BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027172
         (227 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0C8Q9|Y5902_ARATH Uncharacterized protein At5g19025 OS=Arabidopsis thaliana
           GN=At5g19025 PE=2 SV=3
          Length = 259

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 9/98 (9%)

Query: 137 SRKCGNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRE-------LQAEL 189
           SRKC NP CKG+KKA EFD+QL+TEECVK+   + K +  LP     E       L+AEL
Sbjct: 150 SRKCRNPKCKGMKKAMEFDLQLQTEECVKS--GSVKEIDRLPWKGGSESNPDYECLRAEL 207

Query: 190 KKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQRKIKK 227
           +KMAP NGRAVL+FR++CGC + +LE  GPK+ R+ KK
Sbjct: 208 RKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245


>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana
           GN=At2g26240 PE=3 SV=1
          Length = 108

 Score = 32.0 bits (71), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 97  SAAVFYLVKEEVIGNPLIYSSIGV 120
           SAA+FY V  E+ GNP++ SSIG+
Sbjct: 40  SAALFYYVYTELPGNPVLASSIGI 63


>sp|Q5ZI22|NUPL2_CHICK Nucleoporin-like protein 2 OS=Gallus gallus GN=NUPL2 PE=2 SV=1
          Length = 413

 Score = 30.4 bits (67), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 122 MSCVA--IATWVA-----LLCTSRKCGNPNCKGLKKAAEFDIQLETEECVKNKDS 169
           + CVA  +ATW +       C S + G PN  G ++ +  +++LE   C  N ++
Sbjct: 114 LDCVAKDMATWESSGQWMFSCYSPEAGKPNVSGFREFSAEEVRLEYYNCSANNNT 168


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,251,530
Number of Sequences: 539616
Number of extensions: 2971739
Number of successful extensions: 7647
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7643
Number of HSP's gapped (non-prelim): 9
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)