Query 027168
Match_columns 227
No_of_seqs 169 out of 1328
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2872 Predicted metal-depend 100.0 5E-51 1.1E-55 340.9 21.8 207 7-227 1-236 (241)
2 PLN02961 alanine-tRNA ligase 100.0 4.6E-50 1E-54 335.7 24.7 190 36-225 3-223 (223)
3 TIGR03683 A-tRNA_syn_arch alan 100.0 7.5E-48 1.6E-52 373.2 24.5 205 4-227 497-736 (902)
4 PRK13902 alaS alanyl-tRNA synt 100.0 1.3E-47 2.8E-52 371.5 24.4 205 4-227 493-732 (900)
5 COG0013 AlaS Alanyl-tRNA synth 100.0 6.9E-45 1.5E-49 345.5 24.2 210 5-227 454-704 (879)
6 TIGR00344 alaS alanine--tRNA l 100.0 8.9E-45 1.9E-49 350.8 24.1 207 5-227 449-697 (851)
7 PRK00252 alaS alanyl-tRNA synt 100.0 1.3E-43 2.9E-48 343.7 24.4 204 7-227 444-690 (865)
8 PLN02900 alanyl-tRNA synthetas 100.0 1.9E-43 4.1E-48 342.9 24.5 208 6-227 486-737 (936)
9 KOG0188 Alanyl-tRNA synthetase 100.0 1.4E-34 3.1E-39 266.4 13.6 199 20-227 471-711 (895)
10 KOG2105 Predicted metal-depend 100.0 7.6E-33 1.7E-37 232.4 12.2 195 11-226 14-246 (415)
11 PRK01584 alanyl-tRNA synthetas 99.8 4.5E-18 9.8E-23 158.6 10.8 97 124-225 495-592 (594)
12 PF01411 tRNA-synt_2c: tRNA sy 99.7 1.8E-17 3.9E-22 155.0 9.0 93 8-111 452-552 (552)
13 PF07973 tRNA_SAD: Threonyl an 99.6 4.4E-16 9.6E-21 97.5 4.5 43 180-222 1-44 (44)
14 PRK12305 thrS threonyl-tRNA sy 99.5 1E-13 2.2E-18 130.9 9.8 96 125-226 49-157 (575)
15 smart00863 tRNA_SAD Threonyl a 99.5 3.1E-14 6.7E-19 89.2 4.1 43 180-222 1-44 (44)
16 PRK00413 thrS threonyl-tRNA sy 99.4 2.8E-12 6.1E-17 122.5 10.5 97 125-226 111-222 (638)
17 PLN02837 threonine-tRNA ligase 99.3 3.6E-12 7.7E-17 121.2 9.1 86 125-214 85-178 (614)
18 PRK12444 threonyl-tRNA synthet 99.3 1.2E-11 2.6E-16 118.3 10.0 96 125-225 115-225 (639)
19 PLN02908 threonyl-tRNA synthet 99.1 1.8E-10 4E-15 110.9 9.9 85 125-214 164-253 (686)
20 TIGR00418 thrS threonyl-tRNA s 99.0 1.2E-09 2.5E-14 103.2 8.3 97 125-225 40-150 (563)
21 COG0441 ThrS Threonyl-tRNA syn 98.7 2.7E-08 5.8E-13 93.5 7.6 83 124-213 66-150 (589)
22 PRK14799 thrS threonyl-tRNA sy 97.2 0.00042 9.1E-09 65.3 4.9 67 156-225 45-118 (545)
23 COG4014 Uncharacterized protei 70.6 6.7 0.00015 27.9 3.4 28 20-47 21-48 (97)
24 PF09871 DUF2098: Uncharacteri 32.5 75 0.0016 22.8 3.6 27 20-47 15-41 (91)
25 PF10750 DUF2536: Protein of u 30.8 89 0.0019 21.1 3.5 22 135-156 20-41 (68)
26 COG0307 RibC Riboflavin syntha 27.3 3.6E+02 0.0078 22.3 9.5 85 20-114 101-188 (204)
27 cd04089 eRF3_II eRF3_II: domai 22.5 2.6E+02 0.0055 18.9 5.3 10 98-107 57-66 (82)
28 COG0146 HyuB N-methylhydantoin 20.6 4.6E+02 0.01 25.2 7.5 28 34-61 456-485 (563)
No 1
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=5e-51 Score=340.94 Aligned_cols=207 Identities=31% Similarity=0.493 Sum_probs=171.8
Q ss_pred cceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEe
Q 027168 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVV 86 (227)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~ 86 (227)
||++||++|+|..+++|+|+++.. ..|+||+|+|||+|||||+|+|+|.++++... +.++.+.+..|+|+...
T Consensus 1 ~T~~ly~~D~y~~e~~~~v~~v~~-----~~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~--~~~~~~~~~~I~H~~~~ 73 (241)
T COG2872 1 MTEKLYYDDSYLKEFEATVVDVED-----NEIVLDRTIFYPTGGGQPGDTGTLIWAGGEYV--VEDVTKDGEEIVHVLAE 73 (241)
T ss_pred CccceeccccccccceEEEEEEeC-----CeEEEEeccccCCCCCCcCCceEEEeCCceEE--EEEEEecceEEEEEecC
Confidence 699999999999999999999985 28999999999999999999999999876554 88888888899997422
Q ss_pred ecCCcccccccCCCCEEEEEEeHHHHhhhhcccccc-----------------------cCCC--ChhHhhhhHHHHHHH
Q 027168 87 ENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEY-----------------------KGSV--PQNELQSKTKELELE 141 (227)
Q Consensus 87 ~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~~~-----------------------~g~l--~~~~l~~~~~~IE~~ 141 (227)
...+++|++|.+.|||+|||+|||.|..+ .+.+ +.++.+..+++++++
T Consensus 74 -------~~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~~~~g~~i~~d~~~iD~~~e~~~~~~~~v~~~ 146 (241)
T COG2872 74 -------HAKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALTTGFEIGEDYARIDFDGEDTEDEIEEVEAL 146 (241)
T ss_pred -------cccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccceeecceecccccccccccccchhhHHHHHHH
Confidence 13678999999999999999999955321 1111 222233455689999
Q ss_pred HHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCC-CC-CCCcEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCC
Q 027168 142 ANALISRGGKVMVAVLPYEEASMLCGG-CLPHYI-PQ-GSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKG 217 (227)
Q Consensus 142 ~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~-~~-~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~ 217 (227)
+|++|++|+||...+++++||.+.++. ++.... +. .+.+|+|+|+|+|.+|||||||+||+|||.|+|+++++ +|+
T Consensus 147 ~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e~k~k~ 226 (241)
T COG2872 147 ANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEKKGKG 226 (241)
T ss_pred HHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEEEecCc
Confidence 999999999999999999999998763 222222 22 35899999999999999999999999999999999976 568
Q ss_pred eEEEEEEEcC
Q 027168 218 TTKVFYSVGS 227 (227)
Q Consensus 218 ~~Ri~~~~~~ 227 (227)
..||+|.+++
T Consensus 227 ~~Rv~f~~~~ 236 (241)
T COG2872 227 NRRVYFTLGE 236 (241)
T ss_pred eEEEEEEecc
Confidence 9999999975
No 2
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=4.6e-50 Score=335.71 Aligned_cols=190 Identities=64% Similarity=1.046 Sum_probs=159.5
Q ss_pred EEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhh
Q 027168 36 RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLN 115 (227)
Q Consensus 36 ~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~ 115 (227)
+.|+||+|+|||+|||||+|+|+|...+++..|.|.+|++.+|.++|++.+..+..+....|.+|++|.+.|||+||+.+
T Consensus 3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~~ 82 (223)
T PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKLH 82 (223)
T ss_pred eEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhhh
Confidence 68999999999999999999999987544456889999999999999976653111123468899999999999999999
Q ss_pred hccccc-------------------------------ccCCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhh
Q 027168 116 SRPYVE-------------------------------YKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM 164 (227)
Q Consensus 116 m~~~~~-------------------------------~~g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~ 164 (227)
||.|.. +.+.++.+++.+.+.+||+++|++|++++||++.++++++|++
T Consensus 83 m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~~~~~v~~~~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~ 162 (223)
T PLN02961 83 SRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYKGKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAE 162 (223)
T ss_pred hccCcHHHHHHHHHHHcCCCccccccccccCCccceeecccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHH
Confidence 994421 1223455566445678999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEeeCCeEEEEEEE
Q 027168 165 LCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSV 225 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~~~~~~Ri~~~~ 225 (227)
+.+..+|.+.+..+.+|+|+|+++|.+|||||||.||+|||.|+|+++++++|..||+|.+
T Consensus 163 ~~~~~~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~~~kg~~Rv~~~~ 223 (223)
T PLN02961 163 LCGGSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIRVKKGVTRVSYTI 223 (223)
T ss_pred hcCCcCCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEEecCCEEEEEEeC
Confidence 8665566655556789999999999999999999999999999999999889999999974
No 3
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=7.5e-48 Score=373.18 Aligned_cols=205 Identities=28% Similarity=0.449 Sum_probs=175.2
Q ss_pred CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEE
Q 027168 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY 83 (227)
Q Consensus 4 ~~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~ 83 (227)
++++|+++||+++|+.+++|+|+++.. .+|+||+|+|||+|||||+|+|+|..+++ .+.|.+|++.+|.++|+
T Consensus 497 ~~~~T~~l~y~~~~~~e~~a~Vl~i~~-----~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~--~~~V~dv~k~~g~i~H~ 569 (902)
T TIGR03683 497 DLPETRRLFYEDPTMREFEAKVLGVFD-----NYVVLDQTAFYPEGGGQPADTGYLITNGG--KIRVVDVQKVGGVIVHK 569 (902)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCCc--EEEEEEEEEECCEEEEE
Confidence 468899999999999999999999983 47999999999999999999999987643 46699999999999998
Q ss_pred EEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168 84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE 130 (227)
Q Consensus 84 ~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~ 130 (227)
+. . +.+.+|++|.+.|||+||+++||.| +.|.| .+|+++
T Consensus 570 ~~--~------~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 641 (902)
T TIGR03683 570 VD--G------EGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEE 641 (902)
T ss_pred eC--C------CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHH
Confidence 52 1 2378899999999999999999943 22333 245556
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168 131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209 (227)
Q Consensus 131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I 209 (227)
+. +||+.+|++|++|+||++.+++++||++..+..+ +...++++.||||+||++|.++||||||.|||+||.|+|
T Consensus 642 l~----~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI 717 (902)
T TIGR03683 642 IK----EIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKI 717 (902)
T ss_pred HH----HHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEE
Confidence 55 6999999999999999999999999998765322 233456788999999999999999999999999999999
Q ss_pred EEEEe-eCCeEEEEEEEcC
Q 027168 210 SQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 210 ~~~~~-~~~~~Ri~~~~~~ 227 (227)
++.++ ++|..||+|.+|+
T Consensus 718 ~~~~~i~~Gv~RIe~v~G~ 736 (902)
T TIGR03683 718 LKTERIQDGVERIEFAAGE 736 (902)
T ss_pred EEEEEecCCeEEEEEEECh
Confidence 99986 6789999999984
No 4
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-47 Score=371.45 Aligned_cols=205 Identities=31% Similarity=0.461 Sum_probs=174.4
Q ss_pred CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEE
Q 027168 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY 83 (227)
Q Consensus 4 ~~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~ 83 (227)
++|+|+++||+++|+++++|+|+++.. .+|+||+|+|||+|||||+|+|+|..++ ..+.|.+|++.+|.++|+
T Consensus 493 ~~~~T~~l~y~~~~~~~~~a~Vl~i~~-----~~vvLD~T~FYpEgGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~i~H~ 565 (900)
T PRK13902 493 DLPETEKLFYEDPYMREFEAKVLGVID-----NYVVLDQTAFYPEGGGQPADTGVLIVDG--KGYKVVDVQKVGGVIVHV 565 (900)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCC--cEEEEEEEEEECCEEEEE
Confidence 467899999999999999999999984 3899999999999999999999998764 346699999999999998
Q ss_pred EEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168 84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE 130 (227)
Q Consensus 84 ~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~ 130 (227)
+ . .+.+..|++|.+.|||+||+++||.| +.|.| .+++++
T Consensus 566 ~--~------~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 637 (900)
T PRK13902 566 L--E------GEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREE 637 (900)
T ss_pred e--C------CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHH
Confidence 5 2 12344599999999999999999943 22333 345566
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168 131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209 (227)
Q Consensus 131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I 209 (227)
+. +||+.+|++|++|+||++.+++++||.+.++..+ +...++++.||||+||++|.++||||||.|||+||.|+|
T Consensus 638 l~----~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI 713 (900)
T PRK13902 638 VK----EIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKI 713 (900)
T ss_pred HH----HHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEE
Confidence 65 5999999999999999999999999998765322 233466788999999999999999999999999999999
Q ss_pred EEEEe-eCCeEEEEEEEcC
Q 027168 210 SQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 210 ~~~~~-~~~~~Ri~~~~~~ 227 (227)
++.++ ++|..||+|.+|+
T Consensus 714 ~~~e~i~~Gv~RIe~v~G~ 732 (900)
T PRK13902 714 LKTERIQDGVERLEFAAGD 732 (900)
T ss_pred EEEEEecCCeEEEEEEECh
Confidence 99986 6788999999984
No 5
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-45 Score=345.49 Aligned_cols=210 Identities=30% Similarity=0.353 Sum_probs=174.3
Q ss_pred CCcceeceeccccceEeeeEEEEEEec------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeC-
Q 027168 5 VIPTKLDYYDNMLKLQSTSKLISYFKG------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD- 77 (227)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~- 77 (227)
.++|+++||++++.. +.+.++..... +++..+|+||+|+||||||||++|+|+|...+ +..|.|.+|++..
T Consensus 454 ~~~tef~gY~~~~~~-~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~-~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPETEFLGYDDLEME-FKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDG-GGRFEVTDVQKVGN 531 (879)
T ss_pred CCCceeeecccccce-EEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecC-CcEEEEEEEEEcCC
Confidence 578999999998655 44444443221 23568999999999999999999999999875 5678899999987
Q ss_pred CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhcc-----------------cccccCC---------------
Q 027168 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP-----------------YVEYKGS--------------- 125 (227)
Q Consensus 78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~-----------------~~~~~g~--------------- 125 (227)
|.++|.+.+. .+.+++|+.|.+.|||+||+++|++ |+.|.||
T Consensus 532 ~~~vH~~~~~------~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~ 605 (879)
T COG0013 532 GVIVHKGKVE------SGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYK 605 (879)
T ss_pred ceEEEEEeec------cCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCC
Confidence 8999998765 4689999999999999999999994 4557775
Q ss_pred -CChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCcccccccccc
Q 027168 126 -VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI 204 (227)
Q Consensus 126 -l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eI 204 (227)
+|.+||. +||..+|++|++|+||.+.++++++|++.-...|... .+++.||||++|+||.++||||||.|||+|
T Consensus 606 ~it~Eel~----~IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGe-kY~~~VRVV~ig~~SvElCGGTHv~~Tg~I 680 (879)
T COG0013 606 ALTAEELK----EIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGE-KYGDEVRVVEIGDFSVELCGGTHVSNTGDI 680 (879)
T ss_pred CCCHHHHH----HHHHHHHHHHHcCCceeEEEccHHHHHHhChHhhcCC-cCCCeEEEEEECCceeeccCCcccCCccce
Confidence 3667776 5999999999999999999999999998721122222 334789999999999999999999999999
Q ss_pred ccEEEEEEEe-eCCeEEEEEEEcC
Q 027168 205 ISMKVSQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 205 g~~~I~~~~~-~~~~~Ri~~~~~~ 227 (227)
|.|+|++.+. ..|..||++.+|.
T Consensus 681 G~fkI~~e~~i~aGVrRIeavtG~ 704 (879)
T COG0013 681 GLFKIISEEGIAAGVRRIEAVTGE 704 (879)
T ss_pred eeEEEEEecccccCeEEEEEEcCH
Confidence 9999999985 6799999999873
No 6
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=8.9e-45 Score=350.76 Aligned_cols=207 Identities=31% Similarity=0.406 Sum_probs=172.2
Q ss_pred CCcceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe
Q 027168 5 VIPTKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK 76 (227)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~--------~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~ 76 (227)
.++|+++||++ .+++|+|+++.. ..++..+|+||+|+|||+|||||+|+|+|..+ +..|.|.+|++.
T Consensus 449 ~~~t~~l~Y~~---~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~--~~~~~V~dv~~~ 523 (851)
T TIGR00344 449 YPATEFLGYED---LEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIAN--DGKFRVVDVQKP 523 (851)
T ss_pred cCCccccceec---ccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecC--CcEEEEEEEEEE
Confidence 36799999998 689999999984 12446899999999999999999999999854 345679999999
Q ss_pred CCEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhcccc-----------------cccC---------------
Q 027168 77 DGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV-----------------EYKG--------------- 124 (227)
Q Consensus 77 ~g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~-----------------~~~g--------------- 124 (227)
+|.++|++.+. .+.+.+|++|.+.|||+||+.+|+.|. .+.|
T Consensus 524 ~g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~ 597 (851)
T TIGR00344 524 NGVVFHFGEVE------GGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHY 597 (851)
T ss_pred CCEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCC
Confidence 99999987654 246789999999999999999999431 2222
Q ss_pred -CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccc
Q 027168 125 -SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISE 203 (227)
Q Consensus 125 -~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~e 203 (227)
.+|++++. +||+.||++|++|+||.+.+++++||.+.++..+.. -.+++.||||+||++|.+|||||||.||++
T Consensus 598 ~~lt~eel~----~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~~~~~-e~y~~~VRVV~Ig~~d~e~CgGTHV~nTge 672 (851)
T TIGR00344 598 RALTREELE----KIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFG-EKYGEKVRVVSVGDVSVELCGGTHVRNTGE 672 (851)
T ss_pred CCCCHHHHH----HHHHHHHHHHHhCCceEEEEeCHHHHHhcchhhhcC-CCCCCeEEEEEECCeeccCCCCCccCChhh
Confidence 34556665 599999999999999999999999999875432211 123578999999999999999999999999
Q ss_pred cccEEEEEEEe-eCCeEEEEEEEcC
Q 027168 204 IISMKVSQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 204 Ig~~~I~~~~~-~~~~~Ri~~~~~~ 227 (227)
||.|+|++.++ ++|..||+|.+|+
T Consensus 673 Ig~~kI~~~~~~~~G~~RIe~v~G~ 697 (851)
T TIGR00344 673 IGLFKIVKESGIAAGVRRIEAVTGN 697 (851)
T ss_pred CeEEEEEEEeEecCCeEEEEEEEcH
Confidence 99999999985 5688999999984
No 7
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-43 Score=343.69 Aligned_cols=204 Identities=31% Similarity=0.399 Sum_probs=168.2
Q ss_pred cceeceeccccceEeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe-C
Q 027168 7 PTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-D 77 (227)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~-~ 77 (227)
+|+++||++ .+++|+|+++... .++.++|+||+|+|||+|||||+|+|+|.. + ..|.|.+|++. +
T Consensus 444 ~t~f~~Y~~---~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~--~~~~V~~v~~~~~ 517 (865)
T PRK00252 444 ATEFVGYDT---LEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-G--GVFEVTDTQKPPN 517 (865)
T ss_pred CCeeeeeee---ccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-C--cEEEEEEEEEccC
Confidence 578888876 5889999999851 244589999999999999999999999976 3 35669999997 9
Q ss_pred CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------cccc----------------C
Q 027168 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYK----------------G 124 (227)
Q Consensus 78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~----------------g 124 (227)
|.++|++.+. .+.+.+|++|.+.|||+||+.+|+.| +.+. +
T Consensus 518 g~i~H~~~~~------~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~ 591 (865)
T PRK00252 518 GLIVHRGKVE------EGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFE 591 (865)
T ss_pred CEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCC
Confidence 9999997553 24578999999999999999999943 1222 2
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCcccccccccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI 204 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eI 204 (227)
.++++++. +||+.||++|++|+||++.+++++||.+.....+.. .++++.||+|+||++|.+|||||||+|||+|
T Consensus 592 ~lt~eel~----~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~~~~~~-~~y~~~VRVV~Ig~~d~~~CgGTHV~nTgeI 666 (865)
T PRK00252 592 ALTPEELR----KIEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFG-EKYGDEVRVVSIGDFSIELCGGTHVSNTGDI 666 (865)
T ss_pred CCCHHHHH----HHHHHHHHHHHhCCCeEEEEeCHHHHHhCCchhhcc-ccCCCeEEEEEECCceeeCCCCCccCCcccC
Confidence 34566665 599999999999999999999999999854322211 1346789999999999999999999999999
Q ss_pred ccEEEEEEEe-eCCeEEEEEEEcC
Q 027168 205 ISMKVSQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 205 g~~~I~~~~~-~~~~~Ri~~~~~~ 227 (227)
|.|+|++.++ ++|..||+|.+|+
T Consensus 667 g~~kI~~~~~~~~g~~RI~~v~G~ 690 (865)
T PRK00252 667 GLFKIVSESGVAAGVRRIEAVTGE 690 (865)
T ss_pred eEEEEEEEeeecCCeEEEEEEECH
Confidence 9999999986 5688999999984
No 8
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.9e-43 Score=342.88 Aligned_cols=208 Identities=27% Similarity=0.358 Sum_probs=169.2
Q ss_pred CcceeceeccccceEeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeC
Q 027168 6 IPTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD 77 (227)
Q Consensus 6 ~~t~~ly~~~~y~~~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~ 77 (227)
++|++++|+.. .+++|+|+++... .++.++|+||+|+|||+|||||+|+|+|..+++ ..|.|.+|++.+
T Consensus 486 ~~t~f~gY~~~--~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~-~~~~V~dv~k~~ 562 (936)
T PLN02900 486 ATDDFLKYDWL--SDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-AVVEVSDVQKAG 562 (936)
T ss_pred CCCcccccccC--CccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCC-CEEEEEEEEEEC
Confidence 56899999874 2288999999742 234689999999999999999999999986542 146799999999
Q ss_pred CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccCC---------------
Q 027168 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKGS--------------- 125 (227)
Q Consensus 78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g~--------------- 125 (227)
|.++|++.+. .+.+.+|++|.+.|||+||+.+|+.| +.|.|+
T Consensus 563 g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 563 GFVLHIGTVT------EGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred CEEEEEEEec------cCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 9999987554 24678999999999999999999943 223333
Q ss_pred -CChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCC-CCCCCCcccccccc
Q 027168 126 -VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDN-PGCPCGGTHVSDIS 202 (227)
Q Consensus 126 -l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~-d~~~CgGTHV~nT~ 202 (227)
++++++. +||+.||++|++|+||++.+++++||.+..+. .+.. -.+.+.||+|+||++ |.++||||||.|||
T Consensus 637 ~lt~eel~----~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~-e~y~~~VRVV~Ig~~~d~elCGGTHV~nTg 711 (936)
T PLN02900 637 PMTPEELR----EVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFG-EKYPDPVRVVSVGGVYSMELCGGTHVSNTA 711 (936)
T ss_pred CCCHHHHH----HHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcC-CCCCCcEEEEEECCccceeCCCCCcCCccc
Confidence 4555555 69999999999999999999999999985431 1111 123468999999998 99999999999999
Q ss_pred ccccEEEEEEEe-eCCeEEEEEEEcC
Q 027168 203 EIISMKVSQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 203 eIg~~~I~~~~~-~~~~~Ri~~~~~~ 227 (227)
+||.|+|++.++ ++|..||+|.+|+
T Consensus 712 eIG~fkIls~~~~~~G~rRIe~v~G~ 737 (936)
T PLN02900 712 EAEAFKLLSEEGIAKGIRRITAVTGG 737 (936)
T ss_pred cCceEEEEEEeeecCCeEEEEEEEcH
Confidence 999999999986 5688899999984
No 9
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-34 Score=266.35 Aligned_cols=199 Identities=29% Similarity=0.476 Sum_probs=163.1
Q ss_pred EeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCC-CcEEEEEEEEEeCCEEEEEEEeecCC
Q 027168 20 QSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADS-DFKFIVHDVRSKDGIVFHYGVVENSG 90 (227)
Q Consensus 20 ~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~-~~~~~V~~v~~~~g~i~H~~~~~~~~ 90 (227)
.+.++|+++..+ .+++++|+||+|+||+|+|||.+|+|.|.+.|. ...|.|..++. +|+++|.+.+.
T Consensus 471 ~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l~--- 546 (895)
T KOG0188|consen 471 VCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVLE--- 546 (895)
T ss_pred cchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeeec---
Confidence 778888888652 367899999999999999999999999999753 44667777776 89999998764
Q ss_pred cccccccCCCCEEEEEEeHHHHhhhhccc----------------ccccCCC-ChhHhh-----------hhHHHHHHHH
Q 027168 91 GEFEMELEKGKEVRLWVDESRRKLNSRPY----------------VEYKGSV-PQNELQ-----------SKTKELELEA 142 (227)
Q Consensus 91 ~~~~~~l~~G~~v~~~iD~~rR~~~m~~~----------------~~~~g~l-~~~~l~-----------~~~~~IE~~~ 142 (227)
+.+.+|++|.+.+|.+||+.+|++| ++|+||+ ++|.++ +++.++|..+
T Consensus 547 ----~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ 622 (895)
T KOG0188|consen 547 ----GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKI 622 (895)
T ss_pred ----cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999965 2466653 333221 1344699999
Q ss_pred HHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECC---CCCCCCCccccccccccccEEEEEEE-eeCC
Q 027168 143 NALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGD---NPGCPCGGTHVSDISEIISMKVSQIR-TKKG 217 (227)
Q Consensus 143 n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~---~d~~~CgGTHV~nT~eIg~~~I~~~~-~~~~ 217 (227)
|++|.++.+|....+++++|+++.+. ...+.. +.++||||.+|. .+.++|||||+.|||+||.|.|++.+ ..+|
T Consensus 623 ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~-YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakg 701 (895)
T KOG0188|consen 623 NEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEV-YPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKG 701 (895)
T ss_pred HHHHhcCCceEEEecCHHHHhcCCCcccccCCc-cCCceEEEEeccccccceeecCCcccccccccceEEEechhhhhhc
Confidence 99999999999999999999998763 223332 237899999985 68899999999999999999999997 4789
Q ss_pred eEEEEEEEcC
Q 027168 218 TTKVFYSVGS 227 (227)
Q Consensus 218 ~~Ri~~~~~~ 227 (227)
.+||....|+
T Consensus 702 irRivavTG~ 711 (895)
T KOG0188|consen 702 IRRIVAVTGK 711 (895)
T ss_pred eeEEEEeccH
Confidence 9999988764
No 10
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=7.6e-33 Score=232.39 Aligned_cols=195 Identities=25% Similarity=0.349 Sum_probs=153.3
Q ss_pred ceeccccceEeeeEEEEEEecCC-----CeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEE
Q 027168 11 DYYDNMLKLQSTSKLISYFKGDD-----GRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV 85 (227)
Q Consensus 11 ly~~~~y~~~~~a~Vl~i~~~~~-----~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~ 85 (227)
..+.+++++.|++.|++|.+.++ ..+.+.|.+|+.||+|||||+|.|++.+ .. |..|.+.+-..-|++
T Consensus 14 ~~~~~~~~~dfkt~vvsc~p~~~kk~eieg~~i~lqdtiLfpegggqp~d~gf~~~----v~--V~~VsR~G~~A~H~~- 86 (415)
T KOG2105|consen 14 ACQRNSFLFDFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKI----VE--VSHVSRFGLHAKHHV- 86 (415)
T ss_pred ccchhhhhhhccccccccccccCCcceeecceeeeeeeEeccCCCCCCCccccccc----ee--EEEeeccccchhhcc-
Confidence 45677888899999999987432 3489999999999999999999999964 34 888988877777863
Q ss_pred eecCCcccccccCCCCEEEEEEeHHHHhhhhcccccc------------------------------cCCCChhHhhhhH
Q 027168 86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEY------------------------------KGSVPQNELQSKT 135 (227)
Q Consensus 86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~~~------------------------------~g~l~~~~l~~~~ 135 (227)
..++.+|.+|.+.|||+||+++||.|..| .-+++.+++.
T Consensus 87 --------~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~sa~e~~~~~mTaeqva--- 155 (415)
T KOG2105|consen 87 --------NDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVA--- 155 (415)
T ss_pred --------CCCCCCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeeccceeeccccCCCCccHHHHH---
Confidence 35789999999999999999999955322 1135677776
Q ss_pred HHHHHHHHHHHHcCCceEEEEcCHHH--HhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEE
Q 027168 136 KELELEANALISRGGKVMVAVLPYEE--ASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR 213 (227)
Q Consensus 136 ~~IE~~~n~~I~~~~~v~~~~~~~~e--a~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~ 213 (227)
.||+.+|+.|..-+|+.+..++.++ ..+..+.-+|+ ...+.+|+|.|+|.|+++||||||+||++|+.++|++.+
T Consensus 156 -aieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D--~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgte 232 (415)
T KOG2105|consen 156 -AIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPD--DHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTE 232 (415)
T ss_pred -HHHHHHHHHHHhccchheeecccCCcchhhccCCCCcc--cccCceEEEeecCccCCccccccccchhhcceEEEeecc
Confidence 4999999999999999988776553 33332222222 124789999999999999999999999999999999998
Q ss_pred e-eCCeEEEEEEEc
Q 027168 214 T-KKGTTKVFYSVG 226 (227)
Q Consensus 214 ~-~~~~~Ri~~~~~ 226 (227)
+ +++++.+.|..|
T Consensus 233 kg~k~rtN~~f~~G 246 (415)
T KOG2105|consen 233 KGKKNRTNLIFLSG 246 (415)
T ss_pred ccccCccceEEEec
Confidence 7 556555555444
No 11
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.75 E-value=4.5e-18 Score=158.61 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccc
Q 027168 124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISE 203 (227)
Q Consensus 124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~e 203 (227)
..++++++++ ||++||++|++|+||++.+++++||.+.....+-.. ++++.||+|+||++|.++||||||.||++
T Consensus 495 ~~it~edL~~----IE~~vNeiI~~n~pV~~~~~s~eEA~~~~~~~lf~e-~y~~~VRVV~Igd~d~elCGGTHV~nTge 569 (594)
T PRK01584 495 EKMTDDEIKK----VEDIVNLQIKNDLSVKKEVMSLEEAREKGAMALFGE-KYEDIVKVYEIDGFSKEVCGGPHVENTGE 569 (594)
T ss_pred CCCCHHHHHH----HHHHHHHHHHhCCCeEEEEcCHHHHHhcchhhhccc-cCCCcEEEEEECCeeeeCCCCCCCCCccc
Confidence 3678888874 999999999999999999999999998643222111 34678999999999999999999999999
Q ss_pred cccEEEEEEEe-eCCeEEEEEEE
Q 027168 204 IISMKVSQIRT-KKGTTKVFYSV 225 (227)
Q Consensus 204 Ig~~~I~~~~~-~~~~~Ri~~~~ 225 (227)
||.|+|++.++ ++|..||...+
T Consensus 570 IG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 570 LGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CceEEEEecccccCCeEEEEEEe
Confidence 99999999976 66899999875
No 12
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=99.71 E-value=1.8e-17 Score=154.96 Aligned_cols=93 Identities=38% Similarity=0.589 Sum_probs=58.9
Q ss_pred ceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCE
Q 027168 8 TKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGI 79 (227)
Q Consensus 8 t~~ly~~~~y~~~~~a~Vl~i~~--------~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~ 79 (227)
|+.++|++. +++|+|+++.. ..++..+|+||+|+|||+|||||+|+|+|..++ ..|.|.+|++.+|.
T Consensus 452 teF~gYe~~---~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~ 526 (552)
T PF01411_consen 452 TEFVGYEYL---ECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDG--GEFEVTDVQKVGGV 526 (552)
T ss_dssp EETCCCC---------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTT--EEEEEEEEEEETTE
T ss_pred cccceeecc---cccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecc--eEEEEEEEEEECCE
Confidence 566888863 55566665521 112346899999999999999999999998763 67889999999999
Q ss_pred EEEEEEeecCCcccccccCCCCEEEEEEeHHH
Q 027168 80 VFHYGVVENSGGEFEMELEKGKEVRLWVDESR 111 (227)
Q Consensus 80 i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~r 111 (227)
++|++... .+.+.+|+.|.++|||+|
T Consensus 527 i~H~~~~~------~g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 527 ILHIGEVE------SGSLKVGDEVTAEVDWER 552 (552)
T ss_dssp EEEEESSG-------GG--TTSEEEEEE-HHH
T ss_pred EEEEEecc------CCCCCCCCEEEEEecCCC
Confidence 99986543 357899999999999997
No 13
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.62 E-value=4.4e-16 Score=97.50 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=35.9
Q ss_pred cEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCCeEEEE
Q 027168 180 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVF 222 (227)
Q Consensus 180 vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~~~Ri~ 222 (227)
||+|+||++|.+|||||||+||++|+.|+|++.++ +++..||+
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 69999999999999999999999999999997765 78999986
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.49 E-value=1e-13 Score=130.93 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCC----CCCCCCCCcEEEEECCCCCCCCCccccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLP----HYIPQGSTPRIVKLGDNPGCPCGGTHVS 199 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV~ 199 (227)
.+|++++.+ ||++||++|++|+||....+++++|.+++.. .+. ... +.+.||+|+||++ .++|+||||+
T Consensus 49 ~it~e~l~~----Ie~~m~~lI~~~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~-~~~~vri~~ig~~-~d~c~Gthv~ 122 (575)
T PRK12305 49 PFTPEDLKK----IEKKMKKIIKRGLPFEREEVSREEAREEFANEPYKLELIDDI-PEEGITIYDNGDF-EDLCRGPHVP 122 (575)
T ss_pred CCCHHHHHH----HHHHHHHHHhcCCCEEEEEecHHHHHHhCCcChhHHHhhhhc-CCCeEEEEEECCE-EEECCCCCCC
Confidence 578888774 9999999999999999999999999998752 111 111 2347999999997 5789999999
Q ss_pred cccccccEEEEEEE--------eeCCeEEEEEEEc
Q 027168 200 DISEIISMKVSQIR--------TKKGTTKVFYSVG 226 (227)
Q Consensus 200 nT~eIg~~~I~~~~--------~~~~~~Ri~~~~~ 226 (227)
|||+||.|+|++++ +.++..||+..+=
T Consensus 123 ~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~ 157 (575)
T PRK12305 123 NTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAW 157 (575)
T ss_pred CccCCceeEEEEEcceEECCCCCCcceEEEEEEec
Confidence 99999999999983 3468899998764
No 15
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.48 E-value=3.1e-14 Score=89.16 Aligned_cols=43 Identities=33% Similarity=0.565 Sum_probs=38.9
Q ss_pred cEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCCeEEEE
Q 027168 180 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVF 222 (227)
Q Consensus 180 vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~~~Ri~ 222 (227)
+|+|+||++|.+||+||||.||++||.|+|++.+. +++..||+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 68999999999999999999999999999999987 45667874
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.36 E-value=2.8e-12 Score=122.51 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=78.2
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCC-CC------CCCCCCCCcEEEEECCCCCCCCCccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC-LP------HYIPQGSTPRIVKLGDNPGCPCGGTH 197 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~------~~~~~~~~vRvv~ig~~d~~~CgGTH 197 (227)
.++++++. +||++||++|++|+||....+++++|.+++... .+ ...+.++.+|++++|++ .++|+|||
T Consensus 111 ~lt~e~l~----~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~-~d~c~G~h 185 (638)
T PRK00413 111 PFTPEDLE----AIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEF-VDLCRGPH 185 (638)
T ss_pred CCCHHHHH----HHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCE-EEECCCCC
Confidence 46777776 599999999999999999999999999987521 11 11233447999999997 68999999
Q ss_pred cccccccccEEEEEEE--------eeCCeEEEEEEEc
Q 027168 198 VSDISEIISMKVSQIR--------TKKGTTKVFYSVG 226 (227)
Q Consensus 198 V~nT~eIg~~~I~~~~--------~~~~~~Ri~~~~~ 226 (227)
|+|||+|+.|+|.+.+ +.++..||+=.+-
T Consensus 186 v~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~ 222 (638)
T PRK00413 186 VPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAF 222 (638)
T ss_pred CCcccCCceeEEEEEcceEEcCCCcchheEEEEeeec
Confidence 9999999999999983 3567889986553
No 17
>PLN02837 threonine-tRNA ligase
Probab=99.33 E-value=3.6e-12 Score=121.16 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCCCC-CC--CCCCcEEEEECCCCCCCCCcccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLPHY-IP--QGSTPRIVKLGDNPGCPCGGTHV 198 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~~~-~~--~~~~vRvv~ig~~d~~~CgGTHV 198 (227)
.+|++++. +||++||++|++|+||+..+++++||.+++.. .+... ++ ..+.||+|+|||...++|+||||
T Consensus 85 ~lt~edl~----~IEk~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv 160 (614)
T PLN02837 85 PLTDKDLK----RIKKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHV 160 (614)
T ss_pred CCCHHHHH----HHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCc
Confidence 45667766 59999999999999999999999999987531 22111 11 24579999999833788999999
Q ss_pred cccccc--ccEEEEEEEe
Q 027168 199 SDISEI--ISMKVSQIRT 214 (227)
Q Consensus 199 ~nT~eI--g~~~I~~~~~ 214 (227)
+|||+| +.|+|++++-
T Consensus 161 ~sTg~I~~~~~kl~~~~g 178 (614)
T PLN02837 161 ERTGKINKKAVELESVAG 178 (614)
T ss_pred ccccccccceEEEEEeeh
Confidence 999999 8999998863
No 18
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.29 E-value=1.2e-11 Score=118.30 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCC----CCCCCCCCcEEEEECCCCCCCCCccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLP----HYIPQGSTPRIVKLGDNPGCPCGGTH 197 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~----~~~~~~~~vRvv~ig~~d~~~CgGTH 197 (227)
.++++++. +||++||++|++|+||....++++||.+++.. .+. ...+....||++++|++ .+.|+|||
T Consensus 115 ~it~edl~----~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~-~D~c~G~h 189 (639)
T PRK12444 115 SVNVEDLR----KIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEF-VDLCRGPH 189 (639)
T ss_pred CCCHHHHH----HHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCE-EEEcCCcC
Confidence 46677776 59999999999999999999999999998752 111 11233356999999996 67899999
Q ss_pred cccccccccEEEEEEEee--------CCeEEEEEEE
Q 027168 198 VSDISEIISMKVSQIRTK--------KGTTKVFYSV 225 (227)
Q Consensus 198 V~nT~eIg~~~I~~~~~~--------~~~~Ri~~~~ 225 (227)
|+|||+|+.|+|++.+.. ++..||+=.+
T Consensus 190 v~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a 225 (639)
T PRK12444 190 LPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA 225 (639)
T ss_pred CCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe
Confidence 999999999999988643 4678887554
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.14 E-value=1.8e-10 Score=110.86 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCC----CCCCCCCCcEEEEECCCCCCCCCccccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLP----HYIPQGSTPRIVKLGDNPGCPCGGTHVS 199 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV~ 199 (227)
.++++++. .||++|+++|++++||+...+++++|.+++.. .+. ...+..+.++++++|++ .+.|.||||+
T Consensus 164 ~~t~edl~----~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~-~D~c~Gphv~ 238 (686)
T PLN02908 164 TLNEEDFK----PIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPL-VDLCRGPHIP 238 (686)
T ss_pred CCCHHHHH----HHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCE-EEecCCCCCC
Confidence 35666665 59999999999999999999999999998752 221 12233457999999997 7889999999
Q ss_pred cccccccEEEEEEEe
Q 027168 200 DISEIISMKVSQIRT 214 (227)
Q Consensus 200 nT~eIg~~~I~~~~~ 214 (227)
|||+|+.|+|++.+.
T Consensus 239 sTg~ik~f~l~~~~~ 253 (686)
T PLN02908 239 NTSFVKAFACLKASS 253 (686)
T ss_pred CCCccceeEEEEecc
Confidence 999999999999873
No 20
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=98.99 E-value=1.2e-09 Score=103.20 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC--CCCC----CCCCCCCCcEEEEECCCCCCCCCcccc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG--GCLP----HYIPQGSTPRIVKLGDNPGCPCGGTHV 198 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~--~~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV 198 (227)
.++++++.+ ||++||++|.+++||....+++++|.+++. ..++ +..++.+.|+++.+|++..+.|.||||
T Consensus 40 ~~t~eel~~----Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v 115 (563)
T TIGR00418 40 SFTQEDLEK----IEKDMKEIAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHL 115 (563)
T ss_pred CCCHHHHHH----HHHHHHHHHhcCCCEEEEEECHHHHHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcC
Confidence 578888874 999999999999999999999999998875 1221 111245679999999944899999999
Q ss_pred ccccccccEEEEEEEee--------CCeEEEEEEE
Q 027168 199 SDISEIISMKVSQIRTK--------KGTTKVFYSV 225 (227)
Q Consensus 199 ~nT~eIg~~~I~~~~~~--------~~~~Ri~~~~ 225 (227)
+|||.|+.|+|.+.... +...||+-.+
T Consensus 116 ~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~ 150 (563)
T TIGR00418 116 PNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTA 150 (563)
T ss_pred CCCCCCceeEEEEeccceEeEcCCCCceEeeeecc
Confidence 99999999999976532 3466776543
No 21
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.7e-08 Score=93.52 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCC-C-CCCCCcEEEEECCCCCCCCCccccccc
Q 027168 124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHY-I-PQGSTPRIVKLGDNPGCPCGGTHVSDI 201 (227)
Q Consensus 124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~-~-~~~~~vRvv~ig~~d~~~CgGTHV~nT 201 (227)
.+++++++.+ ||++|+++++++++|....+++++|++.++ .|..+ + .....+.+++.|+| .++|.|+||+||
T Consensus 66 ~~~~~~dl~~----ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~-~yK~~~i~~~~~~~s~y~~~~~-~dlc~gph~~~t 139 (589)
T COG0441 66 EPITPEDLLK----IEKEMKEIAKENLPIEREVVSREEARAPFG-PYKAELIDCKGHPLSEYSQGEF-VDLCRGPHVPST 139 (589)
T ss_pred CCCCHHHHHH----HHHHHHHHHHhcCceEEEEecHHHHHHHhh-hhHHHHHhcCCCCceeEecCcc-ccccCCCCCCcc
Confidence 4478888885 999999999999999999999999999886 44322 1 12367999999998 899999999999
Q ss_pred cccccEEEEEEE
Q 027168 202 SEIISMKVSQIR 213 (227)
Q Consensus 202 ~eIg~~~I~~~~ 213 (227)
+.| .|++++++
T Consensus 140 ~~i-~fkl~~~~ 150 (589)
T COG0441 140 GKI-AFKLLKLA 150 (589)
T ss_pred ceE-EEEEEEec
Confidence 999 99999886
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.21 E-value=0.00042 Score=65.35 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=45.7
Q ss_pred EcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCCCCCCCCc-cccccccccccEEEEEEEee-----CCeEEEEEEE
Q 027168 156 VLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDNPGCPCGG-THVSDISEIISMKVSQIRTK-----KGTTKVFYSV 225 (227)
Q Consensus 156 ~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~d~~~CgG-THV~nT~eIg~~~I~~~~~~-----~~~~Ri~~~~ 225 (227)
.++++||.+++.- .+....-.++. ++.+|.+ +++|.| |||+||+.|+.|++++++.. ....||+=++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~ 118 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIENNQ--IVYKGNK-VSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVA 118 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeecCc--EEEccCc-eeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEee
Confidence 4577888877641 22211111333 3358887 899999 99999999999999999853 2356776443
No 23
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.58 E-value=6.7 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=22.7
Q ss_pred EeeeEEEEEEecCCCeEEEEEccccccC
Q 027168 20 QSTSKLISYFKGDDGRRALILESTIFHP 47 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~Fyp 47 (227)
...++|++|.+.+++..||+||.|.+|-
T Consensus 21 gTvgrV~dIkkdEdG~~WV~LdstdLwY 48 (97)
T COG4014 21 GTVGRVVDIKKDEDGDIWVVLDSTDLWY 48 (97)
T ss_pred CceeeEEEEEeecCCceEEEEecCCcee
Confidence 5568999998767778999999987654
No 24
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=32.52 E-value=75 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred EeeeEEEEEEecCCCeEEEEEccccccC
Q 027168 20 QSTSKLISYFKGDDGRRALILESTIFHP 47 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~Fyp 47 (227)
-...+|+++.. +++..|+.||.|-.|-
T Consensus 15 GT~G~V~diK~-ed~~~wv~LD~t~L~Y 41 (91)
T PF09871_consen 15 GTVGKVVDIKE-EDGETWVLLDSTDLYY 41 (91)
T ss_pred CeEEEEEEEEE-eCCCeEEEEccCCcee
Confidence 45678888864 5667899999887764
No 25
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=30.80 E-value=89 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCceEEEE
Q 027168 135 TKELELEANALISRGGKVMVAV 156 (227)
Q Consensus 135 ~~~IE~~~n~~I~~~~~v~~~~ 156 (227)
+..+|+++|+.|..|-++-.+.
T Consensus 20 l~~LEkkIneqIe~NkailL~V 41 (68)
T PF10750_consen 20 LQTLEKKINEQIEHNKAILLEV 41 (68)
T ss_pred HHHHHHHHHHHHhcCceEEEEE
Confidence 4569999999999998875443
No 26
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=27.28 E-value=3.6e+02 Score=22.34 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=50.4
Q ss_pred EeeeEEEEEEecCCCeEEEEEcccc-ccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEE--eecCCcccccc
Q 027168 20 QSTSKLISYFKGDDGRRALILESTI-FHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV--VENSGGEFEME 96 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~-Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~--~~~~~~~~~~~ 96 (227)
...++|+++.+. ++.+.+.+-..+ -+ -=...-.|+|..+| +...|.+|. .+..-+|... .+.+- -+.
T Consensus 101 Dg~g~I~~i~~~-~na~~~~~~~~~~~l---~kyiv~KGsIavDG--iSLTV~~v~-~~~F~V~lIPhT~~~T~---l~~ 170 (204)
T COG0307 101 DGTGEIVKIEKD-GNAVRFWFKAPPEEL---AKYIVEKGSIAVDG--ISLTVNEVE-DDTFSVSLIPHTLERTT---LGE 170 (204)
T ss_pred eeEEEEEEEEEc-CCeEEEEEEcCCHHH---HhhhcccceEEEee--EEEEEEEEc-CCEEEEEEEecchhhcc---hhh
Confidence 567889998863 333444432220 00 01234478998874 555688887 4445555421 11111 245
Q ss_pred cCCCCEEEEEEeHHHHhh
Q 027168 97 LEKGKEVRLWVDESRRKL 114 (227)
Q Consensus 97 l~~G~~v~~~iD~~rR~~ 114 (227)
.++|+.|.+++|.--||.
T Consensus 171 ~~~Gd~VNiE~D~l~kyv 188 (204)
T COG0307 171 KKVGDRVNIEIDVLAKYV 188 (204)
T ss_pred ccCCCEEEEeEcHHHHHH
Confidence 689999999999988865
No 27
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=22.49 E-value=2.6e+02 Score=18.93 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=5.3
Q ss_pred CCCCEEEEEE
Q 027168 98 EKGKEVRLWV 107 (227)
Q Consensus 98 ~~G~~v~~~i 107 (227)
.+|+.|.+.+
T Consensus 57 ~aGd~v~l~l 66 (82)
T cd04089 57 RPGENVRLRL 66 (82)
T ss_pred CCCCEEEEEe
Confidence 4455555555
No 28
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.57 E-value=4.6e+02 Score=25.24 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=23.4
Q ss_pred CeEEEEEccccccCCC--CCCCCCeEEEEe
Q 027168 34 GRRALILESTIFHPQG--GGQPSDTGFIIV 61 (227)
Q Consensus 34 ~~~~vvld~T~Fyp~g--GGQ~~D~G~i~~ 61 (227)
....|+-++..|-|.| ||.|+-.|...+
T Consensus 456 ~~~si~s~r~~~~P~Gl~GG~~g~~g~~~v 485 (563)
T COG0146 456 ATLTILSERRRFPPWGLNGGKPGEPGENVV 485 (563)
T ss_pred ceEEEEeCceecCCccccCCccCCCcceEE
Confidence 4577888999999999 999999987754
Done!