Query 027172
Match_columns 227
No_of_seqs 38 out of 40
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 09:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i0x_A Hypothetical protein PF 79.3 2.2 7.5E-05 31.1 4.1 44 176-222 36-79 (85)
2 3uyx_A Hemagglutinin; influenz 70.9 2 7E-05 37.3 2.3 42 141-190 16-59 (214)
3 1zpw_X Hypothetical protein TT 53.1 13 0.00043 27.1 3.5 42 176-222 40-81 (90)
4 4es1_A BH0342 protein; ferredo 48.8 18 0.0006 27.4 3.8 46 176-222 46-91 (100)
5 3oq2_A Crispr-associated prote 46.0 15 0.00051 27.5 3.0 46 176-222 49-94 (103)
6 4i78_A Hemagglutinin HA1; infl 42.4 8.3 0.00028 35.4 1.3 42 141-190 67-110 (328)
7 4hqf_A Thrombospondin-related 41.6 5.5 0.00019 32.6 0.0 37 136-182 239-277 (281)
8 3arc_M Photosystem II reaction 41.2 23 0.00078 23.3 2.9 21 71-91 12-32 (36)
9 3ubq_A Hemagglutinin HA1; vira 41.1 15 0.0005 33.8 2.7 41 141-189 65-107 (329)
10 3ceg_A Baculoviral IAP repeat- 39.8 12 0.00043 33.6 2.0 24 173-197 296-319 (323)
11 4fqi_A Hemagglutinin HA1; neut 38.2 12 0.00042 34.4 1.7 42 141-190 67-110 (334)
12 1jsd_A Haemagglutinin (HA1 cha 38.2 17 0.00059 33.2 2.7 42 141-190 63-106 (319)
13 3exc_X Uncharacterized protein 35.3 20 0.00067 26.5 2.1 46 176-222 41-86 (91)
14 4gxx_A Hemagglutinin HA1 chain 32.6 22 0.00074 32.7 2.4 42 141-190 67-110 (331)
15 3rhw_A Avermectin-sensitive gl 32.1 74 0.0025 27.2 5.6 65 70-134 225-298 (347)
16 1ug7_A 2610208M17RIK protein; 32.0 7.9 0.00027 31.5 -0.5 35 146-195 21-55 (128)
17 3eyk_A Hemagglutinin HA1 chain 30.2 22 0.00075 32.6 2.0 40 141-190 64-105 (323)
18 1zza_A Stannin, AG8_1; helix, 29.4 34 0.0012 26.1 2.6 35 54-89 4-38 (90)
19 3ku3_A Hemagglutinin HA1 chain 29.3 21 0.00072 32.8 1.7 42 141-190 65-108 (327)
20 2l61_A EC protein I/II; metall 28.7 15 0.0005 22.8 0.4 9 203-211 4-12 (26)
21 2bbx_A Trap, thrombospondin-re 27.4 16 0.00054 23.6 0.4 13 136-148 25-37 (49)
22 2k9y_A Ephrin type-A receptor 24.3 86 0.0029 19.4 3.5 11 127-137 29-39 (41)
23 2lx0_A Membrane fusion protein 24.0 93 0.0032 19.8 3.5 24 64-87 7-30 (32)
24 3j21_T 50S ribosomal protein L 22.9 14 0.00049 27.5 -0.5 39 147-186 38-78 (86)
25 2ftc_Q L34MT, MRP-L34, 39S rib 21.4 9.8 0.00034 25.2 -1.5 16 189-204 15-30 (38)
26 4a17_R RPL23A, 60S ribosomal p 21.3 16 0.00056 30.1 -0.5 40 146-186 101-142 (150)
27 2aze_B Transcription factor E2 21.1 79 0.0027 24.0 3.3 35 186-223 53-87 (106)
28 3u5e_X 60S ribosomal protein L 21.0 16 0.00056 29.8 -0.6 40 146-186 93-134 (142)
29 3q23_A Virion RNA polymerase; 20.6 33 0.0011 35.8 1.4 29 166-195 855-884 (1118)
30 3uip_D E3 SUMO-protein ligase 20.2 1E+02 0.0034 22.6 3.5 43 149-198 16-59 (67)
No 1
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=79.29 E-value=2.2 Score=31.11 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=38.3
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
+|.+.++++|++||++..-|+.=.|.+++-+ ...+.|++|-++.
T Consensus 36 ~lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~---~~~~~~~~G~~~~ 79 (85)
T 2i0x_A 36 EVTLAEFERIKEGLKKIIDENSDSVIIYKLR---SMPPRETLGIEKN 79 (85)
T ss_dssp ECCHHHHHHHHHHHHHSSCTTTCEEEEEEES---SCCCCCCCSSCSS
T ss_pred ECCHHHHHHHHHHHHHhcCCCCCEEEEEECC---CcceEEEECCCCC
Confidence 4667789999999999999998999999987 5688999998764
No 2
>3uyx_A Hemagglutinin; influenza virus, subunit vaccine, viral; 1.80A {Influenza a virus} PDB: 3uyw_A 3mlh_A
Probab=70.86 E-value=2 Score=37.34 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=33.3
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-.+-|-|+=.|++.-+.+ .=-|+| ||+|||..|.
T Consensus 16 GnP~Cd~ll~~~~WsyivEr~~~~ng--------~CYPg~~~d~eeLR~lls 59 (214)
T 3uyx_A 16 GNPECESLSTASSWSYIVETPSSDNG--------TCYPGDFIDYEELREQLS 59 (214)
T ss_dssp TCTTSCCCTTCCCBSCEECCCCTTTT--------CSSCCCBTTHHHHHHHTS
T ss_pred cCccccccCCCCceeEEEECCCCCCC--------cCcCCccCCHHHHHHHHh
Confidence 89999999999999999999765554 112333 7999998886
No 3
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=53.14 E-value=13 Score=27.12 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=34.8
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
++...++++|++||++..-|+.=.|.+++-+= +.|++|.++.
T Consensus 40 ~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~-----~~~~~G~~~~ 81 (90)
T 1zpw_X 40 YLDERLLEDLRRRARRLLDLGQDALRIYPVAG-----QVEVLGVGPL 81 (90)
T ss_dssp EECHHHHHHHHHHHHHHCCTTTCEEEEEECCS-----CCCCCSSSCC
T ss_pred EcCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC-----cEEEECCCCC
Confidence 45566899999999999999888899988532 9999998764
No 4
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=48.79 E-value=18 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=37.7
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
+|.+.++++|++||++..-|+-=-|.+++-+=. -..+.|++|-++.
T Consensus 46 ~lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~~~-~~~~~~~iG~~~~ 91 (100)
T 4es1_A 46 IVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNN-YKTKVEHIGAKPS 91 (100)
T ss_dssp EECHHHHHHHHHHHHHHSCTTTCEEEEEEECCC-SSCCCCCCSCCCC
T ss_pred EcCHHHHHHHHHHHHhhcCCCCCEEEEEEcCCC-ccceEEEECCCCC
Confidence 366778999999999999898888999987533 3578999998764
No 5
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=46.04 E-value=15 Score=27.49 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=35.0
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
++.+..+++|++||++..=|+.=.|.+++-+=.| ..++|++|-++.
T Consensus 49 ~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~~~-~~~~~~~G~~~~ 94 (103)
T 3oq2_A 49 VVDPAQWAKLKHRLLSEMDKEKDCLRFYYLGANW-RNKVEHVGAKPA 94 (103)
T ss_dssp EECHHHHHHHHHHHHHHSCTTTCEEEEEEEETTG-GGGEEEEESCCS
T ss_pred EcCHHHHHHHHHHHHHhcCCCCCEEEEEEeCccc-cceEEEECCCCC
Confidence 3667789999999999995554557777764333 789999998765
No 6
>4i78_A Hemagglutinin HA1; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=42.35 E-value=8.3 Score=35.41 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=32.6
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-.+.|-|.=+|+..-+-+ .=-|+| ||+|||..|.
T Consensus 67 GnP~CD~ll~~~~WsyIVEr~~a~ng--------~CYPG~~~n~eeLR~l~s 110 (328)
T 4i78_A 67 GNPNCDNLLEAEEWSYIKINENAPDD--------LCFPGNFENLQDLLLEMS 110 (328)
T ss_dssp TCGGGCCSCCCCCBSSEEECSSCSBS--------CSSCEEETTHHHHHHHTS
T ss_pred cCcchhcccCcceeeEEEEcCCCCCC--------cccCCccCCHHHHHHHHh
Confidence 89999999999999999998765543 112333 7999999886
No 7
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=41.63 E-value=5.5 Score=32.60 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred cccCCCCCCCccchhhhhhccccchhhhhcC-Cc-cccCCcccCCcchh
Q 027172 136 TSRKCGNPNCKGLKKAAEFDIQLETEECVKN-KD-SAKKGLFELPRDHH 182 (227)
Q Consensus 136 ~sRKCgnP~CKGLkKA~EFDIQLeTEeCVk~-~~-~~k~gl~eLp~d~h 182 (227)
+.|.|.+|.|.|. |++.|-.. .+ ....+.+|-|+.||
T Consensus 239 r~r~c~~~~c~~~----------~~~~C~~~~Cp~~~~~~~~~~~~~~~ 277 (281)
T 4hqf_A 239 RKREILHEGCTSE----------LQEQCEEERCLPKREPLDVPDEPHHH 277 (281)
T ss_dssp -------------------------------------------------
T ss_pred EEEecCCCCCCCC----------eeeeeCCCCCcCCCCCCCCCCCCccc
Confidence 4788999999986 56667554 11 13334466665544
No 8
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=41.17 E-value=23 Score=23.30 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHH
Q 027172 71 LIAVITACGFLLFPYIRVVSV 91 (227)
Q Consensus 71 LiaVl~a~~FLl~pY~~~i~~ 91 (227)
++.++.-.+||+.+|++-...
T Consensus 12 ~Lfi~iPt~FLlilYvqT~s~ 32 (36)
T 3arc_M 12 ALFVLVPSVFLIILYVQTESQ 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhheeccc
Confidence 455666778999999986543
No 9
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein, protein-immune system complex; HET: NAG SIA GAL; 2.00A {Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A* 3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 3gbn_A* 3lzf_A* 3r2x_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H* 1ruz_H* 3hto_A* 3htp_A* 3htq_A* ...
Probab=41.12 E-value=15 Score=33.81 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCc--chhHHHHHHH
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPR--DHHRELQAEL 189 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~--d~hreLeAEL 189 (227)
|||.|-+|-.+.|.|+=+|+..-+.+ .=-|+ +||+|||+=|
T Consensus 65 GnP~Cd~~l~~~~WsyivEr~~~~ng--------~CYPg~~~d~eeLR~l~ 107 (329)
T 3ubq_A 65 GNPECESLSTASSWSYIVETPSSDNG--------TCYPGDFIDYEELREQL 107 (329)
T ss_dssp TCTTSCTTTSCSCBSSEEECTTCCBS--------CSSCCCBTTHHHHHHHH
T ss_pred cCCcccccCCCCceEEEEECCCCCCC--------cccCCccCCHHHHHHHH
Confidence 79999999999999999999866554 11233 2799999876
No 10
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=39.83 E-value=12 Score=33.60 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.0
Q ss_pred CcccCCcchhHHHHHHHhhcCCCCC
Q 027172 173 GLFELPRDHHRELQAELKKMAPPNG 197 (227)
Q Consensus 173 gl~eLp~d~hreLeAELrKMAPPNG 197 (227)
++..| ..+..+||+||.|+-||.|
T Consensus 296 ~~~~l-~~~~~~l~~~l~~~~~p~~ 319 (323)
T 3ceg_A 296 HAAAL-KRHTAQLREELLKLPCPEG 319 (323)
T ss_dssp HHHHH-HHHHHHHHHHHHHCCCCST
T ss_pred HHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 33455 6689999999999999988
No 11
>4fqi_A Hemagglutinin HA1; neutralizing antibodies, antibody affinity, antigens, epitop glycosylation, hemagglutinin glycoproteins; HET: NAG; 1.71A {Influenza a virus} PDB: 2fk0_A* 3gbm_A* 3fku_A* 2ibx_A* 3s13_A* 3s12_A* 3s11_A*
Probab=38.24 E-value=12 Score=34.40 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=33.0
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-...|.|.=+|+..-+.+ .=-|+| ||+|||+-|.
T Consensus 67 GnP~Cd~~l~~~~WsyIvEr~~~~ng--------~CYPG~~~d~eeLR~lls 110 (334)
T 4fqi_A 67 GNPMCDEFINVPEWSYIVEKANPVND--------LCYPGDFNDYEELKHLLS 110 (334)
T ss_dssp TCGGGGGGSSCCCCSCEEECSSCSBS--------CSSCEEETTHHHHHHHHT
T ss_pred cCchhhccCCCCceeEEEecCCCCCC--------cccCCccCCHHHHHHHHh
Confidence 89999999999999999998766555 122333 7999998764
No 12
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=38.18 E-value=17 Score=33.22 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=32.7
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCc--chhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPR--DHHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~--d~hreLeAELr 190 (227)
|||.|-+|-.+.|.|+=+|+..-+.+ .=-|+ +||+|||+=|.
T Consensus 63 GnP~CD~ll~~~~WsyiVEr~~~~ng--------~CYPG~~~d~eeLR~l~s 106 (319)
T 1jsd_A 63 GNPSCDLLLGGREWSYIVERPSAVNG--------MCYPGNVENLEELRSLFS 106 (319)
T ss_dssp TCTTCGGGTTCEECSSEEECTTCCBS--------CCSSCCBTTHHHHHHHHH
T ss_pred cCccccccCCCCceEEEEeCCCCCCC--------cccCcccCCHHHHHHHHh
Confidence 79999999999999999998776554 11233 27999998763
No 13
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=35.26 E-value=20 Score=26.48 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=31.6
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
++.+.++++|++||++..-|+.=.|.+++-+=.| ..+.|++|..+.
T Consensus 41 ~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~~~-~~~~~~iG~~~~ 86 (91)
T 3exc_X 41 DMDSQRMKDLVRVVKLIVDTNTDIVHIIPLGIRD-WERRIVIGREGL 86 (91)
T ss_dssp ECC--CHHHHHHHHHHHSCTTTCEEEEEEECHHH-HHTCCCCCC---
T ss_pred ECCHHHHHHHHHHHHHhcCCCCCEEEEEEeCchh-hceEEEECCCCC
Confidence 3667789999999999996666677777653333 688999996654
No 14
>4gxx_A Hemagglutinin HA1 chain; viral fusion protein, virus attachment and entry, viral PROT; HET: NAG BMA MAN; 1.80A {Influenza a virus} PDB: 3gbn_A* 3lzf_A* 3r2x_A* 4eef_A* 4gxu_A* 1rd8_A* 2wrg_H* 1ruz_H* 1rv0_H* 1rvt_H* 1ruy_H* 3hto_A* 3htp_A* 3htq_A* 3htt_A* 2wrh_H* 3m6s_A* 4f3z_A* 3lzg_A* 3al4_A* ...
Probab=32.64 E-value=22 Score=32.73 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=32.2
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-.+-|.|.=+|+..-+-+ .=-|+| ||+|||.-|.
T Consensus 67 GnP~CD~~l~~~~WsyIVEr~~a~ng--------~CYPG~~~d~eeLR~lls 110 (331)
T 4gxx_A 67 GNPECDLLLTASSWSYIVETSNSENG--------TCYPGDFIDYEELREQLS 110 (331)
T ss_dssp TCGGGGGGTTCCBCSSEEECTTCCBS--------CSSCSCBTTHHHHHHHHT
T ss_pred cCcchhcccCCceeEEEEEcCCCCCC--------CCCCCccCCHHHHHHHHh
Confidence 79999999988999999998776543 112322 7999998876
No 15
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=32.14 E-value=74 Score=27.19 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhhhhhHH--HHHHHHhhhhhhhhhh--hh---hcccccchhH--HHHHHHHHHHHHHHHHHHhh
Q 027172 70 ILIAVITACGFLLFPYI--RVVSVKSVEVSAAVFY--LV---KEEVIGNPLI--YSSIGVSMSCVAIATWVALL 134 (227)
Q Consensus 70 ILiaVl~a~~FLl~pY~--~~i~~~~~~~~~~i~~--l~---~~~~~~~P~~--y~~~~~~~~~aa~~~w~~~~ 134 (227)
+||.++.-++|.+-|-. .=+...+.-+++.+.+ ++ -|.++..|++ |+.+.+..++++++-..++.
T Consensus 225 ~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~ 298 (347)
T 3rhw_A 225 CMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVN 298 (347)
T ss_dssp HHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788877642 2233333333333222 11 3445667765 44444444455554444443
No 16
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=32.03 E-value=7.9 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=26.2
Q ss_pred ccchhhhhhccccchhhhhcCCccccCCcccCCcchhHHHHHHHhhcCCC
Q 027172 146 KGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPP 195 (227)
Q Consensus 146 KGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d~hreLeAELrKMAPP 195 (227)
+-|+||.+|| .++-++|. -|+|+-|-.+|+|-+--
T Consensus 21 ~sl~Ka~dfD--------------sWGQvvEA-~deY~~La~~lkk~~~s 55 (128)
T 1ug7_A 21 ASLRRGADFD--------------SWGQLVEA-IDEYQILARHLQKEAQA 55 (128)
T ss_dssp HHHHHHHHHH--------------HHTCHHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCC--------------cHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4589999998 45556666 67899998888886533
No 17
>3eyk_A Hemagglutinin HA1 chain; inhibitor, envelope protein, fusion protein, glycoprotein, lipoprotein, membrane, palmitate, transmembrane, virion; HET: EYK; 2.50A {Influenza a virus} SCOP: b.19.1.2 PDB: 3eyj_A*
Probab=30.20 E-value=22 Score=32.58 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=30.3
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+| ...|.|+=+|+..-+ + . =-|+| ||+|||.-|.
T Consensus 64 GnP~Cd~~-~~~~WsyIVEr~~a~-g--~------CYPG~~~d~eeLR~l~s 105 (323)
T 3eyk_A 64 GSPGCDRL-QDTTWDVFIERPTAV-D--T------CYPFDVPDYQSLRSILA 105 (323)
T ss_dssp TCGGGGGG-TTCBCSEEEECTTCC-C--C------SSCEECTTHHHHHHHHH
T ss_pred cCCccccC-CCceEEEEEECCCCC-C--c------cCCCccCCHHHHHHHHh
Confidence 89999999 569999999988765 2 1 22332 7999998776
No 18
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=29.44 E-value=34 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 027172 54 PACDRSRFRSAAVDVVILIAVITACGFLLFPYIRVV 89 (227)
Q Consensus 54 ~~C~hS~~psA~vD~lILiaVl~a~~FLl~pY~~~i 89 (227)
+.-||| |...+|-+++.+..++|+|-|+---..|+
T Consensus 4 ~i~dhs-pttgvvtv~viliavaalg~li~gcwcyl 38 (90)
T 1zza_A 4 SIMDHS-PTTGVVTVIVILIAIAALGALILGCWCYL 38 (90)
T ss_dssp SSCTTT-THHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeeccC-CCcceEEehhHHHHHHHHHHHHHHHHHHH
Confidence 345899 33455666555566778887776555554
No 19
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=29.32 E-value=21 Score=32.77 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=32.3
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-.+.|.|.=+|+..-+-+ .=-|+| ||+|||.-|.
T Consensus 65 GnP~CD~~l~~~~WsyIVEr~~a~ng--------~CYPG~~~d~eeLR~l~s 108 (327)
T 3ku3_A 65 GNPECDRLLSVPEWSYIMEKENPRDG--------LCYPGSFNDYEELKHLLS 108 (327)
T ss_dssp TCGGGGGGSSCCCCSCEEECSSCSBS--------CSSCEEETTHHHHHHHHT
T ss_pred cCcchhccCCCceeEEEEEcCCCCCC--------cccCCccCCHHHHHHHHh
Confidence 79999999999999999998765543 112333 7999998776
No 20
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=28.67 E-value=15 Score=22.82 Aligned_cols=9 Identities=44% Similarity=1.309 Sum_probs=7.1
Q ss_pred eeccCCCcc
Q 027172 203 FRARCGCSV 211 (227)
Q Consensus 203 FRArCGCpv 211 (227)
+-.+|||||
T Consensus 4 cnd~cGCpv 12 (26)
T 2l61_A 4 CDDKCGCAV 12 (26)
T ss_dssp CCGGGSSCS
T ss_pred ccCCCCCcc
Confidence 446899997
No 21
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=27.39 E-value=16 Score=23.64 Aligned_cols=13 Identities=15% Similarity=0.274 Sum_probs=11.2
Q ss_pred cccCCCCCCCccc
Q 027172 136 TSRKCGNPNCKGL 148 (227)
Q Consensus 136 ~sRKCgnP~CKGL 148 (227)
|.|.|.+|.|.|.
T Consensus 25 R~r~C~~~~C~g~ 37 (49)
T 2bbx_A 25 RKREILHEGCTSE 37 (49)
T ss_dssp EECCCSSTTSCCE
T ss_pred EEeeeCCCCCCCC
Confidence 5888999999984
No 22
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=24.31 E-value=86 Score=19.38 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=5.1
Q ss_pred HHHHHHhhhcc
Q 027172 127 IATWVALLCTS 137 (227)
Q Consensus 127 ~~~w~~~~c~s 137 (227)
++.+.++.|+.
T Consensus 29 iv~~~~~~~rR 39 (41)
T 2k9y_A 29 LAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHSSSSS
T ss_pred HHHHheeEeee
Confidence 34444455553
No 23
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.00 E-value=93 Score=19.77 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHH
Q 027172 64 AAVDVVILIAVITACGFLLFPYIR 87 (227)
Q Consensus 64 A~vD~lILiaVl~a~~FLl~pY~~ 87 (227)
.++.-++-++...|.||-+|-|++
T Consensus 7 eviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666677788998888864
No 24
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.91 E-value=14 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=25.3
Q ss_pred cchhhhh--hccccchhhhhcCCccccCCcccCCcchhHHHH
Q 027172 147 GLKKAAE--FDIQLETEECVKNKDSAKKGLFELPRDHHRELQ 186 (227)
Q Consensus 147 GLkKA~E--FDIQLeTEeCVk~~~~~k~gl~eLp~d~hreLe 186 (227)
-.|+|+| ||++.+.=.-..-.+++|+.++.|.+| |..|+
T Consensus 38 qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~-~~a~d 78 (86)
T 3j21_T 38 DIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPE-YSASE 78 (86)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTT-SCHHH
T ss_pred HHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCC-CcHHH
Confidence 4677877 777654332222345799999999655 77665
No 25
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=21.43 E-value=9.8 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=13.0
Q ss_pred HhhcCCCCCcEEEEee
Q 027172 189 LKKMAPPNGRAVLVFR 204 (227)
Q Consensus 189 LrKMAPPNGRAVLvFR 204 (227)
+.+|+-+|||.||--|
T Consensus 15 raRm~T~~GRkvl~rR 30 (38)
T 2ftc_Q 15 VRRLSTPAGVQVILRR 30 (38)
T ss_pred HHHccChhhHHHHHHH
Confidence 4689999999998544
No 26
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.34 E-value=16 Score=30.08 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=27.4
Q ss_pred ccchhhhh--hccccchhhhhcCCccccCCcccCCcchhHHHH
Q 027172 146 KGLKKAAE--FDIQLETEECVKNKDSAKKGLFELPRDHHRELQ 186 (227)
Q Consensus 146 KGLkKA~E--FDIQLeTEeCVk~~~~~k~gl~eLp~d~hreLe 186 (227)
--.|+|+| ||++.+.=.=..-.+|+|+.++.|.+| |+.|+
T Consensus 101 ~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~-~dAld 142 (150)
T 4a17_R 101 PQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAAD-SDSLT 142 (150)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSS-SCHHH
T ss_pred HHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCC-CcHHH
Confidence 35788887 787765433333346799999999665 87776
No 27
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.11 E-value=79 Score=24.04 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.7
Q ss_pred HHHHhhcCCCCCcEEEEeeccCCCccccccccCCcccc
Q 027172 186 QAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQR 223 (227)
Q Consensus 186 eAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~r 223 (227)
...|+.-..-.|.+|+.-|||=| .+|||+.|.+.-
T Consensus 53 ~~Di~~i~~f~~qtviaIkAP~g---T~LeVpdp~~~y 87 (106)
T 2aze_B 53 CQDLRSIADPAEQMVMVIKAPPE---TQLQAVDSSENF 87 (106)
T ss_dssp HHHHHTTSCTTTEEEEEEECCTT---CEEEEEECSSCE
T ss_pred HHHHhcCcCCCcCeEEEEECCCC---CeeeeCCCCcce
Confidence 34677777889999999999966 599999998643
No 28
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.05 E-value=16 Score=29.78 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.1
Q ss_pred ccchhhhh--hccccchhhhhcCCccccCCcccCCcchhHHHH
Q 027172 146 KGLKKAAE--FDIQLETEECVKNKDSAKKGLFELPRDHHRELQ 186 (227)
Q Consensus 146 KGLkKA~E--FDIQLeTEeCVk~~~~~k~gl~eLp~d~hreLe 186 (227)
--.|+|+| ||++.+.=.=..-.+++|+.++.|..| |+.|+
T Consensus 93 ~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~-~dald 134 (142)
T 3u5e_X 93 YQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTAD-YDALD 134 (142)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTT-CCHHH
T ss_pred HHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCC-CcHHH
Confidence 35788887 787765433333346799999999655 77775
No 29
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=20.60 E-value=33 Score=35.82 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCcc-ccCCcccCCcchhHHHHHHHhhcCCC
Q 027172 166 NKDS-AKKGLFELPRDHHRELQAELKKMAPP 195 (227)
Q Consensus 166 ~~~~-~k~gl~eLp~d~hreLeAELrKMAPP 195 (227)
.+++ |++| ..||+++.++++.||-.|||-
T Consensus 855 ~~~~t~kk~-e~Lsqk~~~~I~~eLs~laPi 884 (1118)
T 3q23_A 855 AKDPTWKKG-DFLTQKELNDIQASLNNLAPM 884 (1118)
T ss_dssp TTCTTCCTT-CCCBHHHHHHHHHTTGGGCCC
T ss_pred hcccccCcc-ccccHHHHHHHHHHHHhcccc
Confidence 3455 7777 689999999999999999993
No 30
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=20.24 E-value=1e+02 Score=22.61 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=29.7
Q ss_pred hhhhhhccccc-hhhhhcCCccccCCcccCCcchhHHHHHHHhhcCCCCCc
Q 027172 149 KKAAEFDIQLE-TEECVKNKDSAKKGLFELPRDHHRELQAELKKMAPPNGR 198 (227)
Q Consensus 149 kKA~EFDIQLe-TEeCVk~~~~~k~gl~eLp~d~hreLeAELrKMAPPNGR 198 (227)
.||..+.|||- |.-|.++.++.... +. ++-+-.|+|+||. ||+
T Consensus 16 ekalA~~LqLPpTFFC~~~~p~~tse--~~--~~~edfetavrkl---ng~ 59 (67)
T 3uip_D 16 EKAKADTLKLPPTFFCYKNRPDYVSE--EE--EDDEDFETAVKKL---NGK 59 (67)
T ss_dssp HHHHHHHTTCCTTGGGGGSSTTCCCC--CC--CCCCCHHHHHHTT---TTC
T ss_pred HHHHhhccCCCCcEEEEecCCCCccc--cc--cchHHHHHHHHHh---CCc
Confidence 58899999994 89999996553222 11 1234489999985 665
Done!