BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027168
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8PWU0|SYA_METMA Alanine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=alaS PE=3
SV=1
Length = 926
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 43/251 (17%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F ++L++T F+ +GGGQP+D G I+ D+ ++
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----VVLDNTFFYAEGGGQPADIGTIVAEDTVYR 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
+ DV+ +G++ H +EN G E+ + KG+ + VDE RR +R +
Sbjct: 566 VV--DVQVYEGVILH--TIENPGK--ELAITKGELITGKVDEKRRMTLARHHTATHIVND 619
Query: 122 ----------YKGSVPQNELQSK-------------TKELELEANALISRGGKVMVAVLP 158
++ + E S+ +++EL AN + +V+ +P
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEEIRQIELLANRTVMENKRVVTEWMP 679
Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
EA + G G +P G RIVK+GD+ CGGTH + I +K+ + R +
Sbjct: 680 RTEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCTSTGIIGPIKILKTERIQD 738
Query: 217 GTTKVFYSVGS 227
G ++ ++ G+
Sbjct: 739 GVERIEFAAGT 749
>sp|Q8TU79|SYA_METAC Alanine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=alaS PE=3 SV=1
Length = 925
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 43/250 (17%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F ++L++T F+ +GGGQP+D G I V D +K
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----IVLDNTFFYAEGGGQPADIGTISVGDIVYK 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
+ DV+ +G++ H V+ GE +E+ KG + VDE RR +R +
Sbjct: 566 VV--DVQVYEGVIVH--TVDIPDGE--LEITKGDIITGKVDERRRMTLARHHTATHIVND 619
Query: 122 ----------YKGSVPQNELQSKT-------------KELELEANALISRGGKVMVAVLP 158
++ + E S+ K++EL AN + +V+ +P
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEELKQIELLANRTVMENKRVITEWMP 679
Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
EA + G G +P G RIVK+GD+ CGGTH I +K+ + R +
Sbjct: 680 RIEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCLSTGVIGPIKILKTERIQD 738
Query: 217 GTTKVFYSVG 226
G +V ++ G
Sbjct: 739 GVERVEFAAG 748
>sp|Q46CS0|SYA_METBF Alanine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=alaS PE=3 SV=1
Length = 923
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 43/250 (17%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F + ++L++T F+ +GGGQP+D G I A + +K
Sbjct: 511 TKRSFYDEPTRLEFEAVVLDIFDNN-----IVLDNTFFYAEGGGQPADMGTIATAYAVYK 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
+ DV+ DG++ H +EN G +++ KG V VDE RR +R +
Sbjct: 566 VV--DVQVYDGVIVH--TIENPDGN--LDIRKGDIVNGKVDEKRRMTLARHHTATHIVND 619
Query: 122 ----------YKGSVPQNELQSKT-------------KELELEANALISRGGKVMVAVLP 158
++ + E S+ K++EL AN ++ +V+ +
Sbjct: 620 AARKVLGTHIWQAGAQKFEDHSRLDLSHYKHISPDELKQIELLANRMVMENKRVVTEWMS 679
Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
EA G G +P G R+VK+GD+ C GTH + +K+ + R +
Sbjct: 680 RTEAEQEYGFGLYQGGVPPGEKIRVVKVGDDVEA-CAGTHCVSTGVVGPIKILRTERIQD 738
Query: 217 GTTKVFYSVG 226
G +V ++ G
Sbjct: 739 GVERVEFAAG 748
>sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=alaXL PE=3 SV=1
Length = 404
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 50/248 (20%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YY + + +K++ K D R ++L+ TIF+P+GGGQP D G ++ +DF+ +V
Sbjct: 6 YYKDPYLREIDAKIVDVRKEKD-RVEVVLDRTIFYPEGGGQPGDRG--VIKGNDFEIMVE 62
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNS--------------- 116
D K+G +FH G + GE E G++V+L++D R N
Sbjct: 63 DTIEKNGEIFHIGKLR---GEIPKE---GEKVKLYLDWEWRYGNMQMHTGQHILSAVLKK 116
Query: 117 ------------RPY--VEYKGSVPQNELQSKTKELELEANALISRGGKVMVA---VLPY 159
R Y +E G V + ++ ELE N +I V++ LP
Sbjct: 117 LYDLDTTGFNIFRDYAKIEVNGEVNWDMIERA----ELEVNKIIINDLPVVIEEYDKLPE 172
Query: 160 EEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK-KGT 218
E A L RIVK+GD PCGGTHV E+ +KV + K K
Sbjct: 173 EIALKLRKNV----TKVKEKIRIVKIGDVDVTPCGGTHVKSTREVGIIKVLRFYKKSKNL 228
Query: 219 TKVFYSVG 226
++ ++ G
Sbjct: 229 WRIEFTCG 236
>sp|Q971J4|SYA_SULTO Alanine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=alaS PE=3 SV=1
Length = 904
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 30/244 (12%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY++ K T+K++S +K L+L+ T F+P+GGGQ DTG II +
Sbjct: 504 PTKKLYYEDQYKRSFTAKVVSVYKN-----YLVLDQTTFYPEGGGQIGDTG-IIKDEKGN 557
Query: 67 KFIVHDVRSKDGIVFHYGVVENS---GGEFEMELEKGKEVRLW---------VDESRRKL 114
+ V D + ++FH E S G E E++ + R+ + +R+ L
Sbjct: 558 TYQVVDTQKVKDVIFHILDKEPSLKEGDEVYGEIDWQRRYRIMKHHTVTHVILSAARKVL 617
Query: 115 NSRPYVEYKGSVPQN----------ELQSKTKELELEANALISRGGKVMVAVLPYEEASM 164
+ PQ + + K++E AN +I+ V ++ EA M
Sbjct: 618 GEHVWQAGAEKTPQKGRLDITHYKLPTEEEIKKIEDLANYIINDRRSVRPLIINRTEAEM 677
Query: 165 LCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVF 222
G + +P+G+ R++++ D CGGTH+S+ SEI ++K+ + + + G ++
Sbjct: 678 KYGVSIYAGGVPEGADVRLIEIKDWDIEGCGGTHLSNTSEIGALKIINVEKIQDGVIRLE 737
Query: 223 YSVG 226
Y G
Sbjct: 738 YVAG 741
>sp|A0B6X3|SYA_METTP Alanine--tRNA ligase OS=Methanosaeta thermophila (strain DSM 6194 /
PT) GN=alaS PE=3 SV=1
Length = 913
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
+Y + + ++ F+G +++L+ T+F+P+GGGQP+D G ++V D F V+
Sbjct: 508 FYYRPFDQEFDATVLGIFEG-----SVVLDRTLFYPEGGGQPADRG-VLVRDGQV-FNVN 560
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE---------- 121
DV+ DG+V H VE G L G V +D RR ++R +
Sbjct: 561 DVQMIDGVVLHR--VEQEG------LSPGDRVTGRIDMRRRMAHARHHTATHIVNDSAKR 612
Query: 122 ------YKGSVPQNELQSK-------------TKELELEANALISRGGKVMVAVLPYEEA 162
++ ++E +++ K +ELEAN + V+ +P EEA
Sbjct: 613 VLGRHVWQAGAQKSEDRARLDISHYRRISDEELKAIELEANRRVMEMIPVITEFMPREEA 672
Query: 163 SMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTK 220
L G L +P G R+V++G + C GTHV++ I +K+ + R + G +
Sbjct: 673 ERLFGFQLYQGGVPPGREIRVVRVGSDIEA-CAGTHVTNTGMIGPIKILRTERVQDGVER 731
Query: 221 VFYSVG 226
+ ++ G
Sbjct: 732 IEFAAG 737
>sp|Q9HN24|SYA_HALSA Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 700922
/ JCM 11081 / NRC-1) GN=alaS PE=3 SV=1
Length = 929
Score = 69.7 bits (169), Expect = 2e-11, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 29/246 (11%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
T+ YYD+ + + ++ F+ G+DG A ++L+ T+F+P+GGGQP+DTG ++
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572
Query: 64 SDFKFIVHDVRSKDGIVFHYGVVENSGGEF---EMELEKGKEV--------------RLW 106
D V DV+ +DG+V H GEF +++ E+ + + R
Sbjct: 573 DDHTVDVIDVQERDGVVLHRTTDNPGKGEFVRGQIDTERRRRLMAHHTATHIVVYAARQV 632
Query: 107 VDESRRKLNSRPYVE-YKGSVPQNEL--QSKTKELELEANALISRGGKVMVAVLPYEEAS 163
+ E R+ ++ V+ + V E + KE+E AN ++ V EA
Sbjct: 633 LGEHVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAE 692
Query: 164 MLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-SQIRTKKGTTKV 221
G L IP G R+V + D+ CGGTHV+ EI S+K+ + R + G ++
Sbjct: 693 AEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILNAERVQDGVERL 751
Query: 222 FYSVGS 227
++ G+
Sbjct: 752 TFAAGA 757
>sp|B0R7I0|SYA_HALS3 Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 29341
/ DSM 671 / R1) GN=alaS PE=3 SV=1
Length = 929
Score = 69.7 bits (169), Expect = 2e-11, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 29/246 (11%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
T+ YYD+ + + ++ F+ G+DG A ++L+ T+F+P+GGGQP+DTG ++
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572
Query: 64 SDFKFIVHDVRSKDGIVFHYGVVENSGGEF---EMELEKGKEV--------------RLW 106
D V DV+ +DG+V H GEF +++ E+ + + R
Sbjct: 573 DDHTVDVIDVQERDGVVLHRTTDNPGKGEFVRGQIDTERRRRLMAHHTATHIVVYAARQV 632
Query: 107 VDESRRKLNSRPYVE-YKGSVPQNEL--QSKTKELELEANALISRGGKVMVAVLPYEEAS 163
+ E R+ ++ V+ + V E + KE+E AN ++ V EA
Sbjct: 633 LGEHVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAE 692
Query: 164 MLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-SQIRTKKGTTKV 221
G L IP G R+V + D+ CGGTHV+ EI S+K+ + R + G ++
Sbjct: 693 AEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILNAERVQDGVERL 751
Query: 222 FYSVGS 227
++ G+
Sbjct: 752 TFAAGA 757
>sp|Q054G6|SYA_LEPBL Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=alaS PE=3 SV=1
Length = 940
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENS----GGE 92
A++L T F+P+GGGQ DTGF+ + FK V D + ++ ++ H+G V + E
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLSGEFSIAQE 564
Query: 93 FEMELEKGKEVRLWVDES-------------------RRKLNSRPYVEYKGSVPQNELQS 133
E E+E + RL S + + S Y+ + S P
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624
Query: 134 KTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPC 193
+ +++E N I + V+ LP E+A + G G R+V++GD C
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQMGDASVEFC 683
Query: 194 GGTHVSDISEI 204
GGTHVS EI
Sbjct: 684 GGTHVSHTGEI 694
>sp|Q04QG6|SYA_LEPBJ Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=alaS PE=3 SV=1
Length = 940
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENS----GGE 92
A++L T F+P+GGGQ DTGF+ + FK V D + ++ ++ H+G V + E
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLSGEFSIAQE 564
Query: 93 FEMELEKGKEVRLWVDES-------------------RRKLNSRPYVEYKGSVPQNELQS 133
E E+E + RL S + + S Y+ + S P
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624
Query: 134 KTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPC 193
+ +++E N I + V+ LP E+A + G G R+V++GD C
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQMGDASVEFC 683
Query: 194 GGTHVSDISEI 204
GGTHVS EI
Sbjct: 684 GGTHVSHTGEI 694
>sp|C3N7E3|SYA_SULIY Alanine--tRNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=alaS PE=3 SV=1
Length = 900
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS +V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRQVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|C3NG91|SYA_SULIN Alanine--tRNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=alaS PE=3 SV=1
Length = 900
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS +V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRQVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|C3MR87|SYA_SULIL Alanine--tRNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=alaS PE=3 SV=1
Length = 900
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS +V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRQVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|B9LUG4|SYA_HALLT Alanine--tRNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239
/ DSM 5036 / JCM 8891 / ACAM 34) GN=alaS PE=3 SV=1
Length = 926
Score = 63.9 bits (154), Expect = 9e-10, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 25/237 (10%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
+YD+ + + + ++ F+ ++G ++L+ T+F+P+GGGQP+D G + ++ +
Sbjct: 520 FYDDQGRTEFEAVVLDVFELEEGYD-VVLDQTMFYPEGGGQPADRGQLTAGETTVDVV-- 576
Query: 72 DVRSKDGIVFHYGVVENSGGEF-EMELEKGKEVRLWVDESRRKLNSRPYVEYKGS-VPQN 129
DV+ ++G+V H + GEF +++ + RL + L E G+ V Q
Sbjct: 577 DVQERNGVVLHRTDADPGKGEFVRGQVDGDRRDRLRAHHTATHLIGHAAREVLGNHVRQA 636
Query: 130 ELQ------------------SKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLP 171
Q + KE+E ANAL+ V EA G L
Sbjct: 637 GAQKGIDSSRLDIRHFERITREQVKEIERVANALVRDDVPVRQEWPDRNEAESEHGFDLY 696
Query: 172 H-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR-TKKGTTKVFYSVG 226
+P G+ R++ +GD C GTHV EI ++KV + + G ++ ++ G
Sbjct: 697 QGGVPPGTNIRLIHVGDEDVQACAGTHVERTGEIGAVKVLKTEPVQDGVERIVFAAG 753
>sp|A3CVP2|SYA_METMJ Alanine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=alaS PE=3 SV=1
Length = 915
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 47/251 (18%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY+ +++ + ++ YF G +L+ T+F+P+GGGQPSDTG ++ ++S
Sbjct: 512 PTKKLYYELPNEVEFEAMVLDYFDG-----MAVLDQTLFYPEGGGQPSDTGTLVTSESMV 566
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP-------- 118
+ V +V ++ H +GG L +G V+ VDE RR R
Sbjct: 567 R--VEEVVKLGEVILH----RVTGG----PLMRGDRVKGMVDEERRWSLMRHHTATHVLL 616
Query: 119 ---------YVEYKGSVPQNELQ------------SKTKELELEANALISRGGKVMVAVL 157
+V G+ +E+ + + +ELEAN L+ V + V
Sbjct: 617 HAAQQVLGVHVHQAGAQKGSEVSRLDIRHYRHITPDELRRIELEANRLVMADTPVYIHVE 676
Query: 158 PYEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
+A G G +P G R V++G + C GTHV EI ++V + +
Sbjct: 677 ERTKAEQKYGFGLYQGGVPPGREIRTVQVGADVQA-CAGTHVRTTGEIGPIRVLGVEHIQ 735
Query: 216 KGTTKVFYSVG 226
G ++ ++ G
Sbjct: 736 DGVERLVFAAG 746
>sp|P96041|SYA_SULSO Alanine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=alaS PE=3 SV=2
Length = 900
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TTLQPTEKLYYKDQYMRSFEGKVLGIYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHY--------GVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVVDTQKVNDVIIHVLKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS V
Sbjct: 614 AKKVLGDHIWQAGAEKTPEKGRLDITHHKALTEEEV----KLIENYANSVISDRRPVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGIIRLEYVAG 742
>sp|C3MXH6|SYA_SULIM Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=alaS PE=3 SV=1
Length = 900
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRPVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|C4KIK1|SYA_SULIK Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=alaS PE=3 SV=1
Length = 900
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRPVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|C3MZC2|SYA_SULIA Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.27)
GN=alaS PE=3 SV=1
Length = 900
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 38/253 (15%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFH--------YGVVENSGGEFEME---------------LEK 99
S ++ V D + + ++ H V +N GE E L
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAA 613
Query: 100 GKEV---RLW-VDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
K+V +W + R + + ++ + E+ K +E AN++IS V
Sbjct: 614 AKKVLGEHVWQAGAEKTPEKGRLDITHHKTLTEEEV----KLIENYANSVISDRRPVKPL 669
Query: 156 VLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-R 213
+ EA M G + +P +T R++++ D CGGTHVS+ SEI ++K+ + R
Sbjct: 670 EMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVER 729
Query: 214 TKKGTTKVFYSVG 226
+ G ++ Y G
Sbjct: 730 IQDGVIRLEYVAG 742
>sp|A8MBI2|SYA_CALMQ Alanine--tRNA ligase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=alaS PE=3
SV=1
Length = 899
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 43/252 (17%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PT+ +Y++ + +K++ KG + ++L+STIF+P+GGGQP+D G + +
Sbjct: 497 PTRELFYEDTYAFEGKAKVLKVIKG----KYIVLDSTIFYPEGGGQPADRGVLRFNGVEA 552
Query: 67 KFIVHDVRSKDGIVFHY--GVVENSGGEFEMELEKGKEV---------RLWVDESRRKLN 115
K + DV+ ++ H G G EM ++ + + + + RR L
Sbjct: 553 KVV--DVQRVGPVIVHVIDGPTPGVGDVVEMRIDSERRLGLMRMHTGTHILLQSIRRVLG 610
Query: 116 SRPY-VEYKGSVPQNELQ---------SKTKELELEANALISRGGKVMVAVLPYEEAS-- 163
+ + +P + L + K +E AN ++ V ++P EA
Sbjct: 611 KHVWQAGAQKDIPLSRLDVTHYRLPTPDEVKRIEELANEVVLSDLPVKAELMPRNEAEAK 670
Query: 164 ----MLCGGCLPHYIPQGSTPRIVKLGDNPGC----PCGGTHVSDISEIISMKVSQI-RT 214
+ GG +P G RIVK+G+ CGGTH+ S I +K+ ++ +
Sbjct: 671 YGFIIYQGGVVP-----GGEVRIVKVGEGNDTYDVEACGGTHLDRTSRIGLIKIVKVDKI 725
Query: 215 KKGTTKVFYSVG 226
++G + ++ G
Sbjct: 726 QEGVIRFIFTTG 737
>sp|Q2LPL7|SYA_SYNAS Alanine--tRNA ligase OS=Syntrophus aciditrophicus (strain SB)
GN=alaS PE=3 SV=1
Length = 878
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 19 LQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-D 77
LQ + S +G++G LI+ T F+ + GGQ DTG I DF F V D R D
Sbjct: 480 LQKEELVDSLAEGEEGE--LIVAETPFYGEIGGQIGDTGTI--EGEDFVFEVLDTRRPLD 535
Query: 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------V 120
++ H G V G KG V L V E +R+ + +
Sbjct: 536 NLISHVGRVIKGRGR------KGDSVNLIVAEDKRRATEANHSATHLLQAAMKTVMGNHI 589
Query: 121 EYKGSVPQNELQ-------SKTKELELE-----ANALISRGGKVMVAVLPYEEASMLCGG 168
+ GS+ E SK +E ELE ANA+I R V+ VLP EEA M G
Sbjct: 590 KQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEEA-MKTGA 648
Query: 169 CLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
G R+V++GD CGGTH+ +I +K+
Sbjct: 649 TAVFDEKYGEKVRVVRMGDFSMELCGGTHIQRTGDIGFIKI 689
>sp|O58035|SYA_PYRHO Alanine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=alaS PE=1
SV=1
Length = 915
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF- 66
T+ YY++ + +K++ K +IL++T F+P+GGGQP DTG +IV +
Sbjct: 516 TRRLYYEDPFMKEFDAKVLRVIKD-----WVILDATAFYPEGGGQPYDTGVLIVNGREVK 570
Query: 67 --------KFIVHDVRS----KDGIVFHYGVVENSGGEFEMELEKGKEV----------- 103
K I+H V K+G++ H G ++ M G V
Sbjct: 571 VTNVQKVGKVIIHKVEDPGAFKEGMIVH-GKIDWKRRIQHMRHHTGTHVLMGALVRVLGR 629
Query: 104 RLWVDESRRKLN-SRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEA 162
+W S+ + +R + + + + EL KE+E+ AN ++ KV LP A
Sbjct: 630 HVWQAGSQLTTDWARLDISHYKRISEEEL----KEIEMLANRIVMEDRKVTWEWLPRTTA 685
Query: 163 S------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
+ GG +P G R+VK+ D CGGTH+ + +K+ + R +
Sbjct: 686 EQKYGFRLYQGGVVP-----GREIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRTERIQ 740
Query: 216 KGTTKVFYSVGS 227
G ++ ++ G
Sbjct: 741 DGVERIIFACGE 752
>sp|Q8TWY1|SYA_METKA Alanine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=alaS PE=3 SV=2
Length = 915
Score = 61.2 bits (147), Expect = 5e-09, Method: Composition-based stats.
Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 44/255 (17%)
Query: 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVAD 63
E+ T+L +YD+ +L+ +++I ++ + G ++L+ T F+P+GGGQ +D G + D
Sbjct: 501 ELPETELAFYDDEKRLEFKAEVIGTYEVN-GDAWVVLDRTYFYPEGGGQEADRGTMRWKD 559
Query: 64 SDFKFIVHDVRSKDGIVFHY--GVVENSGGEFEMELEKGKEVRLW---------VDESRR 112
+ + V DV+ G+VFH G V G E E E++ + +RL ++ +RR
Sbjct: 560 GEAE--VKDVQKVRGVVFHRIDGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARR 617
Query: 113 KL--------------NSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLP 158
L +R V + + EL +E+E AN ++ + V +
Sbjct: 618 VLGDHVWQAGAHKSTDEARLDVTHHRRISDEEL----REIERLANEIVMKDLPVNKRFMD 673
Query: 159 YEEA------SMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMK-VSQ 211
EA + GG +P G R+V++ C GTH EI +K V +
Sbjct: 674 RNEAERRYGFELYQGGVVP-----GREIRVVEIEGWNVQACAGTHCDSTGEIGPIKIVGR 728
Query: 212 IRTKKGTTKVFYSVG 226
R + G ++ ++ G
Sbjct: 729 ERIQDGVERIRFAAG 743
>sp|Q9UY36|SYA_PYRAB Alanine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=alaS PE=3 SV=1
Length = 914
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 55/256 (21%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ YY++ + ++++ GD ++L+ T F+P+GGGQP DTG + V S+ K
Sbjct: 516 TRTLYYEDPFMKEFEARVLRVI-GD----WIVLDQTAFYPEGGGQPYDTGVLFVNGSEVK 570
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR---------- 117
V +V+ ++ H VEN G ++G EVR +D RR + R
Sbjct: 571 --VTNVQKVGKVIVHK--VENPGL-----FKEGMEVRGRIDWDRRIQHMRHHTGTHVLMG 621
Query: 118 -------PYVEYKGSVPQNEL------------QSKTKELELEANALISRGGKVMVAVLP 158
+V GS + + +E+E AN ++ KV LP
Sbjct: 622 ALVRVLGKHVWQAGSQLTTDWARLDISHYKRISDEELREIERLANRIVMEDRKVTWEWLP 681
Query: 159 YEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 212
EA + GG +P G R+VK+ D CGGTH+ + +K+ +
Sbjct: 682 RTEAEQRYGFRLYQGGVVP-----GRVIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRT 736
Query: 213 -RTKKGTTKVFYSVGS 227
R + G ++ ++ G
Sbjct: 737 ERIQDGVERIIFACGE 752
>sp|A7I7S4|SYA_METB6 Alanine--tRNA ligase OS=Methanoregula boonei (strain 6A8) GN=alaS
PE=3 SV=1
Length = 914
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 55/256 (21%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY+ + + +I +F +L+ T+F+P+GGGQP+DTG ++ +DS
Sbjct: 511 PTKKLYYEQPGDTEFEAVVIDFFD-----EYAVLDQTLFYPEGGGQPADTGSLVGSDSMA 565
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRR-------------- 112
+ V DV ++ H+ SGG L++G+ V+ +DE RR
Sbjct: 566 R--VDDVIKVGEVILHH----ISGG----VLQRGERVKGMIDEERRFSLMRHHTATHILL 615
Query: 113 -------------------KLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVM 153
+SR + + + +EL +++E+EAN ++ V
Sbjct: 616 HAAKAVLGVHIHQSGAQKGPESSRIDIRHFKHITPDEL----RKIEIEANRMVMANRPVE 671
Query: 154 VAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 212
+++ +A G L +P G RIVK+ + C GTH EI ++K+ ++
Sbjct: 672 ISIENRTKAEQEYGFALYQGGVPPGKDLRIVKVAGDIEA-CAGTHCRSTGEIGAIKILRV 730
Query: 213 -RTKKGTTKVFYSVGS 227
+ G ++ ++ G+
Sbjct: 731 EHIQDGIERIEFAAGT 746
>sp|Q57984|SYA_METJA Alanine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=alaS PE=1 SV=1
Length = 892
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 54/230 (23%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
+IL+ T F+P+GGGQ +DTG+II D F+ + DV+ ++ IV+H +EN EL
Sbjct: 517 VILDRTAFYPEGGGQKADTGYIIKGDKKFRVV--DVQKENNIVYHK--IENLND----EL 568
Query: 98 EKGKEVRLWVDESRRK-----------LNSRP------YVEYKGS---VPQNEL------ 131
++G V+ +D RR +N+ +V GS V + L
Sbjct: 569 KEGDIVKGVIDWKRRLSLMRNHTATHIINAAAQKVLGRHVWQAGSDVDVDKARLDITHYK 628
Query: 132 ---QSKTKELELEANALISRGGKVMVAVLPYEEAS------MLCGGCLPHYIPQGSTPRI 182
+ + K++E AN ++ + + EA + GG +P G+ RI
Sbjct: 629 RISREELKDIERVANEIVLNNYNIKSIFMDRNEAEEKFGFRIYQGGVVP-----GNVLRI 683
Query: 183 VKLGDNPGC-----PCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVG 226
V + D G CGGTH + E+ +K+ + R + G ++ YS G
Sbjct: 684 VIIEDENGNIVDVQACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSG 733
>sp|P35029|SYA_SULAC Alanine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=alaS PE=3 SV=2
Length = 907
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 31/250 (12%)
Query: 2 NTEVIPTKLDYY-DNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
N ++ PT YY D L+ + L++Y + L+L+ T F+P+GGGQ DTG I
Sbjct: 501 NKKIEPTVPLYYKDQYLRTFNAKVLLNY------KNFLVLDQTTFYPEGGGQIGDTGIIR 554
Query: 61 VADSDFKFIVHDVRSKDGIVFH-------YGVVENSGGEFEME-----LEKGKEVRLWVD 108
+ + + V D + G++ H + E GE + + ++ + +
Sbjct: 555 SIEGNKQAKVIDTQKYKGVIVHILDKDSPFIQGEQVYGEIDWQRRYRIMKHHTVTHVILS 614
Query: 109 ESRRKLNSRPY------VEYKGSVPQNELQSKTKE----LELEANALISRGGKVMVAVLP 158
+RR L + EYKG + + T+E +E AN +I+ KV +
Sbjct: 615 ATRRVLGEHAWQAGAEKTEYKGRLDVTHYKLPTEEEIRKIEDFANYIINDRRKVRPLYIE 674
Query: 159 YEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
EA M G + IP+GS R++++ + CGGTH+ + EI +K+ + + +
Sbjct: 675 RTEAEMKYGVSIYAGGIPEGSEIRLIEIENWDIEGCGGTHLINTGEIGGVKIVNVEKLQD 734
Query: 217 GTTKVFYSVG 226
G ++ Y G
Sbjct: 735 GVIRLEYVAG 744
>sp|A2ST90|SYA_METLZ Alanine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=alaS PE=3 SV=1
Length = 913
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 47/250 (18%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ +Y+ ++ + ++ F ++L++T+F+P+GGGQPSDTG ++ + +
Sbjct: 512 TRKSFYERPADMEFDATVLDIFDN-----YVVLDATLFYPEGGGQPSDTGMLVTKSTMVR 566
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR---------- 117
V +V + ++ H V EN+ L++G V+ +DE RR R
Sbjct: 567 --VDEVVKWENVILH-KVRENT-------LKRGDRVKGVLDEDRRWALMRHHSATHMVLR 616
Query: 118 -------PYVEYKGS-----VPQNELQSKT-------KELELEANALISRGGKVMVAVLP 158
P+V GS V + +++ T K++E AN L+ MV +
Sbjct: 617 AAKEVLGPHVHQAGSQLSTDVARLDIRHYTHITPEELKQMETIANRLVMENLPTMVKIEN 676
Query: 159 YEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
+A G L +P G R+V++G C GTH EI +K+ ++ +
Sbjct: 677 RVKAEQKFGFALYQGGVPPGKDIRVVQMGAEVQA-CAGTHCQSTGEIGPIKILKLEHIQD 735
Query: 217 GTTKVFYSVG 226
G ++ ++ G
Sbjct: 736 GVERIEFAAG 745
>sp|B1L762|SYA_KORCO Alanine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=alaS PE=3 SV=1
Length = 895
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 112/254 (44%), Gaps = 52/254 (20%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGF-------- 58
PTKL YY + L+ ++++ Y G +IL+ T F+P+GGGQPSD G
Sbjct: 489 PTKLLYYQDPYLLEFEARVLGYVDG-----KMILDRTAFYPEGGGQPSDIGSFEWRGIEV 543
Query: 59 -IIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKE---VRLWVDESRRKL 114
++ A+ +I+H V +G + G V + + L + + + ++ +RR L
Sbjct: 544 KVVGAEKHGGWILHSV---EGDLPPAGEVVRARVDSWRRLNRMRHHTATHVILEAARRVL 600
Query: 115 NSRPY---------------VEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPY 159
S + YKG + Q EL + +E+ AN ++ R V L
Sbjct: 601 GSHVWQWGAQKGDEESRLDITHYKG-ISQEEL----RRIEMLANEVVMRNIPVRTLWLVR 655
Query: 160 EEA------SMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR 213
+A ++ GG +P + R+V++ CGGTHV EI +K+ + R
Sbjct: 656 TDAERRYGFTLYQGGVVPDPV-----LRVVEIEGFNAQACGGTHVLRTGEIGPIKIWRAR 710
Query: 214 -TKKGTTKVFYSVG 226
+ G ++ +S G
Sbjct: 711 KIQDGVIRLEFSAG 724
>sp|Q46AR9|ALAXM_METBF Alanyl-tRNA editing protein AlaX-M OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=alaXM PE=1 SV=1
Length = 243
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 41/219 (18%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
++L+ T+F+P+ GGQPSDTG ++ +F V VR +G + H E G L
Sbjct: 28 VVLDRTVFYPESGGQPSDTGKLVRESDGAEFNVLYVRKFNGDISH----EIDGENVSNGL 83
Query: 98 EKGKEVRLWVDESRRKLNSRPYV-----------EYKGSVPQNEL--------------- 131
+ G +V+ ++D RR + R + E + N+L
Sbjct: 84 KAGDKVKGFIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQSRVDFSLEVFD 143
Query: 132 QSKTKELELEANALISRGGKVMVAVLPYEEA-------SMLCGGCLPHYIPQGSTPRIVK 184
+ K E E AN LI++ V + ++ +EA + L G + + RIV+
Sbjct: 144 RDKFAEYEKIANDLIAQKSPVNLYLVSRKEAEEKLSRLTTLAKG----FSDEIKEVRIVE 199
Query: 185 LGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFY 223
+ CGGTHV + EI +K+ +++ K + + Y
Sbjct: 200 IEGVTIEACGGTHVKNTEEIKGVKIIKLQNKGKSNRRMY 238
>sp|Q18E76|SYA_HALWD Alanine--tRNA ligase OS=Haloquadratum walsbyi (strain DSM 16790)
GN=alaS PE=3 SV=1
Length = 923
Score = 57.4 bits (137), Expect = 8e-08, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 113/244 (46%), Gaps = 40/244 (16%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YYD+ + + ++ F+ D G ++L+ T+F+P+GGGQP+D G + + + +
Sbjct: 519 YYDDQTGTEFEAVVLDIFEQDTGYD-IVLDQTMFYPEGGGQPADHGTLTTEEETIE--IT 575
Query: 72 DVRSKDGIVFHYGVVENSGGEF---EMELEKGKEVRLW------VDESRRKL---NSRPY 119
DV+++DG++ H G+F ++++E+ + + + + RK+ + R
Sbjct: 576 DVKAQDGVILHQATENPGKGDFIRGQLDVERRRRLMQHHTATHIIGHAARKVLGDHVRQA 635
Query: 120 VEYKGSVPQ----------NELQSKTKELELEANALISRGGKVMVAVLPYEEAS------ 163
KG+ N +++KT +E AN +I + V EA
Sbjct: 636 GAQKGTDSARFDLTHYERINRIEAKT--IESVANDIIRQNISVRQDWPDRHEAENEHGFD 693
Query: 164 MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR-TKKGTTKVF 222
+ GG IP G R + +GD+ CGGTHV+ +I ++K+ + G ++
Sbjct: 694 LYQGG-----IPPGQNIRTITIGDDIQA-CGGTHVTRTGDIGTIKILTTEPVQDGVERIV 747
Query: 223 YSVG 226
++ G
Sbjct: 748 FAAG 751
>sp|Q8F0T4|SYA_LEPIN Alanine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=alaS
PE=3 SV=1
Length = 977
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 23 SKLISYFK-GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVF 81
SK +S K G G A++L T F+P+GGGQ D GF+ + FK V D + ++ +
Sbjct: 531 SKQVSSLKEGQAG--AIVLNKTPFYPEGGGQVGDIGFLRQGKNVFK--VFDTQKENDSII 586
Query: 82 HYGVVENSGGEF------EMELEKGKEVRLWVDES-------------------RRKLNS 116
H+G V + GEF E E+E + RL S + + S
Sbjct: 587 HFGEVLS--GEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVS 644
Query: 117 RPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ 176
Y+ + S P + + +++E N I + V L E+A G
Sbjct: 645 PEYLRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKK-TGAVATFGEKY 703
Query: 177 GSTPRIVKLGDNPGCPCGGTHVSDISEI 204
G R+V++GD CGGTHVS EI
Sbjct: 704 GERVRVVQMGDASIEFCGGTHVSRTGEI 731
>sp|P61703|SYA_LEPIC Alanine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=alaS PE=3 SV=1
Length = 977
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 23 SKLISYFK-GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVF 81
SK +S K G G A++L T F+P+GGGQ D GF+ + FK V D + ++ +
Sbjct: 531 SKQVSSLKEGQAG--AIVLNKTPFYPEGGGQVGDIGFLRQGKNVFK--VFDTQKENDSII 586
Query: 82 HYGVVENSGGEF------EMELEKGKEVRLWVDES-------------------RRKLNS 116
H+G V + GEF E E+E + RL S + + S
Sbjct: 587 HFGEVLS--GEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVS 644
Query: 117 RPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ 176
Y+ + S P + + +++E N I + V L E+A G
Sbjct: 645 PEYLRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKK-TGAVATFGEKY 703
Query: 177 GSTPRIVKLGDNPGCPCGGTHVSDISEI 204
G R+V++GD CGGTHVS EI
Sbjct: 704 GERVRVVQMGDASIEFCGGTHVSRTGEI 731
>sp|Q46I13|SYA_PROMT Alanine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=alaS PE=3 SV=1
Length = 886
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 45/237 (18%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRA--------LILESTIFHPQGGGQPSDTGFI 59
T+ + Y+ KL++TS +I FK ++ + +I+ T F+ + GGQ D G I
Sbjct: 460 TRFEGYE---KLETTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLI 516
Query: 60 IVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKG------------------- 100
D + V +VR K I H G+V E ++
Sbjct: 517 --TSQDLEVSVENVRKKKNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLL 574
Query: 101 -KEVRLWVDES---RRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAV 156
++L +D S R L S + + + P+ + +++E N I+ + +
Sbjct: 575 QSALKLSIDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKT 634
Query: 157 LPYEEASMLCGGCLPHYIPQ-GSTPRIVKLGDNPGCP---CGGTHVSDISEIISMKV 209
+P +EA + G L + + G R+V D PG CGGTHV+ S++ + K+
Sbjct: 635 MPIKEA--MAAGALAMFGEKYGDVVRVV---DVPGISMELCGGTHVTRTSQLGTFKI 686
>sp|Q12U25|SYA_METBU Alanine--tRNA ligase OS=Methanococcoides burtonii (strain DSM 6242)
GN=alaS PE=3 SV=1
Length = 923
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 45/251 (17%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD ++ + ++ F ++L++T+ +P+GGGQP+D G + V D K
Sbjct: 511 TKRLFYDEPNRMDFDAVVLEVFDNH-----IVLDNTLMYPEGGGQPADHGTLTVEDVVLK 565
Query: 68 FIVHDVRSKDGIVFH-YGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV------ 120
+ D + DG+V H +E+ E+ + KG V V+E RR ++R +
Sbjct: 566 VV--DTQMYDGVVVHTINEIED-----ELHIRKGDMVVGRVNEKRRMAHARHHTATHIIN 618
Query: 121 ----EYKGS----------VPQNEL---------QSKTKELELEANALISRGGKVMVAVL 157
E GS + L Q + ++E+ AN + + +++ +
Sbjct: 619 DAAREVLGSHIWQTGAQKFADRARLDISHYKRITQEEANQIEIIANHTVMKNKRIISDWM 678
Query: 158 PYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
EA G L +P G R++++G++ C GTH ++ + +K+ + R +
Sbjct: 679 DRTEAEQKYGFRLYQGGVPPGKMIRVLQVGNDIEA-CAGTHCTNTGLVGPIKILKTERIQ 737
Query: 216 KGTTKVFYSVG 226
G ++ Y+ G
Sbjct: 738 DGVERLEYAAG 748
>sp|B0SPT4|SYA_LEPBP Alanine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=alaS PE=3 SV=1
Length = 919
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVEN---SGGEF- 93
++L+ T F+ +GGGQ DTG++ F+F V D + ++ H G++ S G+
Sbjct: 492 IVLDKTPFYAEGGGQIGDTGYL--KKEGFQFQVQDTQKENDTFLHMGMILKGNLSVGDVV 549
Query: 94 --EMELEKGKEV-------RLWVDESRRKLNSR----------PYVEYKGSVPQNELQSK 134
E+E+E+ + + L RR L S Y+ + S P+ + +
Sbjct: 550 DSEIEVERRQNLANHHSGTHLLNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEE 609
Query: 135 TKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVKLGDNPGCPC 193
++E + N +S V VL +A G L + + GS R++ +GD C
Sbjct: 610 IIQIETDVNEAVSANIPVKTEVLEIGQAKE--SGALSMFDEKYGSVVRVISMGDKSKEFC 667
Query: 194 GGTHVSDISEI 204
GGTHVS+ EI
Sbjct: 668 GGTHVSNTKEI 678
>sp|B0SGD3|SYA_LEPBA Alanine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=alaS PE=3 SV=1
Length = 919
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVEN---SGGEF- 93
++L+ T F+ +GGGQ DTG++ F+F V D + ++ H G++ S G+
Sbjct: 492 IVLDKTPFYAEGGGQIGDTGYL--KKEGFQFQVQDTQKENDTFLHMGMILKGNLSVGDVV 549
Query: 94 --EMELEKGKEV-------RLWVDESRRKLNSR----------PYVEYKGSVPQNELQSK 134
E+E+E+ + + L RR L S Y+ + S P+ + +
Sbjct: 550 DSEIEVERRQNLANHHSGTHLLNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEE 609
Query: 135 TKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVKLGDNPGCPC 193
++E + N +S V VL +A G L + + GS R++ +GD C
Sbjct: 610 IIQIETDVNEAVSANIPVKTEVLEIGQAKE--SGALSMFDEKYGSVVRVISMGDKSKEFC 667
Query: 194 GGTHVSDISEI 204
GGTHVS+ EI
Sbjct: 668 GGTHVSNTKEI 678
>sp|Q2NEW4|SYA_METST Alanine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=alaS PE=3 SV=1
Length = 903
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TKL +YD++ + T+K++ + +IL TI++P+GGGQPSD G I + +
Sbjct: 488 TKLSFYDDLKQRTFTAKVLGVVDSN----KIILNQTIYYPEGGGQPSDIGTITRVNGEVL 543
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY 119
I + + DGIV H+ E+ E +++ G+E+ +D RR L +R +
Sbjct: 544 NITY-AQKVDGIVLHHVAKED---ESKLDNIVGEEITGEIDSKRRDLLTRNH 591
>sp|A9KMW7|SYA1_CLOPH Alanine--tRNA ligase 1 OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=alaS1 PE=3 SV=1
Length = 879
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 39/202 (19%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
+I++ T F+ GGQ +D GFI+ D++F+ + ++ K G V H G V + G F++
Sbjct: 492 IIVDETPFYATMGGQTADIGFIVGKDAEFE-VEDTIKLKGGRVGHLGTV--TKGSFKV-- 546
Query: 98 EKGKEVRLWVDESRRKLNSR-----------------PYVEYKGSVPQNE--------LQ 132
G+ V L +D +R+ + +VE GS +E
Sbjct: 547 --GETVTLTIDTQKRQAIGKNHSATHLLQKALRNVLGSHVEQAGSFVTSERLRFDFTHFS 604
Query: 133 SKTKE----LELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVKLGD 187
+ TKE +E N I++ V+ V+ E+A G + + + G + R+V +GD
Sbjct: 605 ALTKEEIAKVEAMVNEEIAKNVPVVTDVMSVEDAKK--SGAMALFGEKYGDSVRVVTMGD 662
Query: 188 NPGCPCGGTHVSDISEIISMKV 209
CGGTHV++ I K+
Sbjct: 663 FSKELCGGTHVANTGSITVFKI 684
>sp|Q2FQD6|SYA_METHJ Alanine--tRNA ligase OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=alaS PE=3 SV=1
Length = 916
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 45/250 (18%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ +Y+ ++ +K++ F G + ++L+ T+F+P+GGGQP DTG + D
Sbjct: 513 TRKLFYERPGSMEFEAKVLEIFDG----QYVVLDQTLFYPEGGGQPGDTGLFLTPDG--- 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
VR D I ++ G + KG +R +DE RR R +
Sbjct: 566 ---LTVRVCDTIKLGESILHRIDGG---NVRKGDMIRGILDEDRRLSLMRHHTATHILLH 619
Query: 122 ----------YKGSVPQNELQSKT-------------KELELEANALISRGGKVMVAVLP 158
++ + E S+ K++E+ AN L+ +A
Sbjct: 620 AAKEVLGAHIHQAGAQKGEYSSRIDIRHYKHITPEELKKIEVVANRLVMANSSTSIAWED 679
Query: 159 YEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
+A G CL +P GS R+VK+ + C GTH + +I ++ + ++ +
Sbjct: 680 RTDAEQKYGFCLYQGGVPPGSRIRVVKVAGDIEA-CAGTHCAHTGDIGTISIIRVEHVQD 738
Query: 217 GTTKVFYSVG 226
G ++ ++ G
Sbjct: 739 GVERLEFAAG 748
>sp|Q5UZE6|SYA_HALMA Alanine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 /
DSM 3752 / JCM 8966 / VKM B-1809) GN=alaS PE=3 SV=1
Length = 927
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 25/238 (10%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YY++ + + + ++ F D+ ++L+ T+F+P+GGGQP D G ++ D V
Sbjct: 522 YYEDQQRTEFEAVVLEVFDRDEDTYDVVLDQTMFYPEGGGQPPDKG--TLSTDDVSAEVT 579
Query: 72 DVRSKDGIVFHYGVVENSGGEF-EMELEKGKEVRLW---------VDESRRKLNS--RPY 119
DV+ ++ H + GEF +++ + RL + +R+ L R
Sbjct: 580 DVQQYGDVIVHTCDDDPGKGEFVRGQVDATRRQRLMQHHTATHIVIHSARQVLGEHVRQA 639
Query: 120 VEYKGSVP--------QNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLP 171
KG+ ++ + K KE+E AN +I V +A G L
Sbjct: 640 GAQKGTDSARIDIRHYESVSREKVKEIERLANDIIQDNITVSQEWPDRNDAEERYGFDLY 699
Query: 172 H-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVGS 227
IP G R++ +GD+ CGGTHV+ +I ++K+ R + G ++ ++ G+
Sbjct: 700 QGGIPAGEQIRLITVGDDVQA-CGGTHVARTGDIGAVKLLNTERIQDGVIRLTFAAGN 756
>sp|Q7NI36|SYA_GLOVI Alanine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=alaS PE=3 SV=1
Length = 871
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 54/234 (23%)
Query: 29 FKGDDGRRA-------LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVF 81
F+G+ RA L+L+ T F+P+GGGQ D G++ + D + DV+ +D ++
Sbjct: 466 FEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYL--SGPDLLVRIEDVQKRDTVIL 523
Query: 82 HYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKG 124
H G +E + G V+ +D + R+ + + V+ +G
Sbjct: 524 HTGRIERG------TVATGDSVQAQIDLADRRRSQAHHTATHLLQAALKKVLGESVQQQG 577
Query: 125 SV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPH 172
S+ P+ Q++ +++E N I+ + V+P ++A G L
Sbjct: 578 SLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVMPIDQAK--ARGALAF 635
Query: 173 YIPQ-GSTPRIVKLGDNPGCP---CGGTHVSDISEIISMK-VSQIRTKKGTTKV 221
+ + GS R++ D PG CGGTHV + +EI K VS+ G ++
Sbjct: 636 FGEKYGSEVRVI---DVPGVSIELCGGTHVRNTAEIGLFKMVSETGIASGVRRI 686
>sp|A9M198|SYA_NEIM0 Alanine--tRNA ligase OS=Neisseria meningitidis serogroup C (strain
053442) GN=alaS PE=3 SV=2
Length = 874
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 49/229 (21%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I S+ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIF--SSENRFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP----------- 118
V D + VF V+ SG L+ G V VD+ R N R
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 119 ------YVEYKGSV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYE 160
+VE KGS+ PQ + E+E N + V A++ E
Sbjct: 573 RDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSME 632
Query: 161 EASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
+A G + G R++++G CGGTHVS +I K+
Sbjct: 633 DAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|Q9JTG4|SYA_NEIMA Alanine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=alaS PE=3 SV=1
Length = 874
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 49/229 (21%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I S+ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIF--SSENRFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP----------- 118
V D + VF V+ SG L+ G V VD+ R N R
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 119 ------YVEYKGSV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYE 160
+VE KGS+ PQ + E+E N + V A++ E
Sbjct: 573 RDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSME 632
Query: 161 EASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
+A G + G R++++G CGGTHVS +I K+
Sbjct: 633 DAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|Q4FMX6|SYA_PELUB Alanine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=alaS PE=3 SV=1
Length = 889
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 51/243 (20%)
Query: 17 LKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK 76
L L++ ++ + D+G +I T F+ + GGQ +DTG I++ F+F V DV+ K
Sbjct: 471 LILKNNKEVQDLQENDEG--IIITNQTPFYGESGGQVADTG--IISKEAFEFEVSDVQKK 526
Query: 77 DGIVF-HYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY---------------- 119
G +F HYG V+ + + V L +D RR N R Y
Sbjct: 527 LGDLFVHYGKVKRGSVKLK------DNVELKIDTQRRN-NIRAYHSATHLLHEALRRVLG 579
Query: 120 --VEYKGSVPQNEL------------QSKTKELELEANALISRGGKVMVAVLPYEEASML 165
V KGS+ Q++ + +++E N++I + +V ++ +EA +
Sbjct: 580 EHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEA--V 637
Query: 166 CGGCLPHYIPQ-GSTPRIVKLGDNPGC-----PCGGTHVSDISEIISMK-VSQIRTKKGT 218
G L + + G R++ +GD G CGGTHV + ++I K +SQ G
Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697
Query: 219 TKV 221
+V
Sbjct: 698 RRV 700
>sp|Q9JYG6|SYA_NEIMB Alanine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=alaS PE=3 SV=1
Length = 874
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 49/229 (21%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I ++ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIFSGEN--RFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP----------- 118
V D + VF V+ SG L+ G V VD+ R N R
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 119 ------YVEYKGSV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYE 160
+VE KGS+ PQ + E+E N I V A++ E
Sbjct: 573 RDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSME 632
Query: 161 EASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
+A G + G R++++G CGGTHVS +I K+
Sbjct: 633 DAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|A6UUN3|SYA_META3 Alanine--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=alaS PE=3 SV=1
Length = 910
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 35/251 (13%)
Query: 1 MNTEVIP-TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGF- 58
+N + IP T+L +Y N + + +K++ +IL+ T+F+P+GGGQ D G
Sbjct: 512 INLDDIPETELLFYSNPYQKEVEAKILKIIGN-----VVILDKTVFYPEGGGQKYDIGLI 566
Query: 59 -----IIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRK 113
I V ++ + H V + DG+ ++ E + L + ++ + K
Sbjct: 567 GNKKIISVQKNNNGIVCHTVENTDGLNEEDTIIAKLNWENRLNLMRNHTATHIINAAASK 626
Query: 114 LNSRPYVEYKGSVPQNE-----------LQSKTKELELEANALISRGGKVMVAVLPYEEA 162
+ + + +V N+ + + KE+E AN ++ V V+ EA
Sbjct: 627 VLGKHIWQTGSNVESNKARLDITHYKRITREEIKEIEKIANQIVLDAIPVKSTVMGRNEA 686
Query: 163 S------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
+ GG +P G+ RI+ + CGGTH + SE+ +K+ + R +
Sbjct: 687 EQKYGFKIYQGGVVP-----GNILRILDIEGVDVEACGGTHCQNTSEVGYIKILKTERIQ 741
Query: 216 KGTTKVFYSVG 226
G ++ Y+ G
Sbjct: 742 DGVERLEYTSG 752
>sp|A1KV20|SYA_NEIMF Alanine--tRNA ligase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=alaS PE=3
SV=1
Length = 874
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 49/229 (21%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I ++ +F
Sbjct: 462 QTESKVLALYKDGEQVDELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIFSGEN--RFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP----------- 118
V D + VF V+ SG L+ G V VD+ R N R
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 119 ------YVEYKGSV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYE 160
+VE KGS+ PQ + E+E N + V A++ E
Sbjct: 573 RDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSME 632
Query: 161 EASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
+A G + G R++++G CGGTHVS +I K+
Sbjct: 633 DAQK-TGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|Q8U425|SYA_PYRFU Alanine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=alaS PE=3 SV=1
Length = 914
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ YY++ + +K++ + ++L+ T F+P+GGGQP DTG ++V + K
Sbjct: 516 TRTLYYEDPFMKEFDAKVLKVIED-----WVVLDQTAFYPEGGGQPYDTGILVVDGEEVK 570
Query: 68 F---------IVHDVRSKDGIVFHYGVVENSGGEFEMELEK-----------GKEVRL-- 105
I+H V + +F G + + ++E ++ G VR+
Sbjct: 571 VTNVQKVGKVILHKVERPE--LFKEGTIVHGRIDWERRIQHMRHHTGTHVLMGALVRVLG 628
Query: 106 ---WVDESRRKLN-SRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEE 161
W S+ + +R + + + E+ KE+E AN ++ +V LP E
Sbjct: 629 KHVWQAGSQLSTDWARLDITHYKRISDEEI----KEIERLANRVVMENRRVRWEWLPRTE 684
Query: 162 AS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RT 214
A + GG +P G RI+ + D CGGTH+ I +K+ + R
Sbjct: 685 ADEKYGFRLYQGGVVP-----GRIIRILNIEDWDVQACGGTHLPSTGLIGPIKILRTERI 739
Query: 215 KKGTTKVFYSVGS 227
+ G ++ ++ G
Sbjct: 740 QDGVERIIFACGE 752
>sp|Q5F7C4|SYA_NEIG1 Alanine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825 /
FA 1090) GN=alaS PE=3 SV=1
Length = 874
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 59/234 (25%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I ++ +F
Sbjct: 462 QTESKVLALYKDGEQVVELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIFAGEN--RFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP----------- 118
V D + VF V+ SG L+ G + VD+ R N R
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSITAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 119 ------YVEYKGSV------------PQNELQSKTKELELEANALISRGGKVMVAVLPYE 160
+VE KGS+ PQ + E+E N I V A++ E
Sbjct: 573 RDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSME 632
Query: 161 EAS-----MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
+A ML G G R++++G CGGTHVS +I K+
Sbjct: 633 DAQKTDAMMLFGE------KYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,913,901
Number of Sequences: 539616
Number of extensions: 3936713
Number of successful extensions: 10662
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 478
Number of HSP's that attempted gapping in prelim test: 9903
Number of HSP's gapped (non-prelim): 899
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)