Query 027167
Match_columns 227
No_of_seqs 149 out of 1804
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.1E-29 7.2E-34 194.9 16.0 142 1-184 45-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 1.2E-28 4.1E-33 186.0 9.3 132 1-180 35-167 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 1.1E-26 3.7E-31 175.3 15.3 128 1-176 35-168 (168)
4 3md3_A Nuclear and cytoplasmic 99.9 2.9E-26 1E-30 172.3 16.3 130 2-178 33-166 (166)
5 1fje_B Nucleolin RBD12, protei 99.9 1E-26 3.6E-31 176.8 13.5 129 1-180 44-175 (175)
6 2yh0_A Splicing factor U2AF 65 99.9 2.7E-26 9.3E-31 177.6 16.0 151 4-182 44-197 (198)
7 2qfj_A FBP-interacting repress 99.9 2.1E-26 7.3E-31 180.6 15.6 147 1-184 60-210 (216)
8 1fxl_A Paraneoplastic encephal 99.9 2.3E-26 7.8E-31 173.1 14.3 128 1-176 34-167 (167)
9 4f02_A Polyadenylate-binding p 99.9 6.4E-27 2.2E-31 183.9 11.7 134 1-182 47-184 (213)
10 2g4b_A Splicing factor U2AF 65 99.9 3.2E-26 1.1E-30 173.4 12.7 125 5-177 45-172 (172)
11 2ghp_A U4/U6 snRNA-associated 99.9 6.9E-25 2.3E-29 179.9 15.9 137 1-180 150-292 (292)
12 2kn4_A Immunoglobulin G-bindin 99.9 7.9E-25 2.7E-29 164.1 14.7 85 99-183 68-154 (158)
13 3smz_A Protein raver-1, ribonu 99.9 7.1E-25 2.4E-29 179.1 14.3 136 1-182 127-267 (284)
14 3nmr_A Cugbp ELAV-like family 99.9 2E-24 6.8E-29 163.8 11.9 128 2-177 36-175 (175)
15 3pgw_A U1-A; protein-RNA compl 99.9 4.9E-23 1.7E-27 168.0 17.7 75 98-177 204-281 (282)
16 2adc_A Polypyrimidine tract-bi 99.9 1.1E-22 3.8E-27 161.3 15.9 151 11-179 72-228 (229)
17 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-22 3.8E-27 157.6 14.1 151 11-179 41-197 (198)
18 3tyt_A Heterogeneous nuclear r 99.9 3.8E-23 1.3E-27 161.4 11.3 154 10-176 41-204 (205)
19 3smz_A Protein raver-1, ribonu 99.9 2.5E-22 8.6E-27 164.0 15.5 120 8-181 54-177 (284)
20 2i2y_A Fusion protein consists 99.9 8.9E-23 3E-27 151.6 11.6 136 7-180 9-149 (150)
21 3sde_A Paraspeckle component 1 99.9 4.1E-22 1.4E-26 161.1 13.0 120 8-182 55-182 (261)
22 2ghp_A U4/U6 snRNA-associated 99.9 5.1E-22 1.8E-26 162.7 13.0 118 10-183 80-201 (292)
23 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-21 1.1E-25 133.1 10.6 81 98-178 16-98 (99)
24 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.1E-21 2.1E-25 142.6 12.5 86 98-183 36-123 (156)
25 2lxi_A RNA-binding protein 10; 99.8 2.2E-21 7.6E-26 132.0 8.4 83 101-183 1-87 (91)
26 2cqg_A TDP-43, TAR DNA-binding 99.8 5.7E-20 2E-24 127.7 13.9 87 98-184 12-98 (103)
27 2cqd_A RNA-binding region cont 99.8 2.4E-19 8E-24 127.3 16.0 87 98-184 14-101 (116)
28 2dgs_A DAZ-associated protein 99.8 1E-19 3.4E-24 125.6 13.2 87 98-184 7-94 (99)
29 1whw_A Hypothetical protein ri 99.8 1.5E-19 5.2E-24 124.7 13.2 87 98-184 5-93 (99)
30 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5E-24 126.1 13.0 87 98-184 12-100 (105)
31 2dnz_A Probable RNA-binding pr 99.8 1.1E-19 3.6E-24 124.4 12.0 86 99-184 3-90 (95)
32 2cq0_A Eukaryotic translation 99.8 1.1E-19 3.6E-24 126.4 12.0 87 98-184 12-100 (103)
33 2lea_A Serine/arginine-rich sp 99.8 1.9E-20 6.6E-25 136.6 8.4 86 99-184 45-132 (135)
34 1x5t_A Splicing factor 3B subu 99.8 8E-20 2.7E-24 125.3 10.9 86 99-184 3-91 (96)
35 2fy1_A RNA-binding motif prote 99.8 1.5E-19 5.1E-24 128.4 12.6 84 99-183 5-90 (116)
36 2dgo_A Cytotoxic granule-assoc 99.8 4.5E-19 1.6E-23 125.6 15.0 87 98-184 12-100 (115)
37 3s8s_A Histone-lysine N-methyl 99.8 1E-19 3.5E-24 128.0 11.0 83 99-181 4-88 (110)
38 1u6f_A Tcubp1, RNA-binding pro 99.8 3E-19 1E-23 130.8 14.0 86 98-183 39-126 (139)
39 2dnm_A SRP46 splicing factor; 99.8 1E-19 3.6E-24 126.4 10.9 87 98-184 10-98 (103)
40 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-19 6E-24 127.8 12.2 87 98-184 22-110 (115)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5E-24 125.4 11.0 87 98-184 9-97 (102)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 3.4E-19 1.2E-23 124.0 12.7 86 98-184 12-99 (104)
43 1x4h_A RNA-binding protein 28; 99.8 5.3E-19 1.8E-23 124.4 13.8 87 98-184 12-106 (111)
44 2do4_A Squamous cell carcinoma 99.8 4.6E-19 1.6E-23 122.4 13.1 84 98-182 14-99 (100)
45 2cph_A RNA binding motif prote 99.8 3.6E-19 1.2E-23 124.5 12.5 87 98-184 12-102 (107)
46 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-19 5.2E-24 125.3 10.5 87 98-184 9-97 (102)
47 2dng_A Eukaryotic translation 99.8 5.5E-19 1.9E-23 122.8 13.0 85 98-183 12-97 (103)
48 3md1_A Nuclear and cytoplasmic 99.8 2.4E-19 8.3E-24 119.5 10.7 79 102-180 2-82 (83)
49 2lkz_A RNA-binding protein 5; 99.8 6.6E-20 2.3E-24 125.4 7.9 80 99-178 7-94 (95)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 6E-24 121.3 9.9 82 99-180 4-87 (87)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 5.3E-19 1.8E-23 123.2 12.3 86 98-184 12-102 (105)
52 2d9p_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 123.3 11.6 85 98-184 12-98 (103)
53 2dgp_A Bruno-like 4, RNA bindi 99.8 3.1E-19 1E-23 124.6 10.8 86 98-183 10-100 (106)
54 2dh8_A DAZ-associated protein 99.8 2.7E-19 9.3E-24 124.7 10.4 87 98-184 13-100 (105)
55 2dhg_A TRNA selenocysteine ass 99.8 3.3E-19 1.1E-23 124.0 10.7 86 98-184 6-95 (104)
56 1x4b_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 125.8 11.6 86 99-184 25-111 (116)
57 2cpf_A RNA binding motif prote 99.8 3.4E-19 1.2E-23 122.7 10.4 86 99-184 3-93 (98)
58 3ex7_B RNA-binding protein 8A; 99.8 2.1E-19 7.2E-24 129.4 9.5 87 98-184 19-107 (126)
59 2rs2_A Musashi-1, RNA-binding 99.8 7.9E-19 2.7E-23 123.3 11.9 85 98-182 22-107 (109)
60 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.1E-19 1.1E-23 134.5 10.2 86 98-183 69-156 (165)
61 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-18 4.4E-23 118.7 12.1 80 98-177 13-94 (94)
62 2cpe_A RNA-binding protein EWS 99.8 7.3E-19 2.5E-23 124.2 11.2 86 98-183 12-107 (113)
63 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-18 9.3E-23 119.2 13.9 85 98-184 12-98 (103)
64 1p27_B RNA-binding protein 8A; 99.8 4.2E-19 1.4E-23 123.9 9.7 84 98-181 20-105 (106)
65 2x1f_A MRNA 3'-END-processing 99.8 8E-19 2.7E-23 120.4 10.8 81 101-181 2-84 (96)
66 1oo0_B CG8781-PA, drosophila Y 99.8 5.7E-19 1.9E-23 124.1 10.3 85 98-182 23-109 (110)
67 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.9E-23 119.2 11.4 81 98-178 12-94 (95)
68 4f25_A Polyadenylate-binding p 99.8 5.5E-19 1.9E-23 125.3 9.8 82 100-183 4-87 (115)
69 3p5t_L Cleavage and polyadenyl 99.8 9.9E-20 3.4E-24 123.5 5.7 82 102-183 2-87 (90)
70 1x4c_A Splicing factor, argini 99.8 5.1E-18 1.7E-22 118.9 14.4 79 98-183 12-97 (108)
71 3s7r_A Heterogeneous nuclear r 99.8 1.8E-18 6.2E-23 116.3 11.6 79 98-176 8-87 (87)
72 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.3E-19 2.8E-23 117.4 9.8 80 98-177 4-85 (85)
73 1x4a_A Splicing factor, argini 99.8 4.6E-18 1.6E-22 119.3 13.9 84 98-184 19-104 (109)
74 2cq3_A RNA-binding protein 9; 99.8 4.6E-18 1.6E-22 118.0 13.7 85 98-184 12-98 (103)
75 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.5E-24 143.5 6.4 80 100-179 67-150 (229)
76 2do0_A HnRNP M, heterogeneous 99.8 7.5E-18 2.6E-22 119.1 14.7 84 98-182 12-97 (114)
77 2dgw_A Probable RNA-binding pr 99.8 3E-18 1E-22 116.2 12.0 82 98-182 7-90 (91)
78 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 120.8 10.0 81 98-184 13-97 (105)
79 2jrs_A RNA-binding protein 39; 99.8 1.3E-18 4.4E-23 122.0 10.3 83 98-180 23-107 (108)
80 2dgx_A KIAA0430 protein; RRM d 99.8 2.6E-18 8.9E-23 117.8 11.3 82 99-183 7-94 (96)
81 2kxn_B Transformer-2 protein h 99.8 1E-18 3.4E-23 126.4 9.5 84 98-181 43-128 (129)
82 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.5E-23 119.9 9.7 83 98-180 6-95 (99)
83 3ucg_A Polyadenylate-binding p 99.8 3.4E-18 1.2E-22 115.4 11.2 79 101-179 6-85 (89)
84 1wez_A HnRNP H', FTP-3, hetero 99.8 1.4E-18 4.8E-23 120.5 9.5 82 98-181 12-94 (102)
85 4a8x_A RNA-binding protein wit 99.8 1.3E-18 4.5E-23 117.2 9.0 82 100-181 3-87 (88)
86 3r27_A HnRNP L, heterogeneous 99.8 3.4E-18 1.1E-22 117.3 11.0 77 98-180 18-98 (100)
87 2la6_A RNA-binding protein FUS 99.8 2.5E-18 8.6E-23 118.5 10.4 80 98-177 10-99 (99)
88 2cq1_A PTB-like protein L; RRM 99.8 8.6E-18 2.9E-22 116.1 13.0 80 98-183 12-95 (101)
89 2dgu_A Heterogeneous nuclear r 99.8 9.3E-18 3.2E-22 116.5 13.2 79 98-184 8-88 (103)
90 2khc_A Testis-specific RNP-typ 99.8 3.7E-18 1.3E-22 121.4 11.4 80 98-177 37-118 (118)
91 3pgw_S U1-70K; protein-RNA com 99.8 8.5E-18 2.9E-22 144.8 15.6 85 99-183 100-186 (437)
92 2m2b_A RNA-binding protein 10; 99.8 1.4E-18 4.9E-23 125.9 8.9 84 98-182 20-111 (131)
93 1x4d_A Matrin 3; structural ge 99.8 3.1E-18 1.1E-22 118.4 10.1 79 99-183 13-96 (102)
94 1wg5_A Heterogeneous nuclear r 99.8 7.8E-18 2.7E-22 117.2 12.1 83 98-181 12-96 (104)
95 2cpi_A CCR4-NOT transcription 99.8 3.8E-18 1.3E-22 120.2 10.6 84 98-181 12-103 (111)
96 2dgv_A HnRNP M, heterogeneous 99.8 3.8E-18 1.3E-22 115.9 10.2 83 98-182 5-89 (92)
97 3ns6_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 123.7 4.4 81 100-180 5-94 (100)
98 2fc9_A NCL protein; structure 99.8 1.1E-17 3.9E-22 115.6 12.5 82 98-183 12-95 (101)
99 2ad9_A Polypyrimidine tract-bi 99.8 3.6E-18 1.2E-22 121.1 10.1 81 98-184 28-112 (119)
100 2ywk_A Putative RNA-binding pr 99.8 3.7E-18 1.3E-22 116.7 9.8 80 98-178 13-94 (95)
101 2dis_A Unnamed protein product 99.8 1.2E-17 4.1E-22 117.0 12.6 85 99-183 6-96 (109)
102 1wex_A Hypothetical protein (r 99.8 1.2E-17 4.1E-22 116.1 12.2 80 98-183 12-95 (104)
103 2jwn_A Embryonic polyadenylate 99.8 5.9E-18 2E-22 121.4 10.9 83 100-182 35-118 (124)
104 1s79_A Lupus LA protein; RRM, 99.8 3.1E-18 1.1E-22 118.9 9.0 79 99-178 9-88 (103)
105 2fc8_A NCL protein; structure 99.8 7.3E-18 2.5E-22 116.8 10.9 83 98-183 12-96 (102)
106 3ulh_A THO complex subunit 4; 99.8 6.1E-18 2.1E-22 118.2 10.5 79 98-177 26-106 (107)
107 2dgt_A RNA-binding protein 30; 99.8 1.3E-17 4.6E-22 113.3 11.8 79 98-184 7-87 (92)
108 2cq4_A RNA binding motif prote 99.8 7.3E-19 2.5E-23 124.4 5.6 83 100-182 24-107 (114)
109 3n9u_C Cleavage and polyadenyl 99.8 3.7E-18 1.3E-22 127.4 9.6 81 100-180 54-138 (156)
110 2cqp_A RNA-binding protein 12; 99.8 3.3E-18 1.1E-22 117.7 8.6 83 98-180 12-96 (98)
111 3d2w_A TAR DNA-binding protein 99.8 5.8E-18 2E-22 114.5 9.7 79 98-181 8-86 (89)
112 1p1t_A Cleavage stimulation fa 99.8 1.2E-18 4E-23 121.2 6.4 84 99-182 6-91 (104)
113 2cpy_A RNA-binding protein 12; 99.8 1.2E-18 4E-23 123.4 6.4 82 98-180 12-95 (114)
114 2mss_A Protein (musashi1); RNA 99.8 2.6E-18 8.9E-23 112.3 7.6 74 103-176 1-75 (75)
115 2kt5_A RNA and export factor-b 99.7 2.2E-17 7.5E-22 118.5 13.0 86 98-184 32-119 (124)
116 2hgn_A Heterogeneous nuclear r 99.7 8E-19 2.7E-23 128.2 5.3 81 99-181 44-125 (139)
117 2dnq_A RNA-binding protein 4B; 99.7 1.3E-17 4.4E-22 112.9 10.9 79 98-184 5-85 (90)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-17 9.5E-22 120.2 13.4 79 98-176 60-140 (140)
119 2cpx_A Hypothetical protein FL 99.7 2.7E-18 9.4E-23 121.5 7.6 87 98-184 22-110 (115)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.5E-18 8.6E-23 118.8 6.8 82 98-180 16-99 (100)
121 1wf0_A TDP-43, TAR DNA-binding 99.7 6.3E-18 2.1E-22 114.0 8.5 80 99-183 3-82 (88)
122 1x4f_A Matrin 3; structural ge 99.7 7.5E-18 2.6E-22 118.2 9.1 80 98-183 22-106 (112)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.7E-18 9.2E-23 112.7 6.3 75 102-176 1-76 (77)
124 2cpd_A Apobec-1 stimulating pr 99.7 5.5E-17 1.9E-21 111.7 13.3 78 98-183 12-93 (99)
125 1why_A Hypothetical protein ri 99.7 2.6E-17 8.8E-22 113.0 11.5 79 98-182 14-96 (97)
126 1x4g_A Nucleolysin TIAR; struc 99.7 2.3E-17 7.9E-22 115.7 11.1 80 99-184 23-104 (109)
127 1iqt_A AUF1, heterogeneous nuc 99.7 3.1E-18 1E-22 111.9 6.1 74 103-176 1-75 (75)
128 1x4e_A RNA binding motif, sing 99.7 2.3E-18 7.8E-23 115.3 5.7 79 99-177 3-83 (85)
129 2lcw_A RNA-binding protein FUS 99.6 1.9E-19 6.5E-24 127.8 0.0 85 99-183 5-99 (116)
130 2err_A Ataxin-2-binding protei 99.7 1.2E-17 4E-22 117.3 9.0 81 98-180 26-108 (109)
131 2hvz_A Splicing factor, argini 99.7 2.5E-17 8.7E-22 113.8 10.6 76 102-182 1-78 (101)
132 2ek1_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 117.0 5.8 80 99-178 13-94 (95)
133 1x5o_A RNA binding motif, sing 99.7 3.9E-17 1.3E-21 115.4 11.6 81 98-179 22-112 (114)
134 2xs2_A Deleted in azoospermia- 99.7 4.9E-18 1.7E-22 117.7 6.7 83 99-182 7-89 (102)
135 2dnn_A RNA-binding protein 12; 99.7 9.5E-18 3.3E-22 117.5 7.9 79 99-179 14-93 (109)
136 2nlw_A Eukaryotic translation 99.7 3.6E-17 1.2E-21 114.0 10.8 82 98-181 12-102 (105)
137 2cpj_A Non-POU domain-containi 99.7 4.1E-17 1.4E-21 112.4 10.7 79 98-182 12-92 (99)
138 2dnp_A RNA-binding protein 14; 99.7 5.3E-17 1.8E-21 109.8 11.0 78 98-183 6-85 (90)
139 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 7.8E-22 115.9 9.3 79 99-181 26-107 (111)
140 2ki2_A SS-DNA binding protein 99.7 2.7E-18 9.1E-23 116.3 4.3 80 102-182 2-83 (90)
141 2hgl_A HNRPF protein, heteroge 99.7 8.7E-18 3E-22 122.3 7.2 82 98-180 41-126 (136)
142 1fj7_A Nucleolin RBD1, protein 99.7 4.3E-18 1.5E-22 117.8 5.1 83 99-182 15-98 (101)
143 2a3j_A U1 small nuclear ribonu 99.7 4.4E-17 1.5E-21 117.2 10.3 81 98-181 26-112 (127)
144 1wf1_A RNA-binding protein RAL 99.7 1E-16 3.4E-21 112.6 11.6 78 98-183 24-104 (110)
145 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 118.7 7.0 82 98-180 14-99 (118)
146 2wbr_A GW182, gawky, LD47780P; 99.7 5.5E-17 1.9E-21 107.7 9.4 72 100-177 6-79 (89)
147 2jvo_A Nucleolar protein 3; nu 99.7 5.4E-17 1.8E-21 113.7 9.3 77 98-182 28-106 (108)
148 2ytc_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.8E-21 106.5 10.9 74 98-177 9-85 (85)
149 1wel_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 119.3 6.3 83 98-180 22-105 (124)
150 2dnl_A Cytoplasmic polyadenyla 99.7 5.3E-17 1.8E-21 114.8 9.0 81 99-180 6-89 (114)
151 2e5j_A Methenyltetrahydrofolat 99.7 8.7E-17 3E-21 110.3 9.7 79 98-181 16-96 (97)
152 2hgm_A HNRPF protein, heteroge 99.7 1.8E-17 6.3E-22 118.8 6.5 81 98-180 39-122 (126)
153 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.1E-21 107.5 11.5 80 99-183 6-86 (94)
154 2kvi_A Nuclear polyadenylated 99.7 2.5E-17 8.7E-22 112.8 6.5 79 98-184 7-88 (96)
155 1x5p_A Negative elongation fac 99.7 6.5E-16 2.2E-20 105.9 13.4 79 98-184 12-92 (97)
156 2cqh_A IGF-II mRNA-binding pro 99.7 9.8E-17 3.4E-21 109.2 9.1 78 99-183 6-87 (93)
157 1fjc_A Nucleolin RBD2, protein 99.7 8E-17 2.7E-21 110.2 8.5 80 98-182 13-94 (96)
158 2dha_A FLJ20171 protein; RRM d 99.7 1.8E-17 6E-22 118.6 5.4 80 100-180 22-106 (123)
159 2xnq_A Nuclear polyadenylated 99.7 2.2E-16 7.6E-21 108.3 10.7 75 98-180 19-96 (97)
160 3beg_B Splicing factor, argini 99.7 5.8E-17 2E-21 114.8 7.9 76 99-181 14-96 (115)
161 2krb_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 107.9 6.7 71 101-173 1-80 (81)
162 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-17 5.6E-22 116.1 4.7 82 98-180 8-93 (107)
163 4f02_A Polyadenylate-binding p 99.7 1.7E-16 5.7E-21 124.3 10.9 82 99-180 13-96 (213)
164 2la4_A Nuclear and cytoplasmic 99.7 7.8E-17 2.7E-21 111.3 7.9 75 99-179 25-101 (101)
165 1nu4_A U1A RNA binding domain; 99.7 7E-17 2.4E-21 110.7 7.6 81 98-181 5-91 (97)
166 2e44_A Insulin-like growth fac 99.7 1.6E-16 5.4E-21 108.7 9.2 79 99-181 13-94 (96)
167 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-16 5.5E-21 112.4 9.1 81 98-181 5-87 (115)
168 2f3j_A RNA and export factor b 99.7 3.7E-16 1.3E-20 118.9 11.0 83 97-180 84-168 (177)
169 1l3k_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 120.1 11.0 85 98-182 10-95 (196)
170 2cq2_A Hypothetical protein LO 99.7 3.4E-16 1.2E-20 109.9 9.6 81 99-185 23-112 (114)
171 2cjk_A Nuclear polyadenylated 99.7 1.7E-16 6E-21 119.0 8.7 81 100-180 2-82 (167)
172 1fxl_A Paraneoplastic encephal 99.7 5.8E-16 2E-20 115.8 11.0 81 101-181 2-84 (167)
173 1b7f_A Protein (SXL-lethal pro 99.7 5.2E-16 1.8E-20 116.4 10.1 83 100-182 2-86 (168)
174 1whx_A Hypothetical protein ri 99.6 1.8E-16 6.2E-21 111.5 6.5 75 100-180 9-85 (111)
175 2j8a_A Histone-lysine N-methyl 99.6 3.8E-16 1.3E-20 110.6 7.8 76 102-177 3-94 (136)
176 3egn_A RNA-binding protein 40; 99.6 1.2E-16 3.9E-21 117.5 4.8 82 98-182 42-133 (143)
177 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 4.2E-20 113.5 10.2 77 100-180 45-125 (164)
178 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.4E-20 109.3 9.7 77 100-181 27-108 (130)
179 2diu_A KIAA0430 protein; struc 99.6 1.9E-15 6.5E-20 101.3 8.7 73 99-181 6-86 (96)
180 1wg1_A KIAA1579 protein, homol 99.6 1.2E-15 4.2E-20 102.6 7.8 74 100-180 4-79 (88)
181 2e5i_A Heterogeneous nuclear r 99.6 8.3E-15 2.8E-19 104.6 12.1 73 102-180 26-103 (124)
182 3tyt_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 116.3 10.1 76 100-180 3-81 (205)
183 2voo_A Lupus LA protein; RNA-b 99.6 6.1E-15 2.1E-19 113.7 11.0 78 101-179 109-187 (193)
184 3md3_A Nuclear and cytoplasmic 99.6 5.4E-15 1.8E-19 110.4 10.2 79 102-181 1-81 (166)
185 2qfj_A FBP-interacting repress 99.6 5.2E-15 1.8E-19 115.4 9.6 80 101-180 28-109 (216)
186 2bz2_A Negative elongation fac 99.6 6E-15 2.1E-19 105.3 8.3 77 99-183 37-115 (121)
187 2pe8_A Splicing factor 45; RRM 99.6 1.2E-14 4.1E-19 101.0 9.3 80 99-178 6-93 (105)
188 2hzc_A Splicing factor U2AF 65 99.6 1.3E-14 4.6E-19 97.1 8.8 70 99-175 4-86 (87)
189 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.3E-13 4.4E-18 94.8 12.6 78 101-183 10-94 (100)
190 3nmr_A Cugbp ELAV-like family 99.5 1.6E-14 5.3E-19 108.9 8.3 81 101-181 3-90 (175)
191 3pgw_A U1-A; protein-RNA compl 99.5 4.2E-14 1.4E-18 114.9 10.8 80 98-180 6-91 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.5 1.5E-14 5.2E-19 114.4 7.8 79 98-182 131-232 (240)
193 2dit_A HIV TAT specific factor 99.5 2.1E-13 7.2E-18 95.9 12.1 82 98-183 12-106 (112)
194 2adc_A Polypyrimidine tract-bi 99.5 5.1E-14 1.7E-18 111.3 9.3 78 98-180 31-111 (229)
195 1qm9_A Polypyrimidine tract-bi 99.5 9.4E-14 3.2E-18 107.0 10.0 75 101-180 3-80 (198)
196 1fje_B Nucleolin RBD12, protei 99.5 2.2E-14 7.4E-19 108.4 4.4 84 98-182 10-94 (175)
197 3sde_A Paraspeckle component 1 99.4 4.2E-13 1.4E-17 108.1 10.1 75 98-178 19-95 (261)
198 3v4m_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 92.6 8.4 80 99-178 3-96 (105)
199 2yh0_A Splicing factor U2AF 65 99.4 2.4E-12 8.2E-17 98.9 12.3 76 100-181 3-90 (198)
200 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 98.3 10.1 76 100-181 3-90 (172)
201 4f25_A Polyadenylate-binding p 99.4 2E-13 6.7E-18 96.5 4.2 42 8-49 42-85 (115)
202 1jmt_A Splicing factor U2AF 35 99.4 2.4E-13 8.2E-18 94.3 3.9 70 106-176 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.4 1.4E-12 4.8E-17 92.3 7.5 79 100-178 19-108 (118)
204 3tht_A Alkylated DNA repair pr 99.3 9.6E-12 3.3E-16 103.3 9.6 74 98-177 15-97 (345)
205 2lxi_A RNA-binding protein 10; 99.2 1.6E-11 5.4E-16 82.9 6.6 50 1-50 34-86 (91)
206 3s6e_A RNA-binding protein 39; 99.2 7.3E-11 2.5E-15 82.9 8.8 76 99-178 5-92 (114)
207 4fxv_A ELAV-like protein 1; RN 99.2 1.4E-11 4.7E-16 84.6 4.6 46 1-46 51-98 (99)
208 2lkz_A RNA-binding protein 5; 99.2 2.5E-11 8.6E-16 82.5 5.6 46 1-46 43-94 (95)
209 1owx_A Lupus LA protein, SS-B, 99.1 3.5E-10 1.2E-14 79.7 8.8 74 97-176 14-93 (121)
210 2cqg_A TDP-43, TAR DNA-binding 99.1 1.4E-10 4.9E-15 79.8 6.5 52 1-52 47-98 (103)
211 3p5t_L Cleavage and polyadenyl 99.1 2.8E-11 9.4E-16 81.4 2.6 49 1-49 35-85 (90)
212 3s8s_A Histone-lysine N-methyl 99.1 8.2E-11 2.8E-15 82.2 5.0 47 1-47 38-86 (110)
213 2dnr_A Synaptojanin-1; RRM dom 99.1 4.9E-10 1.7E-14 74.4 8.4 74 98-179 4-86 (91)
214 2fc8_A NCL protein; structure 99.1 1.6E-10 5.5E-15 79.4 5.9 50 1-50 44-95 (102)
215 2dgs_A DAZ-associated protein 99.1 2.1E-10 7.2E-15 78.4 6.5 50 1-50 42-92 (99)
216 1x5t_A Splicing factor 3B subu 99.1 2.7E-10 9.3E-15 77.3 6.6 50 1-50 38-89 (96)
217 2dng_A Eukaryotic translation 99.1 2.1E-10 7E-15 79.0 6.0 50 1-50 46-96 (103)
218 3md1_A Nuclear and cytoplasmic 99.1 1.9E-10 6.4E-15 75.9 5.4 48 1-48 33-82 (83)
219 1wi8_A EIF-4B, eukaryotic tran 99.1 4.2E-10 1.4E-14 77.6 7.2 51 1-51 46-98 (104)
220 2cqb_A Peptidyl-prolyl CIS-tra 99.1 3.8E-10 1.3E-14 77.4 6.9 50 1-50 44-95 (102)
221 1whw_A Hypothetical protein ri 99.0 5.9E-10 2E-14 76.1 7.6 50 1-50 40-91 (99)
222 2cpe_A RNA-binding protein EWS 99.0 4.9E-10 1.7E-14 78.4 7.1 50 1-50 55-106 (113)
223 1x4h_A RNA-binding protein 28; 99.0 5.9E-10 2E-14 77.7 7.5 51 1-51 47-105 (111)
224 3ns6_A Eukaryotic translation 99.0 8.8E-11 3E-15 80.6 3.1 47 1-47 44-93 (100)
225 1x5u_A Splicing factor 3B subu 99.0 4.5E-10 1.5E-14 77.5 6.3 50 1-50 47-98 (105)
226 2x1f_A MRNA 3'-END-processing 99.0 5.4E-10 1.8E-14 75.9 6.4 49 1-49 34-84 (96)
227 2dnz_A Probable RNA-binding pr 99.0 4.1E-10 1.4E-14 76.2 5.8 49 1-49 37-87 (95)
228 2dnm_A SRP46 splicing factor; 99.0 3.7E-10 1.3E-14 77.7 5.6 49 1-49 45-95 (103)
229 3bs9_A Nucleolysin TIA-1 isofo 99.0 2.7E-10 9.3E-15 75.8 4.7 47 1-47 38-86 (87)
230 2mss_A Protein (musashi1); RNA 99.0 2.9E-10 1E-14 73.5 4.4 44 1-44 31-75 (75)
231 1x4b_A Heterogeneous nuclear r 99.0 5.8E-10 2E-14 78.5 6.2 51 1-51 59-110 (116)
232 2cq0_A Eukaryotic translation 99.0 5.3E-10 1.8E-14 76.9 5.8 49 1-49 47-97 (103)
233 2rs2_A Musashi-1, RNA-binding 99.0 6.7E-10 2.3E-14 77.4 6.3 49 1-49 57-106 (109)
234 2cpz_A CUG triplet repeat RNA- 99.0 5E-10 1.7E-14 78.6 5.7 50 1-50 57-108 (115)
235 2dhg_A TRNA selenocysteine ass 99.0 3.5E-10 1.2E-14 77.9 4.6 51 1-52 42-95 (104)
236 2dgo_A Cytotoxic granule-assoc 99.0 1.1E-09 3.9E-14 76.8 7.2 50 1-50 47-98 (115)
237 1x5s_A Cold-inducible RNA-bind 99.0 4.8E-10 1.6E-14 76.9 5.1 49 1-49 44-94 (102)
238 1fj7_A Nucleolin RBD1, protein 99.0 2.9E-10 1E-14 77.9 3.8 49 1-49 48-97 (101)
239 2dh8_A DAZ-associated protein 99.0 4.6E-10 1.6E-14 77.5 4.7 50 1-50 48-98 (105)
240 1wez_A HnRNP H', FTP-3, hetero 99.0 4.3E-10 1.5E-14 77.4 4.3 48 1-49 46-94 (102)
241 1u6f_A Tcubp1, RNA-binding pro 99.0 1E-09 3.4E-14 79.7 6.3 50 1-50 74-125 (139)
242 2cph_A RNA binding motif prote 99.0 1.6E-09 5.4E-14 75.0 6.9 50 1-50 47-100 (107)
243 2m2b_A RNA-binding protein 10; 99.0 5E-10 1.7E-14 80.6 4.4 49 1-50 57-111 (131)
244 1oo0_B CG8781-PA, drosophila Y 99.0 9.5E-10 3.2E-14 76.5 5.7 48 1-48 58-107 (110)
245 2j76_E EIF-4B, EIF4B, eukaryot 98.9 6.2E-10 2.1E-14 76.3 4.6 48 1-48 50-99 (100)
246 2dgp_A Bruno-like 4, RNA bindi 98.9 1.7E-09 5.7E-14 74.7 6.8 49 1-49 45-98 (106)
247 2do4_A Squamous cell carcinoma 98.9 1E-09 3.5E-14 75.0 5.5 47 2-49 50-98 (100)
248 2cqp_A RNA-binding protein 12; 98.9 7.4E-10 2.5E-14 75.4 4.7 46 2-47 48-95 (98)
249 3n9u_C Cleavage and polyadenyl 98.9 4.7E-10 1.6E-14 83.2 4.0 47 1-47 89-137 (156)
250 3s7r_A Heterogeneous nuclear r 98.9 7.1E-10 2.4E-14 73.8 4.5 44 1-44 43-87 (87)
251 1iqt_A AUF1, heterogeneous nuc 98.9 5.1E-10 1.7E-14 72.3 3.6 44 1-44 31-75 (75)
252 2fc9_A NCL protein; structure 98.9 2.3E-09 7.9E-14 73.4 7.2 48 1-49 44-93 (101)
253 3mdf_A Peptidyl-prolyl CIS-tra 98.9 9.2E-10 3.1E-14 72.8 5.0 44 1-44 39-84 (85)
254 2dis_A Unnamed protein product 98.9 2.7E-09 9.3E-14 74.0 7.6 47 3-49 44-94 (109)
255 2la6_A RNA-binding protein FUS 98.9 5.7E-10 2E-14 76.2 4.0 45 1-45 53-99 (99)
256 2hvz_A Splicing factor, argini 98.9 7.3E-10 2.5E-14 75.9 4.5 40 10-49 36-77 (101)
257 2cqc_A Arginine/serine-rich sp 98.9 9.8E-10 3.4E-14 74.3 5.1 46 1-46 47-94 (95)
258 2dgw_A Probable RNA-binding pr 98.9 9.3E-10 3.2E-14 73.9 4.8 46 2-48 42-88 (91)
259 2e5h_A Zinc finger CCHC-type a 98.9 1.3E-09 4.3E-14 73.6 5.5 44 1-44 48-93 (94)
260 2fy1_A RNA-binding motif prote 98.9 1.6E-09 5.5E-14 76.3 6.2 47 2-49 40-88 (116)
261 2cpy_A RNA-binding protein 12; 98.9 5.7E-10 1.9E-14 78.3 3.7 47 1-48 48-95 (114)
262 1p27_B RNA-binding protein 8A; 98.9 6.5E-10 2.2E-14 76.8 3.9 48 1-48 55-104 (106)
263 3ucg_A Polyadenylate-binding p 98.9 9.5E-10 3.3E-14 73.4 4.6 47 1-47 38-85 (89)
264 1wg5_A Heterogeneous nuclear r 98.9 2.1E-09 7.1E-14 74.2 6.2 48 1-49 48-96 (104)
265 2jrs_A RNA-binding protein 39; 98.9 6.4E-10 2.2E-14 77.3 3.6 48 1-48 58-107 (108)
266 2ek1_A RNA-binding protein 12; 98.9 8.9E-10 3E-14 74.5 4.3 45 2-46 48-94 (95)
267 2dnn_A RNA-binding protein 12; 98.9 1.4E-09 4.9E-14 75.7 5.3 45 1-46 47-92 (109)
268 2cqd_A RNA-binding region cont 98.9 4.1E-09 1.4E-13 74.0 7.7 48 1-49 49-98 (116)
269 2kn4_A Immunoglobulin G-bindin 98.9 2.7E-09 9.2E-14 79.1 6.8 49 1-49 102-152 (158)
270 2kxn_B Transformer-2 protein h 98.9 1.2E-09 4E-14 78.5 4.3 48 1-48 78-127 (129)
271 2cpf_A RNA binding motif prote 98.9 1.2E-09 4.1E-14 74.4 4.0 43 7-49 46-90 (98)
272 2div_A TRNA selenocysteine ass 98.9 1.3E-09 4.3E-14 74.4 4.0 48 1-48 42-95 (99)
273 3ex7_B RNA-binding protein 8A; 98.9 1.9E-09 6.6E-14 76.8 5.0 50 1-50 54-105 (126)
274 2ki2_A SS-DNA binding protein 98.9 9.4E-10 3.2E-14 73.7 3.0 48 1-49 33-82 (90)
275 1p1t_A Cleavage stimulation fa 98.9 1E-09 3.5E-14 75.5 3.3 48 2-49 41-90 (104)
276 2d9p_A Polyadenylate-binding p 98.9 2.8E-09 9.6E-14 73.2 5.3 44 7-50 51-96 (103)
277 2cpi_A CCR4-NOT transcription 98.9 5.5E-09 1.9E-13 72.8 6.9 47 2-48 51-102 (111)
278 2jwn_A Embryonic polyadenylate 98.9 3.2E-09 1.1E-13 75.5 5.7 48 1-48 68-116 (124)
279 2cq4_A RNA binding motif prote 98.8 2.5E-09 8.5E-14 74.9 4.8 47 1-47 57-104 (114)
280 1ufw_A Synaptojanin 2; RNP dom 98.8 1.2E-08 4E-13 68.1 7.7 73 98-178 12-94 (95)
281 4a8x_A RNA-binding protein wit 98.8 2.5E-09 8.4E-14 71.2 4.5 48 1-48 36-86 (88)
282 1h2v_Z 20 kDa nuclear CAP bind 98.8 3E-09 1E-13 78.7 5.4 50 1-50 71-122 (156)
283 3lqv_A PRE-mRNA branch site pr 98.8 5.5E-10 1.9E-14 78.4 1.2 41 7-47 43-85 (115)
284 2pe8_A Splicing factor 45; RRM 98.8 3E-09 1E-13 73.6 4.8 45 2-46 46-93 (105)
285 2dgx_A KIAA0430 protein; RRM d 98.8 5.6E-09 1.9E-13 70.8 6.0 46 1-49 45-92 (96)
286 2hgm_A HNRPF protein, heteroge 98.8 8.2E-10 2.8E-14 78.9 1.8 46 1-47 75-121 (126)
287 2wbr_A GW182, gawky, LD47780P; 98.8 4.6E-09 1.6E-13 69.6 5.2 37 9-45 41-79 (89)
288 1uaw_A Mouse-musashi-1; RNP-ty 98.8 1.3E-09 4.6E-14 70.6 2.6 44 1-44 32-76 (77)
289 1s79_A Lupus LA protein; RRM, 98.8 1.9E-09 6.4E-14 74.3 3.4 45 1-46 43-88 (103)
290 2dnh_A Bruno-like 5, RNA bindi 98.8 4.5E-09 1.5E-13 72.4 5.2 47 2-49 48-99 (105)
291 2lcw_A RNA-binding protein FUS 98.3 4.5E-10 1.5E-14 79.1 0.0 50 1-50 47-98 (116)
292 2lea_A Serine/arginine-rich sp 98.8 3.5E-09 1.2E-13 76.6 4.7 49 1-49 79-129 (135)
293 2cqi_A Nucleolysin TIAR; RNA r 98.8 9.7E-09 3.3E-13 70.5 6.8 47 2-50 48-96 (103)
294 2hgl_A HNRPF protein, heteroge 98.8 2.1E-09 7.3E-14 77.8 3.4 46 1-47 79-125 (136)
295 2khc_A Testis-specific RNP-typ 98.8 2.6E-09 9E-14 75.2 3.8 44 1-44 72-117 (118)
296 2db1_A Heterogeneous nuclear r 98.8 3.6E-09 1.2E-13 74.7 4.5 45 2-47 53-98 (118)
297 3ulh_A THO complex subunit 4; 98.8 4.1E-09 1.4E-13 72.8 4.7 43 2-45 62-106 (107)
298 2kt5_A RNA and export factor-b 98.8 5.8E-09 2E-13 74.1 5.4 47 2-49 68-116 (124)
299 2cpx_A Hypothetical protein FL 98.8 4E-09 1.4E-13 73.9 4.4 47 4-50 60-108 (115)
300 1jmt_A Splicing factor U2AF 35 98.8 4.8E-09 1.7E-13 72.4 4.7 42 2-44 60-103 (104)
301 1wel_A RNA-binding protein 12; 98.8 1.2E-09 4E-14 77.8 1.6 46 2-47 58-104 (124)
302 2nlw_A Eukaryotic translation 98.8 5.8E-09 2E-13 72.0 5.0 44 5-48 55-101 (105)
303 2lmi_A GRSF-1, G-rich sequence 98.8 2.7E-09 9.1E-14 74.0 3.2 46 1-47 46-92 (107)
304 1x4e_A RNA binding motif, sing 98.8 1.3E-09 4.4E-14 72.2 1.5 45 1-45 37-83 (85)
305 2ywk_A Putative RNA-binding pr 98.8 5.1E-09 1.8E-13 70.7 4.3 43 2-45 49-93 (95)
306 3q2s_C Cleavage and polyadenyl 98.8 2.3E-09 7.9E-14 84.5 2.8 47 1-47 102-150 (229)
307 2do0_A HnRNP M, heterogeneous 98.8 1.6E-08 5.6E-13 70.6 6.9 45 2-47 48-94 (114)
308 2hgn_A Heterogeneous nuclear r 98.8 2.1E-09 7.2E-14 78.1 1.9 48 1-49 77-125 (139)
309 2cq3_A RNA-binding protein 9; 98.7 1.8E-08 6E-13 69.1 6.4 42 9-50 53-96 (103)
310 1fjc_A Nucleolin RBD2, protein 98.7 1.2E-08 4.1E-13 69.0 5.4 45 5-49 47-93 (96)
311 3v4m_A Splicing factor U2AF 65 98.7 1.4E-08 4.7E-13 70.2 5.7 46 1-46 47-96 (105)
312 2a3j_A U1 small nuclear ribonu 98.7 7E-09 2.4E-13 74.2 4.1 44 6-49 67-112 (127)
313 2dha_A FLJ20171 protein; RRM d 98.7 3.6E-09 1.2E-13 75.3 2.0 45 2-47 60-105 (123)
314 1x4a_A Splicing factor, argini 98.7 3.1E-08 1.1E-12 68.6 6.6 44 6-49 56-101 (109)
315 2xs2_A Deleted in azoospermia- 98.7 3.8E-09 1.3E-13 72.4 1.9 48 1-49 41-88 (102)
316 1rk8_A CG8781-PA, CG8781-PA pr 98.7 9.4E-09 3.2E-13 76.8 4.2 49 1-49 104-154 (165)
317 3dxb_A Thioredoxin N-terminall 98.7 3.6E-08 1.2E-12 77.1 7.4 66 112-177 140-211 (222)
318 1x5o_A RNA binding motif, sing 98.7 1.4E-08 4.8E-13 71.0 4.5 46 1-47 57-112 (114)
319 2krb_A Eukaryotic translation 98.7 1E-08 3.6E-13 67.2 3.0 37 5-41 41-80 (81)
320 2j8a_A Histone-lysine N-methyl 98.7 1.3E-08 4.3E-13 72.1 3.4 45 1-45 38-94 (136)
321 2dgv_A HnRNP M, heterogeneous 98.7 2.3E-08 7.9E-13 67.0 4.5 44 6-49 43-88 (92)
322 3egn_A RNA-binding protein 40; 98.6 1.6E-08 5.4E-13 73.7 3.6 45 5-49 86-132 (143)
323 2e5j_A Methenyltetrahydrofolat 98.6 2.3E-08 7.8E-13 67.8 3.9 42 7-48 52-95 (97)
324 2d9o_A DNAJ (HSP40) homolog, s 98.6 6E-08 2E-12 66.3 6.0 42 8-49 51-92 (100)
325 1x5p_A Negative elongation fac 98.6 7.8E-08 2.7E-12 65.2 6.5 42 8-49 46-89 (97)
326 2jvr_A Nucleolar protein 3; RN 98.6 4.7E-08 1.6E-12 68.1 5.4 40 8-47 64-105 (111)
327 2err_A Ataxin-2-binding protei 98.6 3.3E-08 1.1E-12 68.6 4.5 40 8-47 66-107 (109)
328 1nu4_A U1A RNA binding domain; 98.6 2.1E-08 7.2E-13 67.9 3.2 43 7-49 47-91 (97)
329 3pgw_S U1-70K; protein-RNA com 98.6 8E-08 2.7E-12 82.7 7.3 49 1-49 134-184 (437)
330 2cqh_A IGF-II mRNA-binding pro 98.6 6.8E-08 2.3E-12 64.9 5.5 41 9-49 42-85 (93)
331 3ue2_A Poly(U)-binding-splicin 98.6 2.1E-08 7.2E-13 70.7 3.0 40 7-46 67-108 (118)
332 2dit_A HIV TAT specific factor 98.6 9.5E-08 3.2E-12 66.6 6.2 41 9-49 62-104 (112)
333 2cpd_A Apobec-1 stimulating pr 98.6 1.4E-07 4.8E-12 64.1 6.7 41 9-49 49-91 (99)
334 2dnl_A Cytoplasmic polyadenyla 98.6 8E-08 2.7E-12 67.2 5.5 45 1-45 39-86 (114)
335 2dgu_A Heterogeneous nuclear r 98.5 3E-07 1E-11 62.9 7.4 42 10-51 44-87 (103)
336 2diu_A KIAA0430 protein; struc 98.5 1.5E-07 5.2E-12 62.9 5.5 40 12-51 47-88 (96)
337 1wg1_A KIAA1579 protein, homol 98.5 1.1E-07 3.8E-12 63.2 4.8 39 9-47 38-78 (88)
338 3r27_A HnRNP L, heterogeneous 98.5 1.2E-07 4E-12 64.7 5.0 40 9-48 55-98 (100)
339 2dnq_A RNA-binding protein 4B; 98.5 2E-07 6.8E-12 62.2 5.6 40 11-50 42-83 (90)
340 1x4d_A Matrin 3; structural ge 98.5 1.6E-07 5.5E-12 64.3 5.3 41 10-50 51-95 (102)
341 2la4_A Nuclear and cytoplasmic 98.5 9.1E-08 3.1E-12 65.3 3.8 39 9-47 61-101 (101)
342 2cpj_A Non-POU domain-containi 98.5 1.9E-07 6.4E-12 63.5 5.1 41 9-49 49-91 (99)
343 1x4g_A Nucleolysin TIAR; struc 98.5 3E-07 1E-11 63.6 6.2 40 11-50 61-102 (109)
344 1sjq_A Polypyrimidine tract-bi 98.5 1.5E-07 5.1E-12 64.8 4.3 40 10-49 51-94 (105)
345 1x4f_A Matrin 3; structural ge 98.4 1.8E-07 6.1E-12 65.2 4.7 42 9-50 60-105 (112)
346 2dgt_A RNA-binding protein 30; 98.4 5.1E-07 1.7E-11 60.4 6.7 39 11-49 44-84 (92)
347 2xnq_A Nuclear polyadenylated 98.4 2.7E-07 9.1E-12 62.6 5.3 38 10-47 56-95 (97)
348 1wf1_A RNA-binding protein RAL 98.4 2.2E-07 7.6E-12 64.4 5.0 40 10-49 61-102 (110)
349 2cq1_A PTB-like protein L; RRM 98.4 4.3E-07 1.5E-11 62.1 6.3 41 10-50 50-94 (101)
350 2e5g_A U6 snRNA-specific termi 98.4 2.3E-07 7.8E-12 62.4 4.8 45 2-49 39-84 (94)
351 1wex_A Hypothetical protein (r 98.4 3.2E-07 1.1E-11 63.1 5.5 40 10-49 50-93 (104)
352 1x4c_A Splicing factor, argini 98.4 5.2E-07 1.8E-11 62.3 6.3 39 12-50 51-96 (108)
353 2bz2_A Negative elongation fac 98.4 2.4E-07 8.3E-12 65.5 4.7 41 9-49 71-113 (121)
354 2hzc_A Splicing factor U2AF 65 98.4 3.2E-07 1.1E-11 60.6 4.6 36 8-43 50-86 (87)
355 1why_A Hypothetical protein ri 98.4 3.4E-07 1.2E-11 61.9 4.7 38 11-48 53-94 (97)
356 2jvo_A Nucleolar protein 3; nu 98.4 3.8E-07 1.3E-11 63.1 4.7 39 11-49 65-105 (108)
357 2dnp_A RNA-binding protein 14; 98.4 6.5E-07 2.2E-11 59.6 5.7 39 11-49 43-83 (90)
358 3d2w_A TAR DNA-binding protein 98.4 5.4E-07 1.8E-11 60.1 5.2 41 9-49 46-86 (89)
359 2l9w_A U4/U6 snRNA-associated- 98.4 2.8E-06 9.6E-11 57.8 8.6 69 100-174 20-95 (117)
360 2kvi_A Nuclear polyadenylated 98.3 2.4E-07 8.2E-12 62.6 3.2 40 10-49 44-85 (96)
361 3s6e_A RNA-binding protein 39; 98.3 4.1E-07 1.4E-11 63.6 4.3 37 10-46 54-92 (114)
362 2ytc_A PRE-mRNA-splicing facto 98.3 4.9E-07 1.7E-11 59.4 4.3 36 9-44 46-84 (85)
363 1sjr_A Polypyrimidine tract-bi 98.3 6.6E-07 2.3E-11 66.3 5.4 42 8-49 81-126 (164)
364 2e44_A Insulin-like growth fac 98.3 5.5E-07 1.9E-11 60.7 4.6 43 2-48 49-93 (96)
365 1wf0_A TDP-43, TAR DNA-binding 98.3 5.9E-07 2E-11 59.5 4.7 41 10-50 41-81 (88)
366 2dhx_A Poly (ADP-ribose) polym 98.3 1.4E-05 4.6E-10 53.9 11.1 77 99-183 6-88 (104)
367 1whx_A Hypothetical protein ri 98.3 4.6E-07 1.6E-11 63.0 3.7 39 9-47 44-84 (111)
368 2ad9_A Polypyrimidine tract-bi 98.3 1.1E-06 3.7E-11 61.9 5.3 41 10-50 66-110 (119)
369 3zzy_A Polypyrimidine tract-bi 98.2 2.3E-06 7.8E-11 61.1 6.0 42 10-51 64-110 (130)
370 2cq2_A Hypothetical protein LO 98.2 1.1E-06 3.8E-11 61.3 3.9 38 10-47 62-106 (114)
371 2e5i_A Heterogeneous nuclear r 98.1 5.8E-06 2E-10 58.5 5.9 38 12-49 62-104 (124)
372 3beg_B Splicing factor, argini 98.1 5.1E-06 1.7E-10 58.0 5.2 37 12-48 52-95 (115)
373 2dnr_A Synaptojanin-1; RRM dom 97.9 1.2E-05 4.2E-10 53.1 4.8 35 13-47 51-86 (91)
374 1whv_A Poly(A)-specific ribonu 97.8 0.00013 4.4E-09 48.6 8.2 55 98-161 13-67 (100)
375 1wey_A Calcipressin 1; structu 97.5 0.0005 1.7E-08 46.5 7.3 74 101-180 5-85 (104)
376 1ufw_A Synaptojanin 2; RNP dom 97.5 0.00013 4.3E-09 48.6 4.2 33 14-46 61-94 (95)
377 3ctr_A Poly(A)-specific ribonu 97.3 0.0003 1E-08 46.9 4.4 52 101-161 6-57 (101)
378 3tht_A Alkylated DNA repair pr 97.2 0.00035 1.2E-08 57.9 4.5 36 10-45 55-97 (345)
379 1wwh_A Nucleoporin 35, nucleop 97.0 0.0041 1.4E-07 43.2 7.9 71 99-176 22-94 (119)
380 1uw4_A UPF3X; nonsense mediate 97.0 0.0035 1.2E-07 41.5 7.2 60 102-161 2-63 (91)
381 2f3j_A RNA and export factor b 96.5 0.0014 4.6E-08 49.2 3.1 25 6-30 124-148 (177)
382 3u1l_A PRE-mRNA-splicing facto 96.1 0.0035 1.2E-07 49.2 3.4 26 9-34 177-204 (240)
383 3pq1_A Poly(A) RNA polymerase; 96.0 0.0036 1.2E-07 53.8 3.3 56 101-162 53-108 (464)
384 2dhx_A Poly (ADP-ribose) polym 96.0 0.01 3.4E-07 39.9 4.6 35 12-46 48-83 (104)
385 2i2y_A Fusion protein consists 95.8 0.0055 1.9E-07 44.2 3.0 21 10-30 109-129 (150)
386 2l08_A Regulator of nonsense t 95.6 0.015 5.1E-07 38.8 4.2 61 101-161 9-71 (97)
387 3p3d_A Nucleoporin 53; structu 95.4 0.036 1.2E-06 39.0 5.8 76 101-177 7-97 (132)
388 2l9w_A U4/U6 snRNA-associated- 95.2 0.024 8.3E-07 38.5 4.2 31 13-43 64-96 (117)
389 1owx_A Lupus LA protein, SS-B, 93.5 0.091 3.1E-06 36.6 4.3 33 13-45 57-94 (121)
390 3d45_A Poly(A)-specific ribonu 89.6 1.1 3.6E-05 39.1 7.6 54 100-162 439-492 (507)
391 1wey_A Calcipressin 1; structu 81.1 1.2 4E-05 29.9 2.8 34 14-47 49-84 (104)
392 3p3d_A Nucleoporin 53; structu 73.1 4.1 0.00014 28.5 3.9 35 11-45 62-97 (132)
393 1wwh_A Nucleoporin 35, nucleop 70.7 4.6 0.00016 27.7 3.7 35 11-45 59-95 (119)
394 4e8u_A Putative uncharacterize 38.8 64 0.0022 23.5 5.3 56 102-160 13-80 (172)
395 2g0c_A ATP-dependent RNA helic 38.3 57 0.002 19.6 4.5 66 103-177 2-75 (76)
396 3zzp_A TS9, ribosomal protein 32.8 89 0.003 19.3 4.8 27 13-39 7-33 (77)
397 2k5n_A Putative cold-shock pro 24.3 32 0.0011 21.2 1.4 12 9-20 12-23 (74)
398 3cam_A Cold-shock domain famil 23.0 36 0.0012 20.4 1.4 12 9-20 11-22 (67)
399 3ts2_A Protein LIN-28 homolog 22.6 17 0.00057 25.9 -0.2 28 116-151 2-29 (148)
400 2kcm_A Cold shock domain famil 22.6 36 0.0012 20.9 1.4 12 9-20 10-21 (74)
401 3lpe_A Putative transcription 22.4 73 0.0025 20.3 3.0 20 10-29 49-68 (92)
402 1c9o_A CSPB, cold-shock protei 22.4 34 0.0012 20.4 1.2 11 9-19 11-21 (66)
403 3h7h_B Transcription elongatio 21.9 74 0.0025 21.1 2.9 27 9-35 49-75 (106)
404 1h95_A CSD, Y-box binding prot 21.8 38 0.0013 21.1 1.4 11 9-19 18-28 (79)
405 3a0j_A Cold shock protein; OB- 21.4 37 0.0012 20.8 1.2 11 9-19 11-21 (73)
406 3ulj_A LIN28B, DNA-binding pro 21.2 39 0.0013 21.7 1.4 10 9-18 18-27 (90)
407 1g6p_A Cold shock protein TMCS 20.9 38 0.0013 20.2 1.2 11 9-19 10-20 (66)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2.1e-29 Score=194.93 Aligned_cols=142 Identities=30% Similarity=0.568 Sum_probs=115.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
|++|+.|+.++|||||+|.+.++|++|| .+++.++|+.|.|.++.+......+.
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~------------------------- 99 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG------------------------- 99 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccc-------------------------
Confidence 4578889999999999999999999999 67889999999999987653321110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
......+|||+|||+++|+++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|
T Consensus 100 -----------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 100 -----------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -----------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 123468999999999999999999999999999999999988999999999999999999999
Q ss_pred Hh-cCCccCCeEEEEEecCCCCCCCC
Q 027167 160 SR-RSHEICGQQVAIDSATPLDDAGP 184 (227)
Q Consensus 160 l~-~~~~~~g~~l~V~~a~~~~~~~~ 184 (227)
+. +.+.+.|+.|.|.++.++.....
T Consensus 163 ~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 163 VIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHCSCCEETTEECEEEECC-------
T ss_pred HHhCCcEECCEEEEEEecCChhHhcc
Confidence 96 45599999999999999887654
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.2e-28 Score=185.98 Aligned_cols=132 Identities=30% Similarity=0.583 Sum_probs=118.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
|++|+.||+++|||||+|.+.++|++|+.+++.++|+.|.|.++.++..
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~------------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------------------------
Confidence 5788899999999999999999999999888999999999988765321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHH
Q 027167 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 160 (227)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al 160 (227)
.....+|||+|||+++++++|+++|++||.|.+++++++..++.++|||||+|.+.++|.+|+
T Consensus 84 -----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 84 -----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp -----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred -----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 112568999999999999999999999999999999999889999999999999999999999
Q ss_pred h-cCCccCCeEEEEEecCCCC
Q 027167 161 R-RSHEICGQQVAIDSATPLD 180 (227)
Q Consensus 161 ~-~~~~~~g~~l~V~~a~~~~ 180 (227)
. +...+.|+.|+|.+|.|++
T Consensus 147 ~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 147 QNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HCSEECSSSSCEEEEECCCCC
T ss_pred hCCCEEeCCeEEEEeecCCCC
Confidence 7 3348999999999999874
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.1e-26 Score=175.29 Aligned_cols=128 Identities=20% Similarity=0.328 Sum_probs=114.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.|++++|||||+|.+.++|++|+ +++..+.|+.|.|.++.+...
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------------------------- 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----------------------------
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----------------------------
Confidence 4677889999999999999999999999 689999999999999875532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||..+++++|+++|++||.|..+.++++..+++++++|||+|.+.++|.+
T Consensus 86 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 86 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp -------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 2346799999999999999999999999999999999998889999999999999999999
Q ss_pred HHhcC--CccCC--eEEEEEec
Q 027167 159 VSRRS--HEICG--QQVAIDSA 176 (227)
Q Consensus 159 al~~~--~~~~g--~~l~V~~a 176 (227)
|+..+ ..+.| +.|+|.+|
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 99744 47877 99999986
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-26 Score=172.34 Aligned_cols=130 Identities=21% Similarity=0.345 Sum_probs=114.1
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
++|+. +.++|||||+|.+.++|++|+ +++..+.|+.|.|.++.+....
T Consensus 33 ~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~----------------------------- 82 (166)
T 3md3_A 33 MIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS----------------------------- 82 (166)
T ss_dssp ECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC-----------------------------
T ss_pred EECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC-----------------------------
Confidence 45554 789999999999999999999 6899999999999998654321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
......+|||+|||..+++++|+++|++||.|..+.++++..++.++|+|||+|.+.++|.+|
T Consensus 83 -----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 83 -----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp -----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred -----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 123467999999999999999999999999999999999988999999999999999999999
Q ss_pred Hh--cCCccCCeEEEEEecCC
Q 027167 160 SR--RSHEICGQQVAIDSATP 178 (227)
Q Consensus 160 l~--~~~~~~g~~l~V~~a~~ 178 (227)
+. +...+.|+.|+|.||.+
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 97 45599999999999864
No 5
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1e-26 Score=176.76 Aligned_cols=129 Identities=18% Similarity=0.326 Sum_probs=112.3
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
+++|..++.++|||||+|.+.++|++|| +++..+.|+.|.|.++.++....
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~---------------------------- 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK---------------------------- 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST----------------------------
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc----------------------------
Confidence 3667788999999999999999999999 78999999999999987653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHH
Q 027167 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159 (227)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~a 159 (227)
.....+|||+|||.++++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|
T Consensus 96 ------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 96 ------------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp ------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHH
T ss_pred ------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHH
Confidence 2346799999999999999999999999988766 36778999999999999999999
Q ss_pred HhcC--CccCCeEEEEEecCCCC
Q 027167 160 SRRS--HEICGQQVAIDSATPLD 180 (227)
Q Consensus 160 l~~~--~~~~g~~l~V~~a~~~~ 180 (227)
+..+ ..+.|+.|+|.++.|++
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHhCCCEECCeEEEEEecCCCC
Confidence 9754 49999999999999864
No 6
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=2.7e-26 Score=177.63 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=119.8
Q ss_pred CCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCC
Q 027167 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (227)
Q Consensus 4 d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (227)
+..+++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.+............
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~------------------------ 99 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPS------------------------ 99 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSS------------------------
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCc------------------------
Confidence 3445789999999999999999999 789999999999998876533211100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-
Q 027167 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 161 (227)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~- 161 (227)
...+ ............+|||+|||+.+++++|+++|++||.|..|.+.++..++.++|||||+|.+.++|.+|+.
T Consensus 100 -~~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 100 -VYVP---GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp -CCCT---TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred -CCCC---CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 0000 00011123567899999999999999999999999999999999998899999999999999999999997
Q ss_pred -cCCccCCeEEEEEecCCCCCC
Q 027167 162 -RSHEICGQQVAIDSATPLDDA 182 (227)
Q Consensus 162 -~~~~~~g~~l~V~~a~~~~~~ 182 (227)
+...+.|+.|.|.++.++.++
T Consensus 176 l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 176 LNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp HTTCEETTEECEEEESCCCCCC
T ss_pred cCCCEECCEEEEEEECCCCCCC
Confidence 455999999999999987653
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.1e-26 Score=180.56 Aligned_cols=147 Identities=20% Similarity=0.411 Sum_probs=119.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.+++++|||||+|.+.++|++|+ +++..|.|+.|.|.++....... +.......
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~------------------~~~~~~~~- 120 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQ------------------PIIDQLAE- 120 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGH------------------HHHHHHHH-
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccc------------------hhhhhhhc-
Confidence 4678889999999999999999999999 58899999999998776543210 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
......+|||+|||.++++++|+++|++||.|..|+++++..++++++||||+|.+.++|.+
T Consensus 121 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 121 ------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 02346899999999999999999999999999999999998899999999999999999999
Q ss_pred HHhc--CCccCCeEEEEEecCCCCCCCC
Q 027167 159 VSRR--SHEICGQQVAIDSATPLDDAGP 184 (227)
Q Consensus 159 al~~--~~~~~g~~l~V~~a~~~~~~~~ 184 (227)
|+.. ...+.|+.|+|.++.+++...+
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 9974 4599999999999998865543
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=2.3e-26 Score=173.10 Aligned_cols=128 Identities=23% Similarity=0.452 Sum_probs=113.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.+|.++|||||+|.+.++|++|+ +++..+.|+.|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 3567889999999999999999999999 689999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||..+++++|+++|++||.|..++++++..++.++++|||+|.+.++|.+
T Consensus 85 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 85 -------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp -------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 1235789999999999999999999999999999999998889999999999999999999
Q ss_pred HHhc--CCccCCeE--EEEEec
Q 027167 159 VSRR--SHEICGQQ--VAIDSA 176 (227)
Q Consensus 159 al~~--~~~~~g~~--l~V~~a 176 (227)
|+.. ...+.|+. |+|.||
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 9974 45888864 888876
No 9
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=6.4e-27 Score=183.87 Aligned_cols=134 Identities=20% Similarity=0.335 Sum_probs=115.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.|++++|||||+|.+.++|++|| +++..+.|+.|.+.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 4678999999999999999999999999 57889999999998876442210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 158 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~ 158 (227)
.....+|||+|||+++|+++|+++|++||.|..|+|++|. +.++|||||+|.+.++|++
T Consensus 100 -------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 100 -------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp -------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHH
T ss_pred -------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHH
Confidence 1135689999999999999999999999999999999874 3479999999999999999
Q ss_pred HHhc--CCccCCeEEEEEecCCCCCC
Q 027167 159 VSRR--SHEICGQQVAIDSATPLDDA 182 (227)
Q Consensus 159 al~~--~~~~~g~~l~V~~a~~~~~~ 182 (227)
|+.. ...|.|+.|+|.+|.+++.+
T Consensus 159 Ai~~lng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp HHHHHTTCEETTEECEEEECCCHHHH
T ss_pred HHHHhCCCEECCEEEEEEEcCCCccc
Confidence 9974 45999999999999987543
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3.2e-26 Score=173.39 Aligned_cols=125 Identities=18% Similarity=0.366 Sum_probs=110.9
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
..++.++|||||+|.+.++|++|+ ++++.+.|+.|.|.++.+...
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------------------------------- 90 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------------------------------- 90 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------------------------------
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------------------------------
Confidence 345778999999999999999999 688999999999987654321
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-
Q 027167 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR- 162 (227)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~- 162 (227)
.....+|||+|||..+++++|+++|++||.|..+.++++..+++++|+|||+|.+.++|.+|+..
T Consensus 91 --------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 91 --------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp --------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 12367999999999999999999999999999999999988999999999999999999999974
Q ss_pred -CCccCCeEEEEEecC
Q 027167 163 -SHEICGQQVAIDSAT 177 (227)
Q Consensus 163 -~~~~~g~~l~V~~a~ 177 (227)
...+.|+.|.|.+|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 559999999999973
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=6.9e-25 Score=179.90 Aligned_cols=137 Identities=20% Similarity=0.351 Sum_probs=109.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+. +.++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.+.......
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------------- 203 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------------- 203 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------------------
Confidence 345555 789999999999999999999 6899999999999998876432211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCEeEEEeecCCC-CCCcccEEEEEecCHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPK-RTGHRGFGFVTFAEEVVA 156 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~i~~~~d~~-~~~~~g~afV~f~~~~~a 156 (227)
........+|||+|||+. +++++|+++|++||.|..|+++++.. |+.++|||||+|.+.++|
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 001345789999999999 99999999999999999999999865 588999999999999999
Q ss_pred HHHHhcCC--ccCCeEEEEEecCCCC
Q 027167 157 DRVSRRSH--EICGQQVAIDSATPLD 180 (227)
Q Consensus 157 ~~al~~~~--~~~g~~l~V~~a~~~~ 180 (227)
.+|+ .++ .+.|+.|.|.++.+++
T Consensus 268 ~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 268 ERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999 655 9999999999999874
No 12
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=7.9e-25 Score=164.07 Aligned_cols=85 Identities=26% Similarity=0.436 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
....+|||+|||+++++++|+++|++||.|..|++++|..+++++|||||+|.+.++|++|+..+ ..+.|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999754 4899999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.++..+.
T Consensus 148 ~~~~~~~ 154 (158)
T 2kn4_A 148 RYGRPPD 154 (158)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9876544
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=7.1e-25 Score=179.12 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=119.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhcc
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (227)
|++|+.||.++|||||+|.+.++|.+|+ +++..++|+.|.|.++.++....
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------------------- 179 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------------------- 179 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT---------------------------
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc---------------------------
Confidence 3568889999999999999999999999 68999999999999987543211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHH
Q 027167 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 157 (227)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~ 157 (227)
......+|||+|||+.+ ++++|+++|++||.|.+++++++. +++++|+|||+|.+.++|.
T Consensus 180 ------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 180 ------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp ------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred ------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 02347899999999995 999999999999999999999984 7889999999999999999
Q ss_pred HHHhc--CCccCCeEEEEEecCCCCCC
Q 027167 158 RVSRR--SHEICGQQVAIDSATPLDDA 182 (227)
Q Consensus 158 ~al~~--~~~~~g~~l~V~~a~~~~~~ 182 (227)
+|+.. ...+.|+.|+|.++.+++.+
T Consensus 241 ~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 241 EAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 99974 45999999999999987753
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=2e-24 Score=163.75 Aligned_cols=128 Identities=21% Similarity=0.412 Sum_probs=105.6
Q ss_pred CCCCCCC--CcccEEEEEEcCHHHHHHHH--hcCceeC---CcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhh
Q 027167 2 PKDQGSK--AHRGIGFITFASADSVENLM--VDTHELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR 74 (227)
Q Consensus 2 ~~d~~tg--~srG~aFV~F~~~~~A~~Ai--~~~~~~~---gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
++|+.++ +++|||||+|.+.++|++|+ +++..+. ++.+.+.++.+....
T Consensus 36 ~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 91 (175)
T 3nmr_A 36 LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN------------------------ 91 (175)
T ss_dssp EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS------------------------
T ss_pred EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc------------------------
Confidence 5667776 99999999999999999999 5666654 577777666433211
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHH
Q 027167 75 YAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 154 (227)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~ 154 (227)
.....+|||+|||+++|+++|+++|++||.|.+++++++. +++++|||||+|.+.+
T Consensus 92 -----------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 92 -----------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRA 147 (175)
T ss_dssp -----------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHH
T ss_pred -----------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHH
Confidence 2246789999999999999999999999999999999984 5889999999999999
Q ss_pred HHHHHHhcCC--ccC---CeEEEEEecC
Q 027167 155 VADRVSRRSH--EIC---GQQVAIDSAT 177 (227)
Q Consensus 155 ~a~~al~~~~--~~~---g~~l~V~~a~ 177 (227)
+|.+|+..++ .+. +++|+|.||.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999997544 444 4999999973
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=4.9e-23 Score=168.01 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccC-CeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~-g~~l~V~ 174 (227)
.....+|||+|||..+++++|+++|++||.|.+|+++++ .+++|||+|.+.++|.+|+..++ .+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 445789999999999999999999999999999999876 35899999999999999997554 888 9999999
Q ss_pred ecC
Q 027167 175 SAT 177 (227)
Q Consensus 175 ~a~ 177 (227)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=1.1e-22 Score=161.34 Aligned_cols=151 Identities=13% Similarity=0.206 Sum_probs=106.9
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
+|||||+|.+.++|++|+ +++..|.|+.|.|.++.+............. ..... ...........
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~ 138 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ---GLTKD----------YGNSPLHRFKK 138 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTT---TTEEE----------CTTCSSCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccc---ccccc----------cccCcccccCC
Confidence 899999999999999999 6899999999999998765332111000000 00000 00000000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCc
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHE 165 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~ 165 (227)
...........+..+|||+|||..+++++|+++|++|| .|..|+++++ .+++|||+|.+.++|.+|+.. ...
T Consensus 139 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 139 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 213 (229)
T ss_dssp TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCc
Confidence 00000011234578999999999999999999999999 9999999764 478999999999999999974 458
Q ss_pred cC-CeEEEEEecCCC
Q 027167 166 IC-GQQVAIDSATPL 179 (227)
Q Consensus 166 ~~-g~~l~V~~a~~~ 179 (227)
+. |+.|+|.|++++
T Consensus 214 ~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 214 LGENHHLRVSFSKST 228 (229)
T ss_dssp SSSSCBCEEEECSSC
T ss_pred cCCCCeEEEEEecCC
Confidence 88 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=157.56 Aligned_cols=151 Identities=12% Similarity=0.168 Sum_probs=107.6
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
+|||||+|.+.++|++|+ +++..+.|+.|.|.++.+............. ............+...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~----------- 107 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ--GLTKDYGNSPLHRFKK----------- 107 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSS--SCEEESSCCCTTSSSS-----------
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccc--cccccccCCchhhccC-----------
Confidence 899999999999999999 6899999999999998765432211100000 0000000000000000
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCc
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHE 165 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~ 165 (227)
...........+..+|||+|||..+++++|+++|++|| .|.+++++++ .+++|||+|.+.++|.+|+.. ...
T Consensus 108 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~ 182 (198)
T 1qm9_A 108 PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 182 (198)
T ss_dssp CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSC
T ss_pred ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc
Confidence 00001112234589999999999999999999999999 9999999775 478999999999999999974 458
Q ss_pred cC-CeEEEEEecCCC
Q 027167 166 IC-GQQVAIDSATPL 179 (227)
Q Consensus 166 ~~-g~~l~V~~a~~~ 179 (227)
+. |+.|+|.|++++
T Consensus 183 ~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 183 LGENHHLRVSFSKST 197 (198)
T ss_dssp CSSCCSCCEEEECCC
T ss_pred cCCCCeEEEEeeccc
Confidence 88 999999999874
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=3.8e-23 Score=161.36 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=102.6
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (227)
++|||||+|.+.++|++|| +++..|.|+.|.|.++.............................++....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------- 112 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPE-------- 112 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHH--------
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcc--------
Confidence 5899999999999999999 799999999999999865432110000000000000000000000000000
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCE--eEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-
Q 027167 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (227)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i--~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~- 164 (227)
.........+..+|||+|||+++|+++|+++|++||.| .+++++.+. +.++++|||+|.+.++|.+||..++
T Consensus 113 ---~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 113 ---QAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp ---HHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred ---cccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 00000113457899999999999999999999999998 899998874 4467999999999999999997544
Q ss_pred -ccCCe----EEEEEec
Q 027167 165 -EICGQ----QVAIDSA 176 (227)
Q Consensus 165 -~~~g~----~l~V~~a 176 (227)
++.|+ ++.|.+|
T Consensus 188 ~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 188 YQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CEECCSSSSSCEECEEE
T ss_pred CCccCCCCCcceEEEec
Confidence 67665 5666664
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=2.5e-22 Score=163.98 Aligned_cols=120 Identities=14% Similarity=0.283 Sum_probs=109.5
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227)
+.++|||||+|.+.++|++|+ +++..+.|+.|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 578999999999999999999 58899999999998642
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cC
Q 027167 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RS 163 (227)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~ 163 (227)
...+|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+. +.
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 24689999999999999999999999999999999998899999999999999999999996 45
Q ss_pred CccCCeEEEEEecCCCCC
Q 027167 164 HEICGQQVAIDSATPLDD 181 (227)
Q Consensus 164 ~~~~g~~l~V~~a~~~~~ 181 (227)
..+.|+.|.|.++.++..
T Consensus 160 ~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CEETTEECEEEECCGGGC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 599999999999987654
No 20
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=8.9e-23 Score=151.63 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=108.3
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--h-cCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (227)
....+|+++|+|.+.++|++|+ + ++..++| .|.+.++.++.........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---------------------------
Confidence 3467999999999999999999 5 8889999 9999877653221110000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--
Q 027167 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-- 161 (227)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-- 161 (227)
..............+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|+.
T Consensus 61 -----~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 61 -----HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 130 (150)
T ss_dssp -----CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHH
T ss_pred -----ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHc
Confidence 000011112445789999999999999999999999999999999887 68999999999999999997
Q ss_pred cCCccCCeEEEEEecCCCC
Q 027167 162 RSHEICGQQVAIDSATPLD 180 (227)
Q Consensus 162 ~~~~~~g~~l~V~~a~~~~ 180 (227)
+...+.|+.|+|.++.+++
T Consensus 131 ~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 131 DGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SSSCSSSSCCEEEECCCCC
T ss_pred CCCEECCeEEEEEEcCCCC
Confidence 4558999999999998864
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=4.1e-22 Score=161.06 Aligned_cols=120 Identities=28% Similarity=0.378 Sum_probs=106.8
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (227)
.+++|||||+|.+.++|++|+ +++..|.|+.|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------------------------- 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------------------------- 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------------------------
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------------------------
Confidence 457899999999999999999 689999999999998752
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-
Q 027167 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 164 (227)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~- 164 (227)
..+|||+|||..+|+++|+++|+.||.|..|.++++ .+++++|||||+|.+.++|.+|+..++
T Consensus 96 ---------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 ---------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp ---------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ---------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999 689999999999999999999997542
Q ss_pred --cc---CCeEEEEEecCCCCCC
Q 027167 165 --EI---CGQQVAIDSATPLDDA 182 (227)
Q Consensus 165 --~~---~g~~l~V~~a~~~~~~ 182 (227)
.+ .+++|.|.++.+....
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SCEESSSSCCBCEEEECCCEESS
T ss_pred CeEEecCCCceEEEeeccccCcc
Confidence 33 3999999999876543
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.87 E-value=5.1e-22 Score=162.75 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=99.7
Q ss_pred cccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCCCCCcccCCCCCCCcccchhHhhhhhccCCCCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (227)
++|||||+|.+.++|++|+ +++..+.|+.|.|.++.
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~------------------------------------------- 116 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT------------------------------------------- 116 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-------------------------------------------
T ss_pred CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-------------------------------------------
Confidence 6899999999999999999 78899999999998652
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCc
Q 027167 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHE 165 (227)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~ 165 (227)
..+|||+|||+.+++++|+++|++|| .|..|.++++.. +.+++||||+|.+.++|.+|+. +...
T Consensus 117 ------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 117 ------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp ------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 56999999999999999999999999 999999999854 7789999999999999999997 4559
Q ss_pred cCCeEEEEEecCCCCCCC
Q 027167 166 ICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 166 ~~g~~l~V~~a~~~~~~~ 183 (227)
+.|+.|.|.++.++....
T Consensus 184 ~~g~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSK 201 (292)
T ss_dssp ETTEECEEEECCCC----
T ss_pred eCCcEEEEEECCCCcccc
Confidence 999999999998876543
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=133.14 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
...+.+|||+|||+++|+++|+++|++||.|.+|++++|+.+++++|||||+|.++++|++|+.. ...+.|+.|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999974 4599999999999
Q ss_pred cCC
Q 027167 176 ATP 178 (227)
Q Consensus 176 a~~ 178 (227)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 24
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=6.1e-21 Score=142.57 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||.. .+.|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999974 4599999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99876543
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=131.98 Aligned_cols=83 Identities=28% Similarity=0.454 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC-C--ccCCeEEEEEec
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAIDSA 176 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~-~--~~~g~~l~V~~a 176 (227)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.++++|++|++.+ + .+.|+.|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999743 2 789999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.|++...
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9887643
No 26
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-20 Score=127.74 Aligned_cols=87 Identities=32% Similarity=0.467 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~ 177 (227)
.....+|||+|||+++++++|+++|++||.|..|+++.+..++++++||||+|.+.++|++|+.+++.+.|+.|.|.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 45578999999999999999999999999999999999988999999999999999999999998889999999999999
Q ss_pred CCCCCCC
Q 027167 178 PLDDAGP 184 (227)
Q Consensus 178 ~~~~~~~ 184 (227)
+++....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqg_A 92 SKQSQDS 98 (103)
T ss_dssp TTCCCCC
T ss_pred CCCcCCC
Confidence 8876543
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-19 Score=127.32 Aligned_cols=87 Identities=33% Similarity=0.532 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC-ccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~-~~~g~~l~V~~a 176 (227)
.....+|||+|||+++++++|+++|++||.|..|+|+++..++++++||||+|.+.++|++|+..++ .+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 4567899999999999999999999999999999999998899999999999999999999998654 899999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++...+.
T Consensus 94 ~~~~~~~~ 101 (116)
T 2cqd_A 94 YLGAKPRS 101 (116)
T ss_dssp TTTCCCCC
T ss_pred ccCCCccc
Confidence 87655443
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=125.58 Aligned_cols=87 Identities=34% Similarity=0.681 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||.++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+. +.+.+.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567899999999999999999999999999999999998899999999999999999999997 455999999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++....+
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876554
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=124.66 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999999889999999999999999999999754 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.+++....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 998876543
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=126.08 Aligned_cols=87 Identities=23% Similarity=0.427 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999999999999999999999999999999999889999999999999999999999754 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.+++....
T Consensus 92 a~~~~~~~~ 100 (105)
T 1x5u_A 92 ASAHNKNLS 100 (105)
T ss_dssp TTTTSCCCC
T ss_pred CCCCCcCCC
Confidence 998876543
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=124.45 Aligned_cols=86 Identities=28% Similarity=0.504 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
....+|||+|||.++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+. +...+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 357899999999999999999999999999999999998899999999999999999999997 455999999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++..+++
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 98776543
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=126.38 Aligned_cols=87 Identities=25% Similarity=0.425 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.+++++.++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456789999999999999999999999999999999999889999999999999999999999754 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+.+
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 998876654
No 33
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.9e-20 Score=136.55 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
....+|||+|||+++|+++|+++|++||.|..|.++.+..+++++|||||+|.+.++|++|+..+ ..+.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34679999999999999999999999999999999999889999999999999999999999754 4899999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++..+.+
T Consensus 125 ~~~~~~~~ 132 (135)
T 2lea_A 125 RYGRPPDS 132 (135)
T ss_dssp CCCCCCTT
T ss_pred CCCCCCcc
Confidence 98765543
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=125.29 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEE-EeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i-~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
....+|||+|||+++++++|+++|++||.|..+ ++++++.++.+++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99999889999999999999999999999854 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998876554
No 35
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=128.44 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
....+|||+|||.++++++|+++|++||.|.+|.++.+. ++++++||||+|.+.++|++|+..+ ..+.|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999996 8899999999999999999999754 5899999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8776543
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=4.5e-19 Score=125.61 Aligned_cols=87 Identities=32% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+.+++++|+++|++||.|..|+++++..++.+++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999974 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 998876544
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=128.03 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a 176 (227)
.+..+|||+|||+++++++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++|+.. ...+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999999999999999999999999999999974 45999999999999
Q ss_pred CCCCC
Q 027167 177 TPLDD 181 (227)
Q Consensus 177 ~~~~~ 181 (227)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=130.77 Aligned_cols=86 Identities=22% Similarity=0.391 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|+.||.|.+|+++++..++++++||||+|.+.++|.+|+..++ .+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999998554 89999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++..+.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876554
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=126.42 Aligned_cols=87 Identities=26% Similarity=0.457 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++.+..++++++||||+|.+.++|++|+. +.+.+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999997 45599999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.+.....+
T Consensus 90 a~~~~~~~~ 98 (103)
T 2dnm_A 90 ARYGRRDLS 98 (103)
T ss_dssp CSSCCSCCC
T ss_pred CCcCCCCCC
Confidence 998765443
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.8e-19 Score=127.78 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|.+|+|+++..++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999974 4599999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+.+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876554
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=125.39 Aligned_cols=87 Identities=28% Similarity=0.474 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++++++|+++|++||.|..|+++++..++++++||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999998999999999999999999999997 44599999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+.+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876554
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=124.03 Aligned_cols=86 Identities=21% Similarity=0.451 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCC-CCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~-~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++++++|+++|++|| |..|.++++..+ +++++||||+|.+.++|++||. +...+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999 999999999887 8899999999999999999992 33489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.+++...+
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 998876543
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.3e-19 Score=124.39 Aligned_cols=87 Identities=24% Similarity=0.404 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--c------CCccCCe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--R------SHEICGQ 169 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~------~~~~~g~ 169 (227)
.....+|||+|||+++++++|+++|++||.|..|+++++..++.+++||||+|.+.++|++|+. + ...+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567899999999999999999999999999999999999999999999999999999999996 3 5689999
Q ss_pred EEEEEecCCCCCCCC
Q 027167 170 QVAIDSATPLDDAGP 184 (227)
Q Consensus 170 ~l~V~~a~~~~~~~~ 184 (227)
.|+|.++.++.....
T Consensus 92 ~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 92 QLKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999998876554
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-19 Score=122.45 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|+++.+. ++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999996 888999999999999999999974 4589999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.+++.+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987654
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=124.46 Aligned_cols=87 Identities=29% Similarity=0.517 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecC-CCCCCcccEEEEEecCHHHHHHHHhc---CCccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD-PKRTGHRGFGFVTFAEEVVADRVSRR---SHEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d-~~~~~~~g~afV~f~~~~~a~~al~~---~~~~~g~~l~V 173 (227)
.....+|||+|||+++++++|+++|++||.|..|+++++ ..++++++||||+|.+.++|++|+.. ...+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999998 77899999999999999999999974 45999999999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.++.++.....
T Consensus 92 ~~a~~~~~~~~ 102 (107)
T 2cph_A 92 EWADSEVTVQS 102 (107)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998876543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=125.30 Aligned_cols=87 Identities=32% Similarity=0.500 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|+++++..++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999964 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++....+
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 998776543
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=5.5e-19 Score=122.77 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++++++|+++|++|| |..|+++++..+++++|||||+|.+.++|++|+. +...+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 45578999999999999999999999997 9999999999899999999999999999999993 334899999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876544
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.4e-19 Score=119.51 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=74.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~~ 179 (227)
.+|||+|||.++++++|+++|++||.|.++.++++..++++++||||+|.+.++|++|+. +...+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999998899999999999999999999997 455999999999999987
Q ss_pred C
Q 027167 180 D 180 (227)
Q Consensus 180 ~ 180 (227)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=125.45 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCC--EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC------ccCCeE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQQ 170 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~------~~~g~~ 170 (227)
..=++|||+|||+++|+++|+++|++||. +.+|++++|+.+++++|||||+|.++++|++|+..++ .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34578999999999999999999999995 5689999999999999999999999999999997432 589999
Q ss_pred EEEEecCC
Q 027167 171 VAIDSATP 178 (227)
Q Consensus 171 l~V~~a~~ 178 (227)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=121.29 Aligned_cols=82 Identities=30% Similarity=0.442 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a 176 (227)
....+|||+|||.++++++|+++|++||.|.+|.++++..++++++||||+|.+.++|++|+.. ...+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3578999999999999999999999999999999999988999999999999999999999974 45999999999999
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
.+++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=5.3e-19 Score=123.18 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCC---eEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICG---QQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g---~~l~ 172 (227)
.....+|||+|||.++++++|+++|++||.|..|+++++. ++++++||||+|.+.++|++|+.. ...+.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999996 788999999999999999999974 447777 9999
Q ss_pred EEecCCCCCCCC
Q 027167 173 IDSATPLDDAGP 184 (227)
Q Consensus 173 V~~a~~~~~~~~ 184 (227)
|.++.++..+.+
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998877654
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=123.33 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|..|+++.+ ++.+++||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456889999999999999999999999999999999998 78899999999999999999997 44589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+.+
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876554
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.1e-19 Score=124.64 Aligned_cols=86 Identities=26% Similarity=0.494 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--cc---CCeEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~---~g~~l~ 172 (227)
.....+|||+|||.++++++|+++|++||.|.+|+++++..++++++||||+|.+.++|++|+..++ .+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4567899999999999999999999999999999999999999999999999999999999997544 55 889999
Q ss_pred EEecCCCCCCC
Q 027167 173 IDSATPLDDAG 183 (227)
Q Consensus 173 V~~a~~~~~~~ 183 (227)
|.++.++..+.
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99999877654
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=124.71 Aligned_cols=87 Identities=33% Similarity=0.547 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++++++|+++|++||.|..|.+++++.++++++||||+|.+.++|++||. +.+.+.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 4567899999999999999999999999999999999998899999999999999999999997 445999999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++....+
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876543
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=124.02 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-cCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--c-cCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E-ICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~-~~g~~l~V 173 (227)
..+..+|||+|||+++|+++|+++|++ ||.|.+|+++++. ++++++||||+|.+.++|.+|+..++ . +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 89999999999999999999998554 6 99999999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.++.++..+..
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99988776543
No 56
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=125.84 Aligned_cols=86 Identities=35% Similarity=0.618 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|++||.. .+.+.|+.|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 3468999999999999999999999999999999999999999999999999999999999975 448999999999999
Q ss_pred CCCCCCC
Q 027167 178 PLDDAGP 184 (227)
Q Consensus 178 ~~~~~~~ 184 (227)
++.....
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 8876543
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=122.66 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCC---CCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAI 173 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~---~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V 173 (227)
....+|||+|||+++++++|+++|++||.|..|.++.+.. ++.+++||||+|.+.++|++|+.. ...+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998865 568899999999999999999985 45999999999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.++.++....+
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998776544
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.1e-19 Score=129.38 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|+. +...+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4557899999999999999999999999999999999998899999999999999999999996 45599999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++.....
T Consensus 99 a~~~~~~~~ 107 (126)
T 3ex7_B 99 CFVRGPPKG 107 (126)
T ss_dssp SEESSSCCC
T ss_pred ecCCCCCCC
Confidence 988776543
No 59
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=7.9e-19 Score=123.28 Aligned_cols=85 Identities=36% Similarity=0.632 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC-CccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~-~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++++++|+++|++||.|.+|+++++..+++++|||||+|.+.++|++|+..+ +.+.|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 445789999999999999999999999999999999999889999999999999999999999755 5899999999999
Q ss_pred CCCCCC
Q 027167 177 TPLDDA 182 (227)
Q Consensus 177 ~~~~~~ 182 (227)
.+++.+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 60
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=3.1e-19 Score=134.53 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999989999999999999999999999974 4589999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++..+.
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98876544
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=118.74 Aligned_cols=80 Identities=25% Similarity=0.483 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999999888999999999999999999999754 489999999999
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=124.16 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEe--------EEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~ 167 (227)
.....+|||+|||+++++++|+++|++||.|. .|+++.++.++++++||||+|.+.++|++|+. +...+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 69999998999999999999999999999997 556999
Q ss_pred CeEEEEEecCCCCCCC
Q 027167 168 GQQVAIDSATPLDDAG 183 (227)
Q Consensus 168 g~~l~V~~a~~~~~~~ 183 (227)
|+.|+|.++.++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999877654
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-18 Score=119.18 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|+++++..+ +++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 456789999999999999999999999999999999998543 689999999999999999974 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cqi_A 90 ATTPSSQKS 98 (103)
T ss_dssp CCCTTCCCC
T ss_pred CCCCccccc
Confidence 998766543
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=123.94 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|.+|.++.+..++.++|||||+|.+.++|++|+. +.+.+.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 45599999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.+++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988754
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=8e-19 Score=120.35 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~ 178 (227)
+.+|||+|||.++++++|+++|++||.|.+|+++.+..+++++|||||+|.+.++|++|+. +...+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6799999999999999999999999999999999998899999999999999999999996 45599999999999998
Q ss_pred CCC
Q 027167 179 LDD 181 (227)
Q Consensus 179 ~~~ 181 (227)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.7e-19 Score=124.12 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++.+..++++++||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4557899999999999999999999999999999999998899999999999999999999997 45599999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9887654
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=119.22 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999974 4599999999999
Q ss_pred cCC
Q 027167 176 ATP 178 (227)
Q Consensus 176 a~~ 178 (227)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 68
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=5.5e-19 Score=125.28 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a~ 177 (227)
...+|||+|||+++|+++|+++|++||.|.+|+|++|. +.++|||||+|.+.++|++||.. .+.+.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999984 34799999999999999999974 559999999999998
Q ss_pred CCCCCC
Q 027167 178 PLDDAG 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 876543
No 69
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.9e-20 Score=123.48 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEecC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a~ 177 (227)
.+|||+|||+++|+++|+++|++|| .|.+++++.|+.+++++|||||+|.+.++|++|+.. ...+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999964 459999999999999
Q ss_pred CCCCCC
Q 027167 178 PLDDAG 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 70
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-18 Score=118.90 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCC-----eE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG-----QQ 170 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g-----~~ 170 (227)
.....+|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||..++ .|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999886 799999999999999998554 8888 99
Q ss_pred EEEEecCCCCCCC
Q 027167 171 VAIDSATPLDDAG 183 (227)
Q Consensus 171 l~V~~a~~~~~~~ 183 (227)
|+|.++.++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 71
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.8e-18 Score=116.34 Aligned_cols=79 Identities=30% Similarity=0.660 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|+.. .+.+.|+.|.|.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999988999999999999999999999974 34899999999876
No 72
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=8.3e-19 Score=117.42 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++++++|+++|++||.|..|.++++..++++++||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999996 55599999999999
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-18 Score=119.29 Aligned_cols=84 Identities=21% Similarity=0.404 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|..|.+..+ +.+++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999664 44789999999999999999964 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++....+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4a_A 96 PRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 988765443
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-18 Score=118.01 Aligned_cols=85 Identities=32% Similarity=0.587 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|+++.+.. .+++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999854 3899999999999999999974 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 75
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.3e-19 Score=143.54 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
...+|||+|||+++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|++||..+ +.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999999999999999999999999999999855 499999999999
Q ss_pred cCCC
Q 027167 176 ATPL 179 (227)
Q Consensus 176 a~~~ 179 (227)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-18 Score=119.05 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|.+|+++.+. ++++++||||+|.+.++|++|+. +.+.+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4557899999999999999999999999999999999986 58899999999999999999997 45599999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.+...+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865544
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=116.24 Aligned_cols=82 Identities=10% Similarity=0.242 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++| .|..|+++++ .+++++|||||+|.+.++|++|+. ++ .+.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 889999999999999999999998 54 89999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.+++..
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9987653
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=120.78 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC----CccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~----~~~~g~~l~V 173 (227)
..+..+|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|+..+ ..+.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999875 689999999999999999732 4799999999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.++.+++....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99998765543
No 79
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=121.98 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|+++++..+++++|||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998889999999999999999999997 55599999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98864
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=117.83 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 172 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~ 172 (227)
...++|||+|||+++++++|+ ++|++||.|.+|+++++..+ ++||||+|.+.++|++|+..+ ..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999998665 789999999999999999754 489999999
Q ss_pred EEecCCCCCCC
Q 027167 173 IDSATPLDDAG 183 (227)
Q Consensus 173 V~~a~~~~~~~ 183 (227)
|.+|.++..+.
T Consensus 84 V~~a~~~~~~~ 94 (96)
T 2dgx_A 84 VSLATGASGPS 94 (96)
T ss_dssp EEECCCSSCCC
T ss_pred EEEcCCCCCCC
Confidence 99998876543
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1e-18 Score=126.42 Aligned_cols=84 Identities=29% Similarity=0.363 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++++++|+++|++||.|..|++++++.++++++||||+|.+.++|++|+.. ...|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999974 4589999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.+++.
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988764
No 82
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=119.87 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEe-EEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeE----
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQ---- 170 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~---- 170 (227)
.....+|||+|||+++++++|+++|++||.|. +|++++++.++++++||||+|.+.++|++|+..+ ..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999889999999999999999999999754 4889998
Q ss_pred EEEEecCCCC
Q 027167 171 VAIDSATPLD 180 (227)
Q Consensus 171 l~V~~a~~~~ 180 (227)
|+|.+|.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=3.4e-18 Score=115.39 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecCCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 179 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~~~ 179 (227)
..+|||+|||+++++++|+++|++||.|..++++.+..++++++||||+|.+.++|++|+. +...+.|+.|+|.++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5799999999999999999999999999999999998899999999999999999999993 334999999999999874
No 84
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=120.52 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++|+++|+++|++||. .+|+|+.|. +++++|||||+|.+.++|++||. +.+.+.++.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 455789999999999999999999999994 599999996 89999999999999999999995 445899999999998
Q ss_pred CCCCC
Q 027167 177 TPLDD 181 (227)
Q Consensus 177 ~~~~~ 181 (227)
.+.+.
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86653
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=117.16 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCC-cccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~-~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
...+|||+|||.++++++|+++|++||.|.++.++.+..++. ++++|||+|.+.++|++|+. +...+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999877665 89999999999999999997 555999999999999
Q ss_pred CCCCC
Q 027167 177 TPLDD 181 (227)
Q Consensus 177 ~~~~~ 181 (227)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 86
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=117.32 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC----ccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~----~~~g~~l~V 173 (227)
..++.+|||+|||+++|+++|+++|++||.|.++.+++ .+++|||+|++.++|.+|+..++ .+.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45688999999999999999999999999999999986 47899999999999999997543 478999999
Q ss_pred EecCCCC
Q 027167 174 DSATPLD 180 (227)
Q Consensus 174 ~~a~~~~ 180 (227)
.|+++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=118.54 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE--------EEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~ 167 (227)
.....+|||+|||.++++++|+++|++||.|.. |+++.++.+++++|||||+|.+.++|++|+. +...+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 556899999999999999999999999999999 9999998999999999999999999999996 455999
Q ss_pred CeEEEEEecC
Q 027167 168 GQQVAIDSAT 177 (227)
Q Consensus 168 g~~l~V~~a~ 177 (227)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 88
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.6e-18 Score=116.15 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC----CccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~----~~~~g~~l~V 173 (227)
..+.++|||+|||+.+++++|+++|++||.|.+|.++++ ++||||+|.+.++|++|+..+ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999999875 789999999999999999743 3799999999
Q ss_pred EecCCCCCCC
Q 027167 174 DSATPLDDAG 183 (227)
Q Consensus 174 ~~a~~~~~~~ 183 (227)
.++.+++...
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999876554
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=9.3e-18 Score=116.52 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|+.. .+.+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34578999999999999999999999999999999864 4999999999999999974 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998876554
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3.7e-18 Score=121.40 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|.+|+++++..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999999889999999999999999999999754 489999999998
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 91
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=8.5e-18 Score=144.80 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
.+..+|||+|||+.+|+++|.++|++||.|+.|.|+.+..+++++|||||+|.+.++|++||..+ ..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999754 5999999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.++....
T Consensus 180 ~~~~~~~ 186 (437)
T 3pgw_S 180 RGRTVKG 186 (437)
T ss_pred CCCCCCC
Confidence 9876543
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=125.94 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE--EEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCC----ccCCe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSH----EICGQ 169 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~----~~~g~ 169 (227)
.....+|||+|||+++|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|.+|+. +.. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999976 99999998999999999999999 9999986 455 88999
Q ss_pred EEEEEecCCCCCC
Q 027167 170 QVAIDSATPLDDA 182 (227)
Q Consensus 170 ~l~V~~a~~~~~~ 182 (227)
.|.|.++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 93
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=118.39 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC----ccCCeEEEE
Q 027167 99 RIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 173 (227)
Q Consensus 99 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~----~~~g~~l~V 173 (227)
.+..+|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|++.++|..|+..++ .+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999875 5799999999999999997432 599999999
Q ss_pred EecCCCCCCC
Q 027167 174 DSATPLDDAG 183 (227)
Q Consensus 174 ~~a~~~~~~~ 183 (227)
.+|.++..-.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x4d_A 87 HLSQKYKRIK 96 (102)
T ss_dssp EEECCCTTSS
T ss_pred EECCCCCCCC
Confidence 9998765433
No 94
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=117.16 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE-EEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. .+.+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345789999999999999999999999999987 899998 8899999999999999999999974 4599999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.+++-
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 877654
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=120.18 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhccCCEeEEEeecCCCCC---CcccEEEEEecCHHHHHHHHhc--CCccCCe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRR--SHEICGQ 169 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~i~~~~d~~~~---~~~g~afV~f~~~~~a~~al~~--~~~~~g~ 169 (227)
....++|||+|||+++++++|+ ++|++||.|..|.++++..++ +++|||||+|.+.++|++|+.. .+.+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457899999999999999999 999999999999999987654 4569999999999999999974 4599999
Q ss_pred EEEEEecCCCCC
Q 027167 170 QVAIDSATPLDD 181 (227)
Q Consensus 170 ~l~V~~a~~~~~ 181 (227)
.|+|.+|.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998874
No 96
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.8e-18 Score=115.91 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|++.++ ++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999884 778999999999999999999974 4589999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.+....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9887654
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=2.7e-19 Score=123.72 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCC-eE
Q 027167 100 IGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICG-QQ 170 (227)
Q Consensus 100 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g-~~ 170 (227)
.+++|||+|||. ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++|+. +...+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999996 4559999 99
Q ss_pred EEEEecCCCC
Q 027167 171 VAIDSATPLD 180 (227)
Q Consensus 171 l~V~~a~~~~ 180 (227)
|+|.++.|++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998754
No 98
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=115.61 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.| +++.+ .++++++||||+|.+.++|++|+..++ .+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4568999999999999999999999999976 66666 678899999999999999999998554 89999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 99876543
No 99
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=121.10 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC----CccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~----~~~~g~~l~V 173 (227)
..+..+|||+|||+++|+++|+++|++||.|.+|+++++ ++||||+|++.++|.+|+..+ ..+.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999875 789999999999999999743 3799999999
Q ss_pred EecCCCCCCCC
Q 027167 174 DSATPLDDAGP 184 (227)
Q Consensus 174 ~~a~~~~~~~~ 184 (227)
.++.+++....
T Consensus 102 ~~a~~k~~~~~ 112 (119)
T 2ad9_A 102 QFSNHKELKTD 112 (119)
T ss_dssp EECSSSSCCCC
T ss_pred EEccCCCCCcc
Confidence 99998876543
No 100
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=116.68 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|.+|+++++.. +++++||||+|.+.++|++|+. +.+.+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45578999999999999999999999999999999999965 8899999999999999999997 45599999999999
Q ss_pred cCC
Q 027167 176 ATP 178 (227)
Q Consensus 176 a~~ 178 (227)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=117.04 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCC-EeEEEee-cCCCCCCcccEEEEEecCHHHHHHHHhcC----CccCCeEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 172 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~i~~~-~d~~~~~~~g~afV~f~~~~~a~~al~~~----~~~~g~~l~ 172 (227)
....+|||+|||+++++++|+++|++||. |.+|.++ .+..++++++||||+|.+.++|++|+..+ ..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 78888899999999999999999999754 488999999
Q ss_pred EEecCCCCCCC
Q 027167 173 IDSATPLDDAG 183 (227)
Q Consensus 173 V~~a~~~~~~~ 183 (227)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999887644
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=116.09 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--C--ccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H--EICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~--~~~g~~l~V 173 (227)
..+..+|||+|||+++++++|+++|++||.|.+|.++++ ++||||+|.+.++|.+|+..+ + .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999874 789999999999999999743 2 589999999
Q ss_pred EecCCCCCCC
Q 027167 174 DSATPLDDAG 183 (227)
Q Consensus 174 ~~a~~~~~~~ 183 (227)
.|+.++....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9999876654
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=5.9e-18 Score=121.41 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecCC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 178 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~~ 178 (227)
...+|||+|||.++|+++|+++|++||.|.+|.+++++.++++++||||+|.+.++|++|+. +.+.+.|+.|+|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 36799999999999999999999999999999999998899999999999999999999993 33489999999999987
Q ss_pred CCCC
Q 027167 179 LDDA 182 (227)
Q Consensus 179 ~~~~ 182 (227)
....
T Consensus 115 ~~~~ 118 (124)
T 2jwn_A 115 NMPG 118 (124)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5543
No 104
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=118.93 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++|+++|+++|++||.|.+|+++++.. +.++|||||+|.+.++|.+|+. +.+.+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3468999999999999999999999999999999999976 8899999999999999999997 4459999999999865
Q ss_pred C
Q 027167 178 P 178 (227)
Q Consensus 178 ~ 178 (227)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=116.76 Aligned_cols=83 Identities=30% Similarity=0.479 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|+.|+ .|.++.+..++++++||||+|.+.++|++|+. +.+.|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 67888888889999999999999999999997 45699999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++..++
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99877643
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=6.1e-18 Score=118.18 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+.+++++|+++|++||.|.+|+++.+. ++++++||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4568899999999999999999999999999999999997 89999999999999999999997 44599999999999
Q ss_pred cC
Q 027167 176 AT 177 (227)
Q Consensus 176 a~ 177 (227)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 107
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=113.28 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|.++++ ||||+|.+.++|++|+. +.+.+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 456789999999999999999999999999999999754 99999999999999997 44599999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++....+
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 998776544
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-19 Score=124.38 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecCC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 178 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~~ 178 (227)
...+|||+|||+++++++|+++|++||.|..|+++.+..+++++|||||+|.+.++|++|+. +.+.|.|+.|+|.++.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 46799999999999999999999999999999999998889999999999999999999993 34499999999999987
Q ss_pred CCCC
Q 027167 179 LDDA 182 (227)
Q Consensus 179 ~~~~ 182 (227)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 6543
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=127.36 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
...+|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+++++|||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999975 4599999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 110
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=117.67 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..+.++.+..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999998888888888999999999999999999999755 489999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.++.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 111
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=5.8e-18 Score=114.46 Aligned_cols=79 Identities=39% Similarity=0.754 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 177 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~ 177 (227)
..+..+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|+++......+.|+.|.|.+|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 456889999999999999999999999999999999886 789999999999999965544447789999999999
Q ss_pred CCCC
Q 027167 178 PLDD 181 (227)
Q Consensus 178 ~~~~ 181 (227)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8764
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=121.21 Aligned_cols=84 Identities=27% Similarity=0.512 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a 176 (227)
....+|||+|||+.+++++|+++|++||.|..|.+++++.++++++||||+|.+.++|++|+..+ ..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999888999999999999999999999744 5899999999999
Q ss_pred CCCCCC
Q 027167 177 TPLDDA 182 (227)
Q Consensus 177 ~~~~~~ 182 (227)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987654
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=123.41 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCE-eEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.| ..|+|+.|. +++++|||||+|.+.++|++||.. .+.|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3457899999999999999999999999999 889999997 899999999999999999999974 4599999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.+++
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98766
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.6e-18 Score=112.30 Aligned_cols=74 Identities=42% Similarity=0.719 Sum_probs=69.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
+|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|+. +.+.+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999997 445999999999875
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=2.2e-17 Score=118.48 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|+++.+. ++++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999997 889999999999999999999974 4589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
|.+.....+
T Consensus 111 a~~~~~~~~ 119 (124)
T 2kt5_A 111 VASQIDLEH 119 (124)
T ss_dssp ECCTTCCCC
T ss_pred eCCCCCCCC
Confidence 988765443
No 116
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=8e-19 Score=128.20 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++|+++|+++|++|| |++|+|+.|.. ++++|||||+|.+.++|++||. +.+.+.|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999965 8999999999999999999994 3458999999999988
Q ss_pred CCCC
Q 027167 178 PLDD 181 (227)
Q Consensus 178 ~~~~ 181 (227)
+++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=112.93 Aligned_cols=79 Identities=24% Similarity=0.556 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457899999999999999999999999999999996 469999999999999999744 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++....+
T Consensus 77 a~~~~~~~~ 85 (90)
T 2dnq_A 77 SKNKSKASS 85 (90)
T ss_dssp SSCCCCCCS
T ss_pred CCCCCCCCC
Confidence 998776543
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-17 Score=120.20 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..+++++++.++++++||||+|.+.++|++|+..++ .+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4568899999999999999999999999999999999998999999999999999999999997554 89999999998
Q ss_pred c
Q 027167 176 A 176 (227)
Q Consensus 176 a 176 (227)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=121.52 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
..+..+|||+|||+++|+++|+++|++||.|..+.+..+..++++++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999843322222236778999999999999999999754 589999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++..+.+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998876554
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=118.81 Aligned_cols=82 Identities=21% Similarity=0.452 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCC-CCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP-KRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~-~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++|| |.+|+++++. .+++++|||||+|.+.++|.+|+. +...+.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45678999999999999999999999999 9999999997 589999999999999999999993 33499999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 121
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=113.98 Aligned_cols=80 Identities=35% Similarity=0.683 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 178 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~ 178 (227)
....+|||+|||+++++++|+++|++||.|.+|+++++ +++||||+|.+.++|++++.....+.++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 34789999999999999999999999999999999876 7899999999999999876665578999999999998
Q ss_pred CCCCC
Q 027167 179 LDDAG 183 (227)
Q Consensus 179 ~~~~~ 183 (227)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 122
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=118.20 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC----CccCCeEEE
Q 027167 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 172 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~----~~~~g~~l~ 172 (227)
..++.+|||+|||++ +++++|+++|++||.|.+|.+++ +++||||+|.+.++|++|+..+ ..+.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999975 4789999999999999999743 369999999
Q ss_pred EEecCCCCCCC
Q 027167 173 IDSATPLDDAG 183 (227)
Q Consensus 173 V~~a~~~~~~~ 183 (227)
|.++.++....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998776544
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=112.74 Aligned_cols=75 Identities=39% Similarity=0.690 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC-CccCCeEEEEEec
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSA 176 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~-~~~~g~~l~V~~a 176 (227)
.+|||+|||+++++++|+++|++||.|..+.+++++.+++++|+|||+|.+.++|++|+..+ +.+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999999999888999999999999999999999755 5899999999987
No 124
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-17 Score=111.74 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc--CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V 173 (227)
.....+|||+|||+++++++|+++|++| |.|..|++. ++||||+|.+.++|++|+.. ...+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4567899999999999999999999999 999999874 56999999999999999974 45999999999
Q ss_pred EecCCCCCCC
Q 027167 174 DSATPLDDAG 183 (227)
Q Consensus 174 ~~a~~~~~~~ 183 (227)
.+++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=112.98 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccC--CeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEIC--GQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~--g~~l~V 173 (227)
..+..+|||+|||+++++++|+++|++||.|.+|.+.++ ++||||+|.+.++|++|+.. ...+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999999764 67999999999999999974 45888 999999
Q ss_pred EecCCCCCC
Q 027167 174 DSATPLDDA 182 (227)
Q Consensus 174 ~~a~~~~~~ 182 (227)
.++.+++.+
T Consensus 88 ~~a~~~~~~ 96 (97)
T 1why_A 88 DFAKSGPSS 96 (97)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999987653
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=115.70 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
....+|||+|||.++++++|+++|++||.|..|+++++ ++||||+|.+.++|++|+. +...+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999886 6899999999999999996 445999999999999
Q ss_pred CCCCCCCC
Q 027167 177 TPLDDAGP 184 (227)
Q Consensus 177 ~~~~~~~~ 184 (227)
.++....+
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4g_A 97 KESPDMTS 104 (109)
T ss_dssp CCCCSSCC
T ss_pred CCCCCCCC
Confidence 98876544
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=3.1e-18 Score=111.93 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEec
Q 027167 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (227)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~a 176 (227)
+|||+|||+++++++|+++|++||.|.++.++++..+++++|||||+|.+.++|++|+.. .+.+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988899999999999999999999974 45999999999875
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=115.33 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a 176 (227)
.+..+|||+|||+++++++|+++|++||.|.+++++.+..++.+++||||+|.+.++|++|+..++ .+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999998899999999999999999999997544 888888776654
Q ss_pred C
Q 027167 177 T 177 (227)
Q Consensus 177 ~ 177 (227)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-19 Score=127.83 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeE--------EEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG 168 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g 168 (227)
....+|||+|||.++++++|+++|++||.|.. |+++.++.++++++||||+|.+.++|++|+..+ ..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 999999888999999999999999999999754 58999
Q ss_pred eEEEEEecCCCCCCC
Q 027167 169 QQVAIDSATPLDDAG 183 (227)
Q Consensus 169 ~~l~V~~a~~~~~~~ 183 (227)
+.|+|.++.+++.+.
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999999876543
No 130
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=117.26 Aligned_cols=81 Identities=33% Similarity=0.597 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|.+|+++++. +.++|||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999874 3489999999999999999997 45589999999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=113.82 Aligned_cols=76 Identities=30% Similarity=0.584 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a~~~ 179 (227)
++|||+|||+++|+++|+++|++||.|.+|.++++ +++||||+|.+.++|++|+.. ...+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999887 789999999999999999974 45899999999999987
Q ss_pred CCC
Q 027167 180 DDA 182 (227)
Q Consensus 180 ~~~ 182 (227)
+..
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 744
No 132
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.1e-18 Score=117.04 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
....+|||+|||+++++++|+++|++||.|..+.++.+..++++++||||+|.++++|++|+. +.+.+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999988888888889999999999999999999997 455999999999987
Q ss_pred CC
Q 027167 177 TP 178 (227)
Q Consensus 177 ~~ 178 (227)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=115.38 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--Ccc--------C
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEI--------C 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~--------~ 167 (227)
.....+|||+|||.++++++|+++|++||.|..|+++++. ++.+++||||+|.+.++|++|+..+ ..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 8899999999999999999999744 466 5
Q ss_pred CeEEEEEecCCC
Q 027167 168 GQQVAIDSATPL 179 (227)
Q Consensus 168 g~~l~V~~a~~~ 179 (227)
++.|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999864
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=4.9e-18 Score=117.68 Aligned_cols=83 Identities=20% Similarity=0.499 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 178 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~ 178 (227)
....+|||+|||+++++++|+++|++||.|..|+++++. +++++|||||+|.+.++|++|+.+.+.+.|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 346899999999999999999999999999999999997 8999999999999999999999966799999999999987
Q ss_pred CCCC
Q 027167 179 LDDA 182 (227)
Q Consensus 179 ~~~~ 182 (227)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 7654
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=117.54 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++|+++|+++|++| .|..|+|+.|.. ++++|||||+|.+.++|++||. +.+.+.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 899999999965 8899999999999999999995 4459999999999886
Q ss_pred CC
Q 027167 178 PL 179 (227)
Q Consensus 178 ~~ 179 (227)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=113.98 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCe
Q 027167 98 QRIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQ 169 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~ 169 (227)
....++|||+|||+.+ |+++|+++|++||.|.+|.+++ .+++++|||||+|.+.++|++|+..+ ..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 7899999999999999999983 67889999999999999999999854 499998
Q ss_pred -EEEEEecCCCCC
Q 027167 170 -QVAIDSATPLDD 181 (227)
Q Consensus 170 -~l~V~~a~~~~~ 181 (227)
.|+|.++.+.+.
T Consensus 90 ~~l~V~~a~~~~k 102 (105)
T 2nlw_A 90 HTFRVNLFTDFDK 102 (105)
T ss_dssp CEEEEECSCCCCC
T ss_pred ceEEEEEcchHhh
Confidence 999999987654
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=112.41 Aligned_cols=79 Identities=27% Similarity=0.580 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..|++.++ ++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999864 78999999999999999964 4589999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9987654
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=109.84 Aligned_cols=78 Identities=28% Similarity=0.476 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|..|+++++ ||||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999754 99999999999999997 45589999999999
Q ss_pred cCCCCCCC
Q 027167 176 ATPLDDAG 183 (227)
Q Consensus 176 a~~~~~~~ 183 (227)
+.++..+.
T Consensus 78 a~~~~~~~ 85 (90)
T 2dnp_A 78 STKGQKKS 85 (90)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 99875543
No 139
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.3e-17 Score=115.90 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
....+|||+|||+++++++|+++|++|| .|..+.+..+ +++|||||+|.+.++|++||..+ .++.|+.|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4578999999999999999999999999 8999998643 37899999999999999999754 499999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+...+.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 976543
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.7e-18 Score=116.26 Aligned_cols=80 Identities=29% Similarity=0.580 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~~~ 179 (227)
.+|||+|||.++++++|+++|++||.|.+|.++++..+++++|||||+|.+.+ |++|+..+ ..+.|+.|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999889999999999999999 99999754 4899999999999887
Q ss_pred CCC
Q 027167 180 DDA 182 (227)
Q Consensus 180 ~~~ 182 (227)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.7e-18 Score=122.29 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V 173 (227)
.....+|||+|||+++|+++|+++|++||. |.+|+|++|.. ++++|||||+|.+.++|++||. +...+.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 345789999999999999999999999998 88999999976 9999999999999999999998 334999999999
Q ss_pred EecCCCC
Q 027167 174 DSATPLD 180 (227)
Q Consensus 174 ~~a~~~~ 180 (227)
.++.+++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987554
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-18 Score=117.76 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++|+. +...+.|+.|+|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999998887 667776778899999999999999999997 3348999999999999
Q ss_pred CCCCC
Q 027167 178 PLDDA 182 (227)
Q Consensus 178 ~~~~~ 182 (227)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 143
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=117.24 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQV 171 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l 171 (227)
..+..+|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|+..+ ..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998854 4678999999999999999999754 48999999
Q ss_pred EEEecCCCCC
Q 027167 172 AIDSATPLDD 181 (227)
Q Consensus 172 ~V~~a~~~~~ 181 (227)
+|.||.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=1e-16 Score=112.59 Aligned_cols=78 Identities=26% Similarity=0.519 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~ 174 (227)
.....+|||+|||++ +++++|+++|++||.|..|.+ +++||||+|.+.++|++|+. +...+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344689999999999 999999999999999999998 46899999999999999996 4458999999999
Q ss_pred ecCCCCCCC
Q 027167 175 SATPLDDAG 183 (227)
Q Consensus 175 ~a~~~~~~~ 183 (227)
++.++...+
T Consensus 96 ~a~~~~~~~ 104 (110)
T 1wf1_A 96 MAGEPKPDR 104 (110)
T ss_dssp ESCCCCSCC
T ss_pred ECCCCCCCC
Confidence 998655443
No 145
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=118.66 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V 173 (227)
.....+|||+|||+++|+++|+++|+.||. |..|+|+.+.. ++++|||||+|.+.++|++||. +.+.+.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345789999999999999999999999998 89999999966 8899999999999999999997 344999999999
Q ss_pred EecCCCC
Q 027167 174 DSATPLD 180 (227)
Q Consensus 174 ~~a~~~~ 180 (227)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 146
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=5.5e-17 Score=107.72 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~a~ 177 (227)
.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|+..++ .+.|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 68999999999999999998554 9999999999984
No 147
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.4e-17 Score=113.66 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+. +...+.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999997 5799999999999999997 45589999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9987654
No 148
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=106.46 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC---CccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~---~~~~g~~l~V~ 174 (227)
.....+|||+|||.++++++|+++|++||.|..|++++ +++||||+|.+.++|++|+..+ ..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45678999999999999999999999999999999987 3789999999999999999754 48999999999
Q ss_pred ecC
Q 027167 175 SAT 177 (227)
Q Consensus 175 ~a~ 177 (227)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 149
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=119.29 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||. +.+.|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4457899999999999999999999999999886666666789999999999999999999997 334999999999998
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
.+++
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 150
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=114.78 Aligned_cols=81 Identities=25% Similarity=0.446 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCC---CCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~---~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~ 175 (227)
....+|||+|||+++|+++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++||..++.++|+.+.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3478999999999999999999999999999 888888776 689999999999999999999988888999888876
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
+.+..
T Consensus 85 ~~~~~ 89 (114)
T 2dnl_A 85 SPTIK 89 (114)
T ss_dssp CSSSC
T ss_pred CCCcC
Confidence 65443
No 151
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=110.35 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|. +.++.+ ++++||||+|.+.++|++|+.. ...+.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999986 666543 4789999999999999999964 4599999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.+++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998754
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.8e-17 Score=118.85 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEe--EEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~ 174 (227)
.....+|||+|||+++|+++|+++|++| .|. +|+|+.|+. ++++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3457899999999999999999999999 677 899999976 99999999999999999999974 358999999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
.+.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=107.50 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEecC
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 177 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a~ 177 (227)
....+|||+|||+++++++|+++|++||.|.+| +.+..+++ ||||+|.+.++|++|+. +.+.+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999987 55545554 99999999999999998 3349999999999988
Q ss_pred CCCCCC
Q 027167 178 PLDDAG 183 (227)
Q Consensus 178 ~~~~~~ 183 (227)
+++...
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 766544
No 154
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.5e-17 Score=112.85 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~ 174 (227)
..+..+|||+|||+ ++++++|+++|++||.|.+|.+. ++||||+|.+.++|++|+.. ...+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999994 57999999999999999974 458899999999
Q ss_pred ecCCCCCCCC
Q 027167 175 SATPLDDAGP 184 (227)
Q Consensus 175 ~a~~~~~~~~ 184 (227)
++.++..+..
T Consensus 79 ~a~~~~~~~~ 88 (96)
T 2kvi_A 79 VSSSNARPQF 88 (96)
T ss_dssp EEECCCC---
T ss_pred EcCcCCCCCC
Confidence 9988765443
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-16 Score=105.94 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~ 175 (227)
.....+|||+|| ++|+++|+++|++||.|..|.+.+ +++||||+|.+.++|++|+..+ ..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 899999999999999999999853 6889999999999999999754 489999999999
Q ss_pred cCCCCCCCC
Q 027167 176 ATPLDDAGP 184 (227)
Q Consensus 176 a~~~~~~~~ 184 (227)
+.++....+
T Consensus 84 a~~~~~~~~ 92 (97)
T 1x5p_A 84 ARKQPMLDS 92 (97)
T ss_dssp CSSCCCCCS
T ss_pred CCCCCCCCC
Confidence 998776543
No 156
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.8e-17 Score=109.16 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCC-EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cC-CccCCeEEEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RS-HEICGQQVAID 174 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~-~~~~g~~l~V~ 174 (227)
....+|||+|||+++|+++|+++|++||. |..+.+. +++||||+|.+.++|++|+. +. ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999998 6655553 47899999999999999996 55 67999999999
Q ss_pred ecCCCCCCC
Q 027167 175 SATPLDDAG 183 (227)
Q Consensus 175 ~a~~~~~~~ 183 (227)
++.++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876554
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=8e-17 Score=110.22 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..++ .+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999987766 2567789999999999999999998554 89999999999
Q ss_pred cCCCCCC
Q 027167 176 ATPLDDA 182 (227)
Q Consensus 176 a~~~~~~ 182 (227)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9887653
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=118.59 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCE----eEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 174 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~ 174 (227)
...+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|++||.. .+.+.++.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46899999999999999999999999975 58999998 5899999999999999999999974 458999999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
.+.+++
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886554
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=2.2e-16 Score=108.35 Aligned_cols=75 Identities=23% Similarity=0.531 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
.....+|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..+ ..+.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45688999999998 99999999999999999999983 689999999999999999744 48899999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998754
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.8e-17 Score=114.77 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeE-----E
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQ-----V 171 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~-----l 171 (227)
....+|||+|||+++++++|+++|++||.|.+|.|+.+ +||||+|.+.++|++||..+ .+|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999875 79999999999999999754 4889988 7
Q ss_pred EEEecCCCCC
Q 027167 172 AIDSATPLDD 181 (227)
Q Consensus 172 ~V~~a~~~~~ 181 (227)
+|..+.++..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 8887776543
No 161
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=107.93 Aligned_cols=71 Identities=21% Similarity=0.420 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCe-EE
Q 027167 101 GKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQ-QV 171 (227)
Q Consensus 101 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~-~l 171 (227)
+++|||+|||..+ ++++|+++|++||.|.+|.+++ .+++++|||||+|.+.++|++|+..+ ..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7899999999999999999883 67889999999999999999999855 488898 77
Q ss_pred EE
Q 027167 172 AI 173 (227)
Q Consensus 172 ~V 173 (227)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=116.11 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCC---EeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 173 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V 173 (227)
.....+|||+|||+++|+++|+++|+.||. |..|+|+.+.. ++++|||||+|.+.++|++||. +.+.+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 446789999999999999999999999998 89999999976 8999999999999999999997 344889999999
Q ss_pred EecCCCC
Q 027167 174 DSATPLD 180 (227)
Q Consensus 174 ~~a~~~~ 180 (227)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987654
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.7e-16 Score=124.27 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a 176 (227)
.+..+|||+|||+++|+++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|++|+.. ...+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3567999999999999999999999999999999999999999999999999999999999974 45889999999998
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.8e-17 Score=111.34 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
....+|||+|||.++++++|+++|++||.|.+|++.+ +++||||+|.+.++|++|+. +...+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999974 57899999999999999996 445899999999999
Q ss_pred CCC
Q 027167 177 TPL 179 (227)
Q Consensus 177 ~~~ 179 (227)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=7e-17 Score=110.69 Aligned_cols=81 Identities=30% Similarity=0.498 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQV 171 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l 171 (227)
..+..+|||+|||.++++++|+ ++|++||.|..|.+.+ ++.+++||||+|.+.++|.+|+. +...+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999999874 45678999999999999999997 4558999999
Q ss_pred EEEecCCCCC
Q 027167 172 AIDSATPLDD 181 (227)
Q Consensus 172 ~V~~a~~~~~ 181 (227)
+|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988653
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=108.72 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEE-EeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i-~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
....+|||+|||+++++++|+++|++||.|.+| .++.++.++ .|||+|.+.++|++|+. +...+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 488775544 39999999999999997 45599999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.+++.
T Consensus 89 a~~~~~ 94 (96)
T 2e44_A 89 IPDEMA 94 (96)
T ss_dssp CCCCCS
T ss_pred cCcccc
Confidence 998854
No 167
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.6e-16 Score=112.37 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++++++|+++|++||.|.+|.++++ +.++|||||+|.+.++|.+|+. +...+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999876 3458999999999999999997 44599999999999
Q ss_pred cCCCCC
Q 027167 176 ATPLDD 181 (227)
Q Consensus 176 a~~~~~ 181 (227)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 987543
No 168
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=3.7e-16 Score=118.89 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|++|+..+ ..+.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 8889999999999999999999854 48999999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
+|.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987653
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=3.9e-16 Score=120.06 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++|+++|+++|++||.|.+|.++++..+++++|||||+|.+.++|.+|+.. .+.+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34578999999999999999999999999999999999988999999999999999999999974 45899999999998
Q ss_pred CCCCCC
Q 027167 177 TPLDDA 182 (227)
Q Consensus 177 ~~~~~~ 182 (227)
.++...
T Consensus 90 ~~~~~~ 95 (196)
T 1l3k_A 90 VSREDS 95 (196)
T ss_dssp CC----
T ss_pred cCcccc
Confidence 876543
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=109.88 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--cc-----CCe
Q 027167 99 RIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-----CGQ 169 (227)
Q Consensus 99 ~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~-----~g~ 169 (227)
.++.+||| +||++++++++|+++|++||.|.+|.++. .++||||+|.+.++|++|+..++ ++ .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 77999999999999999999999998865 37899999999999999997554 66 588
Q ss_pred EEEEEecCCCCCCCCC
Q 027167 170 QVAIDSATPLDDAGPS 185 (227)
Q Consensus 170 ~l~V~~a~~~~~~~~~ 185 (227)
+|.|.++...+...++
T Consensus 97 ~l~v~~a~~~p~~~~~ 112 (114)
T 2cq2_A 97 TLYLNFVEKVQWSGPS 112 (114)
T ss_dssp ECEEEEESCCCCSSCC
T ss_pred EEEEEecccCcccCCC
Confidence 9999999877766553
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.7e-16 Score=118.97 Aligned_cols=81 Identities=33% Similarity=0.653 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEEEecCCC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 179 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V~~a~~~ 179 (227)
.+.+|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|+.+.+.+.|+.|.|.++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 36799999999999999999999999999999999998899999999999999999999999888999999999998765
Q ss_pred C
Q 027167 180 D 180 (227)
Q Consensus 180 ~ 180 (227)
.
T Consensus 82 ~ 82 (167)
T 2cjk_A 82 D 82 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.8e-16 Score=115.83 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~ 178 (227)
+.+|||+|||+++++++|+++|+.||.|.+++++++..+++++|+|||+|.+.++|.+|+. +...+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998899999999999999999999997 45599999999999987
Q ss_pred CCC
Q 027167 179 LDD 181 (227)
Q Consensus 179 ~~~ 181 (227)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=5.2e-16 Score=116.41 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~ 177 (227)
++.+|||+|||+++++++|+++|++||.|.+|+++++..+++++|||||+|.+.++|.+|+. +...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36899999999999999999999999999999999998889999999999999999999996 4558999999999998
Q ss_pred CCCCC
Q 027167 178 PLDDA 182 (227)
Q Consensus 178 ~~~~~ 182 (227)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76643
No 174
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=111.51 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l~V~~a~ 177 (227)
..++|||+|||+++++++|+++|++||.|..|.+++ +++||||+|.+.++|++|+.. ...+.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999875 578999999999999999974 458999999999987
Q ss_pred CCC
Q 027167 178 PLD 180 (227)
Q Consensus 178 ~~~ 180 (227)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.8e-16 Score=110.58 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=67.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecC----HHH----HHHHHh----cCCc
Q 027167 102 KKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE----EVV----ADRVSR----RSHE 165 (227)
Q Consensus 102 ~~l~V~nL----p~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~----~~~----a~~al~----~~~~ 165 (227)
.+|||+|| |+.+++++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+. +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 677876 4459
Q ss_pred cCCeEEEEEecC
Q 027167 166 ICGQQVAIDSAT 177 (227)
Q Consensus 166 ~~g~~l~V~~a~ 177 (227)
|.|+.|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 176
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=117.52 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEE--------EeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccC
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV--------YVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i--------~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~ 167 (227)
..+..+|||+|||+++|+++|+++|++||.|..+ ++. .+++++|||||+|.+.++|.+|+.. ...+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4457899999999999999999999999988763 332 4677899999999999999999974 45999
Q ss_pred CeEEEEEecCCCCCC
Q 027167 168 GQQVAIDSATPLDDA 182 (227)
Q Consensus 168 g~~l~V~~a~~~~~~ 182 (227)
|+.|.|.+|.+...+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999876544
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.2e-15 Score=113.49 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCC--eEEEEEe
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAIDS 175 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g--~~l~V~~ 175 (227)
...+|||+||++.+|+++|+++|++||.|.+|.+..+. +++||||+|.+.++|++|+..++ .|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 35678999999999999999999999999999997542 57899999999999999998654 7865 9999999
Q ss_pred cCCCC
Q 027167 176 ATPLD 180 (227)
Q Consensus 176 a~~~~ 180 (227)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99875
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.3e-15 Score=109.31 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccE-EEEEecCHHHHHHHHhcC--CccCC--eEEEEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRS--HEICG--QQVAID 174 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~-afV~f~~~~~a~~al~~~--~~~~g--~~l~V~ 174 (227)
.-.+|||+||++.+|+++|+++|++||.|.+|.+..+ .+++ |||+|.+.++|++|+..+ ..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456789999999999999999999999999998764 3677 999999999999999754 58887 899999
Q ss_pred ecCCCCC
Q 027167 175 SATPLDD 181 (227)
Q Consensus 175 ~a~~~~~ 181 (227)
|++++.-
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9998753
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=101.27 Aligned_cols=73 Identities=18% Similarity=0.372 Sum_probs=62.8
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhccC-CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeE
Q 027167 99 RIGKK-IFVGRLPQEATAED----LRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQ 170 (227)
Q Consensus 99 ~~~~~-l~V~nLp~~~t~~~----l~~~F~~~G-~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~ 170 (227)
++..| |||+|||+.+++++ |+++|++|| +|.+| ++ |+|||.|.+.++|.+|++++ .++.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 558999995 99888 22 89999999999999999754 5999999
Q ss_pred EEEEecCCCCC
Q 027167 171 VAIDSATPLDD 181 (227)
Q Consensus 171 l~V~~a~~~~~ 181 (227)
|+|.+|+.+..
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987754
No 180
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.2e-15 Score=102.65 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~ 177 (227)
...+|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|+..+ ..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999885 37899999999999999999754 48999999999986
Q ss_pred CCC
Q 027167 178 PLD 180 (227)
Q Consensus 178 ~~~ 180 (227)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=8.3e-15 Score=104.56 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=63.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccE-EEEEecCHHHHHHHHhcC--CccCC--eEEEEEec
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRS--HEICG--QQVAIDSA 176 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~-afV~f~~~~~a~~al~~~--~~~~g--~~l~V~~a 176 (227)
..|||+||++.+|+++|+++|++||.|.+|.+... .|| |||+|.+.++|..|+..+ .+|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999998653 276 999999999999999754 58877 69999999
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9875
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=3.3e-15 Score=116.26 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 100 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 100 ~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
.+.+|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++||. +...+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999886 57999999999999999997 455999999999998
Q ss_pred CCCC
Q 027167 177 TPLD 180 (227)
Q Consensus 177 ~~~~ 180 (227)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=6.1e-15 Score=113.68 Aligned_cols=78 Identities=15% Similarity=0.344 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC-CccCCeEEEEEecCCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPL 179 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~-~~~~g~~l~V~~a~~~ 179 (227)
..+|||+|||+++|+++|+++|++||.|..|+++++. +++++|||||+|.+.++|.+|+... +.+.|+.|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 5799999999999999999999999999999999985 5889999999999999999999743 4899999999987754
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.4e-15 Score=110.43 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCCC
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPL 179 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~~ 179 (227)
.+|||+|||.++|+++|+++|++||.|.+|+++++. +++++++|||+|.+.++|.+|+. +...+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999985 46789999999999999999996 455999999999999876
Q ss_pred CC
Q 027167 180 DD 181 (227)
Q Consensus 180 ~~ 181 (227)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=5.2e-15 Score=115.41 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecCC
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 178 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~~ 178 (227)
..+|||+|||.++|+++|+++|++||.|.+|+++++..++++++||||+|.+.++|.+|+. +...+.|+.|.|.++.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 6799999999999999999999999999999999998899999999999999999999997 44589999999998776
Q ss_pred CC
Q 027167 179 LD 180 (227)
Q Consensus 179 ~~ 180 (227)
..
T Consensus 108 ~~ 109 (216)
T 2qfj_A 108 IG 109 (216)
T ss_dssp CG
T ss_pred cc
Confidence 54
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=6e-15 Score=105.26 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a 176 (227)
....+|||+|| ++|+++|+++|++||.|.+|.+. ++++||||+|.+.++|++|+. +...+.|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999986 368999999999999999996 455899999999999
Q ss_pred CCCCCCC
Q 027167 177 TPLDDAG 183 (227)
Q Consensus 177 ~~~~~~~ 183 (227)
.++....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9876544
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.2e-14 Score=101.02 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhccCCEeEEEeecCCCC-CCcccEEEEEecCHHHHHHHHhc--CCccCCeE
Q 027167 99 RIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRR--SHEICGQQ 170 (227)
Q Consensus 99 ~~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~i~~i~~~~d~~~-~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~ 170 (227)
.++.+|+|.||.. +-++++|+++|++||.|.+|.|++++.+ ++++|++||+|.+.++|.+|+.. +..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2378999999999999999999998654 67899999999999999999974 45999999
Q ss_pred EEEEecCC
Q 027167 171 VAIDSATP 178 (227)
Q Consensus 171 l~V~~a~~ 178 (227)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=1.3e-14 Score=97.12 Aligned_cols=70 Identities=23% Similarity=0.435 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--Cc
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HE 165 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~ 165 (227)
....+|||+|||+++++++|+++|++| | .|.++++.++ ++||||+|.+.++|.+|+ .+ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 347899999999999999999999999 8 8999999764 789999999999999999 54 48
Q ss_pred cCCeEEEEEe
Q 027167 166 ICGQQVAIDS 175 (227)
Q Consensus 166 ~~g~~l~V~~ 175 (227)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 189
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-13 Score=94.76 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCCccCCeEEEE
Q 027167 101 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAI 173 (227)
Q Consensus 101 ~~~l~V~nLp-------~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~g~~l~V 173 (227)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+. +++|||||+|.+.++|++|+..++.+.++.|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 4566665433 4689999999999999999999983 478999999999999999999888889999999
Q ss_pred EecCCCCCCC
Q 027167 174 DSATPLDDAG 183 (227)
Q Consensus 174 ~~a~~~~~~~ 183 (227)
.|+.+++...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T 2d9o_A 85 SWLEGQPQDA 94 (100)
T ss_dssp ECSSCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=1.6e-14 Score=108.89 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCC--CcccEEEEEecCHHHHHHHHhcCC--ccC---CeEEEE
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT--GHRGFGFVTFAEEVVADRVSRRSH--EIC---GQQVAI 173 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~--~~~g~afV~f~~~~~a~~al~~~~--~~~---g~~l~V 173 (227)
..+|||+|||+++|+++|+++|++||.|.+|+++++..++ +++|||||+|.+.++|++|+..++ .+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5799999999999999999999999999999999998776 789999999999999999997443 333 677888
Q ss_pred EecCCCCC
Q 027167 174 DSATPLDD 181 (227)
Q Consensus 174 ~~a~~~~~ 181 (227)
.++.++..
T Consensus 83 ~~~~~~~~ 90 (175)
T 3nmr_A 83 KPADSEKN 90 (175)
T ss_dssp EECGGGCC
T ss_pred cccccccc
Confidence 88776544
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=4.2e-14 Score=114.94 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEE
Q 027167 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQV 171 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l 171 (227)
..++++|||+|||+++|+++|+ ++|++||.|.+|++.+ +++++|||||+|.+.++|.+|+..+ ..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568899999999999999976 8999999999999886 5778999999999999999999644 58999999
Q ss_pred EEEecCCCC
Q 027167 172 AIDSATPLD 180 (227)
Q Consensus 172 ~V~~a~~~~ 180 (227)
+|.++.++.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997655
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.5e-14 Score=114.36 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--Ccc
Q 027167 98 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEI 166 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~ 166 (227)
.....+|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|+..+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 7999999999999999999986 4899999999999999999754 477
Q ss_pred ------------CCeEEEEEecCCCCCC
Q 027167 167 ------------CGQQVAIDSATPLDDA 182 (227)
Q Consensus 167 ------------~g~~l~V~~a~~~~~~ 182 (227)
.|+.|.|.||.+.+.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 7999999999877654
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-13 Score=95.85 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--C
Q 027167 98 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H 164 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~ 164 (227)
..++.+|+|.||..... +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|++|+..+ .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45688999999954432 6899999999999999966 443 27899999999999999999755 4
Q ss_pred ccCCeEEEEEecCCCCCCC
Q 027167 165 EICGQQVAIDSATPLDDAG 183 (227)
Q Consensus 165 ~~~g~~l~V~~a~~~~~~~ 183 (227)
.+.|+.|+|.++.++...+
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 8999999999998876543
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=5.1e-14 Score=111.28 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEE
Q 027167 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 174 (227)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~ 174 (227)
.....+|||+|||+ ++++++|+++|++||.|.+|+++++. ++||||+|.+.++|++|+. +...+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999873 7899999999999999996 4558999999999
Q ss_pred ecCCCC
Q 027167 175 SATPLD 180 (227)
Q Consensus 175 ~a~~~~ 180 (227)
++.++.
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998763
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=9.4e-14 Score=107.05 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEecC
Q 027167 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 177 (227)
Q Consensus 101 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~a~ 177 (227)
+++|||+|||+ ++++++|+++|++||.|.+|+++++. +|||||+|.+.++|++|+. +...+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999999873 7899999999999999996 4558999999999998
Q ss_pred CCC
Q 027167 178 PLD 180 (227)
Q Consensus 178 ~~~ 180 (227)
++.
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=2.2e-14 Score=108.40 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCCeEEEEEec
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 176 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g~~l~V~~a 176 (227)
.....+|||+|||+++|+++|+++|..||.+.. .++.+..+++++|||||+|.+.++|++|++ +...+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 456889999999999999999999999997665 334444667789999999999999999995 344899999999999
Q ss_pred CCCCCC
Q 027167 177 TPLDDA 182 (227)
Q Consensus 177 ~~~~~~ 182 (227)
.++...
T Consensus 89 ~~~~~~ 94 (175)
T 1fje_B 89 KGRDSK 94 (175)
T ss_dssp CCSSCS
T ss_pred CCcccc
Confidence 876543
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=4.2e-13 Score=108.08 Aligned_cols=75 Identities=29% Similarity=0.582 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEEEEe
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 175 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~V~~ 175 (227)
.....+|||+|||+++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|+. +...+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45578999999999999999999999999999999976 37899999999999999996 45689999999999
Q ss_pred cCC
Q 027167 176 ATP 178 (227)
Q Consensus 176 a~~ 178 (227)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=5.4e-13 Score=92.61 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhccCCEeEEEeecCCCC--CCcccEEEEEecCHHHHHHHHhcC--C
Q 027167 99 RIGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKDPKR--TGHRGFGFVTFAEEVVADRVSRRS--H 164 (227)
Q Consensus 99 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~i~~~~d~~~--~~~~g~afV~f~~~~~a~~al~~~--~ 164 (227)
.++..|.|.|+ |..+. +++|+++|++||.|.+|.|+++..+ ++++|++||+|.+.++|.+|+..+ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33443 3689999999999999999988654 357899999999999999999754 5
Q ss_pred ccCCeEEEEEecCC
Q 027167 165 EICGQQVAIDSATP 178 (227)
Q Consensus 165 ~~~g~~l~V~~a~~ 178 (227)
.+.|+.|+|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=2.4e-12 Score=98.86 Aligned_cols=76 Identities=20% Similarity=0.416 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~ 167 (227)
...+|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|++|+. +...+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 36899999999999999999999999 5 666776643 58999999999999999993 334899
Q ss_pred CeEEEEEecCCCCC
Q 027167 168 GQQVAIDSATPLDD 181 (227)
Q Consensus 168 g~~l~V~~a~~~~~ 181 (227)
|+.|.|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 77 GQSLKIRRPHDYQP 90 (198)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CceEEEeCCCCCCC
Confidence 99999999887644
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=1.2e-12 Score=98.30 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc----C-------CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccC
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~ 167 (227)
...+|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.++++|++|+. +...+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 36799999999999999999999999 6 777887765 47899999999999999993 345899
Q ss_pred CeEEEEEecCCCCC
Q 027167 168 GQQVAIDSATPLDD 181 (227)
Q Consensus 168 g~~l~V~~a~~~~~ 181 (227)
|+.|.|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP 90 (172)
T ss_dssp TEECEEECCSSCCC
T ss_pred CceeeecCCcccCC
Confidence 99999998776543
No 201
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.39 E-value=2e-13 Score=96.46 Aligned_cols=42 Identities=21% Similarity=0.501 Sum_probs=37.7
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+.+||||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 458999999999999999999 689999999999999876543
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.4e-13 Score=94.27 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=59.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCccCCeEE
Q 027167 106 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQV 171 (227)
Q Consensus 106 V~nLp~~~t~~~l~~~F------------~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~~g~~l 171 (227)
+.+||+.+++++|++.| ++||.|.+|.|+++. +++++|||||+|.+.++|++|+.. +..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 999999999999884 478899999999999999999974 459999999
Q ss_pred EEEec
Q 027167 172 AIDSA 176 (227)
Q Consensus 172 ~V~~a 176 (227)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.4e-12 Score=92.32 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHhccCCEeEEEeecCCC----CCCcccEEEEEecCHHHHHHHHhcC--CccCC
Q 027167 100 IGKKIFVGRLPQ--E---ATAEDLRRYFSRFGRILDVYVPKDPK----RTGHRGFGFVTFAEEVVADRVSRRS--HEICG 168 (227)
Q Consensus 100 ~~~~l~V~nLp~--~---~t~~~l~~~F~~~G~i~~i~~~~d~~----~~~~~g~afV~f~~~~~a~~al~~~--~~~~g 168 (227)
++.+|+|.|+-. + -.++||++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..+ ..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999832 2 24689999999999999999998754 3567899999999999999999754 49999
Q ss_pred eEEEEEecCC
Q 027167 169 QQVAIDSATP 178 (227)
Q Consensus 169 ~~l~V~~a~~ 178 (227)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=9.6e-12 Score=103.33 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=62.2
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--cc---CCe-
Q 027167 98 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQ- 169 (227)
Q Consensus 98 ~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~---~g~- 169 (227)
..++.+|||+| |+..+|+++|+++|++||+|.+|.+.+ ++|||||+|.+.++|++|++.++ ++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999998 578999999999999999999988854 47899999999999999998654 44 355
Q ss_pred -EEEEEecC
Q 027167 170 -QVAIDSAT 177 (227)
Q Consensus 170 -~l~V~~a~ 177 (227)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778874
No 205
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=82.91 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHh---cCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~---~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|+.+||||||+|.+.++|++||. ++..++|++|.|+++.++...
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 57899999999999999999999999993 345799999999999887543
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=7.3e-11 Score=82.88 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc--CCcc
Q 027167 99 RIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEI 166 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~--~~~~ 166 (227)
.++.+|.|.|+=... .++||+++|++||.|.+|.|.++. .+|++||+|.+.++|.+|+.. +..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457788898883221 235889999999999999997762 589999999999999999974 4599
Q ss_pred CCeEEEEEecCC
Q 027167 167 CGQQVAIDSATP 178 (227)
Q Consensus 167 ~g~~l~V~~a~~ 178 (227)
.|+.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999754
No 207
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=84.55 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=42.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
|++|+.||+++|||||+|.+.++|++|+ +++..|+|++|.|+++.|
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4678999999999999999999999999 689999999999999865
No 208
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=82.55 Aligned_cols=46 Identities=28% Similarity=0.520 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCc----eeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTH----ELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~----~~~gr~i~v~~~~~ 46 (227)
|++|+.||++||||||+|.+.++|++|| +++. .|+||+|.|++|.+
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 5789999999999999999999999999 4553 69999999999864
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3.5e-10 Score=79.73 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecC-HHHHHHHHhcC----CccCCeE
Q 027167 97 SQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSRRS----HEICGQQ 170 (227)
Q Consensus 97 ~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~-~~~a~~al~~~----~~~~g~~ 170 (227)
....+..|||+||+.+ +++++|+++|++||.|.+|.+.++.. .|||.|.+ .++|..|+.++ ..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3567899999999999 99999999999999999999988743 59999999 78898888754 2788888
Q ss_pred EEEEec
Q 027167 171 VAIDSA 176 (227)
Q Consensus 171 l~V~~a 176 (227)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 877654
No 210
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.4e-10 Score=79.79 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR 52 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~~~~ 52 (227)
|++|+.|++++|||||+|.+.++|++||.+++.|+|+.|.|+++.++.....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDS 98 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCCC
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCCC
Confidence 3578889999999999999999999999889999999999999988766443
No 211
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.10 E-value=2.8e-11 Score=81.44 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.||+++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 4578899999999999999999999999 689999999999999877643
No 212
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.10 E-value=8.2e-11 Score=82.23 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.|+++||||||+|.+.++|++|| +++..|+|+.|.|+++...
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4678999999999999999999999999 6899999999999998654
No 213
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.9e-10 Score=74.35 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCC
Q 027167 98 QRIGKKIFVGRLP----QEATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG 168 (227)
Q Consensus 98 ~~~~~~l~V~nLp----~~~t~----~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g 168 (227)
.+++.||+|.-.+ .++-. .+|.+.|++||.|..+++..| .+||+|.+.++|.+|+. ++.++.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCC
Confidence 4568899998776 23434 678999999999999999887 28999999999999997 4459999
Q ss_pred eEEEEEecCCC
Q 027167 169 QQVAIDSATPL 179 (227)
Q Consensus 169 ~~l~V~~a~~~ 179 (227)
+.|+|..++|.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998864
No 214
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=79.38 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+++|+.+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 3578889999999999999999999999 6899999999999999887654
No 215
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.1e-10 Score=78.36 Aligned_cols=50 Identities=36% Similarity=0.630 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence 4678899999999999999999999999 6899999999999999877553
No 216
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.7e-10 Score=77.27 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.++.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++...
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 4678899999999999999999999999 5899999999999999877543
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=2.1e-10 Score=79.03 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=45.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 4678889999999999999999999999 7889999999999999876543
No 218
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.06 E-value=1.9e-10 Score=75.88 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.+++++|||||+|.+.++|++|+ ++++.++|+.|.|+++.+++
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 3567889999999999999999999999 68999999999999998764
No 219
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.2e-10 Score=77.60 Aligned_cols=51 Identities=24% Similarity=0.512 Sum_probs=45.5
Q ss_pred CCCCCCC-CCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCC
Q 027167 1 MPKDQGS-KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDF 51 (227)
Q Consensus 1 l~~d~~t-g~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~ 51 (227)
|++|+.| ++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++....
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCCC
Confidence 5678887 999999999999999999999 78889999999999998876543
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.8e-10 Score=77.44 Aligned_cols=50 Identities=30% Similarity=0.521 Sum_probs=45.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++...
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 5678899999999999999999999999 6899999999999999877543
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=5.9e-10 Score=76.07 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=45.3
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 5678889999999999999999999999 6899999999999999887553
No 222
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=4.9e-10 Score=78.43 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|+++.++...
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 4678899999999999999999999999 5899999999999999876543
No 223
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=5.9e-10 Score=77.68 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=45.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hc------CceeCCcEEEEeecCCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VD------THELGGSTVVVDRATPKEDDF 51 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~------~~~~~gr~i~v~~~~~~~~~~ 51 (227)
|++|+.|+.++|||||+|.+.++|++|| ++ ++.|+|+.|.|+++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 5788899999999999999999999999 56 899999999999998876543
No 224
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.04 E-value=8.8e-11 Score=80.60 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCC-cEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG-STVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~g-r~i~v~~~~~~ 47 (227)
|++|+.||++||||||+|.+.++|++|| ++++.|+| +.|.|.++.++
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 5789999999999999999999999999 68999999 99999998654
No 225
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4.5e-10 Score=77.53 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=45.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.++.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 5678889999999999999999999999 5889999999999999887654
No 226
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.02 E-value=5.4e-10 Score=75.88 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|+.++|||||+|.+.++|++|+ +++..++|+.|.|+++.++..
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 5678889999999999999999999999 689999999999999987643
No 227
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=4.1e-10 Score=76.20 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 3578889999999999999999999999 689999999999999987654
No 228
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=77.67 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|+.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.+...
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 5678899999999999999999999999 689999999999999987644
No 229
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.01 E-value=2.7e-10 Score=75.79 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.++.++|||||+|.+.++|++|+ ++++.++|+.|.|+++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 3567889999999999999999999999 5899999999999998764
No 230
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.00 E-value=2.9e-10 Score=73.51 Aligned_cols=44 Identities=36% Similarity=0.631 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~ 44 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.++|+.|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4678889999999999999999999999 7899999999999875
No 231
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.8e-10 Score=78.45 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=45.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDF 51 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~~ 51 (227)
|++|+.|+.++|||||+|.+.++|++|| .+++.|+|+.|.|+++.++....
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence 4678899999999999999999999999 67889999999999998876543
No 232
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.3e-10 Score=76.92 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.++.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 3567889999999999999999999999 589999999999999987654
No 233
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.99 E-value=6.7e-10 Score=77.35 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.||.++|||||+|.+.++|++|| ..++.|+|+.|.|+++.++..
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence 4678899999999999999999999999 446899999999999987654
No 234
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.99 E-value=5e-10 Score=78.64 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 3578889999999999999999999999 6899999999999999877553
No 235
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.5e-10 Score=77.92 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCce-eCCcEEEEeecCCCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHE-LGGSTVVVDRATPKEDDFR 52 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~-~~gr~i~v~~~~~~~~~~~ 52 (227)
|++|+ |+.++|||||+|.+.++|++|| ++++. |+|+.|.|.++.++.....
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 35677 8999999999999999999999 57888 9999999999987765443
No 236
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.98 E-value=1.1e-09 Score=76.77 Aligned_cols=50 Identities=28% Similarity=0.435 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.++.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 3567889999999999999999999999 5899999999999999877553
No 237
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.8e-10 Score=76.94 Aligned_cols=49 Identities=31% Similarity=0.607 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.++.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678889999999999999999999999 689999999999999987654
No 238
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.98 E-value=2.9e-10 Score=77.94 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 4677888999999999999999999999 788999999999999987644
No 239
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4.6e-10 Score=77.51 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|+.++|||||+|.+.++|++|| .+++.|+|+.|.|+++.++...
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence 4578889999999999999999999999 5788999999999999877543
No 240
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=4.3e-10 Score=77.41 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+ +++++|||||+|.+.++|++|| ++++.|++|.|.|..+.+...
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCCC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCCC
Confidence 45777 8999999999999999999999 678899999999998876543
No 241
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.96 E-value=1e-09 Score=79.71 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=44.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|.|.++.++...
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 3567889999999999999999999999 5899999999999999887554
No 242
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=1.6e-09 Score=74.95 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=44.5
Q ss_pred CCCC-CCCCCcccEEEEEEcCHHHHHHHH--h-cCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKD-QGSKAHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d-~~tg~srG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++| +.++.++|||||+|.+.++|++|| + +++.|.|+.|.|+++.++...
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 4567 789999999999999999999999 5 789999999999999877553
No 243
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.95 E-value=5e-10 Score=80.59 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCc----eeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTH----ELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~----~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.||++||||||+|.+. +|.+|+ ++++ .|+|+.|.|+++.++...
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 678999999999999999999 999999 6888 999999999999876543
No 244
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.95 E-value=9.5e-10 Score=76.54 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.|+.++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++.
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 5678899999999999999999999999 68999999999999987654
No 245
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.95 E-value=6.2e-10 Score=76.25 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=43.0
Q ss_pred CCCCC-CCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQ-GSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~-~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+ .+|+++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++.
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 46777 68999999999999999999999 68899999999999987653
No 246
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.95 E-value=1.7e-09 Score=74.75 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCcee---CCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL---GGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~---~gr~i~v~~~~~~~~ 49 (227)
|++|+.|++++|||||+|.+.++|++|+ +++..+ .|+.|.|+++.++..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 5788899999999999999999999999 678777 889999999987654
No 247
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=75.05 Aligned_cols=47 Identities=6% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|+ +++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 50 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 50 VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4566 8999999999999999999999 589999999999999987653
No 248
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=7.4e-10 Score=75.43 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
++++.+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++..+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 467889999999999999999999999 5788999999999998754
No 249
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.94 E-value=4.7e-10 Score=83.24 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.||++||||||+|.+.++|++|| ++++.|+|+.|.|+++.++
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 4678999999999999999999999999 5899999999999998754
No 250
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.94 E-value=7.1e-10 Score=73.79 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=39.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~ 44 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+.|.|++|
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3578889999999999999999999999 5688999999999875
No 251
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.94 E-value=5.1e-10 Score=72.32 Aligned_cols=44 Identities=32% Similarity=0.563 Sum_probs=40.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~ 44 (227)
|++|+.|+.++|||||+|.+.++|++|+ ++++.++|+.|.|+++
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 4678899999999999999999999999 6788999999999865
No 252
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=2.3e-09 Score=73.38 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|+++ .+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++..
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 3455 67999999999999999999999 589999999999999987654
No 253
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.94 E-value=9.2e-10 Score=72.83 Aligned_cols=44 Identities=32% Similarity=0.566 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
|++|+.+++++|||||+|.+.++|++|+ ++++.++|+.|.|+++
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4678889999999999999999999999 6899999999999887
No 254
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.7e-09 Score=74.01 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=42.3
Q ss_pred CCCCCCCcccEEEEEEcCHHHHHHHH--hc--CceeCCcEEEEeecCCCCC
Q 027167 3 KDQGSKAHRGIGFITFASADSVENLM--VD--THELGGSTVVVDRATPKED 49 (227)
Q Consensus 3 ~d~~tg~srG~aFV~F~~~~~A~~Ai--~~--~~~~~gr~i~v~~~~~~~~ 49 (227)
+|+.|+.++|||||+|.+.++|++|+ ++ ++.++|+.|.|+++.++..
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 78889999999999999999999999 43 4899999999999987654
No 255
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.94 E-value=5.7e-10 Score=76.20 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
|++|+.|++++|||||+|.+.++|++|+ +++..|+|+.|.|+++.
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 3567889999999999999999999999 68999999999999873
No 256
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=7.3e-10 Score=75.91 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=36.7
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|||||+|.+.++|++|+ ++++.++|+.|.|+++.++..
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 7999999999999999999 588899999999999987654
No 257
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=9.8e-10 Score=74.28 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=41.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
|++|+.|+.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.+
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 3568889999999999999999999999 689999999999998864
No 258
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=9.3e-10 Score=73.90 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~ 48 (227)
++| .+|+++|||||+|.+.++|++|| +++..|+|+.|.|.++.++.
T Consensus 42 ~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 42 VRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred EEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 456 77999999999999999999999 78889999999999997764
No 259
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=73.61 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=40.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
|++|+.++.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4678889999999999999999999999 6899999999999987
No 260
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.93 E-value=1.6e-09 Score=76.26 Aligned_cols=47 Identities=28% Similarity=0.463 Sum_probs=42.2
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|+ |+.++|||||+|.+.++|++|+ +++..|+|+.|.|+++.++..
T Consensus 40 ~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 40 IKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp ECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4566 8999999999999999999999 589999999999999987654
No 261
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=5.7e-10 Score=78.35 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+ |++++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++.
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 46788 8999999999999999999999 67889999999999987654
No 262
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=6.5e-10 Score=76.85 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.|+.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++.
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 3578889999999999999999999999 68999999999999987653
No 263
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.92 E-value=9.5e-10 Score=73.42 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.++|+.|.|+++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 3567889999999999999999999999 7889999999999998764
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.1e-09 Score=74.16 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=42.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++| .||+++|||||+|.+.++|++|| .+++.|+||.|.|.++.+++.
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTS
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHH
Confidence 4566 78999999999999999999999 678899999999998876543
No 265
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.91 E-value=6.4e-10 Score=77.35 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.+++++|||||+|.+.++|++|+ +++..|+|+.|.|+++.++.
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 3567889999999999999999999999 68999999999999997763
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.91 E-value=8.9e-10 Score=74.53 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
++|+.+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 467889999999999999999999999 689999999999998753
No 267
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=75.70 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~ 46 (227)
|++|+. |+++|||||+|.+.++|++|| ++++.|+||.|.|..+.+
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 467876 999999999999999999999 788999999999988754
No 268
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=4.1e-09 Score=74.02 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|++++|||||+|.+.++|++|| +++ .|+|+.|.|+++.+...
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 4678899999999999999999999999 344 89999999999976543
No 269
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.90 E-value=2.7e-09 Score=79.07 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=44.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.||+++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 5788899999999999999999999999 589999999999999987643
No 270
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.88 E-value=1.2e-09 Score=78.50 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|.|+++.++.
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 4578899999999999999999999999 68999999999999987653
No 271
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=1.2e-09 Score=74.35 Aligned_cols=43 Identities=14% Similarity=0.364 Sum_probs=39.3
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|+.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++..
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 6799999999999999999999 589999999999999987654
No 272
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=74.39 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=43.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcE----EEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGST----VVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~----i~v~~~~~~~ 48 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+. |+|.++.+..
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 3578889999999999999999999999 5899999999 9999987653
No 273
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.87 E-value=1.9e-09 Score=76.83 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|+.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 5678889999999999999999999999 6899999999999999766543
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.87 E-value=9.4e-10 Score=73.68 Aligned_cols=48 Identities=27% Similarity=0.547 Sum_probs=40.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|+.++|||||+|.+.+ |++|+ ++++.++|+.|.|+++.+...
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4678889999999999999999 99999 588999999999999987643
No 275
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1e-09 Score=75.48 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=43.4
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|+.++.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 41 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 41 VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 567789999999999999999999999 689999999999999987644
No 276
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=73.22 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=40.5
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
++.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++...
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 7899999999999999999999 6899999999999999887653
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=5.5e-09 Score=72.85 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCCCCC---CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 2 PKDQGS---KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 2 ~~d~~t---g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
++|+.+ ++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++.
T Consensus 51 ~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 51 NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 455554 466799999999999999999 58999999999999998775
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.86 E-value=3.2e-09 Score=75.48 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.++.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.+..
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 3567889999999999999999999999 68899999999999987653
No 279
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.5e-09 Score=74.91 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.|+.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 4678899999999999999999999999 7899999999999998654
No 280
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1.2e-08 Score=68.06 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccC
Q 027167 98 QRIGKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 167 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~ 167 (227)
.+++.||+|.-++.. +-. .+|.+.|++||.|..+++..| -+||+|.+.++|.+||. +..++.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHhcCCeeeC
Confidence 456899999988743 322 568999999999999999987 29999999999999997 455999
Q ss_pred CeEEEEEecCC
Q 027167 168 GQQVAIDSATP 178 (227)
Q Consensus 168 g~~l~V~~a~~ 178 (227)
|+.|+|++..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999997543
No 281
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.84 E-value=2.5e-09 Score=71.16 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=41.7
Q ss_pred CCCCCCCCC-cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 1 MPKDQGSKA-HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 1 l~~d~~tg~-srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
|++|+.++. ++|||||+|.+.++|++|+ +++..++|+.|.|+++.+..
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 356666665 9999999999999999999 58999999999999987653
No 282
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.84 E-value=3e-09 Score=78.72 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=45.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|+.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.+....
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 4578889999999999999999999999 5899999999999999876553
No 283
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.84 E-value=5.5e-10 Score=78.41 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
++.++|||||+|.+.++|++|+ ++++.++|+.|.|.++.++
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3667999999999999999999 6899999999999998754
No 284
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.84 E-value=3e-09 Score=73.56 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCCCC-CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 2 PKDQG-SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 2 ~~d~~-tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
++|+. +++++|||||+|.+.++|++|+ +++..++||.|.|.++.+
T Consensus 46 ~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 46 FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 45654 4799999999999999999999 799999999999999864
No 285
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.6e-09 Score=70.84 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.+ ||||||+|.+.++|++|| +++..|+|+.|.|+++.+...
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 3566665 899999999999999999 689999999999999976543
No 286
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.83 E-value=8.2e-10 Score=78.87 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+. |+++|||||+|.+.++|++|| +++..|+||.|.|..+.++
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 567887 999999999999999999999 5678999999999887643
No 287
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.83 E-value=4.6e-09 Score=69.56 Aligned_cols=37 Identities=11% Similarity=0.366 Sum_probs=34.8
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
.+||||||+|.+.++|++|+ +|+..++||+|+|+.|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 48999999999999999999 78999999999999884
No 288
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=1.3e-09 Score=70.62 Aligned_cols=44 Identities=32% Similarity=0.546 Sum_probs=38.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHh-cCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~-~~~~~~gr~i~v~~~ 44 (227)
|++|+.|++++|||||+|.+.++|++|+. .++.++|++|.|+++
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 35788899999999999999999999993 238999999999886
No 289
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.9e-09 Score=74.32 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~ 46 (227)
|++|+. +++||||||+|.+.++|++|| ++++.|+|+.|.|+++..
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467777 999999999999999999999 678999999999988754
No 290
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.81 E-value=4.5e-09 Score=72.39 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCC---cEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG---STVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~g---r~i~v~~~~~~~~ 49 (227)
++|+ ++.++|||||+|.+.++|++|| +++..+.| +.|.|+++.++..
T Consensus 48 ~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 48 LRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 4566 7999999999999999999999 68888888 9999999987654
No 291
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.31 E-value=4.5e-10 Score=79.06 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=44.8
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
|++|+.|++++|||||+|.+.++|++|| +++..|+|+.|.|+++.++...
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4577889999999999999999999999 6899999999999999877554
No 292
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.81 E-value=3.5e-09 Score=76.60 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.+...
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 5678889999999999999999999999 589999999999999976543
No 293
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=9.7e-09 Score=70.46 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=40.1
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
++|+. .++|||||+|.+.++|++|+ ++++.|.|+.|.|+++.++...
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 34543 47999999999999999999 6899999999999999886543
No 294
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.81 E-value=2.1e-09 Score=77.76 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+. |+++|||||+|.+.++|++|| ++++.|+||.|.|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 356777 999999999999999999999 7888999999999988654
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.81 E-value=2.6e-09 Score=75.21 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=40.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4678889999999999999999999999 5899999999999886
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.81 E-value=3.6e-09 Score=74.72 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
++|+. |+++|||||+|.+.++|++|| ++++.|+||.|.|.++.++
T Consensus 53 ~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 53 IYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 56766 999999999999999999999 7889999999999988654
No 297
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.80 E-value=4.1e-09 Score=72.84 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=39.4
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
++|+ +++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.
T Consensus 62 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 62 HYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4567 8999999999999999999999 58999999999999875
No 298
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.80 E-value=5.8e-09 Score=74.15 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|+ +++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.+...
T Consensus 68 ~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 68 DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp ECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 5677 8999999999999999999999 689999999999999977543
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=4e-09 Score=73.90 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=41.7
Q ss_pred CCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 4 DQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 4 d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+..+++++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 3448999999999999999999999 5899999999999999877553
No 300
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.79 E-value=4.8e-09 Score=72.36 Aligned_cols=42 Identities=12% Similarity=0.291 Sum_probs=37.5
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~ 44 (227)
++|+. ++++|||||+|.+.++|++|+ +++..++||.|.|.++
T Consensus 60 ~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 60 CDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 45554 799999999999999999999 7899999999999875
No 301
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.2e-09 Score=77.84 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
+.+..||+++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 456678999999999999999999999 7889999999999998754
No 302
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.79 E-value=5.8e-09 Score=72.01 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=39.9
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCc-EEEEeecCCCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGS-TVVVDRATPKE 48 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr-~i~v~~~~~~~ 48 (227)
+.||+++|||||+|.+.++|++|| ++++.|+|+ .|.|+++...+
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 478999999999999999999999 589999998 99999987654
No 303
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=73.98 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+. |+++|||||+|.+.++|++|| ++++.|+||.|.|.++.++
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 467877 999999999999999999999 7888999999999988654
No 304
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.3e-09 Score=72.19 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=40.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
|++|+.|+.++|||||+|.+.++|++|+ ++++.|+|+.|++.++.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3578889999999999999999999999 68899999999887654
No 305
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.78 E-value=5.1e-09 Score=70.71 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~ 45 (227)
++|+. ++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.
T Consensus 49 ~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 49 CKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 45665 899999999999999999999 68999999999999875
No 306
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.77 E-value=2.3e-09 Score=84.52 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
|++|+.|+++||||||+|.+.++|++|| ++++.|+|+.|.|+++.+.
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 4678999999999999999999999999 6889999999999998654
No 307
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=70.58 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
++|+ +++++|||||+|.+.++|++|| ++++.|+|+.|.|+++...
T Consensus 48 ~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 48 LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 4566 5999999999999999999999 6899999999999998654
No 308
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.75 E-value=2.1e-09 Score=78.08 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+. ++++|||||+|.+.++|++|| ++++.|+||.|.|..+.+...
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 577876 999999999999999999999 678899999999998876644
No 309
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.8e-08 Score=69.14 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=38.1
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++...
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 53 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 48999999999999999999 6899999999999999877553
No 310
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.75 E-value=1.2e-08 Score=69.03 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
..++.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 357899999999999999999999 588899999999999977643
No 311
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.74 E-value=1.4e-08 Score=70.19 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=40.0
Q ss_pred CCCCCCC--CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 1 MPKDQGS--KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 1 l~~d~~t--g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
|++|+.+ +.++|||||+|.+.++|++|+ +++..++||.|.|.++..
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4566654 478999999999999999999 799999999999998753
No 312
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.73 E-value=7e-09 Score=74.17 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=40.0
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.|+++||||||+|.+.++|+.|+ +++..|.|++|.|.++.++..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 47899999999999999999999 689999999999999987654
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=3.6e-09 Score=75.26 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
++| .||+++|||||+|.+.++|++|| .+++.|++|.|.|..+.++
T Consensus 60 ~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 60 VTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp EEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred EEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 456 47999999999999999999999 6788999999999888654
No 314
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=3.1e-08 Score=68.65 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.++.++|||||+|.+.++|++|| ++++.|+|+.|.|+++.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 45678999999999999999999 689999999999999987654
No 315
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.70 E-value=3.8e-09 Score=72.41 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+ +++++|||||+|.+.++|++|+.+++.|+|+.|.|.++.++..
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC-
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcc
Confidence 35677 8999999999999999999999988899999999999876644
No 316
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.70 E-value=9.4e-09 Score=76.82 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.||.++|||||+|.+.++|++|| +++..|.|+.|.|.++.++..
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 3567889999999999999999999999 689999999999999876644
No 317
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=3.6e-08 Score=77.09 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHhccCCEeEEEeecCC----CCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEEecC
Q 027167 112 EATAEDLRRYFSRFGRILDVYVPKDP----KRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 177 (227)
Q Consensus 112 ~~t~~~l~~~F~~~G~i~~i~~~~d~----~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~~a~ 177 (227)
.-.+++|.+.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|+..+ ..+.||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34668899999999999999998543 45588999999999999999999754 49999999999865
No 318
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.4e-08 Score=70.97 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=40.0
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCcee--------CCcEEEEeecCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHEL--------GGSTVVVDRATPK 47 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~--------~gr~i~v~~~~~~ 47 (227)
|++|+ ++.++|||||+|.+.++|++|| +++..| .+++|.|.++.|+
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 35677 8999999999999999999999 688888 5788999998765
No 319
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.67 E-value=1e-08 Score=67.16 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCc-EEEE
Q 027167 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGS-TVVV 41 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr-~i~v 41 (227)
+.||+++|||||+|.+.++|++|+ +++..|+|+ +|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 568999999999999999999999 689999999 8876
No 320
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.3e-08 Score=72.13 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=37.1
Q ss_pred CCCCCCCCCcccEEEEEEcC----HHH----HHHHHh----cCceeCCcEEEEeecC
Q 027167 1 MPKDQGSKAHRGIGFITFAS----ADS----VENLMV----DTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~----~~~----A~~Ai~----~~~~~~gr~i~v~~~~ 45 (227)
++.|+.||+|+|||||+|.+ +++ |.+|+. ++..|+|+.|+|+.-.
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 46899999999999999997 544 778874 7889999999998654
No 321
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.65 E-value=2.3e-08 Score=67.01 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.+++++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 47899999999999999999999 589999999999999977643
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.64 E-value=1.6e-08 Score=73.71 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=40.7
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
..|++++|||||+|.+.++|.+|| +++..|.|+.|.|+++.+...
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 467999999999999999999999 689999999999999976543
No 323
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.3e-08 Score=67.85 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
++.++|||||+|.+.++|++|+ +++..|+|+.|.|+++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 4688999999999999999999 68999999999999998764
No 324
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=6e-08 Score=66.28 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=37.4
Q ss_pred CCcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+++||||||+|.+.++|++||.....+.+++|.|+++.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 478999999999999999999777788999999999877644
No 325
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=7.8e-08 Score=65.15 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 368999999999999999999 589999999999999987654
No 326
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.62 E-value=4.7e-08 Score=68.14 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=36.0
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
+.++|||||+|.+.++|++|| +++..|+|+.|.|+++...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 468999999999999999999 6899999999999988643
No 327
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=3.3e-08 Score=68.64 Aligned_cols=40 Identities=23% Similarity=0.528 Sum_probs=36.8
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
+.++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 459999999999999999999 6899999999999998765
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.60 E-value=2.1e-08 Score=67.89 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++.++|||||+|.+.++|++|+ ++++.++|+.|.|+++.++..
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 5788999999999999999999 689999999999999987643
No 329
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.59 E-value=8e-08 Score=82.66 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 1 l~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
|++|+.|+.++|||||+|.+.++|.+|| ++++.|+|+.|.|.++.++..
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 5678889999999999999999999999 689999999999999987654
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.8e-08 Score=64.88 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=37.3
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcC-ceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDT-HELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~-~~~~gr~i~v~~~~~~~~ 49 (227)
.++|||||+|.+.++|++|+ +++ +.|+|+.|.|+++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 57999999999999999999 688 899999999999987654
No 331
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.59 E-value=2.1e-08 Score=70.69 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
+++++||+||+|.+.++|.+|+ +++..++||.|.|.++..
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 5789999999999999999999 799999999999998753
No 332
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=9.5e-08 Score=66.62 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=37.5
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 48999999999999999999 689999999999999987654
No 333
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.4e-07 Score=64.08 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=37.1
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 45899999999999999999 689999999999999987654
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=8e-08 Score=67.19 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=38.2
Q ss_pred CCCCCCC---CCcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecC
Q 027167 1 MPKDQGS---KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (227)
Q Consensus 1 l~~d~~t---g~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~ 45 (227)
+++|+.| |++||||||+|.+.++|++||...+.++|+.+.+..+.
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 3566666 89999999999999999999977778999998887554
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.52 E-value=3e-07 Score=62.90 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=37.3
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDF 51 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~ 51 (227)
.+|||||+|.+.++|++|| ++++.|+|+.|.|.++.++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 3679999999999999999 58999999999999998876544
No 336
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1.5e-07 Score=62.92 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=36.5
Q ss_pred cEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCCC
Q 027167 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDF 51 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~~ 51 (227)
|||||.|.+.++|++|+ +++..+.||+|+|+++..+....
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 99999999999999999 79999999999999998776543
No 337
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.51 E-value=1.1e-07 Score=63.22 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=35.9
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
+++|||||+|.+.++|++|+ +++..++|+.|.|+++..+
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999999 6899999999999998654
No 338
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=64.66 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.0
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCc--eeCCcEEEEeecCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTH--ELGGSTVVVDRATPKE 48 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~--~~~gr~i~v~~~~~~~ 48 (227)
++||||||+|.+.++|.+|+ +++. .|.|++|.|+++.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 36899999999999999999 4544 5899999999997653
No 339
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=2e-07 Score=62.17 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=36.2
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+|||||+|.+.++|++|+ +++..|+|+.|.|+++.++...
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 789999999999999999 6888999999999999876543
No 340
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=64.34 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=34.7
Q ss_pred cccEEEEEEcCHHHHHHHH--hcC--ceeCCcEEEEeecCCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDT--HELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~--~~~~gr~i~v~~~~~~~~~ 50 (227)
.||||||+|.+.++|++|| +++ ..|+|++|.|+++.++...
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCC
Confidence 4689999999999999999 353 4699999999999876543
No 341
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=9.1e-08 Score=65.25 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=35.8
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
+++|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 57999999999999999999 6899999999999998753
No 342
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=1.9e-07 Score=63.47 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=37.0
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 45899999999999999999 689999999999999987654
No 343
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=3e-07 Score=63.57 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=36.6
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+|||||+|.+.++|++|+ ++++.|+|+.|.|.++.++...
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 899999999999999999 6899999999999999877553
No 344
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=1.5e-07 Score=64.76 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.5
Q ss_pred cccEEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeecCCCCC
Q 027167 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKED 49 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~--~--~~~~~gr~i~v~~~~~~~~ 49 (227)
.||||||+|.+.++|++|+. + +..|+|++|.|+++.++..
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 38999999999999999993 4 4789999999999977644
No 345
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=1.8e-07 Score=65.18 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred CcccEEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeecCCCCCC
Q 027167 9 AHRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~--~--~~~~~gr~i~v~~~~~~~~~ 50 (227)
++||||||+|.+.++|++||. + ...|+||+|.|+++.++...
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 578999999999999999993 4 45799999999999876553
No 346
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=5.1e-07 Score=60.38 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=35.6
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++||||+|.+.++|++|+ ++++.|+|+.|.|+++.++..
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 669999999999999999 689999999999999987654
No 347
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.44 E-value=2.7e-07 Score=62.59 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.9
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
++|||||+|.+.++|++|+ +++..++|+.|.|+++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4899999999999999999 6889999999999998764
No 348
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.44 E-value=2.2e-07 Score=64.40 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=36.1
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|||||+|.+.++|++|+ ++++.|+|+.|.|+++.+...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 6899999999999999999 689999999999999975443
No 349
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=4.3e-07 Score=62.13 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=35.2
Q ss_pred cccEEEEEEcCHHHHHHHHh----cCceeCCcEEEEeecCCCCCC
Q 027167 10 HRGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~----~~~~~~gr~i~v~~~~~~~~~ 50 (227)
.||||||+|.+.++|++|+. ++..|.|++|.|+++.++...
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 38999999999999999993 356899999999999876543
No 350
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.3e-07 Score=62.42 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=38.3
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+.|+.+++ ||||+|.+.++|++|| ++++.|+|+.|.|+++.++..
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 35666666 9999999999999999 788999999999998876543
No 351
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=3.2e-07 Score=63.10 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=34.1
Q ss_pred cccEEEEEEcCHHHHHHHH--hcC--ceeCCcEEEEeecCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDT--HELGGSTVVVDRATPKED 49 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~--~~~~gr~i~v~~~~~~~~ 49 (227)
.||||||+|.+.++|++|+ +++ ..|+|++|.|+++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 4899999999999999999 343 469999999999987654
No 352
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=5.2e-07 Score=62.32 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=35.4
Q ss_pred cEEEEEEcCHHHHHHHH--hcCceeCC-----cEEEEeecCCCCCC
Q 027167 12 GIGFITFASADSVENLM--VDTHELGG-----STVVVDRATPKEDD 50 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~g-----r~i~v~~~~~~~~~ 50 (227)
|||||+|.+.++|++|| ++++.|+| +.|.|+++.++...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 89999999999999999 68899999 99999999886543
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.41 E-value=2.4e-07 Score=65.51 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=37.4
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++..
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 68999999999999999999 689999999999999987643
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.39 E-value=3.2e-07 Score=60.59 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCcccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEee
Q 027167 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDR 43 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~ 43 (227)
..++|||||+|.+.++|++|+ ++++.|+|+.|.|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 356899999999999999999 789999999999975
No 355
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=3.4e-07 Score=61.88 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.2
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeC--CcEEEEeecCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELG--GSTVVVDRATPKE 48 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~--gr~i~v~~~~~~~ 48 (227)
+|||||+|.+.++|++|+ ++++.|+ |+.|.|+++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 899999999999999999 6899999 9999999998764
No 356
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.37 E-value=3.8e-07 Score=63.15 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=35.3
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
+|||||+|.+.++|++|+ +++..|+|+.|.|.++.++..
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 799999999999999999 689999999999999977643
No 357
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=6.5e-07 Score=59.61 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=35.3
Q ss_pred ccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++||||+|.+.++|++|+ ++++.|+|+.|.|+++.+...
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 569999999999999999 689999999999999987643
No 358
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.36 E-value=5.4e-07 Score=60.06 Aligned_cols=41 Identities=27% Similarity=0.474 Sum_probs=31.6
Q ss_pred CcccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCC
Q 027167 9 AHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~ 49 (227)
.+||||||+|.+.++|+++....+.+.|+.|.|.++.++..
T Consensus 46 ~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC----
T ss_pred CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCc
Confidence 38999999999999999654445567899999999987654
No 359
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.8e-06 Score=57.80 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh--cCCccCCeEEE
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 172 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~g~~l~ 172 (227)
...+|-+-|||..+++..|+.++.++ |.|+.|.+.+|. +=|+|+|.+...|.+|.. ++.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 999999999982 359999999999999975 56699999999
Q ss_pred EE
Q 027167 173 ID 174 (227)
Q Consensus 173 V~ 174 (227)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.4e-07 Score=62.59 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=36.0
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~~ 49 (227)
++|||||+|.+.++|++|+ +++..+.|+.|.|+++.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 5899999999999999999 588999999999999876644
No 361
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.33 E-value=4.1e-07 Score=63.62 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=34.4
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~ 46 (227)
++|||||+|.+.++|++|+ +++..++||.|.|.++..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 5999999999999999999 799999999999998753
No 362
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=4.9e-07 Score=59.41 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=32.9
Q ss_pred CcccEEEEEEcCHHHHHHHH--h-cCceeCCcEEEEeec
Q 027167 9 AHRGIGFITFASADSVENLM--V-DTHELGGSTVVVDRA 44 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~-~~~~~~gr~i~v~~~ 44 (227)
.++|||||+|.+.++|++|+ + +++.++|+.|.|+++
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 36899999999999999999 4 788999999999887
No 363
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.32 E-value=6.6e-07 Score=66.35 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCcccEEEEEEcCHHHHHHHH--hcCceeCC--cEEEEeecCCCCC
Q 027167 8 KAHRGIGFITFASADSVENLM--VDTHELGG--STVVVDRATPKED 49 (227)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~~~~~~~ 49 (227)
+.++|||||+|.+.++|++|+ +++..|.| +.|+|+++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 346899999999999999999 68999965 9999999988754
No 364
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5.5e-07 Score=60.67 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCCCCCCCcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCCC
Q 027167 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (227)
Q Consensus 2 ~~d~~tg~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~~ 48 (227)
++|+.++. |||+|.+.++|++|+ ++++.|+|+.|.|+++.++.
T Consensus 49 ~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 49 NTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 45555543 999999999999999 68999999999999998773
No 365
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=5.9e-07 Score=59.54 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=35.7
Q ss_pred cccEEEEEEcCHHHHHHHHhcCceeCCcEEEEeecCCCCCC
Q 027167 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~gr~i~v~~~~~~~~~ 50 (227)
+||||||+|.+.++|++|+...+.+.++.|.|.++.++...
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCC
Confidence 89999999999999998776667889999999999877553
No 366
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.4e-05 Score=53.93 Aligned_cols=77 Identities=31% Similarity=0.375 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc---c--CCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc-CCccCCeEEE
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSR---F--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVA 172 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~---~--G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~-~~~~~g~~l~ 172 (227)
....+|.|.|||+.+.++.|.-+|+. - |+|.++.... .-|+|+|.+...|+++|.+ .|.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 34789999999999999999999976 2 4788887654 3689999999999999987 8899999999
Q ss_pred EEecCCCCCCC
Q 027167 173 IDSATPLDDAG 183 (227)
Q Consensus 173 V~~a~~~~~~~ 183 (227)
|.-..++...+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98777666543
No 367
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=4.6e-07 Score=63.02 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=35.5
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
.++|||||+|.+.++|++|| +++..|+|+.|.|+++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999 6899999999999998653
No 368
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.1e-06 Score=61.86 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=35.0
Q ss_pred cccEEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeecCCCCCC
Q 027167 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDD 50 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~--~--~~~~~gr~i~v~~~~~~~~~ 50 (227)
.||||||+|.+.++|++|+. + +..|.|++|.|.++.++...
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 48999999999999999993 4 46899999999999776543
No 369
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.21 E-value=2.3e-06 Score=61.06 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=36.6
Q ss_pred cccE-EEEEEcCHHHHHHHH--hcCceeCC--cEEEEeecCCCCCCC
Q 027167 10 HRGI-GFITFASADSVENLM--VDTHELGG--STVVVDRATPKEDDF 51 (227)
Q Consensus 10 srG~-aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~~~~~~~~~ 51 (227)
++|| |||+|.+.++|++|+ +++..|.| +.|+|+++.++.-..
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v 110 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV 110 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeE
Confidence 4788 999999999999999 79999988 899999998775433
No 370
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.1e-06 Score=61.27 Aligned_cols=38 Identities=8% Similarity=0.206 Sum_probs=33.5
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCcee-----CCcEEEEeecCCC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHEL-----GGSTVVVDRATPK 47 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~-----~gr~i~v~~~~~~ 47 (227)
+||||||+|.+.++|++|+ +++.+| .|++|.|.++...
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 4899999999999999999 688888 6899999988643
No 371
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.09 E-value=5.8e-06 Score=58.53 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=34.1
Q ss_pred cE-EEEEEcCHHHHHHHH--hcCceeCC--cEEEEeecCCCCC
Q 027167 12 GI-GFITFASADSVENLM--VDTHELGG--STVVVDRATPKED 49 (227)
Q Consensus 12 G~-aFV~F~~~~~A~~Ai--~~~~~~~g--r~i~v~~~~~~~~ 49 (227)
|| |||+|.+.++|++|+ +++..|.| +.|+|+++.++.-
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 86 999999999999999 78999987 6999999987754
No 372
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.06 E-value=5.1e-06 Score=57.98 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=30.8
Q ss_pred cEEEEEEcCHHHHHHHH--hcCceeCCcE-----EEEeecCCCC
Q 027167 12 GIGFITFASADSVENLM--VDTHELGGST-----VVVDRATPKE 48 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai--~~~~~~~gr~-----i~v~~~~~~~ 48 (227)
|||||+|.+.++|++|| +++.+|+|+. |.|..+.+..
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 99999999999999999 6899999988 7777766543
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=53.15 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.5
Q ss_pred EEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCCC
Q 027167 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 13 ~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~~ 47 (227)
.+||+|.+.++|.+|| +++..++||.|+|+.+++.
T Consensus 51 ~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 4899999999999999 8999999999999998765
No 374
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.82 E-value=0.00013 Score=48.61 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=46.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
....+.++| ++|.++...||.++|+.||.| .|+++-| .-|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 344667777 999999999999999999954 4788776 369999999999988876
No 375
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.0005 Score=46.46 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcCC--ccCCeEEEE
Q 027167 101 GKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 173 (227)
Q Consensus 101 ~~~l~V~nLp~~~-t----~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~~--~~~g~~l~V 173 (227)
.++|+|.||+.++ . .+.++++|..|+++......+. -.-..|.|.++++|.+|-..+| .+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998765 2 2567899999998888777663 2357999999999999987666 899999999
Q ss_pred EecCCCC
Q 027167 174 DSATPLD 180 (227)
Q Consensus 174 ~~a~~~~ 180 (227)
-++.+.+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998654
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00013 Score=48.57 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=30.6
Q ss_pred EEEEEcCHHHHHHHH-hcCceeCCcEEEEeecCC
Q 027167 14 GFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (227)
Q Consensus 14 aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~~ 46 (227)
+||+|.+.++|.+|| +++..++||.|+|++..+
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccCC
Confidence 999999999999999 899999999999987654
No 377
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.0003 Score=46.94 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~ 161 (227)
.+.++| ++|.++.-.||.++|+.|| -..|+++-| .-|||.|.+++.|..|+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 445666 9999999999999999999 446888876 369999999998888775
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.15 E-value=0.00035 Score=57.92 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=29.6
Q ss_pred cccEEEEEEcCHHHHHHHH--hcCcee---CCc--EEEEeecC
Q 027167 10 HRGIGFITFASADSVENLM--VDTHEL---GGS--TVVVDRAT 45 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai--~~~~~~---~gr--~i~v~~~~ 45 (227)
+||||||+|.+.++|++|| +|+.++ .|+ .+.|.++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 6899999999999999999 688877 355 56777763
No 379
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0041 Score=43.15 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHh-cCCccCC-eEEEEEec
Q 027167 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG-QQVAIDSA 176 (227)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~g-~~l~V~~a 176 (227)
....-|.|-++|+.. .+.+.+.|++||.|++..... ...+-.|.|.++.+|++||. +...+.+ -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999999984 677899999999999887622 34699999999999999996 5566664 45566654
No 380
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.97 E-value=0.0035 Score=41.46 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCC--cccEEEEEecCHHHHHHHHh
Q 027167 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~--~~g~afV~f~~~~~a~~al~ 161 (227)
.+|.|++||+++|++++.+.++....+..........+.+ ...-|+|.|.+.+++..-..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4789999999999999999999998877776655433322 34679999999888777654
No 381
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.54 E-value=0.0014 Score=49.16 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCCCcccEEEEEEcCHHHHHHHHhc
Q 027167 6 GSKAHRGIGFITFASADSVENLMVD 30 (227)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~ 30 (227)
.++.++|||||+|.+.++|++||..
T Consensus 124 ~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 124 RSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 4688999999999999999999863
No 382
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.13 E-value=0.0035 Score=49.22 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.2
Q ss_pred CcccEEEEEEcCHHHHHHHH--hcCcee
Q 027167 9 AHRGIGFITFASADSVENLM--VDTHEL 34 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai--~~~~~~ 34 (227)
.+||||||+|.+.++|+.|+ +++..|
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 47999999999999999999 555555
No 383
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.04 E-value=0.0036 Score=53.77 Aligned_cols=56 Identities=14% Similarity=0.387 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~ 162 (227)
...|+|. .|..+++.+|.++|++||.|.++....+ ..-||.|+|.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHhc
Confidence 4589997 7999999999999999999999988765 347999999999998887653
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.01 Score=39.95 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=30.5
Q ss_pred cEEEEEEcCHHHHHHHHhc-CceeCCcEEEEeecCC
Q 027167 12 GIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (227)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~-~~~~~gr~i~v~~~~~ 46 (227)
+-|+|.|.+.+.|++.|.. .|.|.+..|.|....+
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPP 83 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCC
Confidence 5689999999999999976 9999999999966543
No 385
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.79 E-value=0.0055 Score=44.24 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=19.3
Q ss_pred cccEEEEEEcCHHHHHHHHhc
Q 027167 10 HRGIGFITFASADSVENLMVD 30 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~ 30 (227)
++|||||+|.+.++|++|+..
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 699999999999999999953
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.60 E-value=0.015 Score=38.77 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=43.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCC--cccEEEEEecCHHHHHHHHh
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSR 161 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~--~~g~afV~f~~~~~a~~al~ 161 (227)
+.+|.|+.||+.+|++++.+.++..-.+..........+.+ .-.-|+|.|.+.++...-..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 56899999999999999888887765554444333222222 23568999999988777654
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.41 E-value=0.036 Score=38.97 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCEeE-EEeecCC------------CCC-CcccEEEEEecCHHHHHHHHh-cCCc
Q 027167 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDP------------KRT-GHRGFGFVTFAEEVVADRVSR-RSHE 165 (227)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-i~~~~d~------------~~~-~~~g~afV~f~~~~~a~~al~-~~~~ 165 (227)
..-|.|-++|+.. ...+.+.|++||.|.+ +...++. ... ....|-.|+|.++.+|.+||. ++..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 5568888997775 4568889999999875 3222100 000 135788999999999999996 7788
Q ss_pred cCCeEEEEEecC
Q 027167 166 ICGQQVAIDSAT 177 (227)
Q Consensus 166 ~~g~~l~V~~a~ 177 (227)
+.|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877776543
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.024 Score=38.53 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=28.0
Q ss_pred EEEEEEcCHHHHHHHH--hcCceeCCcEEEEee
Q 027167 13 IGFITFASADSVENLM--VDTHELGGSTVVVDR 43 (227)
Q Consensus 13 ~aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~ 43 (227)
=|+|+|.|...|-+|. +++.+|+||+|+|.-
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4999999999999998 689999999999853
No 389
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.54 E-value=0.091 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=27.2
Q ss_pred EEEEEEcC-HHHHHHHH--h--cCceeCCcEEEEeecC
Q 027167 13 IGFITFAS-ADSVENLM--V--DTHELGGSTVVVDRAT 45 (227)
Q Consensus 13 ~aFV~F~~-~~~A~~Ai--~--~~~~~~gr~i~v~~~~ 45 (227)
.|||.|.+ .++|..|+ + ++.+|.+..++++...
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 59999999 89999998 3 3678999888887654
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.56 E-value=1.1 Score=39.08 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhc
Q 027167 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162 (227)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~ 162 (227)
.+..++|+ +|..+...+|.++|+.||.+ +|+++.| ..|||.|.+.+.|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 35566776 99999999999999999954 5666554 3699999999999888753
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.14 E-value=1.2 Score=29.93 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=29.2
Q ss_pred EEEEEcCHHHHHHHH--hcCceeCCcEEEEeecCCC
Q 027167 14 GFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (227)
Q Consensus 14 aFV~F~~~~~A~~Ai--~~~~~~~gr~i~v~~~~~~ 47 (227)
.-|.|.++++|.+|- +.+..+.|++++|-++.+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 468999999999998 5677999999999988743
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=73.15 E-value=4.1 Score=28.48 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=29.5
Q ss_pred ccEEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecC
Q 027167 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai-~~~~~~~gr~i~v~~~~ 45 (227)
...-.|.|.+..+|++|| .|+..|.|.-|-|...+
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 457799999999999999 78999999866676654
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=70.66 E-value=4.6 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=27.4
Q ss_pred ccEEEEEEcCHHHHHHHH-hcCceeCCcE-EEEeecC
Q 027167 11 RGIGFITFASADSVENLM-VDTHELGGST-VVVDRAT 45 (227)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai-~~~~~~~gr~-i~v~~~~ 45 (227)
...-.|.|.+..+|++|| .|+..|.+.. |-|....
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 457899999999999999 6888888644 4565544
No 394
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.78 E-value=64 Score=23.51 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=35.9
Q ss_pred CeEEEcCCCCC---------CCHHHHHHHH--hccCCEeEEEeecCCCCCCcccEEEEEecC-HHHHHHHH
Q 027167 102 KKIFVGRLPQE---------ATAEDLRRYF--SRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 160 (227)
Q Consensus 102 ~~l~V~nLp~~---------~t~~~l~~~F--~~~G~i~~i~~~~d~~~~~~~g~afV~f~~-~~~a~~al 160 (227)
.++.|.|+|.. ....+|++.| ..|..+. ++.+.+.. + ..|+++|.|.+ ..--..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~-G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL-G-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS-B-EEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC-C-CceeEEEEecCChHHHHHHH
Confidence 46778888862 2346899977 8998765 43333311 2 68899999985 34444443
No 395
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=38.29 E-value=57 Score=19.64 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=34.5
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhccC-----CEeEEEeecCCCCCCcccEEEEEecCHHHHHHHHhcC--CccCCeEEEEE
Q 027167 103 KIFVG-RLPQEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 174 (227)
Q Consensus 103 ~l~V~-nLp~~~t~~~l~~~F~~~G-----~i~~i~~~~d~~~~~~~g~afV~f~~~~~a~~al~~~--~~~~g~~l~V~ 174 (227)
++||. +--..++..+|..++..-+ .|=.|.+..+ |.||+.... .+..++..+ ..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45663 2334567777877776544 3446777443 788887643 233444332 36778888887
Q ss_pred ecC
Q 027167 175 SAT 177 (227)
Q Consensus 175 ~a~ 177 (227)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 396
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=32.76 E-value=89 Score=19.31 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=19.1
Q ss_pred EEEEEEcCHHHHHHHHhcCceeCCcEE
Q 027167 13 IGFITFASADSVENLMVDTHELGGSTV 39 (227)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~~~~gr~i 39 (227)
|.++.|....++-+-+.....++...|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~Vl 33 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVR 33 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEE
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHH
Confidence 889999887776666666666766443
No 397
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=24.33 E-value=32 Score=21.19 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.3
Q ss_pred CcccEEEEEEcC
Q 027167 9 AHRGIGFITFAS 20 (227)
Q Consensus 9 ~srG~aFV~F~~ 20 (227)
..||||||.=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999998654
No 398
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.96 E-value=36 Score=20.43 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=8.8
Q ss_pred CcccEEEEEEcC
Q 027167 9 AHRGIGFITFAS 20 (227)
Q Consensus 9 ~srG~aFV~F~~ 20 (227)
..||||||.=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999997443
No 399
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.63 E-value=17 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=15.7
Q ss_pred HHHHHHHhccCCEeEEEeecCCCCCCcccEEEEEec
Q 027167 116 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151 (227)
Q Consensus 116 ~~l~~~F~~~G~i~~i~~~~d~~~~~~~g~afV~f~ 151 (227)
+|+.++|...|.|+.... .+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 345566666666554432 5789999865
No 400
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.57 E-value=36 Score=20.94 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=9.2
Q ss_pred CcccEEEEEEcC
Q 027167 9 AHRGIGFITFAS 20 (227)
Q Consensus 9 ~srG~aFV~F~~ 20 (227)
..||||||.=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999998554
No 401
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.40 E-value=73 Score=20.32 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.5
Q ss_pred cccEEEEEEcCHHHHHHHHh
Q 027167 10 HRGIGFITFASADSVENLMV 29 (227)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~ 29 (227)
-.||-||++...++...++.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIK 68 (92)
T ss_dssp STTEEEEEESSHHHHHHHHT
T ss_pred cCCEEEEEEecchhHHHHHH
Confidence 57999999999998888884
No 402
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.35 E-value=34 Score=20.37 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=8.4
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||.=.
T Consensus 11 ~~kGfGFI~~~ 21 (66)
T 1c9o_A 11 NEKGYGFIEVE 21 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 36899999744
No 403
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.89 E-value=74 Score=21.07 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.9
Q ss_pred CcccEEEEEEcCHHHHHHHHhcCceeC
Q 027167 9 AHRGIGFITFASADSVENLMVDTHELG 35 (227)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~ 35 (227)
.-+||-|||=.+..+...|+..-..+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 469999999999999999996544443
No 404
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.79 E-value=38 Score=21.07 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.5
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..|||+||.=.
T Consensus 18 ~~kGfGFI~~~ 28 (79)
T 1h95_A 18 VRNGYGFINRN 28 (79)
T ss_dssp TTTTEEEEEEG
T ss_pred CCCCcEEEecC
Confidence 46899999743
No 405
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.36 E-value=37 Score=20.76 Aligned_cols=11 Identities=45% Similarity=0.779 Sum_probs=8.4
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||.=.
T Consensus 11 ~~kGfGFI~~~ 21 (73)
T 3a0j_A 11 AEKGYGFIERE 21 (73)
T ss_dssp TTTTEEEEECT
T ss_pred CCCCEEEEecC
Confidence 36899999744
No 406
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=21.24 E-value=39 Score=21.72 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.0
Q ss_pred CcccEEEEEE
Q 027167 9 AHRGIGFITF 18 (227)
Q Consensus 9 ~srG~aFV~F 18 (227)
..|||+||.-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4689999964
No 407
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.95 E-value=38 Score=20.18 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.6
Q ss_pred CcccEEEEEEc
Q 027167 9 AHRGIGFITFA 19 (227)
Q Consensus 9 ~srG~aFV~F~ 19 (227)
..||||||.=.
T Consensus 10 ~~kGfGFI~~~ 20 (66)
T 1g6p_A 10 SKKGYGFITKD 20 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEecC
Confidence 36899999754
Done!