BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027175
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 1 MGNVSGRQDGE--GCSGVKKREYEEGFEQSLTELGHGDP------MLHSPPHQSPRAFQP 52
MGNV+ R++ S V+ + E ++++ G+ M SPPH SPRA Q
Sbjct: 1 MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPH-SPRATQS 59
Query: 53 PPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTG 112
P +F QVP+ PL R ++ + + YEE S E+ + ITW GGK++AV G
Sbjct: 60 PLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEG 119
Query: 113 SWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLD 172
SWDNW+ L R GKDF IMK+LPSGVY YRFIVD R+AP++P DD+GN +N+LD
Sbjct: 120 SWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILD 179
Query: 173 LQ 174
LQ
Sbjct: 180 LQ 181
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 55 IFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSW 114
+F QVP+ PL R+ + N +S ++ E+ + ITW+ GG VAV GSW
Sbjct: 62 LFAPQVPVAPLQRA-NAPPPNNIQWNQSQRVFDNPP-EQGIPTIITWNQGGNDVAVEGSW 119
Query: 115 DNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
DNW + L + GKD I+ +LPSG+YHY+ IVD +Y PD+P+ D+ GN N+LD+
Sbjct: 120 DNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH 179
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 97 AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
I WS GGK+V ++GS++NW PL + DFV + LP G + Y+F VD + P
Sbjct: 79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138
Query: 157 VPWECDDSGNAYNVLDLQ 174
P G N++ ++
Sbjct: 139 EPVVTSQLGTINNLIHVK 156
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 97 AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
I WS GGK+V ++GS++NW PL + DFV + LP G + Y+F VD + P
Sbjct: 78 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137
Query: 157 VPWECDDSGNAYNVLDLQ 174
P G N++ ++
Sbjct: 138 EPVVTSQLGTINNLIHVK 155
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 97 AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
I WS GGK+V ++GS++NW PL + DFV + LP G + Y+F VD + P
Sbjct: 78 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137
Query: 157 VPWECDDSGNAYNVLDLQ 174
P G N++ ++
Sbjct: 138 EPVVTSQLGTINNLIHVK 155
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 66 PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P DL +++ E +A+ +L + A W+ GGK+V ++GS++NW
Sbjct: 41 PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F VD + P P G NV+ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVK 156
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 66 PRSGDLMQVRNHAA---ERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P D+ A E +A+ +L ++ A W+ GGK+V ++GS++NW
Sbjct: 41 PEDADIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F VD + P P G N++ ++
Sbjct: 101 SKL-PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 66 PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P DL +++ E +A+ +L + A W+ GGK+V ++GS++NW
Sbjct: 41 PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F VD + P P G N++ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 66 PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P DL +++ E +A+ +L + A W+ GGK+V ++GS++NW
Sbjct: 41 PEDADLFHSEEIKAPEKEEFLAWQRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F VD + P P G N++ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 66 PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P DL +++ E +A+ +L + +A W+ GGK+V ++GS++NW
Sbjct: 6 PEDADLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNW 65
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F+VD + P P G N++ ++
Sbjct: 66 SKL-PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVK 121
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 66 PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
P D+ +++ E +A+ +L + A W+ GGK+V ++GS++NW
Sbjct: 41 PEDADIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100
Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
+ PL R +FV + LP G + Y+F VD + P P G N++ ++
Sbjct: 101 SKL-PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 66 PRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLW- 124
PR Q+R A+ + E+ V I W GG +V VTGS+ W + L
Sbjct: 138 PREEGQQQIR---AKEASGGPSEIKSSLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIP 194
Query: 125 ---RLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDL-QPAGCLG 180
G V +++LP G + +RFIVD LR + +P D GN N +++ QP
Sbjct: 195 DSDNNGSFHVKLRLLP-GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPT 253
Query: 181 EKRERERE 188
++ R +E
Sbjct: 254 NEKIRSKE 261
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 99 ITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKM---LPSGVYHYRFIVDECLRYAP 155
ITW GG +V VTGS+ W + L + +M + LP G + +RFIVD LR++
Sbjct: 166 ITWQQGGNKVYVTGSFTGWRKMIGLVPVPGQPGLMHVKLQLPPGTHRFRFIVDNELRFSD 225
Query: 156 DVPWECDDSGNAYNVLDL--------QPAGCLGEKR 183
+P D GN N +++ +P L EK+
Sbjct: 226 YLPTATDQMGNFVNYMEVSAPPDWGNEPQQHLAEKK 261
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 95 VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYA 154
V I W GG+ V VTGS+ W+ L + +D+ ++ L G ++F+VD +
Sbjct: 99 VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLK-SEDYTVLLQLRPGTQRFKFLVDGIWCCS 157
Query: 155 PDVPWECDDSGNAYNVLDLQPAGCLG 180
D P D GN YN L+++ LG
Sbjct: 158 SDFPTATDAEGNLYNYLEVEANEKLG 183
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 99 ITWSLGGKQVAVTGSWDNWEN---VDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAP 155
W GG++V ++GS+ W + PL F ++ L G + Y+F VD R+
Sbjct: 25 FVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWRHDE 84
Query: 156 DVPWECDDSGNAYNVL----DLQPAGCLGEKRERERERE-----REMNGADRATPYLSIA 206
P+ + G + D+ PAG E R R + + A P +S
Sbjct: 85 HQPFVSGNGGVVNTIFITGPDMVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGV 144
Query: 207 FLKASR 212
L+ SR
Sbjct: 145 DLELSR 150
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 105 GKQVAVTGSWD-NW-ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECD 162
G++V + G + NW E + + G F L G Y+Y++I++ R++ P E D
Sbjct: 466 GEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGKYYYKYIINGDWRHSATSPTERD 525
Query: 163 DSGNAYNVLDLQPAGCLGEKREREREREREMNGADRA-TPYLSIAFLKASRCF 214
D GN N++ + + ++ R+ + +R T KA+RC
Sbjct: 526 DRGNTNNIIVVGDVANVRPTIQQPRKDANIIKVIERVLTESERFRLAKAARCI 578
>sp|E7NIP0|CRP1_YEASO Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersO) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|E7Q4T7|CRP1_YEASB Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersB) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLXNKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|E7KPJ0|CRP1_YEASL Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin QA23) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|C8Z9U3|CRP1_YEAS8 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=CRP1 PE=3
SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|C7GJZ2|CRP1_YEAS2 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|P38845|CRP1_YEAST Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CRP1 PE=1 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|A6ZT54|CRP1_YEAS7 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|E7LVH4|CRP1_YEASV Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain VIN 13) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|E7KDM2|CRP1_YEASA Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain AWRI796) GN=CRP1 PE=3 SV=2
Length = 465
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|B3LSR0|CRP1_YEAS1 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=CRP1 PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 89 LSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKML----PSGVYHY 143
+S E +W G K V +TG++D+W PL + K +F I + + +
Sbjct: 1 MSSELMFNYTFSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQF 60
Query: 144 RFIVD 148
+FIVD
Sbjct: 61 KFIVD 65
>sp|Q5B3I8|RNA14_EMENI mRNA 3'-end-processing protein rna14 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rna14 PE=3 SV=2
Length = 1075
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 106 KQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDD-- 163
+Q+ + W NWE DPL D K VY + LR+ P++ +E D
Sbjct: 484 QQIEIWKRWINWEKGDPLVLKEDDLTAYKGRVVYVYKQALM---ALRFLPEIWFEAADFC 540
Query: 164 -------SGNAY--NVLDLQPAGCL 179
GN + N +D P CL
Sbjct: 541 FLNDMETEGNEFLKNGIDANPESCL 565
>sp|Q21V06|SYE_RHOFD Glutamate--tRNA ligase OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=gltX PE=3 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 23 EGFEQSLTELGHGDPMLHSPPHQSP--RAF-QPPPIFTSQVPMDPLPRSGDLMQVRNHAA 79
+ + ++T + GD +++ P Q +A Q PP++ + +P L G+ M RN A
Sbjct: 194 DDLDMAITHVIRGDDHVNNTPRQINIFKALGQEPPVY-AHLPT-VLNEQGEKMSKRNGA- 250
Query: 80 ERSMAYYEELSYEKQVA----AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKM 135
+ + Y + Y A + WS G ++ + W N+D L R F K+
Sbjct: 251 -KPVTQYRDEGYLPDAMVNYLARLGWSHGDDEIFSRAQFLQWFNLDHLGRSAAQFDEAKL 309
Query: 136 LPSGVYHYRFIVDECL 151
H + + D+ L
Sbjct: 310 RWVNAQHLKIMSDDAL 325
>sp|C6E5H7|G6PI_GEOSM Glucose-6-phosphate isomerase OS=Geobacter sp. (strain M21) GN=pgi
PE=3 SV=1
Length = 530
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 59 QVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWE 118
Q + + +SG + RN E A+ + A A+T S G ++ T SW++W
Sbjct: 169 QTLVVVISKSGGTKETRNGMLEARRAFERAGLHFAAHAVAVTGS--GSELDGTASWESWL 226
Query: 119 NVDPLW 124
V P+W
Sbjct: 227 GVFPMW 232
>sp|P32578|SIP1_YEAST SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP1 PE=1 SV=2
Length = 815
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 112 GSWDNWENVDPLWRLGKD------FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSG 165
S D+ + ++P R+ D FV LP+G+Y +F ++ L ++ +P D G
Sbjct: 493 ASLDSEKQLNPRIRMVYDDVHKEWFVPDLFLPAGIYRLQFSINGILTHSNFLPTATDSEG 552
Query: 166 NAYNVLDLQPA 176
N N ++ P
Sbjct: 553 NFVNWFEVLPG 563
>sp|A6ZZ19|SIP1_YEAS7 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SIP1 PE=3 SV=2
Length = 815
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 112 GSWDNWENVDPLWRLGKD------FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSG 165
S D+ + ++P R+ D FV LP+G+Y +F ++ L ++ +P D G
Sbjct: 493 ASLDSEKQLNPRIRMVYDDVHKEWFVPDLFLPAGIYRLQFSINGILTHSNFLPTATDSEG 552
Query: 166 NAYNVLDLQPA 176
N N ++ P
Sbjct: 553 NFVNWFEVLPG 563
>sp|B3LFN4|SIP1_YEAS1 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SIP1 PE=3 SV=2
Length = 815
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 112 GSWDNWENVDPLWRLGKD------FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSG 165
S D+ + ++P R+ D FV LP+G+Y +F ++ L ++ +P D G
Sbjct: 493 ASLDSEKQLNPRIRMVYDDVHKEWFVPDLFLPAGIYRLQFSINGILTHSNFLPTATDSEG 552
Query: 166 NAYNVLDLQPA 176
N N ++ P
Sbjct: 553 NFVNWFEVLPG 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,539,747
Number of Sequences: 539616
Number of extensions: 4085159
Number of successful extensions: 12798
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 12732
Number of HSP's gapped (non-prelim): 81
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)