Query 027172
Match_columns 227
No_of_seqs 38 out of 40
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 09:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027172.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027172hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u58a2 d.19.1.1 (A:8-144) Imm 65.0 1 7.4E-05 35.0 1.2 12 182-193 63-74 (137)
2 d1zpwx1 d.58.58.1 (X:2-83) Hyp 61.2 3.1 0.00022 28.9 3.1 40 176-220 39-78 (82)
3 d1fcda2 c.3.1.5 (A:115-255) Fl 56.3 3.6 0.00026 29.9 2.9 36 180-216 18-54 (141)
4 d2i0xa1 d.58.58.1 (A:1-84) Hyp 54.0 7.2 0.00052 27.0 4.1 44 176-222 36-79 (84)
5 d1jsda_ b.19.1.2 (A:) Hemagglu 49.2 4.4 0.00032 34.9 2.7 42 141-190 63-106 (317)
6 d1rvxa_ b.19.1.2 (A:) Hemagglu 42.4 5.7 0.00041 34.3 2.3 42 141-190 63-106 (323)
7 d1pvza_ g.3.7.2 (A:) K+ toxin- 41.3 2.1 0.00015 25.9 -0.5 10 137-146 14-24 (31)
8 d1jsma_ b.19.1.2 (A:) Hemagglu 27.1 12 0.00088 32.2 1.9 42 141-190 63-106 (321)
9 d1oede_ f.36.1.1 (E:) Acetylch 26.7 43 0.0031 24.9 4.9 63 70-132 13-85 (260)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 22.9 22 0.0016 21.9 2.0 18 69-86 18-35 (37)
11 d1ug7a_ a.24.24.1 (A:) Domain 21.5 7.6 0.00055 29.7 -0.5 31 148-193 23-53 (128)
12 d2i6ga1 c.66.1.44 (A:1-198) Pu 20.7 19 0.0014 25.8 1.6 30 176-205 107-136 (198)
13 d1kpga_ c.66.1.18 (A:) CmaA1 { 20.0 35 0.0025 27.1 3.3 25 177-201 140-164 (285)
No 1
>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1 and alpha-2 domains {Murine cytomegalovirus [TaxId: 10366]}
Probab=65.05 E-value=1 Score=35.01 Aligned_cols=12 Identities=67% Similarity=0.819 Sum_probs=10.2
Q ss_pred hHHHHHHHhhcC
Q 027172 182 HRELQAELKKMA 193 (227)
Q Consensus 182 hreLeAELrKMA 193 (227)
-.||||||+||-
T Consensus 63 C~EL~aELdKm~ 74 (137)
T d1u58a2 63 CKELQAELDKMQ 74 (137)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhh
Confidence 358999999995
No 2
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=61.23 E-value=3.1 Score=28.88 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=32.3
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPK 220 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpK 220 (227)
+|...++++|..||+++.-++-=-|.+|+= | ++.|+||-.
T Consensus 39 ~lt~~~~~~l~~~l~~~i~~~~Dsv~i~~l-~----~~~~v~g~g 78 (82)
T d1zpwx1 39 YLDERLLEDLRRRARRLLDLGQDALRIYPV-A----GQVEVLGVG 78 (82)
T ss_dssp EECHHHHHHHHHHHHHHCCTTTCEEEEEEC-C----SCCCCCSSS
T ss_pred EcCHHHHHHHHHHHHHhcCCCCCEEEEEEc-C----CeEEEECCC
Confidence 366778999999999999888778999976 3 367899844
No 3
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=56.27 E-value=3.6 Score=29.87 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.2
Q ss_pred chhHHHHHHHhhcCCCCCcEEEEe-eccCCCccccccc
Q 027172 180 DHHRELQAELKKMAPPNGRAVLVF-RARCGCSVGRLEV 216 (227)
Q Consensus 180 d~hreLeAELrKMAPPNGRAVLvF-RArCGCpv~rLEv 216 (227)
.++.+|+.+|++| +.+|++|... ..|.-||.+-.|.
T Consensus 18 ~~~~~L~~~l~~~-~~Gg~vv~t~p~~P~kCpgAP~e~ 54 (141)
T d1fcda2 18 EQTAILRKQLEDM-ADGGTVVIAPPAAPFRCPPGPYER 54 (141)
T ss_dssp HHHHHHHHHHHHS-CTTCCEEEECCCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHhc-ccCCeEEEecCCCCccCCchHHHH
Confidence 3589999999997 5588997654 4569999886664
No 4
>d2i0xa1 d.58.58.1 (A:1-84) Hypothetical protein PF1117 {Pyrococcus furiosus [TaxId: 2261]}
Probab=54.01 E-value=7.2 Score=26.99 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=35.7
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeeccCCCccccccccCCccc
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGPKKQ 222 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRArCGCpv~rLEvwGpKK~ 222 (227)
+|++.++++|++||+++.-|+-=-|.+|+=+ +....|++|-.|.
T Consensus 36 ~l~~~~~~~l~~~l~~~i~~~~Dsv~iy~l~---~~~~~~v~G~~~~ 79 (84)
T d2i0xa1 36 EVTLAEFERIKEGLKKIIDENSDSVIIYKLR---SMPPRETLGIEKN 79 (84)
T ss_dssp ECCHHHHHHHHHHHHHSSCTTTCEEEEEEES---SCCCCCCCSSCSS
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcC---CCCeeEEECcCCC
Confidence 4778899999999999998877889999873 3446799997664
No 5
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=49.15 E-value=4.4 Score=34.90 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-++-...|+|+=.|+..-+.+ + =-|+| ||+|||.=|.
T Consensus 63 GnP~CD~~l~~~~WsyivErp~a~ng-------~-CYPg~~~d~eeLR~l~s 106 (317)
T d1jsda_ 63 GNPSCDLLLGGREWSYIVERPSAVNG-------M-CYPGNVENLEELRSLFS 106 (317)
T ss_dssp TCTTCGGGTTCEECSSEEECTTCCBS-------C-CSSCCBTTHHHHHHHHH
T ss_pred cCcchhccCCcCceEEEEecCCcCCC-------c-ccccccCCHHHHHHHHh
Confidence 89999999999999999998754443 0 11222 7999998664
No 6
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=42.36 E-value=5.7 Score=34.29 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=31.8
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCcc--hhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPRD--HHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d--~hreLeAELr 190 (227)
|||.|-+|-.+.|.|+=+|+..-..+ + =-|+| ||+|||+-|.
T Consensus 63 GnP~CD~~l~~~~WsyivEr~na~ng-------~-CYPg~~~d~eeLR~lls 106 (323)
T d1rvxa_ 63 GNPECDPLLPVRSWSYIVETPNSENG-------I-CYPGDFIDYEELREQLS 106 (323)
T ss_dssp TCGGGGGGTTCCBCSSEEECTTCCBS-------C-SSSSCBTTHHHHHHHHT
T ss_pred cCccccccCCccceeEEEecCCccCC-------c-ccCCccCCHHHHHHHHh
Confidence 89999999999999999998754433 1 12233 7999997663
No 7
>d1pvza_ g.3.7.2 (A:) K+ toxin-like peptide Bmp07 (BmKK2) {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=41.34 E-value=2.1 Score=25.88 Aligned_cols=10 Identities=80% Similarity=1.760 Sum_probs=8.4
Q ss_pred ccCC-CCCCCc
Q 027172 137 SRKC-GNPNCK 146 (227)
Q Consensus 137 sRKC-gnP~CK 146 (227)
+||| |||.||
T Consensus 14 ~rkcpgnp~cr 24 (31)
T d1pvza_ 14 SRKCPGNPPCR 24 (31)
T ss_dssp HHHSSSCCCEE
T ss_pred hhcCCCCCccc
Confidence 6888 899997
No 8
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=27.13 E-value=12 Score=32.16 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=32.2
Q ss_pred CCCCCccchhhhhhccccchhhhhcCCccccCCcccCCc--chhHHHHHHHh
Q 027172 141 GNPNCKGLKKAAEFDIQLETEECVKNKDSAKKGLFELPR--DHHRELQAELK 190 (227)
Q Consensus 141 gnP~CKGLkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~--d~hreLeAELr 190 (227)
|||.|-+|-...|.|.=+|+..-+.+ .=-|+ +||+|||.=+.
T Consensus 63 GnP~Cd~~l~~~~WsyivEr~~~~ng--------~CYPg~~~d~eeLR~l~s 106 (321)
T d1jsma_ 63 GNPMCDEFLNVPEWSYIVEKDNPVNG--------LCYPENFNDYEELKHLLS 106 (321)
T ss_dssp TCGGGGGGTTCCCCSCEEECSSCSBS--------CSSCEEETTHHHHHHHHT
T ss_pred cCcchhccCCccceeEEEecCCCCCC--------cccCcccCCHHHHHHHHh
Confidence 89999999999999999998766554 11233 27999998664
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=26.65 E-value=43 Score=24.94 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhhhhHH--HHHHHHhhhhhhhhhh--hhhcc---cc-cchhH--HHHHHHHHHHHHHHHHHH
Q 027172 70 ILIAVITACGFLLFPYI--RVVSVKSVEVSAAVFY--LVKEE---VI-GNPLI--YSSIGVSMSCVAIATWVA 132 (227)
Q Consensus 70 ILiaVl~a~~FLl~pY~--~~i~~~~~~~~~~i~~--l~~~~---~~-~~P~~--y~~~~~~~~~aa~~~w~~ 132 (227)
+||.++.-++|.+=|-- .=+...+.-+++.+.+ ++.+. .+ ..|++ |+.+-+..++++++.+.+
T Consensus 13 ~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl~~t~i 85 (260)
T d1oede_ 13 VLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVMNCVI 85 (260)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888887743 2333333333333332 22222 22 44654 554444444444444433
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.90 E-value=22 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhhhhHH
Q 027172 69 VILIAVITACGFLLFPYI 86 (227)
Q Consensus 69 lILiaVl~a~~FLl~pY~ 86 (227)
-.=++.+|-+|.|+++|+
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555667788888886
No 11
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.49 E-value=7.6 Score=29.70 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=24.8
Q ss_pred chhhhhhccccchhhhhcCCccccCCcccCCcchhHHHHHHHhhcC
Q 027172 148 LKKAAEFDIQLETEECVKNKDSAKKGLFELPRDHHRELQAELKKMA 193 (227)
Q Consensus 148 LkKA~EFDIQLeTEeCVk~~~~~k~gl~eLp~d~hreLeAELrKMA 193 (227)
|||+..|| .++-++|. -|+|.-|..||+|-+
T Consensus 23 ~~kgtdFD--------------SWGQLVEA-~dEYq~lar~L~k~~ 53 (128)
T d1ug7a_ 23 LRRGADFD--------------SWGQLVEA-IDEYQILARHLQKEA 53 (128)
T ss_dssp HHHHHHHH--------------HHTCHHHH-HHHHHHHHHHHHHHH
T ss_pred HhccCCcc--------------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 67788887 46667787 789999999999854
No 12
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}
Probab=20.66 E-value=19 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=25.6
Q ss_pred cCCcchhHHHHHHHhhcCCCCCcEEEEeec
Q 027172 176 ELPRDHHRELQAELKKMAPPNGRAVLVFRA 205 (227)
Q Consensus 176 eLp~d~hreLeAELrKMAPPNGRAVLvFRA 205 (227)
-+|+++...+-+|+.++..|+|+-++....
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 467777888999999999999999987654
No 13
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.01 E-value=35 Score=27.08 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCcchhHHHHHHHhhcCCCCCcEEE
Q 027172 177 LPRDHHRELQAELKKMAPPNGRAVL 201 (227)
Q Consensus 177 Lp~d~hreLeAELrKMAPPNGRAVL 201 (227)
+..+.|+.+=.|..+..+|+||.||
T Consensus 140 ~~~~~~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 140 FGHERYDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp TCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred cCchhHHHHHHHHHhhcCCCCcEEE
Confidence 5445688899999999999999997
Done!