BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027174
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 1 MCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVV 60
+ +GV AGAYIL +A+ + V GL+L++ A W +W +K+ G+ +
Sbjct: 104 IGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSI 156
Query: 61 KELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---E 115
E++L FS+ E+ GN S+++Q R ++ + N+ ++ + N R D++
Sbjct: 157 PEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIENYWNSYNNRRDLNFERG 211
Query: 116 GLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPME 175
G L+C ++ VG+ +P V SK+D ++ +++ G QP + +
Sbjct: 212 GDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFK 271
Query: 176 YFLMGYG 182
YFL G G
Sbjct: 272 YFLQGMG 278
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 17/185 (9%)
Query: 3 MGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKE 62
+GV AGAYIL +A+ + V GL+L++ A W +W +K+ G+ + E
Sbjct: 106 VGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPE 158
Query: 63 LLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGL 117
++L FS+ E+ GN S+++Q R ++ + N+ + + N R D++ G
Sbjct: 159 MILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGD 213
Query: 118 RKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYF 177
L+C ++ VG+ +P V SK+D ++ +++ G QP + +YF
Sbjct: 214 ITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYF 273
Query: 178 LMGYG 182
L G G
Sbjct: 274 LQGMG 278
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 17/185 (9%)
Query: 3 MGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKE 62
+GV AGAYIL +A+ + V GL+L++ A W +W +K+ G+ + E
Sbjct: 106 VGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPE 158
Query: 63 LLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGL 117
++L FS+ E+ GN S+++Q R ++ + N+ + + N R D++ G
Sbjct: 159 MILGHLFSQEELSGN-----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGD 213
Query: 118 RKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYF 177
L+C ++ VG+ +P V SK+D ++ +++ G QP + +YF
Sbjct: 214 ITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYF 273
Query: 178 LMGYG 182
L G G
Sbjct: 274 LQGMG 278
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 1 MCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVV 60
+ +GV AGAYIL+ +A+ + V GL+L++ A W +W +K+ G+ +
Sbjct: 114 IGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSI 166
Query: 61 KELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---E 115
+++L FS+ E+ GN S+++Q R ++ + N+ + + N R D++
Sbjct: 167 PDMILGHLFSQEELSGN-----SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERG 221
Query: 116 GLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPME 175
G L+C ++ VG+ +P V SK+D ++ +++ G QP + +
Sbjct: 222 GETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFK 281
Query: 176 YFLMG 180
YFL G
Sbjct: 282 YFLQG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,573,971
Number of Sequences: 62578
Number of extensions: 248498
Number of successful extensions: 471
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)