Query 027173
Match_columns 227
No_of_seqs 161 out of 1379
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.4E-46 4.7E-51 326.9 18.9 209 4-227 10-220 (306)
2 2w96_A G1/S-specific cyclin-D1 100.0 2E-44 7E-49 308.3 18.5 202 11-227 4-206 (271)
3 1f5q_B Gamma herpesvirus cycli 100.0 1.6E-44 5.5E-49 305.8 12.2 178 40-227 21-198 (252)
4 2f2c_A Cyclin homolog, V-cycli 100.0 3.2E-43 1.1E-47 298.3 18.3 181 41-227 21-201 (254)
5 1g3n_C V-cyclin; cyclin-depend 100.0 6.7E-43 2.3E-47 296.8 18.8 182 40-227 19-200 (257)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 1.3E-41 4.4E-46 289.3 19.0 183 36-227 3-186 (260)
7 1w98_B Cyclin E, G1/S-specific 100.0 4.8E-41 1.6E-45 289.1 19.6 184 38-227 16-207 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 3.8E-41 1.3E-45 287.8 15.8 180 37-227 4-183 (269)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.3E-32 4.4E-37 233.2 11.2 156 68-227 35-200 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 1.2E-30 4.2E-35 221.1 15.8 151 69-227 26-192 (257)
11 1zp2_A RNA polymerase II holoe 100.0 2.3E-29 7.8E-34 210.7 15.4 145 74-227 28-179 (235)
12 3rgf_B Cyclin-C; protein kinas 100.0 2.3E-29 7.8E-34 216.5 15.7 150 71-227 40-202 (285)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 9E-30 3.1E-34 225.3 12.5 151 69-227 33-199 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 1.1E-27 3.9E-32 209.2 14.3 152 71-227 54-215 (323)
15 1c9b_A General transcription f 99.9 1.9E-21 6.7E-26 159.4 14.5 144 73-227 4-147 (207)
16 1ais_B TFB TFIIB, protein (tra 99.7 2.8E-17 9.7E-22 133.8 13.4 145 72-227 7-153 (200)
17 3k7a_M Transcription initiatio 99.5 3.6E-14 1.2E-18 124.8 6.3 143 74-227 126-280 (345)
18 4bbr_M Transcription initiatio 98.9 4.4E-09 1.5E-13 92.3 9.8 142 75-227 127-280 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.8 3.8E-08 1.3E-12 83.7 12.3 109 76-188 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.6 0.019 6.4E-07 45.6 10.4 89 79-174 110-198 (200)
21 1c9b_A General transcription f 94.7 0.21 7.3E-06 39.6 9.5 86 78-170 103-188 (207)
22 1zp2_A RNA polymerase II holoe 89.5 0.62 2.1E-05 37.7 5.9 82 80-169 137-218 (235)
23 2ivx_A Cyclin-T2; transcriptio 89.2 2.2 7.4E-05 34.8 9.1 87 79-169 148-238 (257)
24 2i53_A Cyclin K; cell cycle, t 88.1 1.8 6.1E-05 35.3 7.9 88 79-170 153-250 (258)
25 3rgf_B Cyclin-C; protein kinas 85.8 2.5 8.6E-05 35.2 7.6 83 79-170 159-241 (285)
26 1g3n_C V-cyclin; cyclin-depend 84.5 6.7 0.00023 31.9 9.5 87 78-169 152-246 (257)
27 2f2c_A Cyclin homolog, V-cycli 83.5 7 0.00024 31.7 9.2 85 79-169 154-246 (254)
28 3h4c_A Transcription factor TF 80.3 12 0.0004 30.0 8.9 92 75-171 13-104 (260)
29 2pk2_A Cyclin-T1, protein TAT; 79.9 3.2 0.00011 35.9 6.1 87 80-170 156-246 (358)
30 2cch_B Cyclin A2, cyclin-A; co 79.3 5.4 0.00019 32.5 7.1 85 78-169 140-226 (260)
31 3g33_B CCND3 protein; Ser/Thr 76.2 13 0.00045 31.1 8.8 73 96-173 194-269 (306)
32 2b9r_A Human cyclin B1; cell c 74.9 4.1 0.00014 33.6 5.1 81 79-166 140-220 (269)
33 3k7a_M Transcription initiatio 73.5 0.69 2.3E-05 39.9 0.0 55 79-136 237-291 (345)
34 2w96_A G1/S-specific cyclin-D1 72.4 12 0.00041 30.6 7.5 90 79-173 159-259 (271)
35 1jkw_A Cyclin H; cell cycle, c 67.6 18 0.00061 30.6 7.7 106 77-188 167-276 (323)
36 4bbr_M Transcription initiatio 66.9 1.2 4E-05 38.5 0.0 57 77-136 235-291 (345)
37 1w98_B Cyclin E, G1/S-specific 44.1 1.3E+02 0.0043 24.6 8.9 57 98-168 183-239 (283)
38 3m03_A ORC6, origin recognitio 37.0 1E+02 0.0035 21.2 9.3 79 81-168 6-90 (95)
39 2qdj_A Retinoblastoma-associat 34.5 1.4E+02 0.0046 25.1 7.5 62 81-146 6-71 (304)
40 2p1m_A SKP1-like protein 1A; F 33.5 74 0.0025 23.7 5.3 38 120-159 112-149 (160)
41 3v7d_A Suppressor of kinetocho 33.1 67 0.0023 24.3 5.0 39 119-159 119-157 (169)
42 1f5q_B Gamma herpesvirus cycli 29.5 1.7E+02 0.0057 23.5 7.2 82 80-169 152-240 (252)
43 1fs1_B SKP1, cyclin A/CDK2-ass 29.1 80 0.0028 22.9 4.8 81 42-144 25-132 (141)
44 2wh0_Q Pkcev3, protein kinase 26.7 53 0.0018 17.1 2.3 18 155-172 12-29 (31)
45 1uhw_A Pleckstrin; three-helix 22.3 55 0.0019 23.1 2.5 31 75-106 41-71 (109)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=326.85 Aligned_cols=209 Identities=23% Similarity=0.363 Sum_probs=172.6
Q ss_pred CCCCCcccccccccc--ccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHH
Q 027173 4 TCSGSFPDLLCGEDS--GIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWI 81 (227)
Q Consensus 4 ~~~~~~~~l~c~e~~--~~~~~~~~p~~~~~d~~~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm 81 (227)
+.|+.+ +|+|+|+. .....+| |... +++|++++|+++|.++.|+++|++..| +++++.||.++++||
T Consensus 10 ~~~~~~-~l~~~e~~~~~~~a~~d-p~l~--------~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl 78 (306)
T 3g33_B 10 SPGGSM-ELLCCEGTRHAPRAGPD-PRLL--------GDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWM 78 (306)
T ss_dssp -------------------------------------CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHH
T ss_pred CCCCCc-ceeeecccccccccCCC-Cccc--------chHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHH
Confidence 346676 79999943 2555555 4433 788999999999999999999998655 469999999999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHH
Q 027173 82 LKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRM 161 (227)
Q Consensus 82 ~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~ 161 (227)
++|+.+|+++++|+++||+|||||+++..+.+. ++|++|+|||+||+|+||..+|.+.+++. .+++.|++++|++|
T Consensus 79 ~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~---~lqLv~~tcL~lAsK~eE~~p~~~~~l~~-~~~~~~~~~~i~~m 154 (306)
T 3g33_B 79 LEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA---QLQLLGAVCMLLASKLRETTPLTIEKLCI-YTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG---GHHHHHHHHHHHHHHHHCSSCCCTTHHHH-HTTTSSCHHHHHHH
T ss_pred HHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHH-HhccCccHHHHHHH
Confidence 999999999999999999999999999999887 89999999999999999999999999985 68889999999999
Q ss_pred HHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 162 ELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 162 E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
|+.||++|+|+++.|||++|+.+|++.++..+.....+...+.++++.++.++.|+.|+||+||+|
T Consensus 155 E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaA 220 (306)
T 3g33_B 155 EVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATG 220 (306)
T ss_dssp HHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHH
Confidence 999999999999999999999999999887765556677889999999999999999999999986
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2e-44 Score=308.28 Aligned_cols=202 Identities=23% Similarity=0.328 Sum_probs=174.0
Q ss_pred ccccccccc-cccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhC
Q 027173 11 DLLCGEDSG-IFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYN 89 (227)
Q Consensus 11 ~l~c~e~~~-~~~~~~~p~~~~~d~~~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~ 89 (227)
+|+|+|+.. ..+.++ |... ++|++++|+++|.++.|+++|+...| +++++.+|.++++||++++.+++
T Consensus 4 ~l~c~e~~~~~~~~~d-p~~~---------~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~ 72 (271)
T 2w96_A 4 QLLCCEVETIRRAYPD-ANLL---------NDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQK 72 (271)
T ss_dssp --CCCSSSCC---------------------CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeCCCCccccCCCC-Cccc---------HHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHC
Confidence 599999755 333333 3322 56899999999999999999997655 57999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHc
Q 027173 90 FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVL 169 (227)
Q Consensus 90 l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L 169 (227)
++++|+++|++|+|||++..++++. ++|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|
T Consensus 73 l~~~tl~lAv~~lDRfls~~~v~~~---~lqlv~~acL~iAsK~EE~~p~~~~~~~~-~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 73 CEEEVFPLAMNYLDRFLSLEPVKKS---RLQLLGATCMFVASKMKETIPLTAEKLCI-YTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp CCTTHHHHHHHHHHHHHTTSCCCTT---THHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTTSSCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhCCcCCcCHH---HHHHHHHHHHHHHHHHhhcCCCCHHHHHH-HhcCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999888 89999999999999999999999999985 6788999999999999999999
Q ss_pred CCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 170 DWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 170 ~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
+|++++|||++|+.+|++.++..+.....+...|.+++..++.|+.|+.|+||+||+|
T Consensus 149 ~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaA 206 (271)
T 2w96_A 149 KWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAG 206 (271)
T ss_dssp TTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHH
T ss_pred CCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHH
Confidence 9999999999999999999886654334455678899999999999999999999986
No 3
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-44 Score=305.76 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchh
Q 027173 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (227)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~l 119 (227)
.++++++|+++|.++.|. .. ++++++.||.++|+||++|+.+|+++++|+++||+|+|||++..++++. ++
T Consensus 21 ~d~i~~~l~~~E~~~~p~-----~~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~---~l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVGV-----NV-DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRE---NY 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSSS-----SH-HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGG---GH
T ss_pred HHHHHHHHHHHHHHhCcC-----cc-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHH---HH
Confidence 458999999999999881 22 3468999999999999999999999999999999999999999999888 89
Q ss_pred HHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHH
Q 027173 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (227)
Q Consensus 120 ql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i 199 (227)
||+|+|||+||+|+||..||.+.+++. .+++.|++++|++||+.||++|+|+++.|||++|+++|++.++..+.....+
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~~-~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~ 170 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLAY-LCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNI 170 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHH-HHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHH
Confidence 999999999999999999999999985 6889999999999999999999999999999999999999987665444457
Q ss_pred HHHHHHHHHHhhccccccccccchhccC
Q 027173 200 ISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 200 ~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
...|.++++.++.|+.|+.|+||++|+|
T Consensus 171 ~~~a~~~l~~~l~d~~~l~~~PS~iAaa 198 (252)
T 1f5q_B 171 YNLCRPKIFCALCDGRSAMKRPVLITLA 198 (252)
T ss_dssp HHHHHHHHHHHHHCHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhccCHHHHHHH
Confidence 7889999999999999999999999986
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=3.2e-43 Score=298.27 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhH
Q 027173 41 EESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120 (227)
Q Consensus 41 ~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lq 120 (227)
+|+++ |+++|.++.|+++|++.. ++++++.+|.++++||++|+.+|+++++|+++||+|+|||++...+++. ++|
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~lq 95 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKK---TLQ 95 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTT---THH
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHH---Hcc
Confidence 78999 999999999999999744 4679999999999999999999999999999999999999999999888 899
Q ss_pred HHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHH
Q 027173 121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLI 200 (227)
Q Consensus 121 l~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~ 200 (227)
++|+|||+||+|+||..||.+.+++. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.+....+.
T Consensus 96 Lv~~acl~iA~K~eE~~~p~~~d~~~-~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~ 174 (254)
T 2f2c_A 96 KIGAACVLIGSKIRTVKPMTVSKLTY-LSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLY 174 (254)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHST-TC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHH
Confidence 99999999999999999999999974 68889999999999999999999999999999999999999887665445567
Q ss_pred HHHHHHHHHhhccccccccccchhccC
Q 027173 201 SRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 201 ~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
..|.++++.++.|+.|+.|+||++|+|
T Consensus 175 ~~a~~ll~~~l~d~~~~~~~PS~iAaA 201 (254)
T 2f2c_A 175 EAASTTICKALIQPNIALLSPGLICAG 201 (254)
T ss_dssp HHHHHHHHHHTTSGGGTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhccCHHHHHHH
Confidence 789999999999999999999999986
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.7e-43 Score=296.75 Aligned_cols=182 Identities=23% Similarity=0.298 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchh
Q 027173 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (227)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~l 119 (227)
++|++ +|+++|.++.|+++|+... ++++++.+|.++++||++|+.+|+++++|+++||+|+|||++...+.+. ++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE---HF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---HH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHH---HH
Confidence 37888 9999999999999998644 4579999999999999999999999999999999999999999999888 89
Q ss_pred HHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHH
Q 027173 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (227)
Q Consensus 120 ql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i 199 (227)
|++|+|||+||+|+||..+|.+.+++. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++...+....+
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~~~-~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 172 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSLCY-AAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFW 172 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHH
Confidence 999999999999999999999999985 6788999999999999999999999999999999999999988776555556
Q ss_pred HHHHHHHHHHhhccccccccccchhccC
Q 027173 200 ISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 200 ~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
...|.++++.++.|+.|+.|+||++|+|
T Consensus 173 ~~~a~~~le~~l~d~~~~~~~PS~iAaA 200 (257)
T 1g3n_C 173 HHEVNTLITKALVDPLTGSLPASIISAA 200 (257)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhCcCHHHHHHH
Confidence 7789999999999999999999999986
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.3e-41 Score=289.32 Aligned_cols=183 Identities=25% Similarity=0.285 Sum_probs=171.0
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCC
Q 027173 36 SSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNN 115 (227)
Q Consensus 36 ~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~ 115 (227)
.++|.+|++..|+++|.++.|+++|++. ++++++.+|.++++||++++.+|+++++|+++|++|+|||++..++++.
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~- 79 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG- 79 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH-
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH-
Confidence 3579999999999999999999999997 7789999999999999999999999999999999999999999999888
Q ss_pred CchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCCh
Q 027173 116 GWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTF 195 (227)
Q Consensus 116 ~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~ 195 (227)
++|++|+|||+||+|+||..+|.+.+++. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++..+
T Consensus 80 --~lqlv~~acl~iA~K~ee~~~~~~~d~~~-i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~-- 154 (260)
T 2cch_B 80 --KLQLVGTAAMLLASKFEEIYPPEVAEFVY-ITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN-- 154 (260)
T ss_dssp --HHHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC--
T ss_pred --HHhHHHHHHHHHHHHhcccCCCCHHHHHH-HHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh--
Confidence 89999999999999999999999999985 6788999999999999999999999999999999999999887554
Q ss_pred HHHHHHHHHHHHHHhhcccc-ccccccchhccC
Q 027173 196 MGFLISRATKIILSNIQGEN-HQLLPVNATTRA 227 (227)
Q Consensus 196 ~~~i~~~a~~~l~~~l~d~~-fl~~~PS~~A~A 227 (227)
..+...|.++++.++.|+. |+.|+||++|+|
T Consensus 155 -~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaA 186 (260)
T 2cch_B 155 -CKVESLAMFLGELSLIDADPYLKYLPSVIAGA 186 (260)
T ss_dssp -HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHH
Confidence 2466778899999999999 999999999986
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.8e-41 Score=289.12 Aligned_cols=184 Identities=20% Similarity=0.338 Sum_probs=167.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhc-CccCCCCC
Q 027173 38 ASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYS-RRLPDNNG 116 (227)
Q Consensus 38 ~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~-~~i~~~~~ 116 (227)
+|++|++++|+++|.++.|+++|++. ++++++.+|.++++||++++.+++++++|+++|++|+|||++. ..+.+.
T Consensus 16 ~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~-- 91 (283)
T 1w98_B 16 ANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT-- 91 (283)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG--
T ss_pred cCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH--
Confidence 57889999999999999999999986 7789999999999999999999999999999999999999998 577776
Q ss_pred chhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCC---
Q 027173 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTG--- 193 (227)
Q Consensus 117 ~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~--- 193 (227)
++|++|+|||+||+|+||..+|.+++++. .+++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.++
T Consensus 92 -~lqlv~~acL~iA~K~eE~~~p~l~~~~~-i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~ 169 (283)
T 1w98_B 92 -LLQLIGISSLFIAAKLEEIYPPKLHQFAY-VTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHE 169 (283)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHH-TTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCC
T ss_pred -HHHHHHHHHHHHHHHhcccCCCcHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhh
Confidence 89999999999999999999999999985 6788999999999999999999999999999999999998775432
Q ss_pred ----ChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 194 ----TFMGFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 194 ----~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
.+.......+.++++.++.|+.|+.|+||++|+|
T Consensus 170 ~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaA 207 (283)
T 1w98_B 170 VLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAAS 207 (283)
T ss_dssp SSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHH
Confidence 1223444567788999999999999999999986
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.8e-41 Score=287.80 Aligned_cols=180 Identities=21% Similarity=0.298 Sum_probs=166.0
Q ss_pred CcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCC
Q 027173 37 SASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNG 116 (227)
Q Consensus 37 ~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~ 116 (227)
.+|.+|+++.|+++|.++.|+++|++. + ++++.+|.++++||.+++.+|+++++|+++|++|+|||++..++++.
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~-- 78 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK-- 78 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG--
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH--
Confidence 367889999999999999999999985 5 79999999999999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChH
Q 027173 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM 196 (227)
Q Consensus 117 ~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~ 196 (227)
++|++|+|||+||+|+||..+|.+++++. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+
T Consensus 79 -~lqlv~~acL~iA~K~eE~~~p~~~d~~~-~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~---- 152 (269)
T 2b9r_A 79 -MLQLVGVTAMFIASKYEEMYPPEIGDFAF-VTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD---- 152 (269)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC----
T ss_pred -HhhHHHHHHHHHHHhcccccCccHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC----
Confidence 89999999999999999999999999985 688899999999999999999999999999999999999876643
Q ss_pred HHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 197 GFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 197 ~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
..+...|.++++.++.++.|+.|+||++|+|
T Consensus 153 ~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaA 183 (269)
T 2b9r_A 153 VEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183 (269)
T ss_dssp HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHH
Confidence 3466779999999999999999999999986
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.98 E-value=1.3e-32 Score=233.18 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHh
Q 027173 68 SLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE 147 (227)
Q Consensus 68 ~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~ 147 (227)
+....+|..+++||.+++.+++++++|+++|++|||||++...+.+. ++|++|+|||+||+|+||. ++++++++..
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF---PRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhc---CHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 46789999999999999999999999999999999999999999888 8999999999999999995 8899998742
Q ss_pred ----hcCCCc------cHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcccccc
Q 027173 148 ----GAKYIF------ETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQ 217 (227)
Q Consensus 148 ----~~~~~~------t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl 217 (227)
.+++.| ++++|++||+.||++|+|++++|||+.|+..|++.++........+...|.++++.++.++.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 223334 5899999999999999999999999999999999988764333468899999999999999999
Q ss_pred ccccchhccC
Q 027173 218 LLPVNATTRA 227 (227)
Q Consensus 218 ~~~PS~~A~A 227 (227)
.|+||+||+|
T Consensus 191 ~~~Ps~IAaA 200 (258)
T 2i53_A 191 QWEPEIIAVA 200 (258)
T ss_dssp TSCHHHHHHH
T ss_pred ccChHHHHHH
Confidence 9999999986
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.97 E-value=1.2e-30 Score=221.06 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhh
Q 027173 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (227)
Q Consensus 69 i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~ 148 (227)
....+|..+++||.+++.+++++++|+++|++|||||++...+.+. ++|++|+|||+||+|+||. ++++++++...
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKF---NKNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhh---CHHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 3458999999999999999999999999999999999999999888 8999999999999999999 88999986321
Q ss_pred -------------cCCCcc--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc-
Q 027173 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQ- 212 (227)
Q Consensus 149 -------------~~~~~t--~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~- 212 (227)
+++.|+ +++|++||+.||++|+|++++|||+.|+..|++.++.. ..+.+.|.+++..++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~----~~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS----KDLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC----cHHHHHHHHHHHhhhhc
Confidence 234555 89999999999999999999999999999999998754 4577889999988885
Q ss_pred cccccccccchhccC
Q 027173 213 GENHQLLPVNATTRA 227 (227)
Q Consensus 213 d~~fl~~~PS~~A~A 227 (227)
+..|+.|+||+||+|
T Consensus 178 ~~~~l~~~Ps~IAaA 192 (257)
T 2ivx_A 178 TTFCLQYKPTVIACV 192 (257)
T ss_dssp CCGGGTSCHHHHHHH
T ss_pred ccHHHcCCHHHHHHH
Confidence 556999999999986
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.3e-29 Score=210.73 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCC-CCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcC--
Q 027173 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPD-NNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAK-- 150 (227)
Q Consensus 74 R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~-~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~-- 150 (227)
|...++||.+++..++++++|+++|++|||||++...+.+ . ++|++|+|||+||+|+||. ++++++++. .++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~---~~~lv~~acL~lA~K~Ee~-~~~l~d~~~-~~~~~ 102 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGF---SLEALVATCIYLSCKVEEC-PVHIRTICN-EANDL 102 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCC---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc---CHHHHHHHHHHHHhccccC-cccHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999988 7 7999999999999999995 778999875 332
Q ss_pred ----CCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhcc
Q 027173 151 ----YIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTR 226 (227)
Q Consensus 151 ----~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~ 226 (227)
+.+++++|.+||+.||++|+|++.++||+.|+..|+..++.. ..+...|.+++..++.+..++.|+||.||+
T Consensus 103 ~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 103 WSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 368999999999999999999999999999999999876532 457889999999999999999999999998
Q ss_pred C
Q 027173 227 A 227 (227)
Q Consensus 227 A 227 (227)
|
T Consensus 179 A 179 (235)
T 1zp2_A 179 A 179 (235)
T ss_dssp H
T ss_pred H
Confidence 6
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=216.48 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhh--
Q 027173 71 ASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG-- 148 (227)
Q Consensus 71 ~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~-- 148 (227)
.++|..+++||.+++..++++++|+++|++|||||+....+.+. ++|++|+|||+||+|+||..+|.+++++...
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI---DPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc---CHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999888 8999999999999999999888888876321
Q ss_pred -----------cCCCccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcccccc
Q 027173 149 -----------AKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQ 217 (227)
Q Consensus 149 -----------~~~~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl 217 (227)
.++.+++++|++||+.||++|+|++.++||+.|+..|++.++. ...+.+.|.+++..++.+..|+
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~----~~~~~~~A~~~l~~sl~t~~~l 192 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ----EDMLLPLAWRIVNDTYRTDLCL 192 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC----HHHHHHHHHHHHHHHTTSSHHH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHccChhh
Confidence 2345789999999999999999999999999999999999874 3568889999999999999999
Q ss_pred ccccchhccC
Q 027173 218 LLPVNATTRA 227 (227)
Q Consensus 218 ~~~PS~~A~A 227 (227)
.|+||+||+|
T Consensus 193 ~~~Ps~IAaA 202 (285)
T 3rgf_B 193 LYPPFMIALA 202 (285)
T ss_dssp HSCHHHHHHH
T ss_pred ccCHHHHHHH
Confidence 9999999986
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.96 E-value=9e-30 Score=225.28 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhh
Q 027173 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (227)
Q Consensus 69 i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~ 148 (227)
....+|..+++||.+++..|+++++|+++|++|||||++...+.+. ++|++|+||||||+|+||. ++++++++...
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~---~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRF---PGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---cHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 4468999999999999999999999999999999999999999888 8999999999999999999 88999987311
Q ss_pred -------------cCCCcc--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc-
Q 027173 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQ- 212 (227)
Q Consensus 149 -------------~~~~~t--~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~- 212 (227)
.+..|+ +++|++||+.||++|+|++.+|||+.||..|+..++.. ..+.+.|++++..++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 233454 89999999999999999999999999999999988753 4577889999988885
Q ss_pred cccccccccchhccC
Q 027173 213 GENHQLLPVNATTRA 227 (227)
Q Consensus 213 d~~fl~~~PS~~A~A 227 (227)
+..|+.|+||+||+|
T Consensus 185 t~l~l~y~Ps~IAaA 199 (358)
T 2pk2_A 185 TTFSLQYTPPVVACV 199 (358)
T ss_dssp SCGGGTSCHHHHTTT
T ss_pred CcchhccCHHHHHHH
Confidence 445899999999997
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.95 E-value=1.1e-27 Score=209.21 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhh
Q 027173 71 ASAREESVAWILKVQAYYN--FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (227)
Q Consensus 71 ~~~R~~lv~wm~~v~~~~~--l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~ 148 (227)
..+|...++||.+++..|+ ++++|+++|++|||||+....+.+. ++|++|+|||+||+|+||. ++++++++...
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY---HPRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc---CHHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4568889999999999999 9999999999999999999999888 8999999999999999998 67899987533
Q ss_pred cCC----CccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHhhccccccccc
Q 027173 149 AKY----IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLD----PTGTFMGFLISRATKIILSNIQGENHQLLP 220 (227)
Q Consensus 149 ~~~----~~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~----~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~ 220 (227)
.+. .+++++|++||+.||++|+|++.++||+.|+..|+..+. +.+. ...+...|++++..++.+..++.|+
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~-~~~l~~~A~~~l~~sl~t~~~l~~~ 208 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN-PEILRKTADDFLNRIALTDAYLLYT 208 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHHHHHTTSTHHHHSC
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhccHHHcCC
Confidence 222 367899999999999999999999999999999997652 2222 3567889999999999999999999
Q ss_pred cchhccC
Q 027173 221 VNATTRA 227 (227)
Q Consensus 221 PS~~A~A 227 (227)
||+||+|
T Consensus 209 Ps~IAaA 215 (323)
T 1jkw_A 209 PSQIALT 215 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.87 E-value=1.9e-21 Score=159.41 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCC
Q 027173 73 AREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYI 152 (227)
Q Consensus 73 ~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~ 152 (227)
......++|.+++..++++++|...|+.||+||+....+... +.++++++|+++|+|+||. |+++.++.. ..+
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~-p~~l~di~~-~~~-- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGV-PRTFKEICA-VSR-- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH-TSS--
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCC-CCCHHHHHH-HHC--
Confidence 456788999999999999999999999999999999888877 7999999999999999998 789999874 444
Q ss_pred ccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 153 FETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 153 ~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
+++++|.++|+.|++.|+|++..++|+.|+..|...++.+ ..+.+.|.+++..+..+.-++.++|+.||+|
T Consensus 77 ~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~----~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaA 147 (207)
T 1c9b_A 77 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP----KQVQMAATHIARKAVELDLVPGRSPISVAAA 147 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHcCccCCCChHHHHHH
Confidence 7899999999999999999999999999999999998865 3467789999999998889999999999986
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.74 E-value=2.8e-17 Score=133.79 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCC
Q 027173 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (227)
Q Consensus 72 ~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~ 151 (227)
.......++|.+++..+++++.+...|..|++|++....+... ..+.++++|+++|+|.++ .|..+.++.. ..+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~-~p~~l~di~~-~~~- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLK-VPRTLDEIAD-IAR- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHT-CCCCHHHHHH-HTT-
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcC-CCCCHHHHHH-HHC-
Confidence 4457889999999999999999999999999999998877766 799999999999999998 4889999875 343
Q ss_pred CccHHHHHHHHHHHHHHcCCcccC--CChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173 152 IFETKTIRRMELLVLSVLDWRLRS--VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA 227 (227)
Q Consensus 152 ~~t~~~i~~~E~~IL~~L~~~l~~--pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A 227 (227)
++..+|.++++.|++.|+|++.. ++|..|+..|...++.++ .+.+.|.+++..+..+.-+..++|+.+|+|
T Consensus 81 -v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaA 153 (200)
T 1ais_B 81 -VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAA 153 (200)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHH
Confidence 78999999999999999999999 999999999999998653 477889999999999999999999999986
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.6e-14 Score=124.78 Aligned_cols=143 Identities=9% Similarity=0.022 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCc
Q 027173 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (227)
Q Consensus 74 R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~ 153 (227)
.......|.+++..++++..+.-.|..||.|++....+... ..+.++++|++||+|.++. |..+.++.. ..+ +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr---~~~~vaaAclyiAcR~e~~-prtl~ei~~-~~~--v 198 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQS-LIH--V 198 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC---CSHHHHTTTTTTTSBTTBS-SCCHHHHHH-SSS--C
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC---cHHHHHHHHHHHHHHHcCC-CccHHHHHH-HHC--C
Confidence 35777899999999999999999999999999999888766 7999999999999999887 789999874 343 7
Q ss_pred cHHHHHHHHHHHHHHcC------------CcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcccccccccc
Q 027173 154 ETKTIRRMELLVLSVLD------------WRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPV 221 (227)
Q Consensus 154 t~~~i~~~E~~IL~~L~------------~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~P 221 (227)
++++|.++++.|++.|+ +++..++|..|+..|...++.+. .+...|++++..+..+.-+..++|
T Consensus 199 ~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~P 274 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp CSHHHHHHHHHHHHHHTCC-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCCH
Confidence 89999999999999999 99999999999999999988653 367789999999998888999999
Q ss_pred chhccC
Q 027173 222 NATTRA 227 (227)
Q Consensus 222 S~~A~A 227 (227)
+.||+|
T Consensus 275 ~~IAaA 280 (345)
T 3k7a_M 275 ITIAVV 280 (345)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 999987
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.91 E-value=4.4e-09 Score=92.26 Aligned_cols=142 Identities=9% Similarity=0.042 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCcc
Q 027173 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (227)
Q Consensus 75 ~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t 154 (227)
......|.+++..++++..+.-.|..++.++.....+... ....++++|+++|+|.++. |..+.++.. ..+ .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGr---s~e~vaAAclYiACR~~~~-prtl~eI~~-~~~--v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQS-LIH--VK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTC---CHHHHHHHHHHHHHHHTCC-BCCHHHHHH-HHT--CC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCC---CHHHHHHHHHHHHHHhcCC-CccHHHHHH-HhC--CC
Confidence 4566678999999999999999999999999988777666 6899999999999999875 778888874 333 67
Q ss_pred HHHHHHHHHHHHHHcCCc------------ccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccc
Q 027173 155 TKTIRRMELLVLSVLDWR------------LRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVN 222 (227)
Q Consensus 155 ~~~i~~~E~~IL~~L~~~------------l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS 222 (227)
+++|-+..+.|.+.|+.. +....|.+|+..|...|+.+.+ +...|..++..+..+.-...-.|+
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~----v~~~A~~i~~~~~~~~i~~GR~P~ 275 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ----VTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHhcccccCCChH
Confidence 899999999999999974 6778999999999999887543 566678888777766666788899
Q ss_pred hhccC
Q 027173 223 ATTRA 227 (227)
Q Consensus 223 ~~A~A 227 (227)
.||+|
T Consensus 276 ~IAAA 280 (345)
T 4bbr_M 276 TIAVV 280 (345)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99887
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.83 E-value=3.8e-08 Score=83.65 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccH
Q 027173 76 ESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFET 155 (227)
Q Consensus 76 ~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~ 155 (227)
.+-+|+.++..+.+++.+++-.|..|+||+....+.-.-++...+.+-++|+.+|+|+-+........+... + .++.
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-g--Gisl 152 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-G--GVRC 152 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-H--TSCH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-c--CcCH
Confidence 467799999999999999999999999999986432111123689999999999999988777788887753 3 3799
Q ss_pred HHHHHHHHHHHHHcCCcccCCChHHHHHHHHHh
Q 027173 156 KTIRRMELLVLSVLDWRLRSVTPFSFIYFFACK 188 (227)
Q Consensus 156 ~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~ 188 (227)
+|+..||+..|..|+|+|.++ +..|..+++..
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 999999999999999999855 55677766654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.60 E-value=0.019 Score=45.65 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHH
Q 027173 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i 158 (227)
++|.+.+..++++.++...|..++.+.....-.... ...-++++|+++|++..+. +....++.. .++ .+..+|
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr---~P~~iAaAaly~A~~~~~~-~~t~~ei~~-~~~--vs~~ti 182 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGK---SPAGLVAAALYIASLLEGE-KRTQREVAE-VAR--VTEVTV 182 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH-HHT--CCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCC---CHHHHHHHHHHHHHHHhCC-CCCHHHHHH-HhC--CCHHHH
Confidence 567788889999999999999999999977655555 6889999999999999764 446777764 343 688999
Q ss_pred HHHHHHHHHHcCCccc
Q 027173 159 RRMELLVLSVLDWRLR 174 (227)
Q Consensus 159 ~~~E~~IL~~L~~~l~ 174 (227)
.+.=+.+.+.|+-++.
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 183 RNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999886553
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.69 E-value=0.21 Score=39.64 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHH
Q 027173 78 VAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKT 157 (227)
Q Consensus 78 v~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~ 157 (227)
-++|.+.+..++++.++..+|..++..-+...-.... ....++++|+++|++..+. +....++.. ..+ .+..+
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~---~P~~IAaAaiylA~~~~~~-~~~~~~i~~-~~~--v~~~t 175 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGR---SPISVAAAAIYMASQASAE-KRTQKEIGD-IAG--VADVT 175 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTC---CHHHHHHHHHHHHHHTSSS-CCCHHHHHH-HHT--CCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCC---ChHHHHHHHHHHHHHHHCC-CCCHHHHHH-HhC--CCHHH
Confidence 3556788889999999999999999998875544445 6889999999999999764 345666653 333 57888
Q ss_pred HHHHHHHHHHHcC
Q 027173 158 IRRMELLVLSVLD 170 (227)
Q Consensus 158 i~~~E~~IL~~L~ 170 (227)
|.+.=+.+.+.++
T Consensus 176 I~~~~~~l~~~l~ 188 (207)
T 1c9b_A 176 IRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777776554
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=89.48 E-value=0.62 Score=37.72 Aligned_cols=82 Identities=10% Similarity=-0.079 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHH
Q 027173 80 WILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (227)
Q Consensus 80 wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~ 159 (227)
++...+..++++.++..+|..++..-+........ ....+|++|+++|++..+...|. +-. ... .++.++|.
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~--~~~-~~~--~~~~~~i~ 208 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMA---HPHQLAYAALLISCCNDENTIPK--LLD-LIK--STDAFKVI 208 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHTSCTTHHHH--HHH-HCC--HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhcc---CHHHHHHHHHHHHHHhcCCCCCC--Ccc-hhh--cCCHHHHH
Confidence 44455556788999999999999887755544455 67899999999999986542221 111 111 46788888
Q ss_pred HHHHHHHHHc
Q 027173 160 RMELLVLSVL 169 (227)
Q Consensus 160 ~~E~~IL~~L 169 (227)
..=..|++..
T Consensus 209 ~~~~~i~~ly 218 (235)
T 1zp2_A 209 LCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.23 E-value=2.2 Score=34.84 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHh-cCccCCCCCchhHHHHHHHHHHHhhcccccCCChh---hHHHhhcCCCcc
Q 027173 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLY-SRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFE 154 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl~lAv~~~Drfls-~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~---~l~~~~~~~~~t 154 (227)
+++......++.+.+...+|..++..-+. ....-.. ....+|++|+++|+++.+...|... .... .-+..++
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~-~~~~~~~ 223 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQY---KPTVIACVCIHLACKWSNWEIPVSTDGKHWWE-YVDPTVT 223 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTS---CHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGG-GTCSSCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcC---CHHHHHHHHHHHHHHHhCCCCCCCCCCchHHH-HhCCCCC
Confidence 35556667788888998999988865552 2223334 5789999999999999664433211 1111 1122478
Q ss_pred HHHHHHHHHHHHHHc
Q 027173 155 TKTIRRMELLVLSVL 169 (227)
Q Consensus 155 ~~~i~~~E~~IL~~L 169 (227)
.++|...-..|+..+
T Consensus 224 ~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 224 LELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.14 E-value=1.8 Score=35.28 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCh----hHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCCh------hhHHHhh
Q 027173 79 AWILKVQAYYNFLP----LTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSL------LDLQVEG 148 (227)
Q Consensus 79 ~wm~~v~~~~~l~~----etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~------~~l~~~~ 148 (227)
+++...+..++.+. +...+|..+++.-+.....-.. ....+|++|+++|+++.+...+.. .......
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQW---EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhcc---ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46666777777776 5788888898887765555455 678999999999999865432211 1111111
Q ss_pred cCCCccHHHHHHHHHHHHHHcC
Q 027173 149 AKYIFETKTIRRMELLVLSVLD 170 (227)
Q Consensus 149 ~~~~~t~~~i~~~E~~IL~~L~ 170 (227)
...++.++|...-..|++..+
T Consensus 230 -~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 -VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp -SSSCCHHHHHHHHHHHHTTTS
T ss_pred -ccCCCHHHHHHHHHHHHHHHh
Confidence 114789999999999988654
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.83 E-value=2.5 Score=35.24 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHH
Q 027173 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i 158 (227)
+++...+..++.+.++..+|..++..-+.....-.. .-..||++|+++|++...... ..... ...++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAaiylA~~~~~~~~---~~W~~---~~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY---PPFMIALACLHVACVVQQKDA---RQWFA---ELSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHS---CHHHHHHHHHHHHHHHTTCCC---HHHHH---TSCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhcc---CHHHHHHHHHHHHHHHcCCCh---hhHHH---HHCCCHHHH
Confidence 455666677788889999999999887654433334 578999999999999865422 23322 224788999
Q ss_pred HHHHHHHHHHcC
Q 027173 159 RRMELLVLSVLD 170 (227)
Q Consensus 159 ~~~E~~IL~~L~ 170 (227)
..+-..|+....
T Consensus 230 ~~~~~~il~ly~ 241 (285)
T 3rgf_B 230 LEIIRVILKLYE 241 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888644
No 26
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=84.54 E-value=6.7 Score=31.93 Aligned_cols=87 Identities=7% Similarity=-0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCChhH----HHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccC----CChhhHHHhhc
Q 027173 78 VAWILKVQAYYNFLPLT----SYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVV----PSLLDLQVEGA 149 (227)
Q Consensus 78 v~wm~~v~~~~~l~~et----l~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~----~~~~~l~~~~~ 149 (227)
.+|+......++.+.++ ..+|..+++..+........ ....+|++|+++|.+.-+..+ +.....+...+
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t 228 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSL---PASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL 228 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGS---CHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCc---CHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH
Confidence 35566666677777665 34577777766655444445 578999999999999876421 22222222234
Q ss_pred CCCccHHHHHHHHHHHHHHc
Q 027173 150 KYIFETKTIRRMELLVLSVL 169 (227)
Q Consensus 150 ~~~~t~~~i~~~E~~IL~~L 169 (227)
+ ++.++|...=..|.+.+
T Consensus 229 ~--~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 229 G--CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp T--CCHHHHHHHHHHHHHHH
T ss_pred C--cCHHHHHHHHHHHHHHH
Confidence 3 68888888776666543
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=83.46 E-value=7 Score=31.74 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCChhHH----HHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCC----hhhHHHhhcC
Q 027173 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAK 150 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl----~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~----~~~l~~~~~~ 150 (227)
+|+......++.+.++. ..|..+++.-+........ ....+|++|+++|.+.....+.. ...+. ..++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~---~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~-~~tg 229 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALL---SPGLICAGGLLTTIETDNTNCRPWTCYLEDLS-SILN 229 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTS---CHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHH-HHHT
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhcc---CHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHHC
Confidence 34445555666766653 3566777766554444455 67899999999999995332222 33443 2444
Q ss_pred CCccHHHHHHHHHHHHHHc
Q 027173 151 YIFETKTIRRMELLVLSVL 169 (227)
Q Consensus 151 ~~~t~~~i~~~E~~IL~~L 169 (227)
++.++|..+=..|.+.+
T Consensus 230 --~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 230 --FSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHH
Confidence 68888888777776643
No 28
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=80.35 E-value=12 Score=29.98 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCcc
Q 027173 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (227)
Q Consensus 75 ~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t 154 (227)
..+.+.|..++.+-+++..++--||.+--.|.-.+.-......+-+=++++|+.||+.-- ..|.++.++.. -+....
T Consensus 13 P~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~-~~PiplaE~r~--lD~sL~ 89 (260)
T 3h4c_A 13 PTMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEA-QQPLPLAEVRC--LDSSLG 89 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHT-TCCCCHHHHHH--HCTTCC
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHc-CCCccHHHHHH--Hhhhhh
Confidence 567788899999999999999999999999886543221111168899999999999654 44667777653 233334
Q ss_pred HHHHHHHHHHHHHHcCC
Q 027173 155 TKTIRRMELLVLSVLDW 171 (227)
Q Consensus 155 ~~~i~~~E~~IL~~L~~ 171 (227)
.-++.+ .+|++.++-
T Consensus 90 Dvelrr--~Eiv~~l~l 104 (260)
T 3h4c_A 90 DVELRR--ADIVRELHL 104 (260)
T ss_dssp CHHHHH--HHHHHHTTC
T ss_pred HHHHHH--HHHHHHccC
Confidence 233333 345566553
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=79.86 E-value=3.2 Score=35.92 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHhcCc-cCCCCCchhHHHHHHHHHHHhhcccccCCChh---hHHHhhcCCCccH
Q 027173 80 WILKVQAYYNFLPLTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFET 155 (227)
Q Consensus 80 wm~~v~~~~~l~~etl~lAv~~~Drfls~~~-i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~---~l~~~~~~~~~t~ 155 (227)
++......++.+.+...+|..++..-+.... .-.. ....||++|+++|+++.+...|... .... .-+-.++.
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y---~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~-~~~~~vt~ 231 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQY---TPPVVACVCIHLACKWSNWEIPVSTDGKHWWE-YVDATVTL 231 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTS---CHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTT-TSCSSCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhcc---CHHHHHHHHHHHHHHHhCCCCCCCccccchHH-HHhccCCH
Confidence 4555666778888999999988866553222 2334 5789999999999999764433211 1111 11124689
Q ss_pred HHHHHHHHHHHHHcC
Q 027173 156 KTIRRMELLVLSVLD 170 (227)
Q Consensus 156 ~~i~~~E~~IL~~L~ 170 (227)
++|...-..|+..++
T Consensus 232 ~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 232 ELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=79.31 E-value=5.4 Score=32.54 Aligned_cols=85 Identities=7% Similarity=-0.080 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCh-hHHHHHHHHHHHHHhcCc-cCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccH
Q 027173 78 VAWILKVQAYYNFLP-LTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFET 155 (227)
Q Consensus 78 v~wm~~v~~~~~l~~-etl~lAv~~~Drfls~~~-i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~ 155 (227)
.+|+......++.+. ++..+|..+++.-+.... .... ....+|++|+++|.+.-+. ++....+.. .++ ++.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~---~Ps~iAaAai~lA~~~~~~-~~w~~~l~~-~~g--~~~ 212 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKY---LPSVIAGAAFHLALYTVTG-QSWPESLIR-KTG--YTL 212 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTS---CHHHHHHHHHHHHHHHHHS-CCSCHHHHH-HHC--CCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCC---CHHHHHHHHHHHHHHHhCC-CcchHHHHH-HhC--cCH
Confidence 356666666677665 677788888887654443 3444 5789999999999998654 333344432 343 688
Q ss_pred HHHHHHHHHHHHHc
Q 027173 156 KTIRRMELLVLSVL 169 (227)
Q Consensus 156 ~~i~~~E~~IL~~L 169 (227)
++|...=..|...+
T Consensus 213 ~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 213 ESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776654
No 31
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=76.19 E-value=13 Score=31.13 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChh---hHHHhhcCCCccHHHHHHHHHHHHHHcCCc
Q 027173 96 YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFETKTIRRMELLVLSVLDWR 172 (227)
Q Consensus 96 ~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~---~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~ 172 (227)
..|.++++..+.....-.. .-..+|++|+++|.+.-+..++... ..+...++ ++.++|..+=..|+..+.=.
T Consensus 194 ~~a~~~l~lsl~d~~~l~~---~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg--~~~~~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 194 KHAQTFLALCATDYTFAMY---PPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG--TEVDCLRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHCGGGTTS---CHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhccC---CHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH
Confidence 4455666655554444445 5789999999999998775543322 22222343 78899999888888877644
Q ss_pred c
Q 027173 173 L 173 (227)
Q Consensus 173 l 173 (227)
+
T Consensus 269 l 269 (306)
T 3g33_B 269 L 269 (306)
T ss_dssp -
T ss_pred H
Confidence 4
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=74.92 E-value=4.1 Score=33.56 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHH
Q 027173 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i 158 (227)
+|+...+...+++.++..+|..+++.-+........ ....+|++|+++|.+.-+.. +....+.. .++ ++..+|
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~---~Ps~iAaAai~lA~~~l~~~-~w~~~l~~-~tg--~~~~~l 212 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHF---PPSQIAAGAFSLALKILDNG-EWTPTLQH-YLS--YTEESL 212 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSS---CTTHHHHHHHHHHHHHHTCC-CSCTTHHH-HSC--CCSSTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcC---CHHHHHHHHHHHHHHHhCCC-CCCHHHHH-HHC--CCHHHH
Confidence 466666777788888888899999888766555555 56789999999999986542 23333332 333 455555
Q ss_pred HHHHHHHH
Q 027173 159 RRMELLVL 166 (227)
Q Consensus 159 ~~~E~~IL 166 (227)
...=..|+
T Consensus 213 ~~~~~~l~ 220 (269)
T 2b9r_A 213 LPVMQHLA 220 (269)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=73.49 E-value=0.69 Score=39.92 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccc
Q 027173 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~ 136 (227)
++|...+..++++.++...|..++.+.....-.... ...-|+++|+++|+++.+.
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr---~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGK---SPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCC---CHHHHHHHHHHHHHHHHCC
Confidence 556677778888888888888888887765444444 5678999999999999654
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=72.40 E-value=12 Score=30.61 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCChhHH----HHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhccccc----C---CChhhHHHh
Q 027173 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETV----V---PSLLDLQVE 147 (227)
Q Consensus 79 ~wm~~v~~~~~l~~etl----~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~----~---~~~~~l~~~ 147 (227)
+|+......++.+.++. ..|..+++..+........ ....+|++|+++|.+.-+.. + ....+.+..
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISN---PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHS---CHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhcc---CHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 45555556666666553 3455666654433322233 46789999999999875421 1 111222222
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCcc
Q 027173 148 GAKYIFETKTIRRMELLVLSVLDWRL 173 (227)
Q Consensus 148 ~~~~~~t~~~i~~~E~~IL~~L~~~l 173 (227)
.++ ++..+|...=..|+..++=.+
T Consensus 236 ~~~--v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 236 VIK--CDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HHT--SCHHHHHHHHHHHHHHHTTTT
T ss_pred HHC--cCHHHHHHHHHHHHHHHHHHH
Confidence 343 688899988888888766444
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=67.57 E-value=18 Score=30.56 Aligned_cols=106 Identities=6% Similarity=-0.001 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHh---CCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCC-hhhHHHhhcCCC
Q 027173 77 SVAWILKVQAYY---NFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS-LLDLQVEGAKYI 152 (227)
Q Consensus 77 lv~wm~~v~~~~---~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~-~~~l~~~~~~~~ 152 (227)
+..++..+...+ +.+.+...+|..++..-+.....-.. ....||++|+++|++..+...+. ...+. ...+..
T Consensus 167 L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~w~~~l~-~~~~~~ 242 (323)
T 1jkw_A 167 FEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLY---TPSQIALTAILSSASRAGITMESYLSESL-MLKENR 242 (323)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHS---CHHHHHHHHHHHHHHHHSCCCTTHHHHHT-TSCSSS
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcC---CHHHHHHHHHHHHHHHcCCChHHHHHHHh-cccccc
Confidence 344444444432 22345567788888765543332233 57899999999999987654333 22222 122345
Q ss_pred ccHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHh
Q 027173 153 FETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACK 188 (227)
Q Consensus 153 ~t~~~i~~~E~~IL~~L~~~l~~pTp~~fl~~~l~~ 188 (227)
++.+++...=+.|...+.-. ..|+. .-++.+.++
T Consensus 243 ~~~~~l~~~~~~i~~l~~~~-~~~~~-~~~k~i~~K 276 (323)
T 1jkw_A 243 TCLSQLLDIMKSMRNLVKKY-EPPRS-EEVAVLKQK 276 (323)
T ss_dssp CCTHHHHHHHHHHHHHHHTC-CCCCH-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcc-CCCCH-HHHHHHHHH
Confidence 67788888877777655432 23443 445555444
No 36
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=66.87 E-value=1.2 Score=38.54 Aligned_cols=57 Identities=5% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccc
Q 027173 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (227)
Q Consensus 77 lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~ 136 (227)
..++|...+.+++++.++...|..++.+.....-.... ...-++++|+++|+.+...
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR---~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGK---SPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCC---ChHHHHHHHHHHHHHHhCC
Confidence 44788889999999999999999999888875544444 5677999999999998653
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=44.14 E-value=1.3e+02 Score=24.60 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHH
Q 027173 98 SVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSV 168 (227)
Q Consensus 98 Av~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~ 168 (227)
+..++|.-+........ ....+|++|+++|+. ...+. ..++ ++..+|..+-..|+..
T Consensus 183 ~~~llelsl~d~~~l~~---~PS~iAaAai~la~~--------~~~l~-~~tg--~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 183 IAELLDLCVLDVDCLEF---PYGILAASALYHFSS--------SELMQ-KVSG--YQWCDIENCVKWMVPF 239 (283)
T ss_dssp HHHHHHHHHHSGGGGGS---CHHHHHHHHHHHTSC--------HHHHH-HHSC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcC---CHHHHHHHHHHHHHC--------hHHHH-HHhC--CCHHHHHHHHHHHHHH
Confidence 44444444433333333 456799999999974 22222 2343 6788888776666543
No 38
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=37.01 E-value=1e+02 Score=21.24 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=54.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhcCc------cCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCcc
Q 027173 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYSRR------LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (227)
Q Consensus 81 m~~v~~~~~l~~etl~lAv~~~Drfls~~~------i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t 154 (227)
+.++|..|++.. ....|-.++++|=..-+ ++- .-.....+|+|.|+|.-...+.+. .++ ..++ .+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~----s~P~f~aaA~~~acr~~K~kVdK~-KL~-~~s~--lk 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDL----SRPLFTSAALLSACKILKLKVDKN-KMV-ATSG--VK 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCT----TSHHHHHHHHHHHHHHTTCCCCHH-HHH-HTTC--BC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccc----cccHHHHHHHHHHHHHHccCCCHH-HHH-HHHC--CC
Confidence 457888999865 88888899999986543 222 245677889999999988766443 333 2333 57
Q ss_pred HHHHHHHHHHHHHH
Q 027173 155 TKTIRRMELLVLSV 168 (227)
Q Consensus 155 ~~~i~~~E~~IL~~ 168 (227)
+.++-+.|..+-+.
T Consensus 77 ~~~f~~l~~~~e~~ 90 (95)
T 3m03_A 77 KAIFDRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78887777665543
No 39
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=34.45 E-value=1.4e+02 Score=25.09 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=44.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhc----CccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHH
Q 027173 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYS----RRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQV 146 (227)
Q Consensus 81 m~~v~~~~~l~~etl~lAv~~~Drfls~----~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~ 146 (227)
..++|..++++..|.-.|...+.+.-+. ..... .-+..-.+|+++|++-.+....++.+++.
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~----~~~~~w~acLY~a~~~~~~n~vsLt~LLr 71 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQ----KKKELWGICIFIAAVDLDEMSFTFTELQK 71 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCcc----chHHHHHHhHHHHhhccCCCcCcHHHHHH
Confidence 4578999999999999999999996663 12222 24455556699999877777777877774
No 40
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=33.46 E-value=74 Score=23.71 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHH
Q 027173 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (227)
Q Consensus 120 ql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~ 159 (227)
.|+-++|-.+|.++....+-.++.+.. +. +-||.++-.
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~-I~-nd~t~eEe~ 149 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFN-IK-NDFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTT-CC-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcC-CC-CCCCHHHHH
Confidence 688899999999998876666666542 32 357765543
No 41
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=33.07 E-value=67 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHH
Q 027173 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (227)
Q Consensus 119 lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~ 159 (227)
-.|+-++|-.+|.++....|-.++.+.. +. +-||.++-.
T Consensus 119 k~Lldl~c~~vA~~ikgktpeeiR~~f~-I~-nd~t~eEe~ 157 (169)
T 3v7d_A 119 KPLLDAGCKVVAEMIRGRSPEEIRRTFN-IV-NDFTPEEEA 157 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT-CC-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcC-CC-CCCCHHHHH
Confidence 3688899999999998877766666552 33 457876543
No 42
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=29.46 E-value=1.7e+02 Score=23.51 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCChhHH----HHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCCh---hhHHHhhcCCC
Q 027173 80 WILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSL---LDLQVEGAKYI 152 (227)
Q Consensus 80 wm~~v~~~~~l~~etl----~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~---~~l~~~~~~~~ 152 (227)
|+......++.+.+.. .+|..+++..+.....-.. ..-.+|++|+..+.+- ..+.- .+.+...+ .
T Consensus 152 FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~---~PS~iAaaa~~~~l~~---~~~~~~~~~~~L~~~t--~ 223 (252)
T 1f5q_B 152 LICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMK---RPVLITLACMHLTMNQ---KYDYYENRIDGVCKSL--Y 223 (252)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTS---CHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhcc---CHHHHHHHHHHHHhcc---CCCchhhHHHHHHHHH--C
Confidence 4444444445544322 2344444544443333334 4667888886555421 12221 12222233 3
Q ss_pred ccHHHHHHHHHHHHHHc
Q 027173 153 FETKTIRRMELLVLSVL 169 (227)
Q Consensus 153 ~t~~~i~~~E~~IL~~L 169 (227)
++.+++..+-..|.+.|
T Consensus 224 ~~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 224 ITKEELHQCCDLVDIAI 240 (252)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78899998877777655
No 43
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=29.13 E-value=80 Score=22.94 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHH------------------------HhCCChhHHH-
Q 027173 42 ESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQA------------------------YYNFLPLTSY- 96 (227)
Q Consensus 42 e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~------------------------~~~l~~etl~- 96 (227)
..+++|++... .+ .+.-++++...=+.+++|+..-.. .++++.++++
T Consensus 25 ~~ik~ml~~~~-----~~---~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~e 96 (141)
T 1fs1_B 25 VTIKTMLEDLG-----MD---PVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFE 96 (141)
T ss_dssp HHHHHHHHHTC-----CS---SEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHhcC-----CC---ceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHH
Confidence 36778876531 11 122446888888999999865321 0344444433
Q ss_pred --HHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhH
Q 027173 97 --LSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDL 144 (227)
Q Consensus 97 --lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l 144 (227)
+|.+||| --.|+-++|-.+|.++....|-.++..
T Consensus 97 Li~AAnyL~--------------I~~Lldl~c~~vA~~ikgkt~eeiR~~ 132 (141)
T 1fs1_B 97 LILAANYLD--------------IKGLLDVTCKTVANMIKGKTPEEIRKT 132 (141)
T ss_dssp HHHHHHHHT--------------CHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHh--------------hhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2333332 135788889999998877655444443
No 44
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=26.65 E-value=53 Score=17.15 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 027173 155 TKTIRRMELLVLSVLDWR 172 (227)
Q Consensus 155 ~~~i~~~E~~IL~~L~~~ 172 (227)
.++|..+|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 478999999999999886
No 45
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=22.35 E-value=55 Score=23.15 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q 027173 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFL 106 (227)
Q Consensus 75 ~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfl 106 (227)
..+|+||++.. ...=..|+++++-.+++.=+
T Consensus 41 selVdWLi~~~-~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 41 SGVIDWLVSNK-LVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHHT-SSSSHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCe
Confidence 58999999942 22224677777777776543
Done!