BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027171
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EXN|A Chain A, Solution Structure For The Protein Coded By Gene Locus
Bb0938 Of Bordetella Bronchiseptica. Northeast
Structural Genomics Target Bor11
Length = 136
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 14 PIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEG 73
PI C + + A + ++W+V N+ G+ + P+LA V EL
Sbjct: 8 PIAECGATTQSEAAA-------YQKRWLVANDAGQWLNRDLCPRLAEVSVEL-------- 52
Query: 74 WEPTGRSFMVIRAPGMQALKISLSKPRDIADGVS----VWEWCGSALAEGAEASNWFTNY 129
++V++APGM L I L D D V V E + EG A+ W +N+
Sbjct: 53 ----RMGYLVLKAPGMLRLDIPLDVIED-DDSVRYQMLVGEQTVDVVDEGELAAAWISNH 107
Query: 130 LGKPSRLVRYNAE 142
G P R+++ + +
Sbjct: 108 AGVPCRILKVHPD 120
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 79 RSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEA--SNWFTNYLGK---- 132
R F M+ + + K R+IA ++ EW G L+ G EA +Y+ K
Sbjct: 404 RYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNT 463
Query: 133 ---PSRLVRYNA-ESETRPVDPK 151
P VR A E E P+DP+
Sbjct: 464 VYHPVGTVRMGAVEDEMSPLDPE 486
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 79 RSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEA--SNWFTNYLGK---- 132
R F M+ + + K R+IA ++ EW G L+ G EA +Y+ K
Sbjct: 404 RYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNT 463
Query: 133 ---PSRLVRYNA-ESETRPVDPK 151
P VR A E E P+DP+
Sbjct: 464 VYHPVGTVRMGAVEDEMSPLDPE 486
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 79 RSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEA--SNWFTNYLGK---- 132
R F M+ + + K R+IA ++ EW G L+ G EA +Y+ K
Sbjct: 404 RYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNT 463
Query: 133 ---PSRLVRYNA-ESETRPVDPK 151
P VR A E E P+DP+
Sbjct: 464 AYHPVGTVRMGAVEDEMSPLDPE 486
>pdb|1WGZ|A Chain A, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
pdb|1WGZ|B Chain B, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
pdb|1WGZ|C Chain C, Crystal Structure Of Carboxypeptidase 1 From Thermus
Thermophilus
Length = 510
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 29/163 (17%)
Query: 53 RNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGV-SVWEW 111
R E +LAL EL E E W R + + P+D DGV W
Sbjct: 373 RLELELALFRGELSPEDLPEAWAEKYRDHLGV-------------APKDYKDGVMQDVHW 419
Query: 112 CGSALAEGAEASNWFTNYLGKPSRLVRY--NAESETRPVDPKYAAGEKIMFSDCYPFMLL 169
G +F Y ++ AE+E P++P++A GE PF+
Sbjct: 420 AGGLF-------GYFPTYTLGNLYAAQFFQKAEAELGPLEPRFARGE------FQPFLDW 466
Query: 170 SQGSLDALNKLLKEPIPINRFRPKYKSESYNICLLSKSILCLY 212
++ + A + + + R + S + L K LY
Sbjct: 467 TRARIHAEGSRFRPRVLVERVTGEAPSARPFLAYLEKKYAALY 509
>pdb|3HOA|A Chain A, Crystal Structure Of The Thermus Thermophilus M32
Carboxypeptidase
pdb|3HOA|B Chain B, Crystal Structure Of The Thermus Thermophilus M32
Carboxypeptidase
Length = 509
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 29/163 (17%)
Query: 53 RNEPKLALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGV-SVWEW 111
R E +LAL EL E E W R + + P+D DGV W
Sbjct: 373 RLELELALFRGELSPEDLPEAWAEKYRDHLGV-------------APKDYKDGVMQDVHW 419
Query: 112 CGSALAEGAEASNWFTNYLGKPSRLVRY--NAESETRPVDPKYAAGEKIMFSDCYPFMLL 169
G +F Y ++ AE+E P++P++A GE PF+
Sbjct: 420 AGGLF-------GYFPTYTLGNLYAAQFFQKAEAELGPLEPRFARGE------FQPFLDW 466
Query: 170 SQGSLDALNKLLKEPIPINRFRPKYKSESYNICLLSKSILCLY 212
++ + A + + + R + S + L K LY
Sbjct: 467 TRARIHAEGSRFRPRVLVERVTGEAPSARPFLAYLEKKYAALY 509
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 67 NEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWE 110
+E F E ++ + V+ P +++L++ L R++ GVS+WE
Sbjct: 339 SEHFFE-YKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWE 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,712,537
Number of Sequences: 62578
Number of extensions: 264711
Number of successful extensions: 632
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 7
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)