Query 027169
Match_columns 227
No_of_seqs 118 out of 1408
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.4 6.4E-13 2.2E-17 99.0 7.1 72 130-201 34-106 (137)
2 3b5d_A Multidrug transporter E 99.1 2.2E-09 7.4E-14 77.0 12.4 71 130-200 34-105 (110)
3 3b5d_A Multidrug transporter E 92.2 0.039 1.3E-06 38.8 0.9 28 2-29 75-102 (110)
4 2i68_A Protein EMRE; transmemb 89.5 0.075 2.6E-06 38.9 0.3 29 2-30 75-103 (137)
5 4aps_A DI-OR tripeptide H+ sym 56.2 88 0.003 26.3 10.2 15 184-198 457-471 (491)
6 3l1l_A Arginine/agmatine antip 50.2 64 0.0022 27.1 8.2 44 159-202 387-430 (445)
7 2zxe_G FXYD10, phospholemman-l 47.8 11 0.00038 24.0 2.1 20 183-202 25-44 (74)
8 3rko_J NADH-quinone oxidoreduc 45.0 98 0.0033 23.4 12.1 36 167-202 127-164 (184)
9 3o7q_A L-fucose-proton symport 39.8 1.5E+02 0.0052 24.1 12.0 22 65-86 68-89 (438)
10 4aps_A DI-OR tripeptide H+ sym 39.4 1.7E+02 0.0057 24.5 15.5 22 65-86 61-83 (491)
11 1pw4_A Glycerol-3-phosphate tr 32.1 2.1E+02 0.0071 23.4 13.1 11 143-153 368-378 (451)
12 4dx5_A Acriflavine resistance 21.7 2.7E+02 0.0091 26.7 8.0 51 140-190 885-935 (1057)
13 2xut_A Proton/peptide symporte 21.2 3.1E+02 0.011 23.0 7.8 139 77-216 362-520 (524)
14 2jp3_A FXYD domain-containing 20.9 42 0.0015 20.9 1.4 18 184-201 24-41 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.39 E-value=6.4e-13 Score=99.02 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhh-hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169 130 YAAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 201 (227)
Q Consensus 130 ~l~v~~s~~~~~l~~~~~~~~~~~~~s~~-~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~ 201 (227)
.+++++++++|++|.+++++.+++++..+ .++.|+++++++++++||++++.+++|+++|++|+++..+.++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 36777899999999999999999999888 8999999999999999999999999999999999999987553
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.09 E-value=2.2e-09 Score=77.01 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhh-hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169 130 YAAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 200 (227)
Q Consensus 130 ~l~v~~s~~~~~l~~~~~~~~~~~~~s~~-~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~ 200 (227)
.+++++..+++.+|.+++|+.+.+++..+ ..+.|+++.+++++++||++++.+++|+.+|++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666788999999999999999999887 899999999999999999999999999999999999987654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=92.19 E-value=0.039 Score=38.78 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.9
Q ss_pred ccccccccCcchhhhhHHhhhhhhhHHH
Q 027169 2 EKVAIRSRSSQAKILGTVVSIAGAFIVS 29 (227)
Q Consensus 2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 29 (227)
+.+++||++++.|++|+.+.++|++++.
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999985
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=89.46 E-value=0.075 Score=38.92 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=20.3
Q ss_pred ccccccccCcchhhhhHHhhhhhhhHHHH
Q 027169 2 EKVAIRSRSSQAKILGTVVSIAGAFIVSL 30 (227)
Q Consensus 2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 30 (227)
+.+++||++++.+++|+++.++|++++..
T Consensus 75 g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999864
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=56.20 E-value=88 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=6.5
Q ss_pred hhHHHHHHHhhhhhc
Q 027169 184 IGTVVIAFGFYAVIW 198 (227)
Q Consensus 184 iG~~li~~Gv~l~~~ 198 (227)
.++..++.++.....
T Consensus 457 ~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 457 FGLGSVVLGIVLVFL 471 (491)
T ss_dssp THHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=50.16 E-value=64 Score=27.07 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=22.9
Q ss_pred hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccc
Q 027169 159 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 202 (227)
Q Consensus 159 ~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~ 202 (227)
....++.+.+...+.+-..-....+.|..+++.|+.+..+.+++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555544433322221223456777888888777654433
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=47.81 E-value=11 Score=24.00 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhhhhhccccc
Q 027169 183 LIGTVVIAFGFYAVIWAQGK 202 (227)
Q Consensus 183 ~iG~~li~~Gv~l~~~~~~~ 202 (227)
++++++.++|++++...|-+
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 34455666788877665543
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=44.98 E-value=98 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCCchhhhhHHHHH--HHhhhhhccccc
Q 027169 167 VFMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQGK 202 (227)
Q Consensus 167 ~l~~~~~lgE~~~~~~~iG~~li~--~Gv~l~~~~~~~ 202 (227)
--+|..++++-.-+.+..+..+.+ +|.....+++++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467888899988888999987775 566666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=39.76 E-value=1.5e+02 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 027169 65 TVTCFSSATWKIFQAAVLKEYP 86 (227)
Q Consensus 65 l~aa~~~a~~~vl~k~~~~~~~ 86 (227)
....+.+.+..+...++.+++.
T Consensus 68 ~~~~~~~~i~~~~~G~l~dr~g 89 (438)
T 3o7q_A 68 SAFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHHHHhc
Confidence 3444555666666677777766
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=39.40 E-value=1.7e+02 Score=24.46 Aligned_cols=22 Identities=5% Similarity=-0.185 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cC
Q 027169 65 TVTCFSSATWKIFQAAVLKE-YP 86 (227)
Q Consensus 65 l~aa~~~a~~~vl~k~~~~~-~~ 86 (227)
-...+...+..+...++.++ ..
T Consensus 61 ~~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 61 AIYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 34455666667777777777 56
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=32.05 E-value=2.1e+02 Score=23.35 Aligned_cols=11 Identities=9% Similarity=-0.200 Sum_probs=5.5
Q ss_pred HHHHHhccCch
Q 027169 143 IAWCLQKKGPV 153 (227)
Q Consensus 143 ~~~~~~~~~~~ 153 (227)
+....+..++.
T Consensus 368 ~~~~~~~~~~~ 378 (451)
T 1pw4_A 368 GLHALELAPKK 378 (451)
T ss_dssp HHHHHHTSCTT
T ss_pred HHHHHHHhchh
Confidence 34555555544
No 12
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=21.69 E-value=2.7e+02 Score=26.73 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHH
Q 027169 140 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIA 190 (227)
Q Consensus 140 ~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~ 190 (227)
|.+.....+........++.....+.+.+.+..++|.+++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444444555555555555555555666777778899999999999877664
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=21.22 E-value=3.1e+02 Score=22.99 Aligned_cols=139 Identities=7% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCc---h
Q 027169 77 FQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP---V 153 (227)
Q Consensus 77 l~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~---~ 153 (227)
..++..++.. +.......++..++.+..+......................+..++......-..+....+..++ .
T Consensus 362 ~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 440 (524)
T 2xut_A 362 AIERMGVKLT-ALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440 (524)
T ss_dssp ---------C-CHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT
T ss_pred HHHhcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh
Q ss_pred hhhhhhchHHHHHHHHHHHHhCCCCCc-----------------hhhhhHHHHHHHhhhhhccccccccccCCCCCCCcc
Q 027169 154 FVALFKPLGTAIAVFMAVMFLGETPHL-----------------GSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 216 (227)
Q Consensus 154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~-----------------~~~iG~~li~~Gv~l~~~~~~~~~~~~~~~~~~~~~ 216 (227)
++.-+..+.--.+..++-.+.+--.+. ..+.++..++.+++.....++.++++.++.+.+.|+
T Consensus 441 ~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (524)
T 2xut_A 441 TIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQATGSEN 520 (524)
T ss_dssp TTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
No 14
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.94 E-value=42 Score=20.89 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=10.9
Q ss_pred hhHHHHHHHhhhhhcccc
Q 027169 184 IGTVVIAFGFYAVIWAQG 201 (227)
Q Consensus 184 iG~~li~~Gv~l~~~~~~ 201 (227)
+++++.++|++++...|-
T Consensus 24 fA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHHcCcc
Confidence 445555677777765543
Done!