Query 027171
Match_columns 227
No_of_seqs 142 out of 1046
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 4.9E-36 1.7E-40 236.1 11.4 126 7-152 1-129 (136)
2 1oru_A YUAD protein; structura 98.6 1.9E-07 6.5E-12 76.9 9.8 37 163-199 66-103 (195)
3 1o65_A Hypothetical protein YI 89.1 0.25 8.5E-06 41.7 3.3 37 164-200 67-106 (246)
4 1n0x_P B2.1 peptide, immunoglo 26.8 37 0.0013 17.7 1.7 18 36-53 1-18 (26)
5 2gdl_A Myeloid antimicrobial p 21.6 23 0.0008 19.2 0.3 11 186-196 13-23 (31)
6 3lyd_A Uncharacterized protein 19.5 35 0.0012 26.5 1.1 13 185-197 44-56 (161)
7 3esg_A HUTD, putative uncharac 14.9 4.3E+02 0.015 20.9 6.5 49 5-54 29-84 (193)
8 1hym_B CMTI-V, hydrolyzed cucu 14.7 1.4E+02 0.0048 15.9 2.4 17 34-50 2-18 (26)
9 2rhf_A DNA helicase RECQ; HRDC 13.9 63 0.0022 21.3 1.1 23 162-184 23-45 (77)
10 2jz6_A 50S ribosomal protein L 13.1 60 0.0021 22.1 0.8 12 184-195 28-39 (77)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=4.9e-36 Score=236.10 Aligned_cols=126 Identities=26% Similarity=0.468 Sum_probs=113.0
Q ss_pred EeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceEEEEc
Q 027171 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (227)
Q Consensus 7 V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (227)
|++||+||||||+|++| +++. .+||+|||+|++|+|+|||++|+|++|++.++. +.|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l-~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQ-SEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECC-GGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEEC
T ss_pred CceEEEeccccCCceec-CccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEe
Confidence 68999999999999999 9887 999999999999999999999999999999963 5799999
Q ss_pred CCCceEEEecCCCC---CCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCC
Q 027171 87 PGMQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKY 152 (227)
Q Consensus 87 p~~~~l~v~l~~~~---~~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~~r~~~~~~ 152 (227)
||++++.+++++.. .....+++|++.+.+++||+++++|||++||.|+||++++++. .|.+++..
T Consensus 62 pg~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~-~R~~~~~~ 129 (136)
T 2exn_A 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDM-AEVRWPSL 129 (136)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTT-CCCCCCCC
T ss_pred CCCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCC-ccccCccc
Confidence 99999999997654 2456789999999999999999999999999999999998764 46666544
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=98.61 E-value=1.9e-07 Score=76.91 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=34.3
Q ss_pred CCceeeeeHHHHHHHHHHhCCC-CCCCcccccEEEecc
Q 027171 163 CYPFMLLSQGSLDALNKLLKEP-IPINRFRPKYKSESY 199 (227)
Q Consensus 163 ~~pillis~aSl~~L~~~l~~~-v~~~RFRpNIvI~g~ 199 (227)
..++++++.+|+++++++++.+ +++.+||+||+++|.
T Consensus 66 ~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi 103 (195)
T 1oru_A 66 RRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGM 103 (195)
T ss_dssp CCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESC
T ss_pred CceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCC
Confidence 3579999999999999999876 999999999999998
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=89.12 E-value=0.25 Score=41.66 Aligned_cols=37 Identities=5% Similarity=0.024 Sum_probs=33.3
Q ss_pred CceeeeeHHHHHHHHHHhCC---CCCCCcccccEEEeccC
Q 027171 164 YPFMLLSQGSLDALNKLLKE---PIPINRFRPKYKSESYN 200 (227)
Q Consensus 164 ~pillis~aSl~~L~~~l~~---~v~~~RFRpNIvI~g~~ 200 (227)
..+++++.+|++.+++.++. .+++-+||-||+++|.+
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~ 106 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT 106 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc
Confidence 46999999999999998876 49999999999999976
No 4
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=26.85 E-value=37 Score=17.67 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.4
Q ss_pred cCceeEEEeCCCceEEec
Q 027171 36 WDRQWMVINNNGRAYTQR 53 (227)
Q Consensus 36 ~DR~~~l~d~~g~~lt~r 53 (227)
+.|.||+.|-+++++.+.
T Consensus 1 hersymfsdlenrciaae 18 (26)
T 1n0x_P 1 HERSYMFSDLENRCIAAE 18 (26)
T ss_dssp CCCCEEEETTTTEEEECS
T ss_pred CcchhhhhHHHHHHHHHH
Confidence 368899999888888654
No 5
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=21.59 E-value=23 Score=19.20 Aligned_cols=11 Identities=55% Similarity=0.851 Sum_probs=8.3
Q ss_pred CCCcccccEEE
Q 027171 186 PINRFRPKYKS 196 (227)
Q Consensus 186 ~~~RFRpNIvI 196 (227)
.++||||.+.|
T Consensus 13 kirrfrpkvti 23 (31)
T 2gdl_A 13 KIRRFRPKVTI 23 (31)
T ss_dssp SCCCCTTCCHH
T ss_pred HHHhcCCceEE
Confidence 47899997644
No 6
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=19.54 E-value=35 Score=26.53 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCCcccccEEEe
Q 027171 185 IPINRFRPKYKSE 197 (227)
Q Consensus 185 v~~~RFRpNIvI~ 197 (227)
+-..-||||+||.
T Consensus 44 ~~~~~F~pN~vVt 56 (161)
T 3lyd_A 44 TPPQGFTPNIIGT 56 (161)
T ss_dssp SCCSSSCCEEEEE
T ss_pred CCCCCccccEEEE
Confidence 3456799999986
No 7
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=14.89 E-value=4.3e+02 Score=20.89 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=37.2
Q ss_pred eEEeeeeeecccccC--ceeecceeeEeccCc-----ccCceeEEEeCCCceEEecC
Q 027171 5 AKVKSIFVYPIKSCR--GISVCQQAPLTPTGF-----RWDRQWMVINNNGRAYTQRN 54 (227)
Q Consensus 5 ~~V~~L~iyPIKS~~--g~~v~~~~~l~~~Gl-----~~DR~~~l~d~~g~~lt~r~ 54 (227)
|+=.+|.+||-.+.+ .-.+ +.|++...|- -+||..++++.+|-.++...
T Consensus 29 G~TrEI~~~P~~~~~~F~wRi-SiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 29 GSTEEITRDAGTGLEGFGWRL-SIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp EEEEEEEECCCBTTTBCSEEE-EEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred eEEEEEEEcCCCcCCCceEEE-EEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 566789999986544 3567 7899988773 27999999998887776543
No 8
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=14.68 E-value=1.4e+02 Score=15.88 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=12.9
Q ss_pred cccCceeEEEeCCCceE
Q 027171 34 FRWDRQWMVINNNGRAY 50 (227)
Q Consensus 34 l~~DR~~~l~d~~g~~l 50 (227)
+..||-|.++|.+|...
T Consensus 2 f~~~RVrvfvd~~g~V~ 18 (26)
T 1hym_B 2 FRCNRVRIWVNKRGLVV 18 (26)
T ss_dssp CCTTEEEEEEETTTEEE
T ss_pred CCCCEEEEEECCCCcEE
Confidence 45689999999877543
No 9
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=13.89 E-value=63 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCCceeeeeHHHHHHHHHHhCCC
Q 027171 162 DCYPFMLLSQGSLDALNKLLKEP 184 (227)
Q Consensus 162 D~~pillis~aSl~~L~~~l~~~ 184 (227)
|..|+.|.+.++|.++..+.+..
T Consensus 23 ~vpp~~I~~d~~L~~iA~~~P~t 45 (77)
T 2rhf_A 23 GYSAFVVFTNATLEALAARQPRT 45 (77)
T ss_dssp CCCHHHHCCHHHHHHHHHHCCCS
T ss_pred CCCcceeeCHHHHHHHHHhCCCC
Confidence 56789999999999999998763
No 10
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=13.05 E-value=60 Score=22.06 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.6
Q ss_pred CCCCCcccccEE
Q 027171 184 PIPINRFRPKYK 195 (227)
Q Consensus 184 ~v~~~RFRpNIv 195 (227)
.-.-+||.|||-
T Consensus 28 ~kTkR~~~PNLq 39 (77)
T 2jz6_A 28 KKSERWFRPNLQ 39 (77)
T ss_dssp CCCSSSCBTTEE
T ss_pred CccCcccccceE
Confidence 357899999983
Done!