cccccc-
Confidence 44678999999999999999999 78999999999997654332111000000000 00 0 000000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--
Q 027167 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-- 162 (227)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-- 162 (227)
..............+|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|+..
T Consensus 283 ----~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~ 358 (509)
T TIGR01642 283 ----EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN 358 (509)
T ss_pred ----ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 00000111123467999999999999999999999999999999999988999999999999999999999974
Q ss_pred CCccCCeEEEEEecCCCC
Q 027167 163 SHEICGQQVAIDSATPLD 180 (227)
Q Consensus 163 ~~~~~g~~l~V~~a~~~~ 180 (227)
...|.|+.|.|.++....
T Consensus 359 g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 359 GKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCEECCeEEEEEECccCC
Confidence 459999999999986543
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=1.7e-21 Score=174.51 Aligned_cols=144 Identities=25% Similarity=0.448 Sum_probs=114.8
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeC----CcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELG----GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~----gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
.++.++|||||+|.+.++|.+|+ +++..|. |+.+.|.++.++........ .......
T Consensus 214 ~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~-----------------~~~~~~~ 276 (562)
T TIGR01628 214 GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELR-----------------RKFEELQ 276 (562)
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHH-----------------hhHHhhh
Confidence 46899999999999999999999 6888998 99999988766543211100 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
. .........+|||+||++.+|+++|+++|++||.|++|+++.| .++.++|||||+|.+.++|.+|
T Consensus 277 ~-------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A 342 (562)
T TIGR01628 277 Q-------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRA 342 (562)
T ss_pred h-------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHH
Confidence 0 0001234678999999999999999999999999999999999 7889999999999999999999
Q ss_pred HhcC--CccCCeEEEEEecCCCC
Q 027167 160 SRRS--HEICGQQVAIDSATPLD 180 (227)
Q Consensus 160 l~~~--~~~~g~~l~V~~a~~~~ 180 (227)
+..+ ..+.|+.|.|.+|.+++
T Consensus 343 ~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 343 VTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHhcCCeeCCceeEEEeccCcH
Confidence 9755 49999999999998765
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.6e-21 Score=161.11 Aligned_cols=159 Identities=25% Similarity=0.442 Sum_probs=121.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCC-CcccCCCCCCCcccchhHhhhhhc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRP-VGRMSHGGYGAYNAYISAATRYAA 77 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
++.+..++.+||||||.|+-.+|++.|+ .++..+.|+.|.|..+.++...... ..... +
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~------------------~ 98 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENK------------------A 98 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccch------------------h
Confidence 4678889999999999999999999999 4677899999999988776554311 00000 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHH
Q 027167 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~ 157 (227)
...+..+.. ........+..+|.|+||||.+.+.+|+.+|+.||.|..|.|++...+..+ |||||+|.+..+|.
T Consensus 99 veK~~~q~~-----~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~ 172 (678)
T KOG0127|consen 99 VEKPIEQKR-----PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAE 172 (678)
T ss_pred hhcccccCC-----cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHH
Confidence 000000000 000111234789999999999999999999999999999999988665555 99999999999999
Q ss_pred HHHh--cCCccCCeEEEEEecCCCCCCC
Q 027167 158 RVSR--RSHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 158 ~al~--~~~~~~g~~l~V~~a~~~~~~~ 183 (227)
.|++ ++++|.||+|.|.||.++....
T Consensus 173 ~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 173 KALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred HHHHhccCceecCceeEEeeeccccccc
Confidence 9997 5669999999999999987654
No 17
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=9.6e-21 Score=154.73 Aligned_cols=143 Identities=36% Similarity=0.652 Sum_probs=127.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
+.+|+.|+++|||+||+|++++....+| ...|+|+|+.|.++.+.++........
T Consensus 38 vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~------------------------ 93 (311)
T KOG4205|consen 38 VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGR------------------------ 93 (311)
T ss_pred EeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccc------------------------
Confidence 4689999999999999999999999999 568999999999999998876554332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
.....+|||++||.+++++++++.|.+||.|..+.++.|..+.+.++|+||.|.+++.+.++
T Consensus 94 ------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 94 ------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 22478999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCccCCeEEEEEecCCCCCCCCC
Q 027167 160 SR-RSHEICGQQVAIDSATPLDDAGPS 185 (227)
Q Consensus 160 l~-~~~~~~g~~l~V~~a~~~~~~~~~ 185 (227)
+. ..|.|+++.+.|..|.|++...+.
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cccceeeecCceeeEeeccchhhcccc
Confidence 85 678999999999999999876543
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1e-19 Score=153.91 Aligned_cols=180 Identities=19% Similarity=0.331 Sum_probs=119.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCC----------------cc-cCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPV----------------GR-MSHGG 61 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~----------------~~-~~~~~ 61 (227)
||+.+.+ +..|||||.|.+..+|..|| .|++.|+||+|.|.||.++..-.... .. ....+
T Consensus 149 IP~k~dg-klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~ 227 (678)
T KOG0127|consen 149 IPRKKDG-KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDG 227 (678)
T ss_pred cccCCCC-CccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccc
Confidence 4655664 45599999999999999999 68999999999999998875322100 00 00000
Q ss_pred CCC--cccchhHhhh---------h----hccCC-CCCCCCC-CCCCCC-----CC---CCCCCCCeEEEcCCCCCCCHH
Q 027167 62 YGA--YNAYISAATR---------Y----AALGA-PTLYDHP-GSFYGR-----GE---SSQRIGKKIFVGRLPQEATAE 116 (227)
Q Consensus 62 ~~~--~~~~~~~~~~---------~----~~~~~-~~~~~~~-~~~~~~-----~~---~~~~~~~~l~V~nLp~~~t~~ 116 (227)
... .......... . ..... ....+.. +..... .. .......+|||+|||+++|++
T Consensus 228 ~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEE 307 (678)
T KOG0127|consen 228 KDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEE 307 (678)
T ss_pred cccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHH
Confidence 000 0000000000 0 00000 0000000 000000 00 011224799999999999999
Q ss_pred HHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--------CccCCeEEEEEecCCCCC
Q 027167 117 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--------HEICGQQVAIDSATPLDD 181 (227)
Q Consensus 117 ~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--------~~~~g~~l~V~~a~~~~~ 181 (227)
+|.+.|++||+|.++.++.++.|++++|.|||.|.+..+|++||+.- -.|.||.|.|..|.++..
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 99999999999999999999999999999999999999999999743 267899999999987764
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=139.44 Aligned_cols=179 Identities=21% Similarity=0.241 Sum_probs=123.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCC--cEEEEeecCCCCCCCCCC--c---ccC-CCCCCCcc-c--
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDDFRPV--G---RMS-HGGYGAYN-A-- 67 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~~~~~~~~~~~~--~---~~~-~~~~~~~~-~-- 67 (227)
|..|..||.|||.|||.|...++|+.|| +|++.-.| .+|.|+++.......... . ..+ .+..+..+ .
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~ 238 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQ 238 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhh
Confidence 4578999999999999999999999999 78887655 789999986553321100 0 000 00001000 0
Q ss_pred --chhHhh---hhhccCCCCCCCCCCCCCCCCCC-CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCC
Q 027167 68 --YISAAT---RYAALGAPTLYDHPGSFYGRGES-SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG 141 (227)
Q Consensus 68 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~ 141 (227)
...... .....-+|...+......+..-+ ......+|||-||.++++|.-|+++|++||.|..++|++|..|++
T Consensus 239 r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 239 RFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred hhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCccc
Confidence 000000 00000111111222222222211 133478999999999999999999999999999999999999999
Q ss_pred cccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCCC
Q 027167 142 HRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 179 (227)
Q Consensus 142 ~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~~ 179 (227)
.+||+||.+.+.++|..||..+ ..+.++.|.|+|...+
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999744 5899999999997654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.82 E-value=9.6e-20 Score=160.46 Aligned_cols=125 Identities=26% Similarity=0.469 Sum_probs=101.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeC-CcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELG-GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA 77 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~-gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
|++| .+|+|||||||+|.+.++|++|| +++++|. ++.|.|..+.
T Consensus 90 l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------------------------------- 136 (578)
T TIGR01648 90 LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------------------------------- 136 (578)
T ss_pred EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------------------------
Confidence 4678 78999999999999999999999 5777774 7777664432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC-EeEEEe-ecCCCCCCcccEEEEEecCHHH
Q 027167 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYV-PKDPKRTGHRGFGFVTFAEEVV 155 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~i~~-~~d~~~~~~~g~afV~f~~~~~ 155 (227)
..++|||+|||.++++++|.++|++++. ++++.+ ..+...+++++||||+|.++++
T Consensus 137 ----------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 137 ----------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred ----------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 2568999999999999999999999863 333333 3333556789999999999999
Q ss_pred HHHHHhcCC----ccCCeEEEEEecCCCC
Q 027167 156 ADRVSRRSH----EICGQQVAIDSATPLD 180 (227)
Q Consensus 156 a~~al~~~~----~~~g~~l~V~~a~~~~ 180 (227)
|++|+.+++ .+.|+.|.|.|+.++.
T Consensus 195 Aa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 195 AAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHHHHhhccceEecCceEEEEeecccc
Confidence 999987543 6789999999988754
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.82 E-value=4.9e-19 Score=155.64 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=105.8
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccc-hhHhhhhhccCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAY-ISAATRYAALGAPTLYDH 86 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 86 (227)
.+|||||+|.+.++|+.|| ++++.|.|++|.|.++................ ......+ .....|+....
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~r~~~~~------- 383 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDG-LTSYKDYSSSRNHRFKKPG------- 383 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCC-CcccccccCCccccCCCcc-------
Confidence 4799999999999999999 78999999999999875443211100000000 0000000 00000100000
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC--EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC-
Q 027167 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS- 163 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~- 163 (227)
.........++.+|||.|||.++++++|+++|+.||. |+.|++.... ++ .+++|||+|.+.++|..||..+
T Consensus 384 ----~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln 457 (481)
T TIGR01649 384 ----SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALN 457 (481)
T ss_pred ----cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhc
Confidence 0000112356789999999999999999999999997 8888887653 23 5789999999999999999754
Q ss_pred -CccCCeE------EEEEecCCC
Q 027167 164 -HEICGQQ------VAIDSATPL 179 (227)
Q Consensus 164 -~~~~g~~------l~V~~a~~~ 179 (227)
+.|.++. |+|+|++++
T Consensus 458 ~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 458 HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCccCCCCCCccceEEEEeccCC
Confidence 4888874 999999874
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.79 E-value=2.9e-18 Score=152.09 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=111.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.||.++|||||+|.+.++|+.|| +++..|.|+.|.|+++.............. .. .. ..
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~-----~~-~~--------~~ 392 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG-----MA-PV--------TL 392 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc-----cc-cc--------cc
Confidence 4678899999999999999999999999 689999999999999865432211110000 00 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHhccCCEeEEEeecCC---CCCCcccE
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDP---KRTGHRGF 145 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~i~~~~d~---~~~~~~g~ 145 (227)
....... ........++.+|+|.||.... ..++|+++|.+||.|..|.|+++. .++...|+
T Consensus 393 ~~~~~~~------~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 393 LAKALSQ------SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred ccccchh------hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce
Confidence 0000000 0000113356789999996421 236799999999999999998752 33456799
Q ss_pred EEEEecCHHHHHHHHhcCC--ccCCeEEEEEecCC
Q 027167 146 GFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 178 (227)
Q Consensus 146 afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~~ 178 (227)
+||+|.++++|++|+..++ .|.|+.|.|.|...
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999999999998665 99999999998653
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.79 E-value=2.9e-17 Score=144.42 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.++.+|||+|||+ .+|+++|+++|+.||.|.+|+++++ .+++|||+|.+.++|..|+..+ ..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 6999999999999999999999987 4689999999999999999754 489999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
++.+.
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86553
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=2e-18 Score=150.15 Aligned_cols=133 Identities=27% Similarity=0.486 Sum_probs=108.9
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (227)
-|.|||||+|.++++|+.|+ ++++.|+|+.|.|+++..+......
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--------------------------------- 604 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--------------------------------- 604 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---------------------------------
Confidence 46799999999999999999 6799999999999988722111100
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--
Q 027167 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 164 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-- 164 (227)
..........+|+|+|||+.++..+++.+|..||.+.+|+|+.....+.++|||||+|-++.+|.+|+..+.
T Consensus 605 ------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST 678 (725)
T KOG0110|consen 605 ------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGST 678 (725)
T ss_pred ------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccc
Confidence 000012235689999999999999999999999999999999875556679999999999999999987654
Q ss_pred ccCCeEEEEEecCCCC
Q 027167 165 EICGQQVAIDSATPLD 180 (227)
Q Consensus 165 ~~~g~~l~V~~a~~~~ 180 (227)
.|.||.|.+.||....
T Consensus 679 HlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 679 HLYGRRLVLEWAKSDN 694 (725)
T ss_pred ceechhhheehhccch
Confidence 8899999999998654
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=3.2e-18 Score=138.81 Aligned_cols=141 Identities=17% Similarity=0.407 Sum_probs=113.7
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
-|+.|+++||||||+|+-+|.|+-|+ +|+..++||.|+|.++..-...+. -.....
T Consensus 147 WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQp------------------iID~vq---- 204 (544)
T KOG0124|consen 147 WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQP------------------IIDMVQ---- 204 (544)
T ss_pred cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccch------------------HHHHHH----
Confidence 48899999999999999999999999 789999999999975432211000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
.....-++|||..++++++++||+.+|..||+|++|.+-+++.++.++||+|++|.+......|+
T Consensus 205 ---------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 205 ---------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred ---------------HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 00123679999999999999999999999999999999999888889999999999998888888
Q ss_pred hcC--CccCCeEEEEEecCCCC
Q 027167 161 RRS--HEICGQQVAIDSATPLD 180 (227)
Q Consensus 161 ~~~--~~~~g~~l~V~~a~~~~ 180 (227)
..+ ..+.|.-|+|-.+...+
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 644 48889999999876544
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.1e-17 Score=139.44 Aligned_cols=124 Identities=19% Similarity=0.379 Sum_probs=107.6
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
.+|. | |-|||||.|.++.+|++|| +|-..+.|++|+|.|+...
T Consensus 31 c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-------------------------------- 75 (369)
T KOG0123|consen 31 CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-------------------------------- 75 (369)
T ss_pred eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC--------------------------------
Confidence 4566 5 9999999999999999999 5677999999999887532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
...|||.||+++++..+|.++|+.||.|++|++.++. .| ++|| ||+|++++.|.+|
T Consensus 76 ---------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 ---------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred ---------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHH
Confidence 1129999999999999999999999999999999984 44 8999 9999999999999
Q ss_pred HhcCC--ccCCeEEEEEecCCCCCCCC
Q 027167 160 SRRSH--EICGQQVAIDSATPLDDAGP 184 (227)
Q Consensus 160 l~~~~--~~~g~~l~V~~a~~~~~~~~ 184 (227)
+..++ .+.++.|.|....+++.+..
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhcc
Confidence 97554 88899999998888776553
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=1.6e-16 Score=139.24 Aligned_cols=174 Identities=15% Similarity=0.239 Sum_probs=109.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCc------ccCCCCCCCcccchhHh
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVG------RMSHGGYGAYNAYISAA 72 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 72 (227)
|++|+.+|.++|||||+|.+.++|.+|+ +++..|.|++|.|.++........... .....+...........
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQL 297 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHH
Confidence 4578889999999999999999999999 689999999999999763321111000 00000000000000000
Q ss_pred h----------------------------hhhccCCCCC--CCCC------CCCCCCCCCCCCCCCeEEEcCCCCCCC--
Q 027167 73 T----------------------------RYAALGAPTL--YDHP------GSFYGRGESSQRIGKKIFVGRLPQEAT-- 114 (227)
Q Consensus 73 ~----------------------------~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~l~V~nLp~~~t-- 114 (227)
. +........+ +... ...............+|+|.||....+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~ 377 (457)
T TIGR01622 298 MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEE 377 (457)
T ss_pred HHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccc
Confidence 0 0000000000 0000 000000111235678899999955444
Q ss_pred --------HHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecCC
Q 027167 115 --------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 178 (227)
Q Consensus 115 --------~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~~ 178 (227)
.+||++.|++||.|+.|.|... ...|++||.|.++++|++|+..++ .|.|+.|.|.+...
T Consensus 378 ~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 378 EPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred cchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 3689999999999999998643 357899999999999999998665 99999999998654
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=5.5e-18 Score=143.83 Aligned_cols=144 Identities=25% Similarity=0.449 Sum_probs=114.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
||.|+.+++++|.|||+|.|.+....|| +.+..+.|.+|.|+.....+.... ..
T Consensus 211 iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a-------------------------~~ 265 (549)
T KOG0147|consen 211 IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAA-------------------------NA 265 (549)
T ss_pred eeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHH-------------------------hc
Confidence 5889999999999999999999999999 899999999999976543222100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
+++.. .... ..+-.+|||+||++++++++|+..|.+||.|..|.+..|..||.++||+|++|.+.++|.+|
T Consensus 266 s~a~~--------~k~~-~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 266 SPALQ--------GKGF-TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred ccccc--------cccc-ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 00000 0000 01112299999999999999999999999999999999988999999999999999999999
Q ss_pred HhcCC--ccCCeEEEEEecCC
Q 027167 160 SRRSH--EICGQQVAIDSATP 178 (227)
Q Consensus 160 l~~~~--~~~g~~l~V~~a~~ 178 (227)
+++++ +|.|+.|+|..-..
T Consensus 337 ~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHhccceecCceEEEEEeee
Confidence 87555 99999999885443
No 29
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=120.29 Aligned_cols=78 Identities=37% Similarity=0.615 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-ccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-~~~g~~l~V~~a~ 177 (227)
.-.+|||++|+|.++.+.|+++|++||+|++..|+.|+.+++++||+||+|.+.+.|.+|+++.+ .|+||+..|..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999887 8899998888653
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=1.2e-15 Score=128.15 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|..++++++||||+|.++++|++||..+ ..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3556889999999999999999999999999999999999999999999999999999999999755 48899999999
Q ss_pred ecCCC
Q 027167 175 SATPL 179 (227)
Q Consensus 175 ~a~~~ 179 (227)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=8.7e-16 Score=121.32 Aligned_cols=116 Identities=22% Similarity=0.437 Sum_probs=102.4
Q ss_pred ccEEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~--~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
|.||||..++...|+.||. ++.+|+|..|.|+-+..+
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----------------------------------------- 74 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----------------------------------------- 74 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEecccc-----------------------------------------
Confidence 5699999999999999994 566999999999877655
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--Ccc
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEI 166 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~ 166 (227)
...+.+|+|+||.+.++..+|+..|.+||.+.+|+|++| |+||.|+-.++|..|+..+ .++
T Consensus 75 ---------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 75 ---------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred ---------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 234678999999999999999999999999999999887 9999999999999999755 499
Q ss_pred CCeEEEEEecCCCCCCCC
Q 027167 167 CGQQVAIDSATPLDDAGP 184 (227)
Q Consensus 167 ~g~~l~V~~a~~~~~~~~ 184 (227)
.|++++|..+.++-+..+
T Consensus 138 ~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccceeeeeeeccccccCC
Confidence 999999999887765544
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.8e-15 Score=113.69 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
....++|-|.||+.++++++|.++|.+||.|..|.|.+|..||.++|||||+|+++++|++||..++ -++.=.|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3467889999999999999999999999999999999999999999999999999999999997554 56666789999
Q ss_pred cCCC
Q 027167 176 ATPL 179 (227)
Q Consensus 176 a~~~ 179 (227)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7.8e-15 Score=108.95 Aligned_cols=78 Identities=23% Similarity=0.478 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
..+.+|||+|||.++.+.+|+++|.+||.|..|.+...+ ....||||+|+++.+|+.||. +...++|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 357899999999999999999999999999999886542 246799999999999999997 455999999999998
Q ss_pred CCC
Q 027167 177 TPL 179 (227)
Q Consensus 177 ~~~ 179 (227)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 743
No 34
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.9e-15 Score=95.53 Aligned_cols=68 Identities=32% Similarity=0.685 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEE
Q 027167 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 172 (227)
Q Consensus 104 l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~ 172 (227)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|+..+ ..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 67888999999999999999999754 488888875
No 35
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=9.8e-15 Score=102.15 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
...++||||+||++.++|++|.++|+++|.|..|-+-.|+.+..+-|||||+|.+.++|+.|+. +...++.++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3468999999999999999999999999999999998898888889999999999999999997 55599999999998
Q ss_pred cCC
Q 027167 176 ATP 178 (227)
Q Consensus 176 a~~ 178 (227)
..-
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 654
No 36
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=2e-14 Score=115.35 Aligned_cols=82 Identities=34% Similarity=0.597 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEE
Q 027167 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (227)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V 173 (227)
......++|+|+|+|+...+-||+.+|.+||+|.+|.|+.+ +.| +|||+||+|++.+||++|-.++| .+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34556789999999999999999999999999999999886 444 89999999999999999998776 899999999
Q ss_pred EecCCC
Q 027167 174 DSATPL 179 (227)
Q Consensus 174 ~~a~~~ 179 (227)
..|.++
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 988765
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3e-14 Score=111.52 Aligned_cols=88 Identities=26% Similarity=0.413 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
..+..++|||-.||.+..+.+|.++|-+||.|.+.++..|+-|+.+++|+||.|.++..|+.||..++ .|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35568999999999999999999999999999999999999999999999999999999999997555 8888999999
Q ss_pred ecCCCCCCCC
Q 027167 175 SATPLDDAGP 184 (227)
Q Consensus 175 ~a~~~~~~~~ 184 (227)
..+||+..++
T Consensus 361 LKRPkdanRP 370 (371)
T KOG0146|consen 361 LKRPKDANRP 370 (371)
T ss_pred hcCccccCCC
Confidence 9999886543
No 38
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.4e-15 Score=112.61 Aligned_cols=88 Identities=32% Similarity=0.506 Sum_probs=81.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||++|...+|+.-|...|-+||.|++|.++.|..+++.|+|+||+|+..++|.+||.+++ +|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998776 99999999999
Q ss_pred cCCCCCCCCC
Q 027167 176 ATPLDDAGPS 185 (227)
Q Consensus 176 a~~~~~~~~~ 185 (227)
|+|..-...+
T Consensus 87 AkP~kikegs 96 (298)
T KOG0111|consen 87 AKPEKIKEGS 96 (298)
T ss_pred cCCccccCCC
Confidence 9998765543
No 39
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=8.7e-14 Score=102.56 Aligned_cols=78 Identities=31% Similarity=0.612 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~ 177 (227)
..++|||+||+..+++.||..+|..||.|.+|-|-+. +.|||||+|+++.+|+.|+. +...|+|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999998877765 57899999999999999986 4569999999999987
Q ss_pred CCCCC
Q 027167 178 PLDDA 182 (227)
Q Consensus 178 ~~~~~ 182 (227)
-+...
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 66553
No 40
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=9.4e-14 Score=110.20 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecCCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 179 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~~~ 179 (227)
..+|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .++||||+|.++++|+.||. +...|.|+.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998853 46899999999999999985 556999999999998754
Q ss_pred C
Q 027167 180 D 180 (227)
Q Consensus 180 ~ 180 (227)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 41
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-13 Score=116.48 Aligned_cols=128 Identities=25% Similarity=0.438 Sum_probs=107.6
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (227)
|+|| ||+|+++++|++|| +|+..+.+++|.|.....+.....+...
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~------------------------------- 162 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE------------------------------- 162 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-------------------------------
Confidence 9999 99999999999999 6899999999999888776654433220
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--c
Q 027167 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~ 165 (227)
....-..++|.+++.+++++.|..+|+.+|.|.++.++++ ..+++++|+||.|.++++|..|+..++ .
T Consensus 163 ---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 163 ---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred ---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 0233567899999999999999999999999999999998 556699999999999999999998665 6
Q ss_pred cCCeEEEEEecCCC
Q 027167 166 ICGQQVAIDSATPL 179 (227)
Q Consensus 166 ~~g~~l~V~~a~~~ 179 (227)
+.+..+.|..+..+
T Consensus 233 ~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 233 FGDKELYVGRAQKK 246 (369)
T ss_pred CCccceeecccccc
Confidence 66788888776653
No 42
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=2e-13 Score=88.53 Aligned_cols=68 Identities=38% Similarity=0.657 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEE
Q 027167 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 172 (227)
Q Consensus 104 l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~ 172 (227)
|||+|||+++++++|.++|+.+|.|..+++..+.. +..+++|||+|.++++|..|+... ..+.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 888999999999999999999743 488898874
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.7e-13 Score=121.51 Aligned_cols=80 Identities=24% Similarity=0.482 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a 176 (227)
...++|||+|||+++++++|+++|.+||.|.+|+++.|+.+++++|||||+|.+.++|+.|+.. ...+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4567999999999999999999999999999999999999999999999999999999999974 45899999999865
Q ss_pred CC
Q 027167 177 TP 178 (227)
Q Consensus 177 ~~ 178 (227)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=3.5e-13 Score=101.89 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
..-..|-|-||-+.++.++|+.+|.+||.|-+|.|++|+-|..++|||||.|.+..+|+.|+..+ ..|+|+.|.|..|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 33567899999999999999999999999999999999999999999999999999999999755 5999999999876
Q ss_pred C
Q 027167 177 T 177 (227)
Q Consensus 177 ~ 177 (227)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.47 E-value=6.2e-13 Score=112.08 Aligned_cols=136 Identities=22% Similarity=0.319 Sum_probs=101.5
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHHh-cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai~-~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
-.+.+|+..|=|||+|.+.+|+++|++ +...+..|.|.|..+.+.+........
T Consensus 41 ~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~------------------------- 95 (510)
T KOG4211|consen 41 IPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPG------------------------- 95 (510)
T ss_pred EeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCC-------------------------
Confidence 346789999999999999999999995 556777889999877665542211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE-EEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 82 TLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
.+....++..|-+++||+.||++||.+||+..-.+.. |.++.| ..+++.+.|||.|++.+.|+.|+
T Consensus 96 ------------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 96 ------------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ------------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH
Confidence 0000235678999999999999999999998765544 455555 55678999999999999999999
Q ss_pred hcC-CccCCeEEEEEec
Q 027167 161 RRS-HEICGQQVAIDSA 176 (227)
Q Consensus 161 ~~~-~~~~g~~l~V~~a 176 (227)
..- ..+.-+-|.|-.+
T Consensus 163 ~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHhhccceEEeehh
Confidence 744 4555566776644
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.4e-13 Score=105.55 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
..+-+||||+-|+.+++|.+|+..|..||.|..|+|++|..|++++|||||+|++..+..+|.+ ....|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999986 34599999999998
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
..-+.
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 65543
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.6e-12 Score=92.89 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=93.2
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (227)
...||||+|+++.||+.|| .++..++|..|+|+++..-.........-+.++.+..
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGg---------------------- 101 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGG---------------------- 101 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCC----------------------
Confidence 3569999999999999999 6899999999999998765432221111111111100
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC
Q 027167 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~ 163 (227)
...-...++......+|.|.+||++.++.||++...+.|.+....+.+| +.+.|+|...++..-|+.++
T Consensus 102 g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 102 GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhh
Confidence 0000112333566889999999999999999999999999999999887 47899999999999998755
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=7.8e-13 Score=103.42 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+||++.+|+++|++||+.||+|.+|+|++|.. ..++|||+|+++++++.|+. ++..|.++.|.|..+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3468999999999999999999999999999999999843 45799999999999999985 7779999999998654
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2e-13 Score=107.09 Aligned_cols=80 Identities=28% Similarity=0.442 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~ 178 (227)
-..|||+.|...++-++|++.|.+||+|.+++|++|..|++++||+||.|.+.++|+.||. +++.|.+|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 3468999999999999999999999999999999999999999999999999999999997 45599999999999988
Q ss_pred CC
Q 027167 179 LD 180 (227)
Q Consensus 179 ~~ 180 (227)
|+
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 77
No 50
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=6e-13 Score=94.06 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
......|||.+++..+|+++|.+.|..||+|+.|.+-.|+.||..+|||+|+|++..+|++|+..+ .+|.|+.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999755 499999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.-+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876654
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.9e-14 Score=105.64 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a 176 (227)
.+.-|||+|||+.+||.||..+|++||+|++|-+++|..||+++||||+.|++.....-|+.+++ .|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46789999999999999999999999999999999999999999999999999888777777665 889999999843
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=3.5e-13 Score=99.95 Aligned_cols=80 Identities=25% Similarity=0.516 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
...+.||||+||+..++++.|+++|-+.|+|.++++++|+.++..+||||++|.++++|+-|++ ++-.+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999986 55599999999999
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 88
No 53
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=8.3e-13 Score=111.45 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCH--HHHHHHHhcC--CccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE--VVADRVSRRS--HEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~--~~a~~al~~~--~~~~g~~l~V 173 (227)
.....+|||+||++.+++++|..+|+.||.|..|.|++ .+| ||||||+|.+. .++.+||..+ .++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34578999999999999999999999999999999994 566 89999999977 6789999754 4999999999
Q ss_pred EecCCC
Q 027167 174 DSATPL 179 (227)
Q Consensus 174 ~~a~~~ 179 (227)
..|+|.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998764
No 54
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=3.4e-12 Score=82.14 Aligned_cols=70 Identities=37% Similarity=0.713 Sum_probs=62.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
+|||.|||..+++++|+++|.+||.+..+.+..+. +.++++|||+|.+.++|+.|+..+ ..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 667899999999999999998744 47888888763
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.37 E-value=1.5e-11 Score=94.63 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=106.6
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcc--cCCCCC--CCcccchh-Hhhhhhc
Q 027167 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGR--MSHGGY--GAYNAYIS-AATRYAA 77 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~~ 77 (227)
..|.+.||.|||.|.+.+.|..|+ +++..+.|++++|+||..+......... ...... ........ .......
T Consensus 46 ~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~ 125 (221)
T KOG4206|consen 46 FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGH 125 (221)
T ss_pred cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCccccccc
Confidence 457899999999999999999999 7899999999999999887654332110 000000 00000000 0000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHH
Q 027167 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~ 157 (227)
.........+... . .....+...+|+.|||..++.+.|..+|.+|.....++++.. ..+.|||+|.+...|.
T Consensus 126 ~~~~~~~~~p~p~--~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~ 197 (221)
T KOG4206|consen 126 FYNMNRMNLPPPF--L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQAS 197 (221)
T ss_pred ccccccccCCCCc--c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhH
Confidence 0000000000000 1 333667889999999999999999999999998889988875 4679999999988777
Q ss_pred HHHhcCC--cc-CCeEEEEEecC
Q 027167 158 RVSRRSH--EI-CGQQVAIDSAT 177 (227)
Q Consensus 158 ~al~~~~--~~-~g~~l~V~~a~ 177 (227)
.|...+. .+ ....+.|.++.
T Consensus 198 ~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 198 AAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhhhccceeccCceEEecccC
Confidence 7765432 22 36777777764
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.37 E-value=9e-12 Score=106.43 Aligned_cols=170 Identities=19% Similarity=0.302 Sum_probs=104.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCC----C-------cccCCCCCCCccc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRP----V-------GRMSHGGYGAYNA 67 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~----~-------~~~~~~~~~~~~~ 67 (227)
|++|..||+++|||||+|.+.++|.+|+ +|+.+|-|+.|+|...+.+-..... . ....-+. .+...
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~-~g~~Q 388 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGS-GGRNQ 388 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccc-ccHHH
Confidence 4678889999999999999999999998 7899999999998654433221100 0 0000000 00010
Q ss_pred chhHhh-------------hhhccCCCCCC-CCCCCCCCC-------CCCCCCCCCeEEEcCCC--CCCC--------HH
Q 027167 68 YISAAT-------------RYAALGAPTLY-DHPGSFYGR-------GESSQRIGKKIFVGRLP--QEAT--------AE 116 (227)
Q Consensus 68 ~~~~~~-------------~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~l~V~nLp--~~~t--------~~ 116 (227)
...... ........+.. ......... -+....++.++.+.|+= ...| .+
T Consensus 389 l~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~e 468 (549)
T KOG0147|consen 389 LMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRE 468 (549)
T ss_pred HHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHH
Confidence 000000 00000000000 000000001 11112566777788772 2222 25
Q ss_pred HHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027167 117 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (227)
Q Consensus 117 ~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a 176 (227)
|+.+.+.++|+|..|.|.++ +-|+.||.|.+.+.|..|+..+| +|.|+.|.+.|-
T Consensus 469 dV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 469 DVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 78888899999999988665 45899999999999999998887 999999999873
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.2e-11 Score=103.33 Aligned_cols=79 Identities=27% Similarity=0.547 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--cc-CCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~-~g~~l~V~~ 175 (227)
...+.|||+.||-++.|++|.-+|.+.|+|.+++|+.|+.+|.+||||||+|.+.++|+.||..++ +| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 558899999999999999999999999999999999999999999999999999999999997554 55 588888875
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 53
No 58
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=7e-12 Score=80.33 Aligned_cols=69 Identities=35% Similarity=0.640 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 106 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 106 V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
|+|||..+++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|..|+..++ .+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999997554 7788888763
No 59
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.34 E-value=2.3e-11 Score=103.46 Aligned_cols=82 Identities=27% Similarity=0.442 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecCCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 179 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~~~ 179 (227)
..+|||.|||.+++.++|+++|..||.|+...|......++..+|+||+|++.+.++.||+ +...+.+++|.|...++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 4459999999999999999999999999987776643334455999999999999999997 445999999999987775
Q ss_pred CCC
Q 027167 180 DDA 182 (227)
Q Consensus 180 ~~~ 182 (227)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=8.1e-12 Score=84.43 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a 176 (227)
..+..|||.|||+.+|.+++.++|.+||.|..|+|-.... .+|-|||.|++..+|.+|+.++. .++++.+.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3466789999999999999999999999999999976544 57899999999999999998654 889999999987
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
.+.+
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6654
No 61
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=8.3e-12 Score=101.16 Aligned_cols=78 Identities=35% Similarity=0.654 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~ 178 (227)
..+|||+|||..+|+++|.++|..||.|..+.+..+..+++++|+|||+|.+.++|..|+..+ ..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999999999889999999999999999999999755 499999999999654
No 62
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=4.6e-12 Score=108.29 Aligned_cols=83 Identities=30% Similarity=0.542 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~~~ 179 (227)
..|||+|+|+++++++|.++|+..|.|.+++++.|++||+.+||+|++|.+.+++..|+.+++ ++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999999999999999999999999998665 999999999998877
Q ss_pred CCCCC
Q 027167 180 DDAGP 184 (227)
Q Consensus 180 ~~~~~ 184 (227)
+.+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 66544
No 63
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=3.1e-11 Score=78.04 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|+..++ .+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 578999999999999999997554 67899998864
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7.4e-12 Score=104.06 Aligned_cols=85 Identities=26% Similarity=0.485 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC---ccCC--eEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICG--QQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~---~~~g--~~l~ 172 (227)
....-++||+-+|..++|.||+++|++||.|.+|-|++|+.|+.++|||||.|.++++|.+|+..+| .|.| ..|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456789999999999999999999999999999999999999999999999999999999987665 4444 4789
Q ss_pred EEecCCCCCC
Q 027167 173 IDSATPLDDA 182 (227)
Q Consensus 173 V~~a~~~~~~ 182 (227)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9998766554
No 65
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=1e-10 Score=96.72 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=113.4
Q ss_pred cEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCCC
Q 027167 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 89 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (227)
--|.|++.|...|+-|+ ++++.|.|++|+|.++. +.....+..+....+-+.+...++.+|+...++......
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK--H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--- 410 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK--HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--- 410 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeecc--CccccCCCCCCccccccccCCCCchhhccCccccccccc---
Confidence 47999999999999999 79999999999997653 444444444444445555666677777777666555444
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEE-EeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--cc
Q 027167 90 FYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 166 (227)
Q Consensus 90 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i-~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~ 166 (227)
.+++.+|++.|+|.+++|++|+..|..-|-..+. ++.. +.+.+|++.+++.|+|..|+-.+| .+
T Consensus 411 --------~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-----kd~kmal~q~~sveeA~~ali~~hnh~l 477 (492)
T KOG1190|consen 411 --------FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-----KDRKMALPQLESVEEAIQALIDLHNHYL 477 (492)
T ss_pred --------CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC-----CCcceeecccCChhHhhhhccccccccC
Confidence 5678999999999999999999999888755443 3332 246699999999999999987664 55
Q ss_pred C-CeEEEEEecCC
Q 027167 167 C-GQQVAIDSATP 178 (227)
Q Consensus 167 ~-g~~l~V~~a~~ 178 (227)
. +..++|+|+++
T Consensus 478 gen~hlRvSFSks 490 (492)
T KOG1190|consen 478 GENHHLRVSFSKS 490 (492)
T ss_pred CCCceEEEEeecc
Confidence 5 44899999875
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.3e-11 Score=97.96 Aligned_cols=70 Identities=30% Similarity=0.704 Sum_probs=66.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~~~ 179 (227)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||+.++...++.||.|+| .|.|..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999886 99999999999999999887 999999999988877
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=2e-10 Score=95.84 Aligned_cols=82 Identities=16% Similarity=0.324 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHH-hccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYF-SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
...+||.|+|+++.+.+|+++| .+.|+|+.|.++-| ..++++++|.|+|+++|.+++|+++++ ++.||+|.|....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 4459999999999999999999 58899999999999 789999999999999999999998664 8999999999876
Q ss_pred CCCCCC
Q 027167 178 PLDDAG 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
..+..+
T Consensus 123 d~q~~~ 128 (608)
T KOG4212|consen 123 DEQRDQ 128 (608)
T ss_pred chhhhh
Confidence 654433
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.1e-11 Score=93.56 Aligned_cols=132 Identities=23% Similarity=0.390 Sum_probs=97.8
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (227)
-.||+||+|.+..+|+.|+ +++..|++..+.|.++.........+ .++.. .
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~-----~~g~r----------------------~ 86 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP-----RGGDR----------------------R 86 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC-----CCCCc----------------------c
Confidence 3579999999999999999 78999999888888887543322000 00000 0
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--c
Q 027167 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 165 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~ 165 (227)
. .......+..+...++|.+++..+.+.+|.+.|.++|+++...+ ..+++||.|.+.++|..|+..++ +
T Consensus 87 ~-~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 87 S-DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred c-hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchh
Confidence 0 01111222566889999999999999999999999999865544 24589999999999999998665 9
Q ss_pred cCCeEEEEEecC
Q 027167 166 ICGQQVAIDSAT 177 (227)
Q Consensus 166 ~~g~~l~V~~a~ 177 (227)
+.++.|.+.+..
T Consensus 158 ~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 158 LNGRRISVEKNS 169 (216)
T ss_pred hcCceeeecccC
Confidence 999999995543
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.16 E-value=4.3e-10 Score=86.30 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=87.9
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeC---CcEEEEeecCCCCCCCCCCcccC---CCCCCCccc----c-hhHhhhhh
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELG---GSTVVVDRATPKEDDFRPVGRMS---HGGYGAYNA----Y-ISAATRYA 76 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~---gr~i~v~~~~~~~~~~~~~~~~~---~~~~~~~~~----~-~~~~~~~~ 76 (227)
.+=+|||.|.+..+|.+|+ +|+..|+ +..|+++.+.+..+..+...... +........ + ........
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~ 155 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDE 155 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccc
Confidence 3469999999999999999 7899885 68899988877655443322111 000000000 0 00000000
Q ss_pred ccCCCCCCCCCCCCCC------------------------------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC
Q 027167 77 ALGAPTLYDHPGSFYG------------------------------RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 126 (227)
Q Consensus 77 ~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 126 (227)
....+.....+..... ..........||||.||.+++||++|+.+|+.|-
T Consensus 156 ~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 156 GLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP 235 (284)
T ss_pred cccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC
Confidence 0000000000000000 0001122346899999999999999999999998
Q ss_pred CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC
Q 027167 127 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (227)
Q Consensus 127 ~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~ 163 (227)
.....+|... . ...+||++|++.+.|..|+..+
T Consensus 236 gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 236 GFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred CceEEEEecC--C--CcceEeecHHHHHHHHHHHHHh
Confidence 7666666432 1 4568999999999999887643
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=1e-09 Score=91.75 Aligned_cols=171 Identities=18% Similarity=0.299 Sum_probs=108.2
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCC-------------------CcccCCCC-CC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRP-------------------VGRMSHGG-YG 63 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~-------------------~~~~~~~~-~~ 63 (227)
.+|++||||.|+|.++|.+++|+ ++.|++.||+|.|+.....+..+.. ....+..+ .+
T Consensus 81 ~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~gg 160 (608)
T KOG4212|consen 81 ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGG 160 (608)
T ss_pred cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCC
Confidence 35999999999999999999999 6899999999999876543221110 00000000 00
Q ss_pred C--cccchh----Hhhh-------hhccCCCCCC----CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC
Q 027167 64 A--YNAYIS----AATR-------YAALGAPTLY----DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 126 (227)
Q Consensus 64 ~--~~~~~~----~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 126 (227)
. ...+.. ...+ ..+....... -.....+..-....+.-.++||.||...+..+.|++.|.-.|
T Consensus 161 G~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG 240 (608)
T KOG4212|consen 161 GDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG 240 (608)
T ss_pred ccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccce
Confidence 0 000000 0000 0000000000 000111111123345567899999999999999999999999
Q ss_pred CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecC
Q 027167 127 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (227)
Q Consensus 127 ~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~ 177 (227)
.|..|.+.-|+. +.++++|.++|..+-+|..||..+ .-+..++..++...
T Consensus 241 kv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 241 KVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred eeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 999998888844 578999999999998888888643 36667777777643
No 71
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=2.1e-10 Score=74.36 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=50.9
Q ss_pred HHHHHHHHh----ccCCEeEEE-eecCCCC--CCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 115 AEDLRRYFS----RFGRILDVY-VPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 115 ~~~l~~~F~----~~G~i~~i~-~~~d~~~--~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
+++|+++|+ +||.|.+|. +..+..+ +.++|++||+|.+.++|.+|+..++ .+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999985 6666555 8899999999999999999998554 8999998763
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.13 E-value=7.2e-11 Score=96.98 Aligned_cols=85 Identities=40% Similarity=0.635 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEecCC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSATP 178 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~a~~ 178 (227)
...+|||++|+|.++++.|++.|.+||+|.+|.+++|+.++++++|+||+|.+++....++.. .|.|+|+.|.+..|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 578999999999999999999999999999999999999999999999999999988888864 6799999999999999
Q ss_pred CCCCCC
Q 027167 179 LDDAGP 184 (227)
Q Consensus 179 ~~~~~~ 184 (227)
+..+..
T Consensus 85 r~~~~~ 90 (311)
T KOG4205|consen 85 REDQTK 90 (311)
T ss_pred cccccc
Confidence 886654
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.13 E-value=3.1e-10 Score=70.14 Aligned_cols=54 Identities=30% Similarity=0.551 Sum_probs=47.1
Q ss_pred HHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEec
Q 027167 118 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (227)
Q Consensus 118 l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a 176 (227)
|+++|++||.|..+.+.++. +++|||+|.+.++|..|+.. ...+.|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998762 58999999999999999974 45999999999986
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=6.8e-10 Score=97.62 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCC---CcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEecC
Q 027167 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (227)
Q Consensus 104 l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~---~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a~ 177 (227)
|||.||++++|.++|..+|...|.|.+|.|...+... .+.||+||+|.++++|+.|+.. +..+.|+.|.|+++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999999999999999999999887654321 3569999999999999999986 459999999999988
No 75
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.4e-10 Score=91.17 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC---ccC--CeEEEEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EIC--GQQVAID 174 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~---~~~--g~~l~V~ 174 (227)
.+.+|||+.|...-.|||++.+|+.||.|.+|.+.+. ..+.++|||||.|.+..+|+.||..+| .+- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4789999999999999999999999999999999998 446699999999999999999998766 333 4579999
Q ss_pred ecCCCCCCC
Q 027167 175 SATPLDDAG 183 (227)
Q Consensus 175 ~a~~~~~~~ 183 (227)
|+...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 988766654
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.9e-10 Score=91.03 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=69.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC---CccCCeE
Q 027167 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQ 170 (227)
Q Consensus 94 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~---~~~~g~~ 170 (227)
.++....-.+|||++|-..+++.+|+++|.+||+|.+|.+... +++|||+|.+.+.|+.|.++. ..+.|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3344566789999999999999999999999999999999874 569999999999999998643 3889999
Q ss_pred EEEEecCCC
Q 027167 171 VAIDSATPL 179 (227)
Q Consensus 171 l~V~~a~~~ 179 (227)
|.|.|..++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999983
No 77
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-10 Score=93.25 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.++.+.|||--|.+-+|.+||.-+|+.||+|.+|.|++|..|+.+-.||||+|++.+++++|.-++. -|+++.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 5668899999999999999999999999999999999999999999999999999999999987654 77899999998
Q ss_pred cCCC
Q 027167 176 ATPL 179 (227)
Q Consensus 176 a~~~ 179 (227)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7644
No 78
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=8.2e-10 Score=95.35 Aligned_cols=153 Identities=19% Similarity=0.291 Sum_probs=105.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
+++|..||.|+||||.+|-++...+.|+ +++..+.+++|.|+.+.........+...... .
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~------~----------- 383 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS------Q----------- 383 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc------c-----------
Confidence 5789999999999999999999999999 78999999999999998765544333210000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCC--CCCC-CH-------HHHHHHHhccCCEeEEEeecCC-CC--CCcccE
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRL--PQEA-TA-------EDLRRYFSRFGRILDVYVPKDP-KR--TGHRGF 145 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL--p~~~-t~-------~~l~~~F~~~G~i~~i~~~~d~-~~--~~~~g~ 145 (227)
.+.-..........++..|.+.|+ |.++ .+ ++++..+++||.|.+|.+.++. .. .-..|.
T Consensus 384 -------~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~Gk 456 (500)
T KOG0120|consen 384 -------VPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGK 456 (500)
T ss_pred -------cccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCccc
Confidence 000000000111233444555544 1111 11 4577788899999999998872 21 224577
Q ss_pred EEEEecCHHHHHHHHhcCC--ccCCeEEEEEecC
Q 027167 146 GFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 146 afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
.||+|.+.+++++|...++ +|.++.|..+|-.
T Consensus 457 VFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 457 VFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred EEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 8999999999999998776 9999999988743
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.9e-10 Score=93.02 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
-++|||+.+.+.+.|+.|+..|.+||.|++|.+.-|+.|+++++||||+|+-++.|+-|++.+ ..+.||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 578999999999999999999999999999999999999999999999999999999999855 4889999999843
No 80
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.01 E-value=1.3e-09 Score=84.03 Aligned_cols=77 Identities=29% Similarity=0.492 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 101 GKKIFVGRLPQEATAEDLRR----YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
..||||.||...+..++|+. +|++||+|.+|...+ +.+.+|.|||.|.+.+.|-.|+..++ .+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999988 999999999998865 46689999999999999999998665 8889999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
||..+.
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 997654
No 81
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=2.2e-09 Score=92.49 Aligned_cols=82 Identities=26% Similarity=0.568 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a 176 (227)
....+|||.+|...+...||+.+|++||+|+-.+|+++..+.-.++|+||++.+.++|.+||+++| +|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346789999999999999999999999999999999887666679999999999999999999988 999999999988
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7554
No 82
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.98 E-value=1.7e-09 Score=80.11 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=44.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|+++||||||+|.+.++|++|| ++++.|+|+.|+|+++.++..
T Consensus 66 i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 4678999999999999999999999999 588999999999999877654
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.97 E-value=2.3e-08 Score=84.85 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-ccCCeEEEE
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAI 173 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-~~~g~~l~V 173 (227)
...++.++||+..++.++..+|+..-.+ .+.|.-. .+++..+.|+|+|.+.++|..|+.+.. .+..+-|..
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVEl 352 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVEL 352 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhccCCcccCcceeee
Confidence 3778889999999999999999977554 3444333 458889999999999999999997543 333333333
No 84
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=6.6e-09 Score=92.33 Aligned_cols=78 Identities=21% Similarity=0.429 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
...+.||||++|+.++++.||.++|..||+|.+|.++. +++||||.+....+|.+|+.++. .+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 33478999999999999999999999999999998876 58899999999999999998664 88899999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
|..+..
T Consensus 492 a~g~G~ 497 (894)
T KOG0132|consen 492 AVGKGP 497 (894)
T ss_pred eccCCc
Confidence 986654
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3.9e-09 Score=91.19 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=110.9
Q ss_pred CCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227)
....+.|||++|.+.++|..|+ .+...+.|+.+.+...+.+.....---. ..++.
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~------------------~~~~~------ 274 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLS------------------PSQLG------ 274 (500)
T ss_pred ecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhh------------------hcccc------
Confidence 3567889999999999999999 6788889999988766544321110000 00000
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--
Q 027167 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-- 163 (227)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~-- 163 (227)
.-.............+.+||++||..+++++++++...||.+....++.|..++-+++|||.+|.++.....|+..+
T Consensus 275 -~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG 353 (500)
T KOG0120|consen 275 -KVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG 353 (500)
T ss_pred -ccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch
Confidence 00000011112345678999999999999999999999999999999999998899999999999999998888755
Q ss_pred CccCCeEEEEEecCCCC
Q 027167 164 HEICGQQVAIDSATPLD 180 (227)
Q Consensus 164 ~~~~g~~l~V~~a~~~~ 180 (227)
..+.+..|+|..|.+-.
T Consensus 354 m~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 354 MQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhcCceeEeehhhccc
Confidence 48888999999876543
No 86
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.90 E-value=5.9e-09 Score=85.39 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=107.0
Q ss_pred CCCCCCcccEEEEEEcCHHHHHHHH-hcC-ceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCC
Q 027167 4 DQGSKAHRGIGFITFASADSVENLM-VDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (227)
Q Consensus 4 d~~tg~srG~aFV~F~~~~~A~~Ai-~~~-~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
...+..++|++.|.|...+.+..|+ +.. +.+.++.+............ .+..
T Consensus 123 ~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~--~n~~------------------------ 176 (285)
T KOG4210|consen 123 LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRP--KNKL------------------------ 176 (285)
T ss_pred hccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccc--cchh------------------------
Confidence 3456789999999999999999999 444 46666665543332221100 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 82 TLYDHPGSFYGRGESSQRIGKKIF-VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
.........++| |.+|++++++++|+.+|..+|.|+.++++.+..++..+++++|.|.+...+..++
T Consensus 177 ------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 177 ------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ------------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 000022345565 9999999999999999999999999999999999999999999999999999998
Q ss_pred hc-CCccCCeEEEEEecCCCCCCC
Q 027167 161 RR-SHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 161 ~~-~~~~~g~~l~V~~a~~~~~~~ 183 (227)
.. .+.+.++.+.+.+..+.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 245 NDQTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred hcccCcccCcccccccCCCCcccc
Confidence 74 458889999999988876543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=4.4e-09 Score=82.27 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
...+.+||++.|..+++++-|-..|.+|-.....++++|..|++++||+||.|.+++++..|+.. ++.++.+.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45688999999999999999999999998888889999999999999999999999999999964 4588888888776
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.-++
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 55443
No 88
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=8.6e-09 Score=66.71 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=35.8
Q ss_pred CCCCCC--CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEE
Q 027167 2 PKDQGS--KAHRGIGFITFASADSVENLM--VDTHELGGSTVVV 41 (227)
Q Consensus 2 ~~d~~t--g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (227)
+.|+.+ +.++|||||.|.+.++|.+|+ +++..+.|+.|.+
T Consensus 26 ~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 26 YIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 456666 999999999999999999999 6899999999976
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=4.7e-09 Score=79.78 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
|++|+-|+.++|||||.|.+..||++|| +++..|+|+.|.|+.|.
T Consensus 45 IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 45 IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 7899999999999999999999999999 78999999999998774
No 90
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=5e-08 Score=74.23 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc-CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
.....-++|..+|..+.+.++..+|.++ |.++.+++.|+..||.+++||||+|++++.|.-|-+.++ -+.++-|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4456678999999999999999999888 677888888999999999999999999999998877655 5567888888
Q ss_pred ecCCC
Q 027167 175 SATPL 179 (227)
Q Consensus 175 ~a~~~ 179 (227)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86554
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.75 E-value=1.2e-08 Score=84.06 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=96.6
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHh-cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCC---
Q 027167 5 QGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--- 80 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~-~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (227)
+-.|+..|-|||.|..+++|+.|+. +...|+-|.|.+.+++.-+..+ ...|..+.+-
T Consensus 200 rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqq-------------------vlnr~~s~pLi~~ 260 (508)
T KOG1365|consen 200 RPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQ-------------------VLNREVSEPLIPG 260 (508)
T ss_pred CCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH-------------------HHHhhccccccCC
Confidence 3458899999999999999999995 4455666767775554322111 1111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeE--EEeecCCCCCCcccEEEEEecCHHHHH
Q 027167 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILD--VYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (227)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~--i~~~~d~~~~~~~g~afV~f~~~~~a~ 157 (227)
.+..-.+.-.. .-.+......+|-+++||+..+.+||.+||..|. .|.. +.++.+ ..|+..|.|||+|.+.++|.
T Consensus 261 ~~sp~~p~~p~-~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 261 LTSPLLPGGPA-RLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERAR 338 (508)
T ss_pred CCCCCCCCCcc-ccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHH
Confidence 00000000000 0111123377899999999999999999999987 3333 556555 55778899999999999999
Q ss_pred HHHhcCC-cc-CCeEEEEEecC
Q 027167 158 RVSRRSH-EI-CGQQVAIDSAT 177 (227)
Q Consensus 158 ~al~~~~-~~-~g~~l~V~~a~ 177 (227)
.|..+.| .+ ..|.|.|--+.
T Consensus 339 aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 339 AAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHHHHHHhhcccceEEEeecc
Confidence 8876554 33 46777776554
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=8.2e-09 Score=79.97 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHhc-CceeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~~-~~~~~gr~i~v~~~~~ 46 (227)
||.|+.||+|||||||.|.|.+.|.+|+.+ +..|+||+..|+.+.-
T Consensus 44 vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 44 VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 588999999999999999999999999965 6799999999988754
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.68 E-value=1.5e-07 Score=76.02 Aligned_cols=112 Identities=23% Similarity=0.391 Sum_probs=77.3
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC-CCCCCCCCcccCCCCCCCcccchhHhhhhhc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP-KEDDFRPVGRMSHGGYGAYNAYISAATRYAA 77 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
|+.|+.|+.++|||||+|.+.++|..|+ +++..|.|+.|.|.++.+ .......... ......
T Consensus 147 ~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~----- 211 (306)
T COG0724 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN----------LDASFA----- 211 (306)
T ss_pred eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc----------cchhhh-----
Confidence 4578889999999999999999999999 567899999999998754 1000000000 000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCC
Q 027167 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP 137 (227)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~ 137 (227)
................+++.+++..++..++...|..+|.+....+....
T Consensus 212 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 212 ----------KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ----------ccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 00011111224557789999999999999999999999999776665543
No 94
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.3e-06 Score=71.37 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=99.9
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227)
|+-||=|.+.|...++++-|+ ++...|.|+.|+|+.|.-.-.......... ........ +..........-
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~----k~k~~~~k---k~~k~q~k~~dw 252 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKE----KGKCKDKK---KLKKQQQKLLDW 252 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCccccc----ccccccHH---HHHHHHHhhccc
Confidence 788999999999999999998 688999999999998854322111111000 00000000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCC----CCCC-------HHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHH
Q 027167 86 HPGSFYGRGESSQRIGKKIFVGRLP----QEAT-------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 154 (227)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~V~nLp----~~~t-------~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~ 154 (227)
.+. + ..+......++|.+.|+= ...+ +++|.+.+.+||.|.+|.|.-. .+.|.+-|.|.+.+
T Consensus 253 ~pd--~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~e 325 (382)
T KOG1548|consen 253 RPD--R-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNE 325 (382)
T ss_pred CCC--c-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChH
Confidence 000 0 112224457889999882 2233 3567788999999999988633 25789999999999
Q ss_pred HHHHHHhcCC--ccCCeEEEEEecC
Q 027167 155 VADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 155 ~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
+|+.||.-++ .|.||.|..+..-
T Consensus 326 eA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 326 EADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhcCeeecceEEEEEEeC
Confidence 9999997555 9999999988644
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-08 Score=75.98 Aligned_cols=49 Identities=35% Similarity=0.615 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+|-|-.+.++||||||+|...|||.+|| +|..+|.||.|+|+++.|.+.
T Consensus 42 iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 42 IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred cccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 4668889999999999999999999999 678899999999999988654
No 96
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.60 E-value=2e-07 Score=74.06 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
...+|+|.|||..++++||+++|..||.+..+-+..+ ..|.+.|.|-|.|...++|..|++.++ .++|+.|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999999999999999999998888888888 678899999999999999999998665 8889998888654
Q ss_pred CC
Q 027167 178 PL 179 (227)
Q Consensus 178 ~~ 179 (227)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.4e-07 Score=73.36 Aligned_cols=71 Identities=32% Similarity=0.719 Sum_probs=61.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~~ 179 (227)
..|||++||+.+.+.+|..||..||+|..+.+.. +|+||+|.+.-+|..|+..+ .+|++..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999998844 58999999999999999644 4888888888888764
Q ss_pred C
Q 027167 180 D 180 (227)
Q Consensus 180 ~ 180 (227)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 98
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.51 E-value=4.9e-07 Score=71.82 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
......+||+|+.+.+|.+++...|+.||.|..+.++.|..++.+++|+||+|.+.+.++.++. +...|.++.+.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4567789999999999999999999999999999999999988899999999999999999997 667999999999976
Q ss_pred CCC
Q 027167 177 TPL 179 (227)
Q Consensus 177 ~~~ 179 (227)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 544
No 99
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=1.3e-07 Score=71.95 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
-|++.||.|||||||+|++++.|..|- ||++-|.++-|.|.+.-|.
T Consensus 83 sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 83 SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 478999999999999999999999998 7999999999999877554
No 100
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.47 E-value=6.8e-07 Score=73.45 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEe--------EEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~ 167 (227)
.....+|||.+||.++++++|.++|.+++.|. .|.|.+|+.|++.++-|.|.|++...|+.|+... ..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45578999999999999999999999999875 4778889999999999999999999999998744 5999
Q ss_pred CeEEEEEecCCCCC
Q 027167 168 GQQVAIDSATPLDD 181 (227)
Q Consensus 168 g~~l~V~~a~~~~~ 181 (227)
+.+|+|..|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998877664
No 101
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.44 E-value=9.4e-07 Score=72.21 Aligned_cols=78 Identities=17% Similarity=0.391 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEe--------EEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG 168 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g 168 (227)
..+..|||+|||.++|.+++.++|+++|.|. .|++.++ ..|+-+|=|++.|...+++.-|++-+ ..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4466799999999999999999999999775 3788888 45888999999999999999998644 48899
Q ss_pred eEEEEEecC
Q 027167 169 QQVAIDSAT 177 (227)
Q Consensus 169 ~~l~V~~a~ 177 (227)
+.|+|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999775
No 102
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.43 E-value=4.7e-06 Score=64.39 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeec-CCCCCCcccEEEEEecCHHHHHHHHhcCC--cc---CCeEEEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-DPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQVAI 173 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~-d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~---~g~~l~V 173 (227)
.-.||||.+||.++..-+|..+|..|-.-+.+.+.. ++.....+-+|||+|.+..+|+.|+..++ .| .+..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 467999999999999999999999987555554432 22222345899999999999999987544 33 3778999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.+|++.....+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99887655443
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.41 E-value=2.2e-06 Score=71.02 Aligned_cols=124 Identities=21% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227)
.|+--|.|.|.|.+.|.-+.|+ ...|.+.+|.|.|-.+...+-..-.+. +.
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg--------~s-------------------- 149 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGG--------TS-------------------- 149 (508)
T ss_pred hhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCC--------cc--------------------
Confidence 3667789999999999999999 567888999999988776543211110 00
Q ss_pred CCCCCCCCCCCC-CCCCCeEEEcCCCCCCCHHHHHHHHhcc----CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 86 HPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRF----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
....+.. ....-.|-+++||+++++.|+.+||.+- |....|-+++. ..|+..|-|||.|..+++|+.||
T Consensus 150 -----~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL 223 (508)
T KOG1365|consen 150 -----NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFAL 223 (508)
T ss_pred -----ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHH
Confidence 0000000 1112345668999999999999999632 13334544443 45778999999999999999999
Q ss_pred hcCC
Q 027167 161 RRSH 164 (227)
Q Consensus 161 ~~~~ 164 (227)
.+-.
T Consensus 224 ~khr 227 (508)
T KOG1365|consen 224 RKHR 227 (508)
T ss_pred HHHH
Confidence 6443
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.40 E-value=9.4e-06 Score=67.89 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecC
Q 027167 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (227)
Q Consensus 101 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~ 177 (227)
+..|.|.||.. .+|.+-|..+|+-||.|..|+|+.+ .+--|+|++.+...|+-|+. +++.+.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888865 5899999999999999999999887 33579999999999999987 5579999999999886
Q ss_pred CC
Q 027167 178 PL 179 (227)
Q Consensus 178 ~~ 179 (227)
=.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 44
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=7.2e-07 Score=71.53 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
||+|+.||+|+|||||+|.++.+...|. ..+..|+|+.|.|.+-.....
T Consensus 133 lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 133 LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTV 183 (335)
T ss_pred EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccccc
Confidence 6899999999999999999999999999 468899999999987765544
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.35 E-value=1.4e-05 Score=66.26 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=88.1
Q ss_pred ccEEEEEEcCHHHHHHHH----hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCC
Q 027167 11 RGIGFITFASADSVENLM----VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai----~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (227)
+-.|.|+|++.+.|+.++ .+...+.|+...++++++..-...
T Consensus 67 ~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~---------------------------------- 112 (494)
T KOG1456|consen 67 KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERP---------------------------------- 112 (494)
T ss_pred cceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccC----------------------------------
Confidence 346899999999999998 245577888877777754321110
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCC--CCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC
Q 027167 87 PGSFYGRGESSQRIGKKIFVGRL--PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~V~nL--p~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~ 164 (227)
......+++.|.+.-| -+.+|-+-|..++-..|+|..|.|++. .--.|.|+|++.+.|++|-.+++
T Consensus 113 -------g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 113 -------GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred -------CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcc
Confidence 0011233555555544 346899999999999999999999875 23469999999999999976554
Q ss_pred --cc-CC-eEEEEEecCCCC
Q 027167 165 --EI-CG-QQVAIDSATPLD 180 (227)
Q Consensus 165 --~~-~g-~~l~V~~a~~~~ 180 (227)
.| .| ..|+|.||+|..
T Consensus 181 GADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cccccccceeEEEEecCcce
Confidence 33 34 489999998865
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=1.4e-07 Score=70.40 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
||||..||+|+||||++|++.....-|+ +|+..|.||.|+|.......
T Consensus 67 LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 67 LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYK 116 (219)
T ss_pred EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccccc
Confidence 6899999999999999999999999999 68999999999998765543
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=5.8e-07 Score=77.62 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=60.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~ 172 (227)
.....+|+|-|||..+++++|+++|+.||+|..|+.-+. .++.+||+|.|..+|+.|++.+. ++.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 556789999999999999999999999999998765443 67899999999999999998554 88888777
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.30 E-value=1.6e-06 Score=53.29 Aligned_cols=34 Identities=26% Similarity=0.592 Sum_probs=31.8
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
+++|||+|.+.++|+.|+ +++..+.|++|.|+++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 699999999999999999 6899999999999875
No 110
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=2.4e-06 Score=75.81 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCC---CCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP---KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~---~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~ 172 (227)
.+.+++|||+||++.++++.|...|+.||.|.+++++-.+ ...+.+-|+||.|-+..+|++|+..++ .+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557899999999999999999999999999988876432 334457899999999999999998655 77788888
Q ss_pred EEecCCC
Q 027167 173 IDSATPL 179 (227)
Q Consensus 173 V~~a~~~ 179 (227)
+.|+++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 8887543
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=7.7e-06 Score=55.91 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CC---cc-CCeEEEE
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SH---EI-CGQQVAI 173 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~---~~-~g~~l~V 173 (227)
.||.|+|+|...|.++|.+++... |....+.++-|..+.-+.|||||.|.+++.|.+-... .. .+ ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988643 4566678888888888999999999999998876542 22 23 3556688
Q ss_pred EecCC
Q 027167 174 DSATP 178 (227)
Q Consensus 174 ~~a~~ 178 (227)
.||+=
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88763
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.26 E-value=3.3e-05 Score=64.05 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=87.2
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
.|-|.|++.|....++|+ +|+..+.|.+|.|..+...-...-..--..+...+-.+...+.-.|+..
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFss----------- 393 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSS----------- 393 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCC-----------
Confidence 478999999999999999 7888889999998765433211110000000000000000111111111
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~ 163 (227)
...........++++|+.-|.|..+||+.|.++|..-+ ..++++|..-+ +.+ ..-+.++|++.++|..||..+
T Consensus 394 p~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~ 467 (494)
T KOG1456|consen 394 PEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKL 467 (494)
T ss_pred hhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHHHHHHHHHh
Confidence 11111222356788999999999999999999997665 34567776653 222 235799999999999998644
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=7e-07 Score=68.68 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=59.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~ 174 (227)
...+.||||+||...++++-|.++|-+.|.|..+.|..+.. ++.+ ||||.|+++....-|++ ++..+.++.+.|.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34578999999999999999999999999999999988754 3344 99999999988888864 4445555554444
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.20 E-value=1.6e-06 Score=74.70 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++.|+.||+.|||||++|.+.++|..|+ +++.++.||+|+|.++.....
T Consensus 50 ~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 50 LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 4689999999999999999999999999 689999999999999876544
No 115
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.19 E-value=2.1e-06 Score=54.87 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=32.2
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEE
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (227)
.++.++|||||+|.+.++|++|+ ++++.+.|+.|+
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 56899999999999999999999 689999999875
No 116
>smart00360 RRM RNA recognition motif.
Probab=98.18 E-value=3.1e-06 Score=53.55 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=34.5
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEe
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVD 42 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~ 42 (227)
.++.++.++|||||+|.+.++|..|+ +++..+.|+.|.|+
T Consensus 30 ~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 30 RDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred eCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 45557899999999999999999999 46788999998873
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=7.1e-06 Score=72.75 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=97.4
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHHhc-CceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai~~-~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
+++..+...|-++|+|....++++|+.. ...+-.|.+.+..+........++....+.... ....++.+
T Consensus 344 ~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~----------~~~~hg~p 413 (944)
T KOG4307|consen 344 ENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPV----------IQNNHGRP 413 (944)
T ss_pred hhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCc----------ccccCCCC
Confidence 4455455578999999999999999954 445556777775443332211111100000000 00001111
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE-EEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 82 TLYDHPGSFYG-RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
.........-+ ....+......|||..||..+++.++.++|...-.|++ |.|-+- .+++.++.|||.|..++++.+|
T Consensus 414 ~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a 492 (944)
T KOG4307|consen 414 IAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTA 492 (944)
T ss_pred CCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchh
Confidence 00000000000 01233556889999999999999999999987776666 666655 6677899999999998888888
Q ss_pred HhcC--CccCCeEEEEE
Q 027167 160 SRRS--HEICGQQVAID 174 (227)
Q Consensus 160 l~~~--~~~~g~~l~V~ 174 (227)
+... +.+.-+.|+|.
T Consensus 493 ~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 493 SSVKTKFYPGHRIIRVD 509 (944)
T ss_pred hhcccccccCceEEEee
Confidence 7533 34455667776
No 118
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.16 E-value=3.1e-06 Score=54.39 Aligned_cols=38 Identities=21% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEE
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (227)
++++. +.++|+|||+|.+.++|.+|+ .++..++|+.|+
T Consensus 31 ~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 31 IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 34555 899999999999999999999 456899999874
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=4.4e-05 Score=65.74 Aligned_cols=65 Identities=32% Similarity=0.443 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh-ccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~ 162 (227)
..+.+||||++||--++.++|-.+|. -||.|..+-|-.|++-.+++|-+=|+|.+...-.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 56689999999999999999999997 999999999999988899999999999999999999874
No 120
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=2.2e-06 Score=63.81 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=36.9
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
....|||||+|+++.||++|+ |++..|+|..|+|+.+.-..
T Consensus 44 rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 44 RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 467899999999999999999 89999999999999886543
No 121
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=2.8e-06 Score=69.03 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=36.8
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
.-|||||||.|++.+||++|- +.+..+.||+|.|+.++.+
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 469999999999999999999 5788999999999999876
No 122
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.07 E-value=4e-06 Score=59.77 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=41.6
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
-|+.||-.||||.|+|++.++|++|| +|+..|.|+.|.|.|+..+
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 37899999999999999999999999 7899999999999998654
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=5.4e-06 Score=75.00 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=83.7
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHh-cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~-~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
.++++-||+|+|+|..+++|.+||. ....+.|
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------------------------------------------- 735 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------------------------------------------- 735 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhhhh-----------------------------------------------
Confidence 3567889999999999999999982 2222222
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC
Q 027167 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (227)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~ 163 (227)
...|+|.|.|+..|.++|+.++.++|.+++.+++.. ..|+++|.|+|.|.+..++.+++...
T Consensus 736 -----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 -----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred -----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccc
Confidence 246889999999999999999999999999987776 56889999999999999999887543
Q ss_pred C--ccCCeEEEEEecCC
Q 027167 164 H--EICGQQVAIDSATP 178 (227)
Q Consensus 164 ~--~~~g~~l~V~~a~~ 178 (227)
. .+.-+.+.|..+.|
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 2 33333444444333
No 124
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.94 E-value=1.7e-05 Score=56.21 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
-|+.|....|||||+|-+.++|+.|| .++..|+.+.|++.+...-..
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~e 118 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVE 118 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchh
Confidence 47889999999999999999999999 689999999999988655443
No 125
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=1.2e-05 Score=56.06 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=36.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 163 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~ 163 (227)
..|+|.+++..++.++|++.|+.||.|..|.+.+. ...|+|.|.+.+.|+.|+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHH
Confidence 46888999999999999999999999999998764 347999999999999998643
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.89 E-value=6e-06 Score=64.99 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
+|||+.||+|+||+||.|.+..|+..|| +++.-++.|.|.+..+.-+.
T Consensus 222 viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 222 VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 5899999999999999999999999999 68888899999887665544
No 127
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.89 E-value=5.9e-05 Score=49.53 Aligned_cols=66 Identities=20% Similarity=0.508 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEE
Q 027167 102 KKIFVGRLPQEATAEDL----RRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 174 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l----~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~ 174 (227)
..|+|.|||.+.+...| ++++..+| +|..| ..+-|+|.|.+.+.|..|.+.+. .+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999988765 55666776 55554 23579999999999999997554 8899999999
Q ss_pred ecC
Q 027167 175 SAT 177 (227)
Q Consensus 175 ~a~ 177 (227)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 128
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.88 E-value=2.3e-05 Score=62.78 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=34.8
Q ss_pred cccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 10 HRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
++|||||+|.++++|+.|| +++..|.|+.|.|..+...
T Consensus 42 ~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 5799999999999999999 7899999999999987654
No 129
>smart00362 RRM_2 RNA recognition motif.
Probab=97.82 E-value=3.9e-05 Score=48.54 Aligned_cols=35 Identities=26% Similarity=0.611 Sum_probs=31.2
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEe
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVD 42 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~ 42 (227)
+.++|+|||+|.+.++|+.|+ +++..+.|+.|.|+
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 678899999999999999999 56789999998873
No 130
>PLN03213 repressor of silencing 3; Provisional
Probab=97.76 E-value=2.5e-05 Score=66.94 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=36.8
Q ss_pred CCCCCcccEEEEEEcCH--HHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 5 QGSKAHRGIGFITFASA--DSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~--~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
|.|| ||||||+|.+. .++.+|| +++.++.|+.|+|+.|.+.
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 6677 99999999987 6789999 7999999999999999774
No 131
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.70 E-value=0.00014 Score=44.13 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
..|-|.+.+....+. +..+|..||+|+.+.+.. ...+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467889999886644 556888999999998862 3458999999999999985
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=3.5e-05 Score=63.47 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
||+|+.||.|.-||||+|.+.+++++|. |.+..|+++.|.|.++.+-.
T Consensus 271 VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 271 VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 6899999999999999999999999999 78999999999998876543
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=2.3e-05 Score=60.51 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
..++.| ||||.|+++-...-|+ +|+..+.++++.++.-
T Consensus 45 ~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r--------------------------------------- 84 (267)
T KOG4454|consen 45 QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR--------------------------------------- 84 (267)
T ss_pred ccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc---------------------------------------
Confidence 346677 9999999999999999 6899999998877533
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 84 YDHPGSFYGRGESSQRIGKKIFVGR----LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
.++ |...++++.+.+.|+.-+.+..+++.++.+ ++++.+.|+++......-.+
T Consensus 85 ----------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 85 ----------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ----------------------cCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 222 566778899999999999999999999855 77888999987755444444
Q ss_pred H
Q 027167 160 S 160 (227)
Q Consensus 160 l 160 (227)
+
T Consensus 142 ~ 142 (267)
T KOG4454|consen 142 L 142 (267)
T ss_pred h
Confidence 3
No 134
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.00048 Score=54.51 Aligned_cols=72 Identities=29% Similarity=0.426 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC------ccCCeEEEEE
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQQVAID 174 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~------~~~g~~l~V~ 174 (227)
+.|||.||...+..+.|.+.|+.||.|....+..| ..++..+-++|.|...-.|.+|+.... ...+++..|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 57999999999999999999999999998777777 567788899999999888888765321 4455555544
No 135
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.52 E-value=0.00022 Score=45.22 Aligned_cols=35 Identities=26% Similarity=0.609 Sum_probs=30.7
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEee
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDR 43 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~ 43 (227)
.++|+|||+|.+.++|..|+ +++..+.|+.+.|.+
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 67899999999999999999 466678999998863
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.51 E-value=8e-06 Score=68.60 Aligned_cols=118 Identities=15% Similarity=0.285 Sum_probs=91.7
Q ss_pred cccEEEEEEcCHHHHHHHH--hc-CceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~-~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (227)
-.||+||.+.+...|.+|+ ++ ..++.|+.+.+....++...
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr------------------------------------ 79 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR------------------------------------ 79 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH------------------------------------
Confidence 3579999999999999999 34 44889999999888766432
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEe-ecCCCCCCcccEEEEEecCHHHHHHHHhcC--
Q 027167 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV-PKDPKRTGHRGFGFVTFAEEVVADRVSRRS-- 163 (227)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~-~~d~~~~~~~g~afV~f~~~~~a~~al~~~-- 163 (227)
+..+-|+|+|+...++.|..++.+||.+..|.. ..|.. .-..-|+|.+.+.+..||.++
T Consensus 80 --------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 80 --------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred --------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 345779999999999999999999999988855 33322 234456777888888888754
Q ss_pred CccCCeEEEEEecCCCCC
Q 027167 164 HEICGQQVAIDSATPLDD 181 (227)
Q Consensus 164 ~~~~g~~l~V~~a~~~~~ 181 (227)
+.+....++|.|-.....
T Consensus 142 ~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hHhhhhhhhcccCchhhh
Confidence 488888999998665543
No 137
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.45 E-value=0.00022 Score=56.37 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.4
Q ss_pred CCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCC
Q 027167 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~ 46 (227)
+.+++||||+|.++++|+.|+ +++..|.+++|.|.....
T Consensus 41 ~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 41 GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 456689999999999999999 799999999999976543
No 138
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.40 E-value=0.00051 Score=56.45 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCCHHH----H--HHHHhccCCEeEEEeecCCCCCCc-ccE--EEEEecCHHHHHHHHh--cCCccCC
Q 027167 100 IGKKIFVGRLPQEATAED----L--RRYFSRFGRILDVYVPKDPKRTGH-RGF--GFVTFAEEVVADRVSR--RSHEICG 168 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~----l--~~~F~~~G~i~~i~~~~d~~~~~~-~g~--afV~f~~~~~a~~al~--~~~~~~g 168 (227)
..+-+||-+||+.+..++ | .++|.+||+|..|.|-+......+ -+. .|++|.+.++|..||. ....++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 355689999999887776 3 489999999998887654311111 122 3999999999999996 4568899
Q ss_pred eEEEEEecCCC
Q 027167 169 QQVAIDSATPL 179 (227)
Q Consensus 169 ~~l~V~~a~~~ 179 (227)
+.|++.|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987654
No 139
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.39 E-value=0.00013 Score=59.97 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC--CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeE
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQ 170 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~ 170 (227)
..++||+||-|++|++||.+.++..| .+.++++..++.+|.++|||+|...+.....+.++-+ .+|.|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 56789999999999999999999887 6778899999899999999999999877766665422 3666653
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.34 E-value=0.00076 Score=60.33 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=60.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEe-EEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.|-|.|+|++++-+||.+||..|-.+- +|++.+. +.|+..|.|-|.|++.++|..|...+ +.|..++|.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 677899999999999999999997654 5666655 77889999999999999999998744 588888887754
No 141
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.21 E-value=0.0022 Score=44.13 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=50.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEE-eecCC------CCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VPKDP------KRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQV 171 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~-~~~d~------~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l 171 (227)
.+.-|.|-++|+. ....+.+.|++||.|.+.. +.++. .......+-.|+|.++.+|.+||. ++..+.|..|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3566889999998 5677899999999998765 11110 001135699999999999999996 6667777644
Q ss_pred -EEEecC
Q 027167 172 -AIDSAT 177 (227)
Q Consensus 172 -~V~~a~ 177 (227)
-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466653
No 142
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.08 E-value=0.001 Score=45.57 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
.|...+|-|||.|++..||.+|+ +++..++++.+.|-+..+..
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45678999999999999999999 78999999999998877653
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.05 E-value=0.00057 Score=62.68 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccC--CeEEEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEIC--GQQVAID 174 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~--g~~l~V~ 174 (227)
.....+++++|+.++....|..+|..||.|..|.+-. ...||++.|++...++.|+..+ ..|. .+.++|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 4577899999999999999999999999999987744 3569999999999999998633 3444 3568888
Q ss_pred ecCCC
Q 027167 175 SATPL 179 (227)
Q Consensus 175 ~a~~~ 179 (227)
++.+.
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 87654
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.04 E-value=0.0047 Score=40.62 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=40.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
.++..+|. +|..+...||.++|+.||.|. |.++.| .-|||.+.+.+.|..++.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHH
Confidence 35666776 999999999999999999885 777765 369999999999888764
No 145
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.03 E-value=0.0032 Score=53.40 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecC---CCCCC----------cccEEEEEecCHHHHHHHHhc
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD---PKRTG----------HRGFGFVTFAEEVVADRVSRR 162 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d---~~~~~----------~~g~afV~f~~~~~a~~al~~ 162 (227)
..+..+|.+-|||.+-.-+.|.++|+.+|.|..|+|... +...+ .+-+|+|+|+..+.|.+|.+.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 467889999999999888999999999999999999765 22211 256799999999999999653
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.90 E-value=0.001 Score=53.04 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~ 45 (227)
|++|+.++.+|||+||+|.+.+.++.|+ +++..|.++.+.|.+..
T Consensus 133 i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 133 VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred eeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 5789999999999999999999999999 69999999999986653
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.89 E-value=0.0016 Score=44.53 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeC----CcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELG----GSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~----gr~i~v~~~~ 45 (227)
||.|-.++.+.|||||.|.+++.|.+.. .++..+. .+...|.+|.
T Consensus 35 LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 35 LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 5778899999999999999999999987 4566553 3445566653
No 148
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.01 Score=51.52 Aligned_cols=63 Identities=27% Similarity=0.538 Sum_probs=47.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCC---CCccc---EEEEEecCHHHHHHHHh
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRG---FGFVTFAEEVVADRVSR 161 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~---~~~~g---~afV~f~~~~~a~~al~ 161 (227)
.....+|||++||++++|+.|...|..||.+. +.++..... -.++| |+|+.|+++.....-+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 44578999999999999999999999999764 555532111 12355 99999999877666554
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=4.9e-05 Score=68.99 Aligned_cols=62 Identities=29% Similarity=0.302 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
...++||+||+..+.+.+|...|..++.+..+++.-...+++.+|.|++.|..++++.+|+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 35689999999999999999999999988877766444677889999999999999988874
No 150
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.63 E-value=0.015 Score=42.55 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCCCCeEEEcCCC-----CCCCHH----HHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccC
Q 027167 98 QRIGKKIFVGRLP-----QEATAE----DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp-----~~~t~~----~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~ 167 (227)
.+++.||.|.-+. ...-.+ +|.+.|..||.+.-+++.-+ .-.|+|.+-..|.+|+. ++.+++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEEC
Confidence 4568888887555 122222 67788999999888888664 57999999999999996 677999
Q ss_pred CeEEEEEecCC
Q 027167 168 GQQVAIDSATP 178 (227)
Q Consensus 168 g~~l~V~~a~~ 178 (227)
|+.|+|+...|
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999997554
No 151
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.017 Score=50.85 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=57.8
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccC-Ce
Q 027167 99 RIGKKIFVGRLPQEAT------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQ 169 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t------~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~-g~ 169 (227)
..+..|+|.|.|---. ..-|..+|+++|+|+...++.+..++ .+||.|++|.+..+|+.|+++++ .|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4567889999985322 22356899999999999999886655 99999999999999999997544 444 45
Q ss_pred EEEEE
Q 027167 170 QVAID 174 (227)
Q Consensus 170 ~l~V~ 174 (227)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55555
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.42 E-value=0.0042 Score=52.17 Aligned_cols=75 Identities=12% Similarity=0.207 Sum_probs=57.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCC---CCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~---~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
..|.|.||.+++|.++++.+|.-.|+|..++|+..... ......|||.|.+...+..|-. ....+-++.|.|.-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 37899999999999999999999999999999874322 2345689999999877766642 333666777776643
No 153
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.038 Score=34.43 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcc---CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRF---GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~ 162 (227)
...|+|.|+. +++-+||+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4689999995 46778899999988 134578888872 489999999999999865
No 154
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.16 E-value=0.031 Score=40.62 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCCeEEEcCCCCCC----CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-ccCCeEEEE
Q 027167 99 RIGKKIFVGRLPQEA----TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAI 173 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-~~~g~~l~V 173 (227)
++-.||.|+=|..++ +-..+...++.||+|.++.+.- +.-|.|.|.+...|.+|+...+ ...|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 345678787555443 3445567778999999987742 3469999999999999998776 667888888
Q ss_pred EecC
Q 027167 174 DSAT 177 (227)
Q Consensus 174 ~~a~ 177 (227)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8753
No 155
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.88 E-value=0.03 Score=45.44 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCEeEEEeecCCCCCCc-ccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 115 AEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 115 ~~~l~~~F~~~G~i~~i~~~~d~~~~~~-~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
++++++.+.+||+|..|-|..++..... .---||+|+..+.|-+|+..+ -.|.|+.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4578899999999998877766432222 234699999999999998644 4899999887753
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.49 E-value=0.01 Score=50.43 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC---ccCCeEEEEEecCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICGQQVAIDSATP 178 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~---~~~g~~l~V~~a~~ 178 (227)
+.+|++||.+.++..||..+|...--..+-.++. ..+|+||...+..-|.+|++.+. ++.|..+.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997542111112221 24799999999999999997543 89999999999998
Q ss_pred CCCCC
Q 027167 179 LDDAG 183 (227)
Q Consensus 179 ~~~~~ 183 (227)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 87543
No 157
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.37 E-value=0.0074 Score=47.98 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred HHHHHHHh-ccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecC
Q 027167 116 EDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 116 ~~l~~~F~-~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
+||...|+ +||+|.++.|..+ ..-.-.|-++|.|...++|++|+..++ .+.|++|++.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555665 9999998866554 333346789999999999999998655 8999999888754
No 158
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.31 E-value=0.026 Score=46.79 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=33.8
Q ss_pred CcccEEEEEEcCHHHHHHHHh---cCceeCCcEEEEeecCCC
Q 027167 9 AHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPK 47 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~---~~~~~~gr~i~v~~~~~~ 47 (227)
..+++|||+|.+.+.|+.|.+ +...|+|++|.|.|..++
T Consensus 262 ~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 262 PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 356799999999999999993 566889999999999883
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.22 E-value=0.035 Score=36.66 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=27.0
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
+.+.|.|.|.+.+.|++|. +++..+.|++|.|.+..
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 5678999999999999999 78999999999998763
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.20 E-value=0.026 Score=49.96 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-----ccCCeE
Q 027167 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EICGQQ 170 (227)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-----~~~g~~ 170 (227)
....++.|||.||---.|.-+|+.+++.-| .|++. ++-. -+..|||.|.+.++|...+..+| .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 466789999999988889999999999555 44444 3322 46689999999999988766554 445777
Q ss_pred EEEEecCCC
Q 027167 171 VAIDSATPL 179 (227)
Q Consensus 171 l~V~~a~~~ 179 (227)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887543
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.92 E-value=0.016 Score=48.83 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
..+++|.+|+..+...++.+.|..+|++...++-.. ....+|-+.|........|+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH
Confidence 367999999999999999999999999887766432 234466688877666666664
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.91 E-value=0.016 Score=46.16 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCC--------CCc----ccEEEEEecCHHHHHHHHh--cCCc
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR--------TGH----RGFGFVTFAEEVVADRVSR--RSHE 165 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~--------~~~----~g~afV~f~~~~~a~~al~--~~~~ 165 (227)
..-.||++++|+..+..-|+++|+.||+|=.|.+.+...+ +.+ ...+.|+|.+...|..+.. +...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999988888765433 112 2336789998888877754 4446
Q ss_pred cCCeE
Q 027167 166 ICGQQ 170 (227)
Q Consensus 166 ~~g~~ 170 (227)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 66653
No 163
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.88 E-value=0.012 Score=48.54 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=58.1
Q ss_pred CCCeEEEcCCCCCCCHHHH---HHHHhccCCEeEEEeecCCC--CCC-cccEEEEEecCHHHHHHHHhcCC--ccCCeEE
Q 027167 100 IGKKIFVGRLPQEATAEDL---RRYFSRFGRILDVYVPKDPK--RTG-HRGFGFVTFAEEVVADRVSRRSH--EICGQQV 171 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l---~~~F~~~G~i~~i~~~~d~~--~~~-~~g~afV~f~~~~~a~~al~~~~--~~~g~~l 171 (227)
..+-+||-+|+..+..+++ .+.|.+||.|.+|.+.++.. ... ...-++|+|+..++|..||...+ .+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3466789999988766554 37899999999998888752 111 12337999999999999987544 6667776
Q ss_pred EEEecCCCC
Q 027167 172 AIDSATPLD 180 (227)
Q Consensus 172 ~V~~a~~~~ 180 (227)
++.+..++.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 666665554
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.53 E-value=0.068 Score=35.81 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=44.5
Q ss_pred EEEEEcCHHHHHHHHh-cCc--eeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCCCC
Q 027167 14 GFITFASADSVENLMV-DTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 90 (227)
Q Consensus 14 aFV~F~~~~~A~~Ai~-~~~--~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (227)
|.|.|.++.-|++.+. ..| .+++..+.|+-. |.....- .++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~-P~~~~~~--------------------~k~--------------- 44 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS-PVTLGHL--------------------QKF--------------- 44 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE-eEecCCc--------------------eEE---------------
Confidence 6899999999999994 444 556666666422 1110000 000
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHH
Q 027167 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122 (227)
Q Consensus 91 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 122 (227)
.........+|.|.|||....+++|++.+
T Consensus 45 ---qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 45 ---QVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ---EEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 00013457899999999999999998654
No 165
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=94.17 E-value=0.06 Score=49.26 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=37.1
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.+||||||.+...++|.+|+ ++++.+.++.|+|.|+..+..
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 58999999999999999999 688999999999999976643
No 166
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.71 E-value=0.049 Score=47.02 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=54.0
Q ss_pred eEEEcCCCCCC-CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH-HhcCCccCCeEEEEEecCC
Q 027167 103 KIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 178 (227)
Q Consensus 103 ~l~V~nLp~~~-t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a-l~~~~~~~g~~l~V~~a~~ 178 (227)
.|-+.-.|+.+ +.++|...|.+||.|..|.+-.. --.|.|+|.+..+|-.| ......|+++.|+|.|-.+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34444445543 66789999999999999988543 33689999999998555 4566799999999999877
No 167
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.17 E-value=0.23 Score=43.91 Aligned_cols=72 Identities=10% Similarity=0.248 Sum_probs=54.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhc--cCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh----cCCccCCe
Q 027167 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR----RSHEICGQ 169 (227)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~----~~~~~~g~ 169 (227)
.+...-+.|.|+-||.++-.|+++.+|.. +-++.+|.+-.+ + -=||+|++..||+.|.+ ..++|-|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-D------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-C------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 33445566788999999999999999964 667888887654 1 13999999999999954 34577787
Q ss_pred EEEEE
Q 027167 170 QVAID 174 (227)
Q Consensus 170 ~l~V~ 174 (227)
.|..+
T Consensus 243 pImAR 247 (684)
T KOG2591|consen 243 PIMAR 247 (684)
T ss_pred chhhh
Confidence 76544
No 168
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=92.76 E-value=0.24 Score=44.00 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=36.3
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHHhcCc--eeCCcEEEEeecCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATP 46 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai~~~~--~~~gr~i~v~~~~~ 46 (227)
|.+-.|.-.+-|+||.+.+.++|.+||.+.| +|.|+-|.|..+..
T Consensus 438 VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 438 VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3444455567899999999999999996544 99999999988754
No 169
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.38 E-value=1.3 Score=36.47 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeE-EEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ-VAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~-l~V~~a~~ 178 (227)
+.=|.|-++|+.-+ ..|..+|.+||.|++..... .-.|-+|.|.++-+|++||. +...|+|.. |-|.-+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 55577778888744 56788999999998765442 34589999999999999996 555666654 34555444
Q ss_pred CC
Q 027167 179 LD 180 (227)
Q Consensus 179 ~~ 180 (227)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 170
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.15 E-value=0.2 Score=38.30 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-cCCE---eEEEeecCCCC--CCcccEEEEEecCHHHHHHHHhc--CCccC---C
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSR-FGRI---LDVYVPKDPKR--TGHRGFGFVTFAEEVVADRVSRR--SHEIC---G 168 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i---~~i~~~~d~~~--~~~~g~afV~f~~~~~a~~al~~--~~~~~---g 168 (227)
...+|.|++||+++|++++.+.++. ++.- ..+.-...... .....-|||.|.+.+++..-... ++.|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999887766 5544 33331122111 11345699999999886665543 33221 2
Q ss_pred --eEEEEEecCC
Q 027167 169 --QQVAIDSATP 178 (227)
Q Consensus 169 --~~l~V~~a~~ 178 (227)
..-.|.+|.=
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2456666654
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.11 E-value=0.17 Score=44.85 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCC-cEEEEe
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG-STVVVD 42 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~g-r~i~v~ 42 (227)
|.|..+| ++||.|++|.+..+|+.|+ ++++.|+- +...|.
T Consensus 97 P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 97 PIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred ccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 4466655 9999999999999999999 67888864 455554
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.99 E-value=1 Score=34.65 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC----ccCCeEEEEEecCCCC
Q 027167 114 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATPLD 180 (227)
Q Consensus 114 t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~----~~~g~~l~V~~a~~~~ 180 (227)
..+.|+++|..++.+..+..++. -+-..|.|.+.+.|..|...++ .+.|..++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999998887776663 3468999999999999976544 7899999999985544
No 173
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=90.97 E-value=0.44 Score=38.27 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+|+|.|.|=|.|...+||.+|| .++.-++|+.|.+....+....
T Consensus 120 ~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 120 AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 5899999999999999999999 5789999999998877665443
No 174
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=89.96 E-value=0.22 Score=41.60 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=41.5
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
-+|+.|++.||=|-|.|.+...|+.|+ .++..+.+.+|+|..+..+.
T Consensus 107 y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 107 YTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 478999999999999999999999999 57889999999997776554
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.64 E-value=0.21 Score=39.95 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=35.6
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
+|...-.-+|-++|.|...++|++|+ +|+.++.|++|...+.
T Consensus 102 c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 102 CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44444566789999999999999999 7999999999998765
No 176
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=89.11 E-value=0.89 Score=39.56 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=33.7
Q ss_pred CCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~ 48 (227)
+++..||||+|.+.+.+..|| .+...|+++++.|+.-.+..
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 344489999999999999999 46778899999998766543
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.44 E-value=0.83 Score=33.59 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=29.5
Q ss_pred cEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 12 GIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
+.-+|.|.+-+.|.+|+ +++.++.|+.|.|+.-+|.
T Consensus 71 ~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 45689999999999999 8999999999999877664
No 178
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.06 E-value=8.4 Score=35.66 Aligned_cols=67 Identities=6% Similarity=0.049 Sum_probs=44.7
Q ss_pred CeEEEc-CCCCCCCHHHHHHHHhccCCEe-----EEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEE
Q 027167 102 KKIFVG-RLPQEATAEDLRRYFSRFGRIL-----DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 173 (227)
Q Consensus 102 ~~l~V~-nLp~~~t~~~l~~~F~~~G~i~-----~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V 173 (227)
.++||. +=-..++..+|..++..-+.|. .|+|..+ |.||+... +.+...+..+ ..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 346664 4456788889988887666554 4666543 78888764 3345555444 3788999999
Q ss_pred EecC
Q 027167 174 DSAT 177 (227)
Q Consensus 174 ~~a~ 177 (227)
..+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.00 E-value=0.11 Score=48.44 Aligned_cols=62 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
...+.+||++||+..+++.+|+..|..+|+|.+|.|.+... +..-.++||.|.+...+-.|.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak 430 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAK 430 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccc
Confidence 34578999999999999999999999999999988866522 223458899998877666664
No 180
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=86.85 E-value=2.3 Score=26.97 Aligned_cols=62 Identities=13% Similarity=0.271 Sum_probs=44.4
Q ss_pred HHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCC
Q 027167 116 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 178 (227)
Q Consensus 116 ~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~ 178 (227)
++|.+.|...| .+..+.-+..+.+......-||+++...+ .+-+.+...+++..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCC
Confidence 46788888888 77788887776666677778888876554 3334556688888888776543
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.13 E-value=4.9 Score=25.77 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=34.5
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhccC-----CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEE
Q 027167 103 KIFVG-RLPQEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (227)
Q Consensus 103 ~l~V~-nLp~~~t~~~l~~~F~~~G-----~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~ 174 (227)
++||. +--..++..+|..++...+ .|=.|++..+ |+||+.... .|..++.. ...+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 3345688889998887664 3446777554 889987643 55555554 348889999988
Q ss_pred ec
Q 027167 175 SA 176 (227)
Q Consensus 175 ~a 176 (227)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 182
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.03 E-value=0.41 Score=42.35 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.1
Q ss_pred CCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEE
Q 027167 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVV 40 (227)
Q Consensus 4 d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~ 40 (227)
++.|...+|..||+|-|..+|+.|+ ++..++.|+.|.
T Consensus 105 ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 105 IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3678889999999999999999999 678899888877
No 183
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=85.96 E-value=0.64 Score=43.28 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC----ccCCeEEEEEecCC
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATP 178 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~----~~~g~~l~V~~a~~ 178 (227)
+.++.|.+-+.+-.-|..+|.+||.+.++...++- ..|.|.|.+.+.|..|+..++ ...|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44555667777888899999999999999888862 379999999999999987554 44577899999998
Q ss_pred CCCCCCC
Q 027167 179 LDDAGPS 185 (227)
Q Consensus 179 ~~~~~~~ 185 (227)
.+.-+++
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 8776654
No 184
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.89 E-value=0.64 Score=34.21 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=57.2
Q ss_pred cccEEEEEEcCHHHHHHHHh-cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~-~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
..++..+.|.+.+++++++. ....+++..+.++.-.|........
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~---------------------------------- 99 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK---------------------------------- 99 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc----------------------------------
Confidence 46788899999999999984 4557788888887665443211100
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCEeEEEeec
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPK 135 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~i~~~~ 135 (227)
.....-=|-|.|||.. .+++-++.+-+.+|++..+....
T Consensus 100 --------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 100 --------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred --------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0011222445699997 67788899999999998887644
No 185
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=84.56 E-value=2.9 Score=26.51 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=43.9
Q ss_pred HHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecC
Q 027167 116 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (227)
Q Consensus 116 ~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~ 177 (227)
++|++.|+..| .+..+..+..+.+..+...-+|......+-.. +.+.+.++++.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCc
Confidence 46888898888 77888888877766677777888765433222 556678999998887543
No 186
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.54 E-value=0.68 Score=41.87 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=54.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
.+...+|||+|+...+..+-++.+...+|.|.++.... |+|..|..+.....|+..+ ..+++..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 45578999999999999999999999999887765533 8999999998888887543 36666665544
No 187
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=82.88 E-value=1 Score=37.20 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=54.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
....++|++++.+++.+.+...++..+|......+........+++++.+.|...+.+..|+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 357789999999999999999999999977777666655667789999999999999999986
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.34 E-value=16 Score=25.60 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
.+.+...|..++-++|..+.+.+- .|..+++++|.. .++-.+++.|.+..+|..-..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHH
Confidence 344444555566667766666654 567889998733 257789999999999888654
No 189
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=77.30 E-value=4.6 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=28.0
Q ss_pred cccEEEEEEcCHHHHHHHH-hcCceeCCcEEE-Eeec
Q 027167 10 HRGIGFITFASADSVENLM-VDTHELGGSTVV-VDRA 44 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~-v~~~ 44 (227)
....-.|.|.++.+|.+|| .|+..|.|.-|. |.+.
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 3457889999999999999 789999887664 5555
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.19 E-value=17 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
+..|+|=.+|..++-.||..|...+- .|..|++++|... ++=..++.|.+.++|..--+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~ 133 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYE 133 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHH
Confidence 77899999999999999999998765 7889999997432 45568999999999988765
No 191
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.19 E-value=4.7 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=16.7
Q ss_pred cEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
-|+||+-+.. .|+.++ +++..+.|+++.|+.|
T Consensus 41 ~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3889987665 566666 6788999999999764
No 192
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.98 E-value=6.9 Score=32.70 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=22.8
Q ss_pred EEEEEcCHHHHHHHHhcCceeCCcEEEEeec
Q 027167 14 GFITFASADSVENLMVDTHELGGSTVVVDRA 44 (227)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~ 44 (227)
|||.|++..+|..|+...+....+.+.++.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeC
Confidence 7999999999999996444444455566544
No 193
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.19 E-value=26 Score=28.82 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCH
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEE 153 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~ 153 (227)
..-|+|+|||-++.-.||+..+.+.+ ...++.+.- +.+-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 45599999999999999999998877 334555522 467899999874
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=69.37 E-value=7.6 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=20.7
Q ss_pred EEEEcCHHHHHHHH--hcCceeCCcEEEE
Q 027167 15 FITFASADSVENLM--VDTHELGGSTVVV 41 (227)
Q Consensus 15 FV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (227)
||.|.+..+|+++. +++..+..-.|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 89999999999999 4566666555543
No 195
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.38 E-value=16 Score=22.68 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=15.5
Q ss_pred HHHHHHHhccCCEeEEEee
Q 027167 116 EDLRRYFSRFGRILDVYVP 134 (227)
Q Consensus 116 ~~l~~~F~~~G~i~~i~~~ 134 (227)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999866553
No 196
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.90 E-value=14 Score=31.78 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=46.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 164 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~ 164 (227)
-.+.|=|-++|....-+||...|..|+ .--+|+++-| ..+|..|.+...|..||--.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccC
Confidence 356788899999988899999999887 4456777765 379999999999999985443
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=65.63 E-value=7.6 Score=32.63 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=27.8
Q ss_pred EEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 15 FITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 15 FV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
||.|.+.|||.+|| -++..++||.|+..+.+.
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 99999999999999 468899999998876543
No 198
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=62.58 E-value=13 Score=35.82 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=14.1
Q ss_pred CCCCCcccEEEEEEcCHHHHHHH
Q 027167 5 QGSKAHRGIGFITFASADSVENL 27 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~A 27 (227)
+.+|+.++|+-=.|++......+
T Consensus 896 rl~g~q~~~~g~kfsdhva~~~v 918 (1282)
T KOG0921|consen 896 RLSGTQRKFAGNKFSDHVAIVSV 918 (1282)
T ss_pred ccccchhhccccccccchhhhhh
Confidence 45567777777777775544333
No 199
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=61.94 E-value=11 Score=31.89 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=30.1
Q ss_pred CCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEE
Q 027167 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVV 41 (227)
Q Consensus 4 d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v 41 (227)
++..|+|||||.|...+.....+-| +-..+|.|+.-.|
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 5778999999999999988888877 4466787765444
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.93 E-value=24 Score=29.20 Aligned_cols=77 Identities=10% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCC-------CCCcccEEEEEecCHHHHHHH----HhcCC----c
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK-------RTGHRGFGFVTFAEEVVADRV----SRRSH----E 165 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~-------~~~~~g~afV~f~~~~~a~~a----l~~~~----~ 165 (227)
+..|...|+..+++-......|-+||.|++|.++.+.. ..+...-..+.|-+.+.+..- ++++. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45677889998888888888999999999999998751 112345678888888776553 33332 6
Q ss_pred cCCeEEEEEecC
Q 027167 166 ICGQQVAIDSAT 177 (227)
Q Consensus 166 ~~g~~l~V~~a~ 177 (227)
+....|.++|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667778887654
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=61.67 E-value=38 Score=21.33 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEE
Q 027167 112 EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 172 (227)
Q Consensus 112 ~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~ 172 (227)
.++-++++..+..|.- .+|..| .+ | =||.|.+..+|++|.. +...+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4677899999999962 334344 22 2 4999999999999985 33355554443
No 202
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.47 E-value=23 Score=28.99 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHHhccCCEeEEEee
Q 027167 100 IGKKIFVGRLPQE------------ATAEDLRRYFSRFGRILDVYVP 134 (227)
Q Consensus 100 ~~~~l~V~nLp~~------------~t~~~l~~~F~~~G~i~~i~~~ 134 (227)
...|||+.+||-. .+++-|+..|..||.|..+.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3467888887732 3567899999999999887765
No 203
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=60.59 E-value=24 Score=32.78 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
.+.+-||||.|-+..||++|+ +++..+.+.++++-|.
T Consensus 216 ~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 216 RRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred ccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 456679999999999999999 6888999999988887
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.80 E-value=15 Score=30.52 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=39.0
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEE-EeecCCCCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVV-VDRATPKEDDFR 52 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~-v~~~~~~~~~~~ 52 (227)
|.+..+...-.+-+|.|.+..+|++|| .++..|+|..+. |+.+..+.....
T Consensus 223 Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksvi~~ 275 (350)
T KOG4285|consen 223 VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSVING 275 (350)
T ss_pred eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHHhcc
Confidence 345566666669999999999999999 788899887754 777776655443
No 205
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=59.28 E-value=13 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.428 Sum_probs=18.3
Q ss_pred EEEEEEcCHHHHHHHHh----c---CceeCCcEEEEee
Q 027167 13 IGFITFASADSVENLMV----D---THELGGSTVVVDR 43 (227)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~----~---~~~~~gr~i~v~~ 43 (227)
-|||.|.+++.|+.|+. . ...+.+..+.+..
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 68999999999999992 2 3355666655543
No 206
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.44 E-value=11 Score=31.53 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=26.0
Q ss_pred EEEEecCHHHHHHHHhcCCccCCeEEEEEecCCC
Q 027167 146 GFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 179 (227)
Q Consensus 146 afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~~ 179 (227)
|||+|++..+|+.|++.......+.+++..|.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCc
Confidence 7999999999999988655555566677766543
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.36 E-value=25 Score=23.57 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEecCHHHHHHHHhcC-C--ccCCeEEEEE
Q 027167 146 GFVTFAEEVVADRVSRRS-H--EICGQQVAID 174 (227)
Q Consensus 146 afV~f~~~~~a~~al~~~-~--~~~g~~l~V~ 174 (227)
|+|+|.+...|+..+... + .+.+..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 689999999999998744 3 6666655554
No 208
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.14 E-value=17 Score=25.66 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=27.7
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecC-HHHHHHH
Q 027167 103 KIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRV 159 (227)
Q Consensus 103 ~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~-~~~a~~a 159 (227)
++.|.|++... +.+.|++.|..|..+. ++.+.+.. -+.++++|.|.. ..--..|
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A 73 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNA 73 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHH
Confidence 56667775433 4578999999998765 44444322 368999999985 3434444
No 209
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=3.5 Score=35.82 Aligned_cols=75 Identities=5% Similarity=-0.185 Sum_probs=54.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~ 177 (227)
.+.|+..+|...+++++.-+|+.||.|..+.+.+-...+...-.+||+..+ +++..+|. +.+.+.+..++|+.+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999888776654555566678887654 45666664 3446667666666543
No 210
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.06 E-value=34 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=27.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 128 (227)
.....++|+-|+|..+|++.|.++.++.|.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhh
Confidence 3457899999999999999999999998844
No 211
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.09 E-value=43 Score=25.71 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=45.8
Q ss_pred eEEEcCCCCCC--CH---HHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCe-EEEEE
Q 027167 103 KIFVGRLPQEA--TA---EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVAID 174 (227)
Q Consensus 103 ~l~V~nLp~~~--t~---~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~-~l~V~ 174 (227)
++.+-+++..+ +. .....+|.+|-+..-.++++ +.+..-|.|.+++.|..|....+ .|.|+ .+..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45555665543 22 23346666665554445544 34456778999999999976655 77777 77777
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
++.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 777654
No 212
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.40 E-value=37 Score=18.57 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhccC
Q 027167 111 QEATAEDLRRYFSRFG 126 (227)
Q Consensus 111 ~~~t~~~l~~~F~~~G 126 (227)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998754
No 213
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=32.12 E-value=32 Score=20.77 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCcccEEEEEEcCHHHHHHHH---hcCceeCCcEEEEeecC
Q 027167 8 KAHRGIGFITFASADSVENLM---VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai---~~~~~~~gr~i~v~~~~ 45 (227)
..++|||||.-.+ ..-+-.| .-+.-++|-.+.|....
T Consensus 5 ~~~~GfGFv~~~~-~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 5 IHPKGFGFVIPDD-GGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp E-SSS-EEEEECT--TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred EEcCCCEEEEECC-CCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 3578999999887 1111111 11334566666665443
No 214
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.10 E-value=1.5e+02 Score=19.58 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
.-|+--.+..++..++++.++. |+ .|.+|....-+. ...-|||.+..-..|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 4455567899999999999975 56 566666554421 3346999998877776654
No 215
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.78 E-value=1.1e+02 Score=20.37 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEec
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~ 151 (227)
...-|||++++..+.+.--..+.+..+.-.-+.+.++.. ..||+|-+..
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n---eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN---EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC---CCCEEEEEeC
Confidence 355799999999988775556666555555455555422 6789988874
No 216
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.70 E-value=1.5e+02 Score=19.27 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
.-|+-..+...+..+|+..++. |+ .+.+|..+.-+. ...-|||++..-..|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 4566668999999999998865 56 566665544321 334699999876666554
No 217
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.41 E-value=65 Score=21.14 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=19.8
Q ss_pred CcccEEEEEEcCHHHHHHHHhc
Q 027167 9 AHRGIGFITFASADSVENLMVD 30 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~ 30 (227)
.-+||-|||=.+.+++..|+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHhc
Confidence 4789999999999999999954
No 218
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=30.43 E-value=66 Score=24.75 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=23.9
Q ss_pred EEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeecCC
Q 027167 13 IGFITFASADSVENLMV--D--THELGGSTVVVDRATP 46 (227)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~--~--~~~~~gr~i~v~~~~~ 46 (227)
=..|.|.+.++|..|.. . +..+.|..++|.++.+
T Consensus 33 Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 33 RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 46789999999999993 4 6689999999988743
No 219
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=29.27 E-value=69 Score=29.32 Aligned_cols=36 Identities=6% Similarity=0.222 Sum_probs=26.8
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCcee---CCcEEEEeecCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHEL---GGSTVVVDRATP 46 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~---~gr~i~v~~~~~ 46 (227)
|-.|||.|.+.++|..-+ +++..+ +.+.|.+.|...
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 457999999999999877 455543 457788777654
No 220
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=27.50 E-value=34 Score=24.13 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHh---ccCCEeEEEeecCCCCCCcccEEEEEecCH
Q 027167 109 LPQEATAEDLRRYFS---RFGRILDVYVPKDPKRTGHRGFGFVTFAEE 153 (227)
Q Consensus 109 Lp~~~t~~~l~~~F~---~~G~i~~i~~~~d~~~~~~~g~afV~f~~~ 153 (227)
-|..+|..+|+++|. .|-.|+.-.+.+|....-+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 467889999999997 445566556667654444667899998755
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=1.1e+02 Score=27.89 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCEeEEEeecCC----------CCCC---------------------
Q 027167 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRF----GRILDVYVPKDP----------KRTG--------------------- 141 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~i~~~~d~----------~~~~--------------------- 141 (227)
...+++|-|-||.|. +...||.-+|..| |.|.+|.|.+.. ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556889999999996 7889999999876 588888876420 1111
Q ss_pred ----------------cccEEEEEecCHHHHHHHHhc--CCcc--CCeEEEEEecC
Q 027167 142 ----------------HRGFGFVTFAEEVVADRVSRR--SHEI--CGQQVAIDSAT 177 (227)
Q Consensus 142 ----------------~~g~afV~f~~~~~a~~al~~--~~~~--~g~~l~V~~a~ 177 (227)
..-||.|+|.+.+.|.++-.. +.++ .+..|.++|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 125799999999999888753 3344 35567777653
No 222
>PRK15464 cold shock-like protein CspH; Provisional
Probab=26.43 E-value=34 Score=21.77 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.7
Q ss_pred CcccEEEEEEcC
Q 027167 9 AHRGIGFITFAS 20 (227)
Q Consensus 9 ~srG~aFV~F~~ 20 (227)
..||||||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999996443
No 223
>PRK14998 cold shock-like protein CspD; Provisional
Probab=25.89 E-value=40 Score=21.60 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.3
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||.=.
T Consensus 11 ~~kGfGFI~~~ 21 (73)
T PRK14998 11 NAKGFGFICPE 21 (73)
T ss_pred CCCceEEEecC
Confidence 46899999643
No 224
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=25.16 E-value=43 Score=21.56 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=7.9
Q ss_pred CcccEEEEEE
Q 027167 9 AHRGIGFITF 18 (227)
Q Consensus 9 ~srG~aFV~F 18 (227)
..||||||.=
T Consensus 11 ~~KGfGFI~~ 20 (74)
T PRK09937 11 NAKGFGFICP 20 (74)
T ss_pred CCCCeEEEee
Confidence 4689999953
No 225
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=24.23 E-value=41 Score=19.78 Aligned_cols=12 Identities=17% Similarity=-0.429 Sum_probs=7.3
Q ss_pred CCCCCCCccccc
Q 027167 214 DFDDVGACSSIL 225 (227)
Q Consensus 214 ~~~~~~~~~~~~ 225 (227)
+.+++|+|+++|
T Consensus 22 sr~wGy~PsG~l 33 (49)
T PF11752_consen 22 SRGWGYGPSGGL 33 (49)
T ss_pred CCCCCcCCccHH
Confidence 444677777653
No 226
>PRK15463 cold shock-like protein CspF; Provisional
Probab=24.21 E-value=41 Score=21.34 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=8.2
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK15463 14 GKSGKGLITPS 24 (70)
T ss_pred CCCceEEEecC
Confidence 45899999643
No 227
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=23.99 E-value=1.6e+02 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.3
Q ss_pred EEecCHHHHHHHHhcCCccCCeEEEEEecCCCCCCC
Q 027167 148 VTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 148 V~f~~~~~a~~al~~~~~~~g~~l~V~~a~~~~~~~ 183 (227)
+.|++.++|..|+.+...-.|..|.|+|.-|+-.++
T Consensus 452 ~VFdsee~a~~ai~~g~I~~gdVvVIRyeGPkGgPG 487 (615)
T PRK12448 452 RVFESQDDAVEAILGGKVKAGDVVVIRYEGPKGGPG 487 (615)
T ss_pred EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCcC
Confidence 578999999999998777778999999988876443
No 228
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=23.62 E-value=44 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=22.0
Q ss_pred EEEEcCHHHHHHHH----hcCceeCCcEEEE
Q 027167 15 FITFASADSVENLM----VDTHELGGSTVVV 41 (227)
Q Consensus 15 FV~F~~~~~A~~Ai----~~~~~~~gr~i~v 41 (227)
||.|++..||+.|. +...+|-|++|..
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 89999999999997 3456888888743
No 229
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=23.53 E-value=1.7e+02 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=32.4
Q ss_pred cccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCCCCCCC
Q 027167 142 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 142 ~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~~~~~~ 183 (227)
.+|-| +.|++.++|..|+.+...-.|..|.|+|.-|+-.++
T Consensus 382 ~~G~A-~VF~see~a~~ai~~g~i~~gdVvViRyeGPkGgPG 422 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAILGGKIKEGDVVVIRYEGPKGGPG 422 (535)
T ss_pred EEEeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCC
Confidence 34444 568999999999998877788899999988875433
No 230
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=23.37 E-value=42 Score=21.18 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.3
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||+=.
T Consensus 13 ~~kGyGFI~~~ 23 (69)
T PRK09507 13 ESKGFGFITPE 23 (69)
T ss_pred CCCCcEEEecC
Confidence 46899999643
No 231
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=23.20 E-value=49 Score=20.74 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=9.2
Q ss_pred CcccEEEEEEcC
Q 027167 9 AHRGIGFITFAS 20 (227)
Q Consensus 9 ~srG~aFV~F~~ 20 (227)
..||||||.=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999997554
No 232
>PRK10943 cold shock-like protein CspC; Provisional
Probab=23.14 E-value=42 Score=21.19 Aligned_cols=11 Identities=55% Similarity=0.872 Sum_probs=8.3
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||+=.
T Consensus 13 ~~kGfGFI~~~ 23 (69)
T PRK10943 13 ESKGFGFITPA 23 (69)
T ss_pred CCCCcEEEecC
Confidence 46899999643
No 233
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.81 E-value=1.7e+02 Score=20.02 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 152 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~ 152 (227)
..-|||++++..+.+.--..+-+.++.-.-+.+..+. . ..||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~--~-eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN--T-ESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC--C-CCCcEEEecCC
Confidence 5579999998887765444444545444444455542 2 34899888764
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.38 E-value=17 Score=32.67 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEec---CHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA---EEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~---~~~~a~~al~ 161 (227)
.++||++|++++++-.+|..++..+--+..+.+..+........+..|+|. +...|.-||.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 567999999999999999999998865555544333221223345667775 4556666654
No 235
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=22.14 E-value=1.8e+02 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=31.7
Q ss_pred ccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCCCCCCC
Q 027167 143 RGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 143 ~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~~~~~~ 183 (227)
+|-| +.|++.++|.+||.+...-.|..|.+++.-|+-.++
T Consensus 398 ~GpA-~VF~see~a~~ai~~g~I~~gdVvViRyeGPkGgPG 437 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAILAGKIKAGDVVVIRYEGPKGGPG 437 (552)
T ss_pred eeeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCC
Confidence 3434 568999999999998777778899999988876443
No 236
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=21.40 E-value=48 Score=20.92 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=7.7
Q ss_pred CcccEEEEEE
Q 027167 9 AHRGIGFITF 18 (227)
Q Consensus 9 ~srG~aFV~F 18 (227)
..||||||+=
T Consensus 14 ~~kGfGFI~~ 23 (70)
T PRK10354 14 ADKGFGFITP 23 (70)
T ss_pred CCCCcEEEec
Confidence 3589999973
No 237
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.19 E-value=45 Score=28.88 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhc--cCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAE--------DLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~--------~l~~~F~~--~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
...+|+.+++.....+ ++...|.. .+.+..|+..++......+|-.|++|.....+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567888887766555 89999988 5677788888875556678889999999999999884
No 238
>PRK09890 cold shock protein CspG; Provisional
Probab=20.82 E-value=51 Score=20.86 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.2
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK09890 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 45899999643
Done!