Query 027168
Match_columns 227
No_of_seqs 169 out of 1328
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kew_A DHHA1 domain protein; s 100.0 4.1E-55 1.4E-59 368.7 20.8 199 7-227 1-229 (241)
2 2e1b_A PH0108, 216AA long hypo 100.0 3.2E-49 1.1E-53 328.0 13.5 181 7-225 4-215 (216)
3 2zze_A Alanyl-tRNA synthetase; 100.0 2.4E-47 8.4E-52 360.6 22.3 205 5-227 513-752 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 2.2E-45 7.4E-50 347.2 22.6 202 5-227 501-738 (739)
5 1v4p_A Alanyl-tRNA synthetase; 99.9 7E-22 2.4E-26 155.7 10.8 101 123-227 47-152 (157)
6 1tke_A Threonyl-tRNA synthetas 99.7 2.9E-17 9.8E-22 136.5 9.7 97 124-225 110-222 (224)
7 1nyr_A Threonyl-tRNA synthetas 99.5 9.3E-15 3.2E-19 138.3 8.9 98 124-226 112-222 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 99.5 1.2E-14 4.2E-19 137.4 8.2 85 125-214 111-203 (642)
9 1kzl_A Riboflavin synthase; bi 32.3 1.9E+02 0.0063 22.9 8.6 87 20-114 104-191 (208)
10 3a35_A Lumazine protein, LUMP; 28.5 2.1E+02 0.007 22.2 8.5 85 20-113 103-189 (190)
11 1i8d_A Riboflavin synthase; ri 20.0 3.1E+02 0.01 21.7 6.8 82 20-114 104-191 (213)
No 1
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=4.1e-55 Score=368.71 Aligned_cols=199 Identities=26% Similarity=0.313 Sum_probs=171.4
Q ss_pred cc-eeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEE
Q 027168 7 PT-KLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV 85 (227)
Q Consensus 7 ~t-~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~ 85 (227)
|| ++|||+|||+++|+|+|++|.+ +++.++|+||+|+|||+|||||+|+|+|. + +.|.+|++.+|.++|++
T Consensus 1 mT~~~ly~~d~y~~~~~a~V~~~~~-~~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~--~~V~~v~~~~g~i~H~~- 72 (241)
T 3kew_A 1 MSLTKLYYEDQYIKEFKGEIIEVKE-IDGKFHVLLDQTAFFPGGGGQMGDLGLID----G--IKVLDVYEEEGKVYHVL- 72 (241)
T ss_dssp --CEEGGGTCTTCCEEEECEEEEEE-ETTEEEEEESEECCCCCBTTBCCCCEEET----T--EEEEEEEEETTEEEEEE-
T ss_pred CcchhhhhhCcccceeEEEEEEEEe-cCCeEEEEEeCCcccCCCCCCCCCEEEEe----e--EEEEEEEEeCCEEEEEE-
Confidence 57 9999999999999999999986 34568999999999999999999999993 3 55999999999999984
Q ss_pred eecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------------------ccccCCCChhHhhhhHH
Q 027168 86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------------------VEYKGSVPQNELQSKTK 136 (227)
Q Consensus 86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------------------~~~~g~l~~~~l~~~~~ 136 (227)
. +++.+|++|.+.|||+||+++|+.| .++...+++++++
T Consensus 73 -~-------~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~~~G~~v~~~~~r~Df~~~lt~e~l~---- 140 (241)
T 3kew_A 73 -E-------KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTVDIVGFLDEKTIR---- 140 (241)
T ss_dssp -S-------SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSSCEEEEEESCCCHHHHH----
T ss_pred -C-------CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCCeEeccccCCeEEEEECCCCCHHHHH----
Confidence 2 3577999999999999999999932 1233456777776
Q ss_pred HHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEeeC
Q 027168 137 ELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKK 216 (227)
Q Consensus 137 ~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~~~ 216 (227)
+||++||++|++|+||++.+++++||.+++...++. .+++.||+|+||++|.+|||||||+|||+||.|+|++.++.+
T Consensus 141 ~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~~e--~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~~~ 218 (241)
T 3kew_A 141 EAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP--KTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHK 218 (241)
T ss_dssp HHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSCCC--CCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhcCC--ccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEEeccC
Confidence 599999999999999999999999999875333321 246789999999999999999999999999999999999888
Q ss_pred CeEEEEEEEcC
Q 027168 217 GTTKVFYSVGS 227 (227)
Q Consensus 217 ~~~Ri~~~~~~ 227 (227)
+.+||+|.+|+
T Consensus 219 ~~~RI~~~~G~ 229 (241)
T 3kew_A 219 NATRIEYVAGN 229 (241)
T ss_dssp TEEEEEEEEGG
T ss_pred CcEEEEEEECH
Confidence 88999999984
No 2
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.2e-49 Score=327.95 Aligned_cols=181 Identities=29% Similarity=0.400 Sum_probs=152.1
Q ss_pred cceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe-CCEEEEEEE
Q 027168 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-DGIVFHYGV 85 (227)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~-~g~i~H~~~ 85 (227)
||++|||+|||+++++|+|+++.. .+|+||+|+|||+|||||+|+|+|. + |.|.+|++. +|.++|++.
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~~-----~~vvld~T~Fype~GGQ~~D~G~i~----~--~~V~~v~~~~~~~i~H~~~ 72 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIRD-----NAILLDQTIFYPTGGGQPHDRGTIN----G--VEVLDVYKDEEGNVWHVVK 72 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCCS-----SCCCBSCCCSCCCCTTCCCCCEEET----T--EEEEEEECCTTCCCEEEES
T ss_pred hhHHHHhhCcccceeeEEEEEEeC-----CEEEEeCCCccCCCCCCCCCEEEEc----c--EEEEEEEECcCCEEEEEEc
Confidence 699999999999999999999942 2799999999999999999999994 2 669999987 899999853
Q ss_pred eecCCcccccccCCCCEEEEEEeHHHHhhhhcccc------------------cccCC-CChh----------HhhhhHH
Q 027168 86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV------------------EYKGS-VPQN----------ELQSKTK 136 (227)
Q Consensus 86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~------------------~~~g~-l~~~----------~l~~~~~ 136 (227)
. .+.+.+|++|.+.|||+||+.+|+.|. .+.|+ ++++ .+...+.
T Consensus 73 ~-------~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~el~ 145 (216)
T 2e1b_A 73 E-------PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKE 145 (216)
T ss_dssp C-------GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGGHH
T ss_pred c-------CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHHHH
Confidence 2 246889999999999999999999331 12222 1111 1222366
Q ss_pred HHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEe-e
Q 027168 137 ELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-K 215 (227)
Q Consensus 137 ~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~ 215 (227)
+||++||++|++|+||...++++ +|+|+||++|.+|||||||+|||+||.|+|++.++ +
T Consensus 146 ~IE~~vn~~I~~~~pv~~~~~~~--------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~~~ 205 (216)
T 2e1b_A 146 QIISLFNKYVDEGGEVKIWWEGD--------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIG 205 (216)
T ss_dssp HHHHHHHHHHHHCCBEEEEESSS--------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC--------------------EEEEEECCEEEECCCCCCcccHhhCceEEEEEEeEEc
Confidence 79999999999999999988652 89999999999999999999999999999999986 5
Q ss_pred CCeEEEEEEE
Q 027168 216 KGTTKVFYSV 225 (227)
Q Consensus 216 ~~~~Ri~~~~ 225 (227)
+|..||+|.+
T Consensus 206 ~g~rRi~~~l 215 (216)
T 2e1b_A 206 RGKQRLEMWL 215 (216)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 6888999986
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=2.4e-47 Score=360.60 Aligned_cols=205 Identities=24% Similarity=0.366 Sum_probs=175.8
Q ss_pred CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEE
Q 027168 5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG 84 (227)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~ 84 (227)
.++|+++||+++|+++++|+|+++.. .+|+||+|+|||+|||||+|+|+|..++ ..|.|.+|++.+|.++|++
T Consensus 513 ~~~T~~l~Y~~~yl~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~g--~~~~V~dv~k~~g~ivH~~ 585 (752)
T 2zze_A 513 LPDTRRLYYEDPFMXEFDAXVLRVIX-----DWVILDATAFYPEGGGQPYDTGVLIVNG--REVXVTNVQXVGXVIIHXV 585 (752)
T ss_dssp SCCCEEHHHHCTTCCEEEEEEEEEET-----TEEEESEECSCCSBTTBCCCCEEEEETT--EEEEEEEEEEETTEEEEEE
T ss_pred CCCceeecccCCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCC--EEEEEEeeeecCcEEEEec
Confidence 47899999999999999999999984 4899999999999999999999998753 4677999999999999985
Q ss_pred EeecCCcccccccCCCCEEEEEEeHHHHhhhhcccc-----------------ccc----------------CCCChhHh
Q 027168 85 VVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV-----------------EYK----------------GSVPQNEL 131 (227)
Q Consensus 85 ~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~-----------------~~~----------------g~l~~~~l 131 (227)
.. .+.+.+|++|.+.|||+||+.+|+.|. .+. ..++++++
T Consensus 586 ~~-------~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL 658 (752)
T 2zze_A 586 ED-------PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEEL 658 (752)
T ss_dssp SC-------GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHH
T ss_pred cc-------cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHH
Confidence 32 246789999999999999999999331 122 23566776
Q ss_pred hhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEE
Q 027168 132 QSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVS 210 (227)
Q Consensus 132 ~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~ 210 (227)
. +||++||++|++|+||++.+++++||.++++..+ ....++++.||+|+||++|.++||||||+|||+||.|+|+
T Consensus 659 ~----~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIl 734 (752)
T 2zze_A 659 X----EIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXIL 734 (752)
T ss_dssp H----HHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEE
T ss_pred H----HHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEE
Confidence 6 5999999999999999999999999998865322 2223556789999999999999999999999999999999
Q ss_pred EEEe-eCCeEEEEEEEcC
Q 027168 211 QIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 211 ~~~~-~~~~~Ri~~~~~~ 227 (227)
+.++ ++|.+||+|.+|.
T Consensus 735 s~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 735 RTERIQDGVERIIFACGE 752 (752)
T ss_dssp EEEEEETTEEEEEEEECC
T ss_pred EEEEEcCCEEEEEEEeCC
Confidence 9986 6799999999985
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.2e-45 Score=347.21 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=172.1
Q ss_pred CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEE
Q 027168 5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG 84 (227)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~ 84 (227)
.++|+++||+++|+++++|+|+++.. .+|+||+|+|||+|||||+|+|+|..++ ..|.|.+|++.+|.++|++
T Consensus 501 ~~~T~~l~Y~~~y~~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~g--~~~~V~dv~k~~g~ivH~~ 573 (739)
T 2ztg_A 501 YPATEKLYYDDPTLLEFEAEVIGVEG-----DFVILNRSAFYPESGGQDNDVGYLIANG--GKFEVVDVLEADGVVLHVV 573 (739)
T ss_dssp CCCCEECTTTCTTCCEEEEEEEEEET-----TEEEESEECCCCSBTTBCCCCEEEEETT--EEEEECEEEEETTEEEEEC
T ss_pred CCCceeecccCCcccEEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEECC--EEEEEEEEEEECCEEEEEE
Confidence 57899999999999999999999984 4799999999999999999999998753 4677999999999999974
Q ss_pred EeecCCccccccc-CCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168 85 VVENSGGEFEMEL-EKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE 130 (227)
Q Consensus 85 ~~~~~~~~~~~~l-~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~ 130 (227)
. +.+ .+|++|.+.|||+||+.+|+.| +.+.| .+++++
T Consensus 574 ~---------~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~ed 644 (739)
T 2ztg_A 574 K---------GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEE 644 (739)
T ss_dssp C---------SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHH
T ss_pred c---------ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHH
Confidence 2 233 6899999999999999999933 12222 345666
Q ss_pred hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168 131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209 (227)
Q Consensus 131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I 209 (227)
+. +||++||++|++|+||++.+++++||.++++..+ ....++++.||+|+||+ +.++||||||+|||+||.|+|
T Consensus 645 L~----~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~fkI 719 (739)
T 2ztg_A 645 IK----EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGMLKI 719 (739)
T ss_dssp HH----HHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCEEE
T ss_pred HH----HHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcEEE
Confidence 65 5999999999999999999999999998875332 22245567899999999 799999999999999999999
Q ss_pred EEEEe-eCCeEEEEEEEcC
Q 027168 210 SQIRT-KKGTTKVFYSVGS 227 (227)
Q Consensus 210 ~~~~~-~~~~~Ri~~~~~~ 227 (227)
++.++ ++|..||+|.+|+
T Consensus 720 ls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 720 LKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp EEEEEEETTEEEEEEEESC
T ss_pred EEEeEEcCCEEEEEEEecC
Confidence 99986 6799999999985
No 5
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.87 E-value=7e-22 Score=155.74 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=85.6
Q ss_pred cCCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCC-CCCC-CCCC-CCcEEEEECCCCCCCCCccccc
Q 027168 123 KGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC-LPHY-IPQG-STPRIVKLGDNPGCPCGGTHVS 199 (227)
Q Consensus 123 ~g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~~~-~~~~-~~vRvv~ig~~d~~~CgGTHV~ 199 (227)
...++++++.+ ||++||++|++|+||...+++++||.++++.. +... ++.. +.||+|+||++|.++||||||+
T Consensus 47 ~~~~t~e~l~~----IE~~~n~~I~~~~pi~~~~~~~~eA~~~f~~~~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~ 122 (157)
T 1v4p_A 47 DRKPSDEEIRE----IERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTK 122 (157)
T ss_dssp SSCCCHHHHHH----HHHHHHHHHHHTCBCEEEEEEHHHHHHHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCCCS
T ss_pred CCCCCHHHHHH----HHHHHHHHHHcCCCEEEEEeCHHHHHHhhCccccccccCCCCCCeEEEEEECCeeEeCCCCCccC
Confidence 45789999885 99999999999999999999999999987642 2211 2222 5799999999999999999999
Q ss_pred cccccccEEEEEEEe--eCCeEEEEEEEcC
Q 027168 200 DISEIISMKVSQIRT--KKGTTKVFYSVGS 227 (227)
Q Consensus 200 nT~eIg~~~I~~~~~--~~~~~Ri~~~~~~ 227 (227)
|||+||.|+|++.+. +++.+||+|.++|
T Consensus 123 ~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 123 TTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp BGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred ChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 999999999999975 5688999999986
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.71 E-value=2.9e-17 Score=136.50 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCC----CC-CCCCCCcEEEEECCCCCCCCCc
Q 027168 124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLP----HY-IPQGSTPRIVKLGDNPGCPCGG 195 (227)
Q Consensus 124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~----~~-~~~~~~vRvv~ig~~d~~~CgG 195 (227)
..++++++. +||++||++|++|+||+..+++++||.+++.. .++ .. .++++.||+|++|++ .++|+|
T Consensus 110 ~~~t~edl~----~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~-~dlC~G 184 (224)
T 1tke_A 110 RTLTQEDVE----ALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRG 184 (224)
T ss_dssp SCCCHHHHH----HHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEEESC
T ss_pred CCCCHHHHH----HHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCE-EEECCC
Confidence 356788877 49999999999999999999999999987631 111 11 335678999999998 799999
Q ss_pred cccccccccccEEEEEEEe--------eCCeEEEEEEE
Q 027168 196 THVSDISEIISMKVSQIRT--------KKGTTKVFYSV 225 (227)
Q Consensus 196 THV~nT~eIg~~~I~~~~~--------~~~~~Ri~~~~ 225 (227)
|||+|||+||.|+|++.+. .+...||+-++
T Consensus 185 ~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 185 PHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp CCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred cCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 9999999999999999864 12368998765
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.54 E-value=9.3e-15 Score=138.31 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=79.3
Q ss_pred CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC-CCCC----CCCCCCCCcEEEEECCCCCCCCCcccc
Q 027168 124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG-GCLP----HYIPQGSTPRIVKLGDNPGCPCGGTHV 198 (227)
Q Consensus 124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~-~~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV 198 (227)
..+|++++. +||++||++|++|+||...+++++||.++++ ..+. ..++.++.||+|++|++ .++|+||||
T Consensus 112 ~~~t~edl~----~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~-~dlC~G~Hv 186 (645)
T 1nyr_A 112 QNISSDDFE----QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHV 186 (645)
T ss_dssp SCCCSTTHH----HHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCC
T ss_pred CCCCHHHHH----HHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCE-EEecCCccc
Confidence 346777777 5999999999999999999999999999886 2221 22344468999999998 789999999
Q ss_pred ccccccccEEEEEEEe--------eCCeEEEEEEEc
Q 027168 199 SDISEIISMKVSQIRT--------KKGTTKVFYSVG 226 (227)
Q Consensus 199 ~nT~eIg~~~I~~~~~--------~~~~~Ri~~~~~ 226 (227)
+|||+||.|+|++.+. .+...||+-.+.
T Consensus 187 ~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~ 222 (645)
T 1nyr_A 187 PSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAF 222 (645)
T ss_dssp SCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEE
T ss_pred CCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhc
Confidence 9999999999999962 223678876653
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.52 E-value=1.2e-14 Score=137.38 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC---CCCC-----CCCCCCCCcEEEEECCCCCCCCCcc
Q 027168 125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG---GCLP-----HYIPQGSTPRIVKLGDNPGCPCGGT 196 (227)
Q Consensus 125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~---~~~~-----~~~~~~~~vRvv~ig~~d~~~CgGT 196 (227)
.+|++++.+ ||++||++|++|+||...+++++||.+++. .++. ..++.++.||+|++|+| .++|+||
T Consensus 111 ~~t~edl~~----IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~-~dlC~Gp 185 (642)
T 1qf6_A 111 TLTQEDVEA----LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGP 185 (642)
T ss_dssp CCCHHHHHH----HHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTE-EECCSSC
T ss_pred CCCHHHHHH----HHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCE-EEecCCC
Confidence 467888774 999999999999999999999999998753 2222 22344468999999998 7999999
Q ss_pred ccccccccccEEEEEEEe
Q 027168 197 HVSDISEIISMKVSQIRT 214 (227)
Q Consensus 197 HV~nT~eIg~~~I~~~~~ 214 (227)
||+|||+||.|+|++++.
T Consensus 186 Hv~~Tg~I~~fkl~~~~~ 203 (642)
T 1qf6_A 186 HVPNMRFCHHFKLMKTAG 203 (642)
T ss_dssp CCSBGGGCCSEEEEEEEE
T ss_pred ccCCCCcceeEEEeeecc
Confidence 999999999999999976
No 9
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=32.33 E-value=1.9e+02 Score=22.88 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=52.9
Q ss_pred EeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEeecCC-cccccccC
Q 027168 20 QSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSG-GEFEMELE 98 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~-~~~~~~l~ 98 (227)
...++|+++.+. ++...+.+.--+ |+-.-.....|+|..+| ....|.+|.. +..-++. ++.+- .-..+.++
T Consensus 104 Dg~g~i~~~~~~-~~~~~~~~~~~p--~~l~~yiv~KGsIaidG--iSLTV~~v~~-~~F~v~l--IP~T~~~T~l~~~~ 175 (208)
T 1kzl_A 104 DTVAEIVEKKQD-GEAIDFTFRPRD--PFVLKYIVYKGYIALDG--TSLTITHVDD-STFSIMM--ISYTQSKVIMAKKN 175 (208)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEEESS--GGGGGGCCTTCEEEETT--EEEEEEEECS-SCEEEEE--CHHHHTTSGGGGCC
T ss_pred eeeeEEEEEEec-CCcEEEEEEeCC--HHHHhhhhhCCEEEEee--EEeEEEeEcC-CEEEEEE--ehhhHhhcccccCC
Confidence 667899999863 333444332200 11223577899999984 5666888863 3455554 33100 00124678
Q ss_pred CCCEEEEEEeHHHHhh
Q 027168 99 KGKEVRLWVDESRRKL 114 (227)
Q Consensus 99 ~G~~v~~~iD~~rR~~ 114 (227)
+|+.|.+++|.--||-
T Consensus 176 ~Gd~VNlE~D~~~kyv 191 (208)
T 1kzl_A 176 VGDLVNVEVDQIGKYT 191 (208)
T ss_dssp TTCEEEEEECTHHHHH
T ss_pred CCCEEEEeEehHHHHH
Confidence 9999999999877764
No 10
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=28.55 E-value=2.1e+02 Score=22.22 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=48.5
Q ss_pred EeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEeecCCc-ccccccC
Q 027168 20 QSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGG-EFEMELE 98 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~-~~~~~l~ 98 (227)
...++|+++.+. ++...+.+.-. |+=.-.....|+|..+| ....|.++.. +..-++. ++.+-. -..+.++
T Consensus 103 dg~g~i~~~~~~-~~~~~~~~~~p---~~~~~yi~~KGsIavdG--vSLTV~~v~~-~~f~v~l--IP~T~~~T~l~~~~ 173 (190)
T 3a35_A 103 KGVATVDNITEE-EDRLKVYIKIP---KDLIENILSEDHIGING--VSHSIEEISD-DIIFINY--PKNLSITTNLGTLE 173 (190)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEECC---TTSCSCCCTTSEEEETT--EEEECCEEET-TEEEEEE--ETTHHHHSGGGGCC
T ss_pred eEEEEEEEEEEc-CCeEEEEEEeC---HHHHhcCCcCCEEEECC--EEEEEEEecC-CEEEEEE--eHHHHhhcccccCc
Confidence 577899999863 44444444321 22234677889999984 5566888853 2344443 331000 0124678
Q ss_pred CCCEEEEE-EeHHHHh
Q 027168 99 KGKEVRLW-VDESRRK 113 (227)
Q Consensus 99 ~G~~v~~~-iD~~rR~ 113 (227)
+|+.|.++ +|.--||
T Consensus 174 ~Gd~VNlE~~D~~~ky 189 (190)
T 3a35_A 174 KGSDVNVETLNVSNEW 189 (190)
T ss_dssp TTCEEEEEECC-----
T ss_pred CCCEEEEecccccccc
Confidence 99999999 9987666
No 11
>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*
Probab=20.05 E-value=3.1e+02 Score=21.68 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=50.5
Q ss_pred EeeeEEEEEEecCCCeEEEEEccccccCCC--CCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEeec----CCccc
Q 027168 20 QSTSKLISYFKGDDGRRALILESTIFHPQG--GGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVEN----SGGEF 93 (227)
Q Consensus 20 ~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~g--GGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~----~~~~~ 93 (227)
...++|+++.+. ++...+.+.- |.. .-.....|+|..+| ....|.+|.. +..-++. ++. +-
T Consensus 104 Dg~g~i~~~~~~-~~~~~~~~~~----p~~~l~~yiv~KGsIavdG--vSLTV~~v~~-~~F~v~l--IP~T~~~T~--- 170 (213)
T 1i8d_A 104 MTTAEVAKILTS-ENNRQIWFKV----QDSQLMKYILYKGFIGIDG--ISLTVGEVTP-TRFCVHL--IPETLERTT--- 170 (213)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEEE----SCGGGGGGCCTTCEEEETT--EEEECCSBCS-SEEEEEE--CHHHHHHSS---
T ss_pred eEEEEEEEEEEc-CCeEEEEEEe----CHHHhHhhceeCCeEEEcc--EEEEEEEecC-CEEEEEE--chHHHhhCc---
Confidence 677899999863 3333333321 221 22467789999984 5555766642 2233443 331 11
Q ss_pred ccccCCCCEEEEEEeHHHHhh
Q 027168 94 EMELEKGKEVRLWVDESRRKL 114 (227)
Q Consensus 94 ~~~l~~G~~v~~~iD~~rR~~ 114 (227)
.+.+++|+.|.+++|.--||-
T Consensus 171 l~~~~~Gd~VNlE~D~~~kyv 191 (213)
T 1i8d_A 171 LGKKKLGARVNIEIDPQTQAV 191 (213)
T ss_dssp GGGCCTTCEEEEEECHHHHHH
T ss_pred cccCCCCCEEEEeEchHHHHH
Confidence 246789999999999987774
Done!