Query 027169
Match_columns 227
No_of_seqs 118 out of 1408
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 09:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 57.0 37 0.0027 25.8 13.8 15 139-153 361-375 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 54.7 37 0.0027 25.0 9.9 19 68-86 269-287 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 49.9 49 0.0035 25.0 14.9 47 59-107 61-107 (447)
4 d1iwga8 f.35.1.1 (A:513-566,A: 47.1 45 0.0033 23.8 10.6 64 124-190 58-121 (222)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 21.6 40 0.0029 15.3 2.9 19 59-77 3-21 (27)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 16.9 62 0.0045 22.5 3.9 45 147-191 60-104 (199)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 10.2 1.1E+02 0.0081 15.0 3.6 21 55-75 15-35 (37)
8 d2iuba2 f.17.3.1 (A:286-349) M 6.4 1.6E+02 0.011 16.1 2.3 11 180-190 42-52 (64)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 5.1 1.9E+02 0.014 17.1 2.2 11 190-200 32-42 (91)
10 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.3 3.7E+02 0.027 15.4 3.1 22 127-149 44-65 (75)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.01 E-value=37 Score=25.80 Aligned_cols=15 Identities=13% Similarity=-0.179 Sum_probs=6.8
Q ss_pred HHHHHHHHHhccCch
Q 027169 139 RSSIIAWCLQKKGPV 153 (227)
Q Consensus 139 ~~~l~~~~~~~~~~~ 153 (227)
....+.......++.
T Consensus 361 ~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 361 VMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCHH
Confidence 334444455444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=54.65 E-value=37 Score=25.03 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 027169 68 CFSSATWKIFQAAVLKEYP 86 (227)
Q Consensus 68 a~~~a~~~vl~k~~~~~~~ 86 (227)
.+.......+..+..++..
T Consensus 269 ~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 269 ELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHTTHHHHHHHHC
T ss_pred ccccccchhhhhhhhcccc
Confidence 3334444444445545544
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.89 E-value=49 Score=25.05 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHH
Q 027169 59 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVS 107 (227)
Q Consensus 59 ~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~ 107 (227)
.|.+.. ...+.+++..+....+.+++.+ -.......+..++..+..+
T Consensus 61 ~g~~~s-~~~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~~~~~ 107 (447)
T d1pw4a_ 61 LGFALS-GISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVMLFMG 107 (447)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHhhcc
Confidence 344433 3345566677777777777763 4344444444444444333
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=47.12 E-value=45 Score=23.84 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHH
Q 027169 124 QRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIA 190 (227)
Q Consensus 124 ~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~ 190 (227)
+...++.++++ +-+.+.....+....+.+-+...-.-+.+.+.+..+.+.+++....+|.++.+
T Consensus 58 ~~~~~~~la~i---~i~liL~~~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 58 QAPSLYAISLI---VVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp THHHHHHHHHH---HHHHHHHHTTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchh
Confidence 44444444443 22333333334444443333333333455667777899999999988877755
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.56 E-value=40 Score=15.33 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027169 59 LGGLLLTVTCFSSATWKIF 77 (227)
Q Consensus 59 ~G~l~~l~aa~~~a~~~vl 77 (227)
+|.+..-++.++||.|.-.
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5777777888888887543
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.87 E-value=62 Score=22.54 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=28.8
Q ss_pred HhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHH
Q 027169 147 LQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAF 191 (227)
Q Consensus 147 ~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~ 191 (227)
.+...+...........+........++|.+++.....+..+.+.
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 444455555555555555566666677888888887777666653
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.22 E-value=1.1e+02 Score=14.99 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 027169 55 SNWALGGLLLTVTCFSSATWK 75 (227)
Q Consensus 55 ~~~~~G~l~~l~aa~~~a~~~ 75 (227)
...-+|.++.+.-++.++.|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 335679888888888888775
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.37 E-value=1.6e+02 Score=16.11 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.3
Q ss_pred chhhhhHHHHH
Q 027169 180 LGSLIGTVVIA 190 (227)
Q Consensus 180 ~~~~iG~~li~ 190 (227)
+...+++.+++
T Consensus 42 ~~~~~~~~~~~ 52 (64)
T d2iuba2 42 YPVVLAVMGVI 52 (64)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.08 E-value=1.9e+02 Score=17.11 Aligned_cols=11 Identities=9% Similarity=-0.284 Sum_probs=4.7
Q ss_pred HHHhhhhhccc
Q 027169 190 AFGFYAVIWAQ 200 (227)
Q Consensus 190 ~~Gv~l~~~~~ 200 (227)
+.|+++....|
T Consensus 32 V~~~~~~~~~r 42 (91)
T d1fftb2 32 AILMAVGFAWK 42 (91)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHhhhee
Confidence 34444444333
No 10
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.27 E-value=3.7e+02 Score=15.39 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027169 127 AVIYAAIVGTVIRSSIIAWCLQK 149 (227)
Q Consensus 127 ~li~l~v~~s~~~~~l~~~~~~~ 149 (227)
-+++.+. ..+++|.+|.|+-++
T Consensus 44 ~~l~v~P-Pfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 44 CILRVAP-PFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hceEEcC-HHHHHHHHHHHHHHH
Confidence 4455544 778999999998764
Done!