BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027168
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF- 66
T+ YY++ + +K++ K +IL++T F+P+GGGQP DTG +IV +
Sbjct: 516 TRRLYYEDPFMKEFDAKVLRVIKD-----WVILDATAFYPEGGGQPYDTGVLIVNGREVK 570
Query: 67 --------KFIVHDVRS----KDGIVFHYGVVENSGGEFEMELEKGKEV----------- 103
K I+H V K+G++ H G ++ M G V
Sbjct: 571 VTNVQKVGKVIIHKVEDPGAFKEGMIVH-GKIDWKRRIQHMRHHTGTHVLMGALVRVLGR 629
Query: 104 RLWVDESRRKLN-SRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEA 162
+W S+ + +R + + + + EL KE+E+ AN ++ KV LP A
Sbjct: 630 HVWQAGSQLTTDWARLDISHYKRISEEEL----KEIEMLANRIVMEDRKVTWEWLPRTTA 685
Query: 163 S------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
+ GG +P G R+VK+ D CGGTH+ + +K+ + R +
Sbjct: 686 EQKYGFRLYQGGVVP-----GREIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRTERIQ 740
Query: 216 KGTTKVFYSVGS 227
G ++ ++ G
Sbjct: 741 DGVERIIFACGE 752
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 47/207 (22%)
Query: 27 SYFKGDDGR------RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDV-RSKDGI 79
+Y K GR A++L+ TIF+P GGGQP D G I + V DV + ++G
Sbjct: 13 AYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE------VLDVYKDEEGN 66
Query: 80 VFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELE 139
V+H V +F++ G EV L +D R Y + + L+ E+
Sbjct: 67 VWH---VVKEPEKFKV----GDEVELKIDWDYR------YKLMRIHTGLHLLEHVLNEVL 113
Query: 140 LEAN-ALISRG-----GKVMVA----VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDN- 188
E N L+ G G+ +A + Y+E + Y+ +G +I GD
Sbjct: 114 GEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQII---SLFNKYVDEGGEVKIWWEGDRR 170
Query: 189 -------PGCPCGGTHVSDISEIISMK 208
PCGGTHV DI EI +K
Sbjct: 171 YTQIRDFEVIPCGGTHVKDIKEIGHIK 197
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 1 MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
+ E T+ YYD+ L+ +++I +GD +IL + F+P+ GGQ +D G++I
Sbjct: 497 LQNEYPATEKLYYDDPTLLEFEAEVIG-VEGD----FVILNRSAFYPESGGQDNDVGYLI 551
Query: 61 VADSDFKFIVHDVRSKDGIVFH 82
KF V DV DG+V H
Sbjct: 552 ANGG--KFEVVDVLEADGVVLH 571
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 174 IPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVFYSVG 226
+P G R+V++GD+ CGGTH EI +K+ ++ + + G + ++ G
Sbjct: 685 VPPGRKIRVVQVGDDVQA-CGGTHCRSTGEIGXLKILKVESIQDGVIRFEFAAG 737
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFE 94
+IL++T F+P+GGGQP DTG +IV + V +V+ ++ H VE+ G E
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVX--VTNVQXVGXVIIH--XVEDPGAFXE 593
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 136 KELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVK---LGDNPGCP 192
+E+E AN + + + LP EEA + G + P RI+K + D
Sbjct: 56 REIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNA 115
Query: 193 CGGTHVSDISEIISMKVSQIRTKKG 217
C H EI +K+ ++R +K
Sbjct: 116 CNKEHTKTTGEIGPIKIRKVRFRKS 140
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 136 KELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVK---LGDNPGCP 192
+E+E AN + + + LP EEA G P RI+K + D
Sbjct: 56 REIERLANEKVKENAPIKIYELPREEAEKXFGEDXYDLFPVPEDVRILKVVVIEDWNVNA 115
Query: 193 CGGTHVSDISEIISMKVSQIRTKKG 217
C H EI +K+ ++R +K
Sbjct: 116 CNKEHTKTTGEIGPIKIRKVRFRKS 140
>pdb|2V9X|A Chain A, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|B Chain B, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|C Chain C, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|D Chain D, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|E Chain E, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|F Chain F, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|G Chain G, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|H Chain H, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|I Chain I, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|J Chain J, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|K Chain K, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
pdb|2V9X|L Chain L, E138d Variant Of Escherichia Coli Dctp Deaminase In
Complex With Dutp
Length = 193
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 101 KEVRLWVDESRRKLNSRPYVE-YKGSVPQNELQSKTKELELEANALISRGG 150
+++ W+DE R +N RP VE G+ L +K + A I G
Sbjct: 6 RDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSG 56
>pdb|1XS6|A Chain A, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|B Chain B, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|C Chain C, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|D Chain D, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|E Chain E, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|1XS6|F Chain F, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme
In Complex With Dutp
pdb|2J4Q|A Chain A, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
pdb|2J4Q|B Chain B, Crystal Structure Of A E138a Escherichia Coli Dctp
Deaminase Mutant Enzyme In Complex With Dttp
Length = 193
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 101 KEVRLWVDESRRKLNSRPYVE-YKGSVPQNELQSKTKELELEANALISRGG 150
+++ W+DE R +N RP VE G+ L +K + A I G
Sbjct: 6 RDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSG 56
>pdb|1XS1|A Chain A, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|B Chain B, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|C Chain C, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|D Chain D, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|E Chain E, Dctp Deaminase From Escherichia Coli In Complex With Dutp
pdb|1XS1|F Chain F, Dctp Deaminase From Escherichia Coli In Complex With Dutp
Length = 193
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 101 KEVRLWVDESRRKLNSRPYVE-YKGSVPQNELQSKTKELELEANALISRGG 150
+++ W+DE R +N RP VE G+ L +K + A I G
Sbjct: 6 RDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSG 56
>pdb|1XS4|A Chain A, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|B Chain B, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|C Chain C, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|D Chain D, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|E Chain E, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
pdb|1XS4|F Chain F, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme
In Complex With Dctp
Length = 193
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 101 KEVRLWVDESRRKLNSRPYVE-YKGSVPQNELQSKTKELELEANALISRGG 150
+++ W+DE R +N RP VE G+ L +K + A I G
Sbjct: 6 RDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSG 56
>pdb|2J4H|A Chain A, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
pdb|2J4H|B Chain B, Crystal Structure Of A H121a Escherichia Coli Dctp
Deaminase Mutant Enzyme
Length = 193
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 101 KEVRLWVDESRRKLNSRPYVE-YKGSVPQNELQSKTKELELEANALISRGG 150
+++ W+DE R +N RP VE G+ L +K + A I G
Sbjct: 6 RDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSG 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,188,550
Number of Sequences: 62578
Number of extensions: 308734
Number of successful extensions: 800
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 14
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)