Query 027171
Match_columns 227
No_of_seqs 142 out of 1046
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 6.4E-47 1.4E-51 372.8 21.7 205 3-220 516-737 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 2.4E-43 5.2E-48 300.0 16.7 197 5-220 2-198 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 1.1E-38 2.4E-43 275.0 9.9 208 2-221 40-262 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 1.5E-36 3.3E-41 235.3 7.8 119 4-133 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 99.1 6E-11 1.3E-15 92.9 4.6 60 156-216 11-73 (133)
6 KOG2142 Molybdenum cofactor su 99.0 1.5E-10 3.3E-15 109.4 1.8 180 6-220 465-656 (728)
7 PRK14499 molybdenum cofactor b 73.5 4.5 9.7E-05 36.3 3.9 36 164-200 203-239 (308)
8 KOG2362 Uncharacterized Fe-S p 37.5 24 0.00052 31.7 2.1 47 16-64 63-113 (336)
9 PRK14499 molybdenum cofactor b 37.0 43 0.00092 30.1 3.6 36 3-39 161-197 (308)
10 PF05962 HutD: HutD; InterPro 31.5 1.6E+02 0.0034 24.2 6.0 51 4-55 15-73 (184)
11 KOG0969 DNA polymerase delta, 25.0 62 0.0013 32.9 2.8 25 114-138 734-758 (1066)
12 COG4110 Uncharacterized protei 20.9 2.4E+02 0.0051 23.2 4.9 40 59-101 114-153 (200)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=6.4e-47 Score=372.80 Aligned_cols=205 Identities=30% Similarity=0.509 Sum_probs=176.9
Q ss_pred CceEEeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceE
Q 027171 3 AAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (227)
Q Consensus 3 ~~~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (227)
..++|++|||||||||+|++| ++|++++.||.|||+|||+|++|+++|||++|+|++|+++++.+ ++.|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v-~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l 584 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSV-ERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKL 584 (805)
T ss_pred CCCEEEEEEEeccccCCCcee-eEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeE
Confidence 356899999999999999999 99999999999999999999999999999999999999999642 5689
Q ss_pred EEEcCCCc-eEEEecCCCCC--CccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCC-----cCCC-
Q 027171 83 VIRAPGMQ-ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA- 153 (227)
Q Consensus 83 ~l~~p~~~-~l~v~l~~~~~--~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~~r~~~-----~~~~- 153 (227)
++++|+++ ++.|++++... ...++++|++.+.+++||+++++|||++||++|+|+++.+... |..+ +.+.
T Consensus 585 ~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~ 663 (805)
T PLN02724 585 VVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCG 663 (805)
T ss_pred EEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-cccccccccccccc
Confidence 99999987 69999986532 3467899999999999999999999999999999999976543 4332 1111
Q ss_pred -CCCeeeccCCCceeeeeHHHHHHHHHHhCC-------CCCCCcccccEEEeccCcccceeceeeEEEEeeeeEE
Q 027171 154 -AGEKIMFSDCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPKYKSESYNICLLSKSILCLYVYSICFSL 220 (227)
Q Consensus 154 -~~~~~~f~D~~pillis~aSl~~L~~~l~~-------~v~~~RFRpNIvI~g~~~~~~e~~~~~~~i~~~~~~~ 220 (227)
...+++|+|++|+||+|++||++||+++++ +++++||||||||+|.+ +|+||-|+-..||+.-|.+
T Consensus 664 ~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~-~f~ED~W~~l~IG~~~~~~ 737 (805)
T PLN02724 664 DDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGE-AYAEDEWQSLSIGDAEFTV 737 (805)
T ss_pred CcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCC-CccccCceEEEECCEEEEE
Confidence 234689999999999999999999999973 69999999999999987 5888887777777766654
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=300.05 Aligned_cols=197 Identities=25% Similarity=0.463 Sum_probs=176.8
Q ss_pred eEEeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceEEE
Q 027171 5 AKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVI 84 (227)
Q Consensus 5 ~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l 84 (227)
.+|++||||||||++|+.+ +++.+...||.+||+|||+|++|+++|+|++|+|.++++...+ ..+++
T Consensus 2 ~~ls~L~iyPvKSl~g~~l-~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~~------------~~~~l 68 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERL-SRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYEH------------DGLRL 68 (270)
T ss_pred ccchheeeeccccccchhh-hhheeeccCCccceEEEEEcCCCceeccccccceeEeeeeccc------------cceEE
Confidence 3599999999999999999 9999999999999999999999999999999999999996643 46899
Q ss_pred EcCCCceEEEecCCCCCCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCCCCCCeeeccCCC
Q 027171 85 RAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCY 164 (227)
Q Consensus 85 ~~p~~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~~r~~~~~~~~~~~~~f~D~~ 164 (227)
++++++.+.+.... .+...++||++...+...++++++|||.|||.+++|++.+.+ ..|.++.. +.....|+|++
T Consensus 69 ~~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~-~~r~v~~~--p~~~~~fadg~ 143 (270)
T COG3217 69 TAPDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAG-FARRVKAG--PAVPVTFADGY 143 (270)
T ss_pred ecCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCcc-ccccccCC--CceeeEecCCc
Confidence 99999988887765 456789999999999999999999999999999999998764 33444433 44678999999
Q ss_pred ceeeeeHHHHHHHHHHhCCCCCCCcccccEEEeccCcccceeceeeEEEEeeeeEE
Q 027171 165 PFMLLSQGSLDALNKLLKEPIPINRFRPKYKSESYNICLLSKSILCLYVYSICFSL 220 (227)
Q Consensus 165 pillis~aSl~~L~~~l~~~v~~~RFRpNIvI~g~~~~~~e~~~~~~~i~~~~~~~ 220 (227)
|+|++|++||++|+++.+.+++++|||||||++|.+ +|.|++|.-..||++=|-+
T Consensus 144 p~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~-a~aEd~w~~i~IG~v~F~~ 198 (270)
T COG3217 144 PILLFNTASLADLRRRVPANLEMERFRPNLVVEGED-AFAEDSWKSIRIGGVRFDV 198 (270)
T ss_pred eEEEEccccHHHHhhhccCCCChhhCCCceEEeecc-cccccCceEEEEccEEEEE
Confidence 999999999999999999999999999999999998 6999999988898887764
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=274.99 Aligned_cols=208 Identities=35% Similarity=0.575 Sum_probs=168.7
Q ss_pred CCceEEeeeeeecccccCceeecceeeEeccC----cccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCC-C
Q 027171 2 EAAAKVKSIFVYPIKSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWE-P 76 (227)
Q Consensus 2 ~~~~~V~~L~iyPIKS~~g~~v~~~~~l~~~G----l~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~-~ 76 (227)
.+.++|++|++||||||+|++| .++.++..| ..+||.|++++++|+++|||..|+|++|+.......+..+|. +
T Consensus 40 ~~vg~v~slhiyPiKSC~~~~v-~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~ 118 (336)
T KOG2362|consen 40 VPVGRVKSLHIYPIKSCKGIDV-FQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPGP 118 (336)
T ss_pred EEeeeeeeeEEEEeccccccch-hHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCCC
Confidence 4578999999999999999999 999999988 778999999999999999999999999999986554444443 2
Q ss_pred CCCceEEEEcCCCceEEEecCCCCCCccceEEecccccccccchHHHHHHHhhh----------CCCeEEEEecCCCCCC
Q 027171 77 TGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYL----------GKPSRLVRYNAESETR 146 (227)
Q Consensus 77 ~~~~~l~l~~p~~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~w~S~~L----------g~p~rLv~~~~~~~~r 146 (227)
.....+.+.+++++.+.+ ....|+....+++||+..+.|||++. ++++++.+.......+
T Consensus 119 ~~~s~~~~~~l~~~~~~~----------~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~ 188 (336)
T KOG2362|consen 119 EKDSVLVFRVLGNKRLKV----------ATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETW 188 (336)
T ss_pred cchhhhhhhhccCCcccc----------ccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccc
Confidence 222233333444443333 33446666677777777766666655 5678888877666678
Q ss_pred CCCcCCCCCCeeeccCCCceeeeeHHHHHHHHHHhCCCCCCCcccccEEEeccCcccceeceeeEEEEeeeeEEE
Q 027171 147 PVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPKYKSESYNICLLSKSILCLYVYSICFSLY 221 (227)
Q Consensus 147 ~~~~~~~~~~~~~f~D~~pillis~aSl~~L~~~l~~~v~~~RFRpNIvI~g~~~~~~e~~~~~~~i~~~~~~~~ 221 (227)
...|.+.+++..+|+|.+|+||+|++||++||++|.++|+++||||||+|||++ +|.||-|--..||+.=|+-.
T Consensus 189 ~~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~-~~~ED~W~ei~Igd~~~~~v 262 (336)
T KOG2362|consen 189 WNNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCD-AFAEDKWDEIRIGDAEFQCV 262 (336)
T ss_pred cCCCccCccccccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCc-cccccccceEEEccEEEEEE
Confidence 888888888999999999999999999999999999999999999999999999 59999999999998877743
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=1.5e-36 Score=235.27 Aligned_cols=119 Identities=41% Similarity=0.810 Sum_probs=65.8
Q ss_pred ceEEeeeeeecccccCceeecceeeEeccCcc-cCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceE
Q 027171 4 AAKVKSIFVYPIKSCRGISVCQQAPLTPTGFR-WDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (227)
Q Consensus 4 ~~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~-~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (227)
|++|++||+||||||+|+++ +++++++.|++ +||+|||+|++|+|+|||++|+|++|++.++.+ .+.|
T Consensus 1 m~~v~~L~iyPIKS~~g~~~-~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l 69 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEV-DEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTL 69 (120)
T ss_dssp --------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEE
T ss_pred Cccccccccccccccccccc-cccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEE
Confidence 57999999999999999999 99999999997 999999999999999999999999999999642 6899
Q ss_pred EEEcCCCceEEEecCCCCCCccceEEecccccccccchHHHHHHHhhhCCC
Q 027171 83 VIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKP 133 (227)
Q Consensus 83 ~l~~p~~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p 133 (227)
++++|+++.+.+++.........+.+|++.+.+++||+++++|||++||+|
T Consensus 70 ~l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 70 TLSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EEE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EEECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 999999999999998555667889999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.12 E-value=6e-11 Score=92.87 Aligned_cols=60 Identities=35% Similarity=0.331 Sum_probs=44.3
Q ss_pred CeeeccCCCceeeeeHHHHHHHHHHhCCCC-CCCcccccEEEeccCcccceece--eeEEEEee
Q 027171 156 EKIMFSDCYPFMLLSQGSLDALNKLLKEPI-PINRFRPKYKSESYNICLLSKSI--LCLYVYSI 216 (227)
Q Consensus 156 ~~~~f~D~~pillis~aSl~~L~~~l~~~v-~~~RFRpNIvI~g~~~~~~e~~~--~~~~i~~~ 216 (227)
....|+|.+|++|+|++|+++|+++++++. +++||||||+|+|.+ +|+|+-| +=..||+-
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~-~f~Ed~w~~~~l~iG~~ 73 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLP-PFDEDDWCGDRLRIGDA 73 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T----TCCGBTEEEECTTE
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccc-cccccccceeeeccCCE
Confidence 567899999999999999999999999875 999999999999988 5888877 55556653
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=98.98 E-value=1.5e-10 Score=109.42 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=114.2
Q ss_pred EEeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceEEEE
Q 027171 6 KVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIR 85 (227)
Q Consensus 6 ~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~ 85 (227)
.+.++..|||| |+.+++ +++.+...|+.|||.||++|-+|..+++++.+.+++|++.++- +.
T Consensus 465 ~d~~~~s~~~~-~~~~EI-~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~----------------~~ 526 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEI-EEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV----------------QE 526 (728)
T ss_pred hhhhhhhhhhh-hceeEe-eccCccccccccccccccccccccceeeecccceeeeccccch----------------hh
Confidence 45678899999 999999 9999999999999999999999999999999999999999842 11
Q ss_pred cCCCceEEEecCCC--CC--CccceEEecccccccccchHHHHHHHhhhCCCe------EEEEecCCC--CCCCCCcCCC
Q 027171 86 APGMQALKISLSKP--RD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPS------RLVRYNAES--ETRPVDPKYA 153 (227)
Q Consensus 86 ~p~~~~l~v~l~~~--~~--~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~------rLv~~~~~~--~~r~~~~~~~ 153 (227)
..+++ .+|+++.. .+ ....+..+ .+++++|+++....|.++-.|+.. .| +..+.. ..+.+.-..-
T Consensus 527 d~~~~-~~vs~~~sl~~~~a~~~s~~d~-~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl-~~~~~~~~~~~~~nlvq~ 603 (728)
T KOG2142|consen 527 DEQSE-RRVSFPTSLEQGEASKCSSYDC-PPCRGIDHVDSLGLNLTTNRGRELLNWLVQSL-RNLQHSESSSTTVNLVQI 603 (728)
T ss_pred hcccc-eeecchhhhhhhhhhhcccccC-ccccccchhhhhhHHhhhhhhhhHHHHHHHhc-ccccccccccccccceee
Confidence 11122 23333211 11 11112222 457899999999999998777641 12 110000 0000000000
Q ss_pred CCCeeeccCCCceeeeeHHHHHHHHHHhCCCCCCCcccccEEEeccCcccceeceeeEEEEeeeeEE
Q 027171 154 AGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPKYKSESYNICLLSKSILCLYVYSICFSL 220 (227)
Q Consensus 154 ~~~~~~f~D~~pillis~aSl~~L~~~l~~~v~~~RFRpNIvI~g~~~~~~e~~~~~~~i~~~~~~~ 220 (227)
.+.+..+..+..+.. ++.| -..|||.||||++.. .+-+....|.+++.|=||-
T Consensus 604 ygpk~~~erG~~~~f----nl~d---------~~~~fr~p~IV~~la-e~E~isl~~~~l~~iri~d 656 (728)
T KOG2142|consen 604 YGPKTKYERGPAVAF----NLFD---------LSKRFRAPIIVNKLA-EREEISLGELSLGHIRIQD 656 (728)
T ss_pred ecCccccccChhhee----ehhh---------hhccccchhhhcchh-hhhcccccceeeeeeEEec
Confidence 001111111111110 1122 257999999999988 5899999999999998874
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=73.46 E-value=4.5 Score=36.33 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred CceeeeeHHHHHHHHHHhCCC-CCCCcccccEEEeccC
Q 027171 164 YPFMLLSQGSLDALNKLLKEP-IPINRFRPKYKSESYN 200 (227)
Q Consensus 164 ~pillis~aSl~~L~~~l~~~-v~~~RFRpNIvI~g~~ 200 (227)
..+++++.++++.++ .++.+ +++-.||.||+++|..
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gid 239 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLD 239 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcC
Confidence 579999999999987 45655 9999999999999975
No 8
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=37.51 E-value=24 Score=31.73 Aligned_cols=47 Identities=0% Similarity=-0.323 Sum_probs=31.2
Q ss_pred cccCceeecceeeEeccC----cccCceeEEEeCCCceEEecCCcceeeeEEe
Q 027171 16 KSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETE 64 (227)
Q Consensus 16 KS~~g~~v~~~~~l~~~G----l~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~ 64 (227)
++|.+... .+++....+ ... +-|++....+-.+++.+.+....+.-.
T Consensus 63 q~~ct~~g-~~~e~~~DR~~lvVn~-kg~~iTaRv~P~l~~ies~~~~~~~~v 113 (336)
T KOG2362|consen 63 QYKCTPLG-PSMEFLWDRTFLVVNE-KGKFITARVKPKLVLIESEMPDGAFLV 113 (336)
T ss_pred HhhcCCCC-cchhheeeceEEEEec-cceEEEeeccceEEEeecccccceeEE
Confidence 56666555 555555433 334 889999888888899887766554444
No 9
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=36.98 E-value=43 Score=30.11 Aligned_cols=36 Identities=31% Similarity=0.249 Sum_probs=31.2
Q ss_pred CceEEeeeeeecccccCceeecceeeEe-ccCcccCce
Q 027171 3 AAAKVKSIFVYPIKSCRGISVCQQAPLT-PTGFRWDRQ 39 (227)
Q Consensus 3 ~~~~V~~L~iyPIKS~~g~~v~~~~~l~-~~Gl~~DR~ 39 (227)
++++|.+|++-|-++..=.++ ++..+. ..|+++|+.
T Consensus 161 ~~~~VlsI~is~~~gi~K~~v-~~~~~v~~~GieGD~H 197 (308)
T PRK14499 161 KTAKVVSINISRQKGTPKEPV-EEAVLIENHGIEGDAH 197 (308)
T ss_pred CCCEEEEEEeCCCCCccceec-CceEEEccCCCCCCcC
Confidence 578999999999999999999 876554 799999983
No 10
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=31.53 E-value=1.6e+02 Score=24.21 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=35.0
Q ss_pred ceEEeeeeeecccc---cCceeecceeeEeccCc----c-cCceeEEEeCCCceEEecCC
Q 027171 4 AAKVKSIFVYPIKS---CRGISVCQQAPLTPTGF----R-WDRQWMVINNNGRAYTQRNE 55 (227)
Q Consensus 4 ~~~V~~L~iyPIKS---~~g~~v~~~~~l~~~Gl----~-~DR~~~l~d~~g~~lt~r~~ 55 (227)
-|+=.+|.+||-.+ -=.-.+ +.|.+...|- + +||..++++++|-.++....
T Consensus 15 gG~T~Ei~~~P~~~~~~~F~wRi-S~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 15 GGTTREIAIYPEGSAKRDFDWRI-SIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp SEEEEEEEE-SSSCCCCC-SEEE-EEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred CeEEEEEEEcCCCCccCCceEEE-EEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 35678999999876 223567 7888888773 2 69999999998877776655
No 11
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair]
Probab=24.98 E-value=62 Score=32.93 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.6
Q ss_pred cccccchHHHHHHHhhhCCCeEEEE
Q 027171 114 SALAEGAEASNWFTNYLGKPSRLVR 138 (227)
Q Consensus 114 ~~~d~g~~~~~w~S~~Lg~p~rLv~ 138 (227)
.+...|.|+++|.|..+-.|++|-.
T Consensus 734 ~am~lg~eaa~~vs~~F~~PIkLEF 758 (1066)
T KOG0969|consen 734 EAMKLGREAAEYVSSKFVKPIKLEF 758 (1066)
T ss_pred HHHHHhHHHHHHHHhcCCCCceeEe
Confidence 4778899999999999999987754
No 12
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=20.86 E-value=2.4e+02 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.403 Sum_probs=27.8
Q ss_pred eeeEEecCCcccccCCCCCCCceEEEEcCCCceEEEecCCCCC
Q 027171 59 ALVETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRD 101 (227)
Q Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~l~l~~p~~~~l~v~l~~~~~ 101 (227)
.+|.+.+=.+ ...|..+ ++.++++.|+.+++++.+++...
T Consensus 114 vLi~aFIYEG--~~~w~~~-dGvvTik~P~~~~I~~qm~e~~~ 153 (200)
T COG4110 114 VLIYAFIYEG--VPSWDKT-DGVVTIKVPDQPPIETQLTEGEN 153 (200)
T ss_pred eeeEEEEecC--CcCcccc-CCEEEEecCCCCceEEEccCCcc
Confidence 5666665322 2235444 68999999999999999986543
Done!