Query 027175
Match_columns 227
No_of_seqs 233 out of 785
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.5E-26 3.2E-31 172.4 9.7 78 95-172 2-79 (79)
2 KOG1616 Protein involved in Sn 99.9 1.7E-22 3.8E-27 183.2 12.1 128 49-177 34-165 (289)
3 cd02861 E_set_proteins_like E 99.8 4.7E-19 1E-23 131.9 9.4 76 95-171 2-81 (82)
4 cd02858 Esterase_N_term Estera 99.3 2.5E-11 5.3E-16 91.3 9.0 75 96-171 7-84 (85)
5 cd02688 E_set E or "early" set 98.8 1.7E-08 3.6E-13 72.2 7.8 68 96-163 5-75 (83)
6 cd02854 Glycogen_branching_enz 98.5 3.9E-07 8.5E-12 70.9 7.6 65 96-160 6-85 (99)
7 PF02922 CBM_48: Carbohydrate- 98.5 1.6E-07 3.5E-12 69.0 4.4 56 96-151 12-74 (85)
8 cd02860 Pullulanase_N_term Pul 97.9 4.8E-05 1.1E-09 58.1 6.8 63 97-161 10-85 (100)
9 cd02855 Glycogen_branching_enz 97.6 0.00051 1.1E-08 51.9 9.1 50 97-147 23-77 (106)
10 cd05808 CBM20_alpha_amylase Al 97.6 0.00028 6E-09 53.0 6.9 52 96-147 2-63 (95)
11 PF00686 CBM_20: Starch bindin 97.6 0.00022 4.7E-09 54.2 6.2 53 95-147 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00015 3.3E-09 72.7 6.2 62 95-157 36-107 (628)
13 PLN02447 1,4-alpha-glucan-bran 97.4 0.00041 8.8E-09 71.0 8.1 62 96-158 115-191 (758)
14 PRK12313 glycogen branching en 97.3 0.00091 2E-08 66.7 7.9 62 96-157 39-108 (633)
15 cd02856 Glycogen_debranching_e 97.2 0.0012 2.6E-08 50.8 6.5 52 97-150 11-67 (103)
16 PRK12568 glycogen branching en 97.2 0.00089 1.9E-08 68.3 7.3 62 96-158 139-209 (730)
17 cd05818 CBM20_water_dikinase P 97.2 0.0049 1.1E-07 46.9 9.6 53 95-147 2-61 (92)
18 PRK14705 glycogen branching en 97.2 0.00092 2E-08 71.5 7.2 60 96-156 639-708 (1224)
19 cd02852 Isoamylase_N_term Isoa 97.1 0.0014 2.9E-08 51.6 6.3 54 97-152 9-73 (119)
20 cd05814 CBM20_Prei4 Prei4, N-t 97.1 0.0017 3.7E-08 51.6 6.5 46 104-149 14-68 (120)
21 cd05809 CBM20_beta_amylase Bet 97.0 0.0045 9.8E-08 47.6 8.4 54 94-147 2-68 (99)
22 cd05820 CBM20_novamyl Novamyl 97.0 0.0087 1.9E-07 46.4 9.8 54 94-147 2-70 (103)
23 cd05813 CBM20_genethonin_1 Gen 97.0 0.0025 5.4E-08 48.3 6.6 53 95-147 1-62 (95)
24 PRK14706 glycogen branching en 97.0 0.0016 3.5E-08 65.4 7.1 62 96-158 39-109 (639)
25 PRK05402 glycogen branching en 97.0 0.0021 4.6E-08 65.2 7.9 56 96-151 132-194 (726)
26 cd05811 CBM20_glucoamylase Glu 96.7 0.0078 1.7E-07 46.3 7.1 55 93-147 5-73 (106)
27 TIGR02402 trehalose_TreZ malto 96.6 0.0064 1.4E-07 59.9 7.8 60 97-161 1-64 (542)
28 PRK05402 glycogen branching en 96.5 0.0053 1.1E-07 62.4 6.8 54 96-151 29-87 (726)
29 cd05817 CBM20_DSP Dual-specifi 96.5 0.0096 2.1E-07 45.8 6.6 45 103-147 11-62 (100)
30 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.014 3E-07 44.8 7.1 44 104-147 13-64 (99)
31 cd05467 CBM20 The family 20 ca 96.4 0.012 2.6E-07 43.9 6.6 45 103-147 11-65 (96)
32 cd02853 MTHase_N_term Maltooli 96.3 0.016 3.5E-07 43.0 6.6 59 97-159 10-71 (85)
33 TIGR01515 branching_enzym alph 96.3 0.01 2.2E-07 59.2 6.9 62 96-158 29-100 (613)
34 cd05810 CBM20_alpha_MTH Glucan 96.0 0.031 6.8E-07 43.0 6.9 44 104-147 14-64 (97)
35 cd05807 CBM20_CGTase CGTase, C 95.9 0.033 7.1E-07 42.8 6.6 54 94-147 2-70 (101)
36 PF03423 CBM_25: Carbohydrate 95.3 0.084 1.8E-06 40.0 6.8 54 96-149 3-70 (87)
37 TIGR02104 pulA_typeI pullulana 94.7 0.087 1.9E-06 52.5 6.9 62 97-159 21-93 (605)
38 PF11806 DUF3327: Domain of un 94.3 0.29 6.3E-06 39.4 7.9 85 95-179 2-118 (122)
39 cd05815 CBM20_DPE2_repeat1 Dis 94.1 0.14 3E-06 39.1 5.6 44 104-147 12-65 (101)
40 cd05806 CBM20_laforin Laforin 94.0 0.31 6.8E-06 39.0 7.6 50 98-147 8-74 (112)
41 PRK10439 enterobactin/ferric e 92.8 0.57 1.2E-05 44.8 8.6 89 91-179 35-167 (411)
42 PLN02960 alpha-amylase 92.8 0.1 2.2E-06 54.7 3.8 51 98-148 132-198 (897)
43 PLN02316 synthase/transferase 92.5 0.9 1.9E-05 48.6 10.2 74 91-168 325-413 (1036)
44 TIGR02100 glgX_debranch glycog 92.3 0.3 6.5E-06 49.8 6.3 53 97-151 16-75 (688)
45 PLN02316 synthase/transferase 92.1 0.43 9.3E-06 51.0 7.3 62 95-156 154-228 (1036)
46 PLN02950 4-alpha-glucanotransf 90.9 1.8 3.9E-05 45.8 10.3 67 91-157 149-232 (909)
47 TIGR02102 pullulan_Gpos pullul 90.7 0.61 1.3E-05 50.2 6.8 62 97-158 329-406 (1111)
48 PLN02950 4-alpha-glucanotransf 89.0 2.3 4.9E-05 45.0 9.3 55 93-147 7-74 (909)
49 cd02857 CD_pullulan_degrading_ 87.9 3 6.4E-05 31.6 7.1 53 95-147 18-79 (116)
50 PRK03705 glycogen debranching 87.9 1.1 2.4E-05 45.6 6.0 53 97-151 21-78 (658)
51 TIGR02103 pullul_strch alpha-1 87.5 2.4 5.3E-05 44.8 8.4 64 96-160 136-215 (898)
52 PF01357 Pollen_allerg_1: Poll 86.6 2 4.3E-05 32.2 5.3 60 92-154 11-77 (82)
53 COG3794 PetE Plastocyanin [Ene 83.2 4.2 9E-05 33.5 6.2 51 93-145 60-112 (128)
54 PRK14510 putative bifunctional 82.0 4.3 9.2E-05 44.3 7.4 54 96-151 24-84 (1221)
55 PLN02877 alpha-amylase/limit d 80.5 4 8.6E-05 43.6 6.4 51 96-148 223-280 (970)
56 PF02903 Alpha-amylase_N: Alph 79.0 4.7 0.0001 31.6 5.0 65 92-156 20-99 (120)
57 PLN03244 alpha-amylase; Provis 74.2 3.9 8.4E-05 43.0 4.1 54 95-148 132-201 (872)
58 KOG0470 1,4-alpha-glucan branc 62.9 5.7 0.00012 41.2 2.6 39 97-135 115-157 (757)
59 TIGR02657 amicyanin amicyanin. 58.9 29 0.00063 25.4 5.2 50 94-144 18-69 (83)
60 TIGR02375 pseudoazurin pseudoa 56.8 48 0.001 26.5 6.5 50 93-144 21-71 (116)
61 PRK10785 maltodextrin glucosid 53.1 48 0.001 33.3 7.2 58 93-150 19-87 (598)
62 TIGR03102 halo_cynanin halocya 48.7 65 0.0014 25.7 6.1 50 93-144 48-99 (115)
63 KOG0045 Cytosolic Ca2+-depende 46.2 18 0.0004 36.7 3.1 26 137-162 115-143 (612)
64 PF03422 CBM_6: Carbohydrate b 44.8 26 0.00056 26.8 3.1 20 130-149 91-110 (125)
65 PF13473 Cupredoxin_1: Cupredo 41.4 40 0.00086 25.5 3.7 48 92-144 40-91 (104)
66 TIGR03503 conserved hypothetic 37.8 60 0.0013 31.3 5.0 39 110-150 153-195 (374)
67 PF03370 CBM_21: Putative phos 36.8 1E+02 0.0023 24.0 5.5 58 93-150 19-99 (113)
68 PF11896 DUF3416: Domain of un 36.0 48 0.001 28.8 3.7 39 115-154 55-99 (187)
69 KOG1263 Multicopper oxidases [ 35.0 25 0.00055 35.4 2.1 35 128-162 98-137 (563)
70 PLN00115 pollen allergen group 33.1 1.5E+02 0.0032 24.1 5.9 51 102-154 44-98 (118)
71 smart00606 CBD_IV Cellulose Bi 32.2 48 0.001 25.6 2.9 19 131-149 100-118 (129)
72 PLN03023 Expansin-like B1; Pro 31.4 1.1E+02 0.0024 27.9 5.4 49 96-148 163-216 (247)
73 PF14347 DUF4399: Domain of un 29.1 87 0.0019 23.9 3.7 31 128-159 51-81 (87)
74 PF01491 Frataxin_Cyay: Fratax 27.8 63 0.0014 25.4 2.8 24 132-156 62-86 (109)
75 PF07495 Y_Y_Y: Y_Y_Y domain; 26.3 69 0.0015 21.7 2.6 22 134-155 34-58 (66)
76 cd00503 Frataxin Frataxin is a 23.8 44 0.00096 26.3 1.3 19 137-156 65-83 (105)
77 PRK00446 cyaY frataxin-like pr 22.9 50 0.0011 26.1 1.4 32 121-156 48-82 (105)
78 TIGR03422 mito_frataxin fratax 22.5 56 0.0012 25.5 1.6 18 138-156 66-83 (97)
79 PF08308 PEGA: PEGA domain; I 20.9 2.6E+02 0.0056 19.3 4.7 40 99-149 6-45 (71)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.94 E-value=1.5e-26 Score=172.35 Aligned_cols=78 Identities=50% Similarity=0.858 Sum_probs=75.0
Q ss_pred eEEEEEecCCCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEEE
Q 027175 95 VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLD 172 (227)
Q Consensus 95 vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL~ 172 (227)
+||+|+|.++|++|+|+|+|++|+..++|.|+++.|++++.||+|.|+|||+|||+|++||++|++.|++|+.||+|+
T Consensus 2 ~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 2 VPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred eEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 799999999999999999999999879999987779999999999999999999999999999999999999999984
No 2
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.7e-22 Score=183.21 Aligned_cols=128 Identities=34% Similarity=0.521 Sum_probs=112.8
Q ss_pred CCCCCCCccCCCcCCCCCCCCCcccccchhhhhh-hhhhcccccCcceEEEEEecCCCceEEEEecCCCCCCCcCccccC
Q 027175 49 AFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERS-MAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLG 127 (227)
Q Consensus 49 ~~~~p~~f~pq~p~~p~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~ 127 (227)
......+|.|+.+..++++ +.+.....+.|.+. +..+.......++||+|+|..+++.|+|+|+|+||+.+++|.++.
T Consensus 34 ~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~ 112 (289)
T KOG1616|consen 34 KIPSNSGFSPDDPDPPSTR-DEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG 112 (289)
T ss_pred ccccccccCCcCCCCCcCc-ccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccccccccceecC
Confidence 3333337899999999998 77767777888873 445666777889999999999999999999999999999999987
Q ss_pred Cc---EEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEEEcCCCc
Q 027175 128 KD---FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAG 177 (227)
Q Consensus 128 ~~---f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL~V~d~~ 177 (227)
+. |++++.|++|.|+|||+|||+|++|++.|+++|..|+.||+|.|.+..
T Consensus 113 ~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~ 165 (289)
T KOG1616|consen 113 KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD 165 (289)
T ss_pred CCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence 65 999999999999999999999999999999999999999999999765
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.79 E-value=4.7e-19 Score=131.90 Aligned_cols=76 Identities=28% Similarity=0.462 Sum_probs=68.2
Q ss_pred eEEEEEecC-CCceEEEEecCCCCCCCcCccccC-CcEEEEEeCCCeeEEEEEEEcCeec-cCCCCCe-eeCCCCCeeEE
Q 027175 95 VAAAITWSL-GGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPSGVYHYRFIVDECLR-YAPDVPW-ECDDSGNAYNV 170 (227)
Q Consensus 95 vpv~f~W~~-gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~Lp~G~Y~YKFiVDG~W~-~Dp~~P~-~~D~~G~~NNv 170 (227)
++++|+|.. .+++|+|+|+|++|+ ..+|+|.+ +.|++++.|++|.|+|||+|||.|. +||.++. ..|..|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 589999877 569999999999998 57999976 7999999999999999999999999 9999985 56788999998
Q ss_pred E
Q 027175 171 L 171 (227)
Q Consensus 171 L 171 (227)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=2.5e-11 Score=91.35 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=62.0
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEE-eCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEE
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMK-MLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVL 171 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l-~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL 171 (227)
.++|+ |...|++|.|.|+|++|.. .+|+|.+ +.|++++ .|.+|.|.|+|+|||.++.||..+...-..+...|++
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 46776 8889999999999998875 7899875 6899998 4888999999999999999999997764445544543
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.84 E-value=1.7e-08 Score=72.21 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=56.6
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEeCCC-eeEEEEEEEcCeeccCCCCCeeeCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPS-GVYHYRFIVDECLRYAPDVPWECDD 163 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~Lp~-G~Y~YKFiVDG~W~~Dp~~P~~~D~ 163 (227)
.+.|+ |...++.|.|.+.|++|....+|.+.. +.|++.+.+.. +.|.|+|+|||.|..++.++...+.
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~ 75 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG 75 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence 46777 556789999999999976678998865 68999999988 9999999999999999887555443
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.52 E-value=3.9e-07 Score=70.85 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=48.4
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEeC--------CCe-eEEEEEEE-cCee--ccCCCCCee
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKML--------PSG-VYHYRFIV-DECL--RYAPDVPWE 160 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~L--------p~G-~Y~YKFiV-DG~W--~~Dp~~P~~ 160 (227)
-++|+ |...|++|+|+|+||+|+.. .+|.|. .+.|+++++. +.| .|.|++.. ||+| +.||-.-.+
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~ 85 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV 85 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence 35675 99999999999999999864 689986 4689999764 455 46666666 7876 466655433
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.49 E-value=1.6e-07 Score=68.96 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=44.8
Q ss_pred EEEEE-ecCCCceEEEEecCCC-CCCC-cCccc--cCCcEEEEEe--CCCeeEEEEEEEcCee
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDN-WENV-DPLWR--LGKDFVIMKM--LPSGVYHYRFIVDECL 151 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnn-W~~~-ipL~k--s~~~f~~~l~--Lp~G~Y~YKFiVDG~W 151 (227)
-+.|+ |...|++|.|.+.|++ |... ++|++ .++.|++++. |++|.+.|+|+|||..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 56676 9999999999999999 8754 68994 4679999998 8889888999988754
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.87 E-value=4.8e-05 Score=58.10 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=47.7
Q ss_pred EEE-EecCCCceEEEEecCCCCC-----CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCe-----eccCCCCCeee
Q 027175 97 AAI-TWSLGGKQVAVTGSWDNWE-----NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDEC-----LRYAPDVPWEC 161 (227)
Q Consensus 97 v~f-~W~~gakeV~V~GSFnnW~-----~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~-----W~~Dp~~P~~~ 161 (227)
+.| .|...|++|.|.. |++|. ..++|.+. ++.|++.+. +.+|.+ |+|.|+|. .+.||-...+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence 567 4999999999998 88886 45689884 579999886 555654 88999876 67777665443
No 9
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.64 E-value=0.00051 Score=51.94 Aligned_cols=50 Identities=20% Similarity=0.592 Sum_probs=37.2
Q ss_pred EEEE-ecCCCceEEEEecCCCCCC-CcCcccc--CCcEEEEEe-CCCeeEEEEEEE
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWEN-VDPLWRL--GKDFVIMKM-LPSGVYHYRFIV 147 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~-~ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiV 147 (227)
++|+ |...|+.|.|.++|++|.. ..+|.+. .+.|.+.+. +++|.+ |+|.|
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~-Y~~~v 77 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGEL-YKYEI 77 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCE-EEEEE
Confidence 4554 9999999999999999964 3589874 458998885 666643 55555
No 10
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.58 E-value=0.00028 Score=53.02 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=40.3
Q ss_pred EEEEEecC---CCceEEEEec---CCCCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175 96 AAAITWSL---GGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 96 pv~f~W~~---gakeV~V~GS---FnnW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
+++|.-.. .|..|+|+|+ +.+|+.. ++|...+ +.|++++.||.+ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 45555432 5789999996 7899854 5887764 589999999987 59999997
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.57 E-value=0.00022 Score=54.20 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=43.2
Q ss_pred eEEEEEecC---CCceEEEEecCC---CCCC--CcCccccC-----CcEEEEEeCCCe-eEEEEEEE
Q 027175 95 VAAAITWSL---GGKQVAVTGSWD---NWEN--VDPLWRLG-----KDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 95 vpv~f~W~~---gakeV~V~GSFn---nW~~--~ipL~ks~-----~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
+.|+|.-.. .+..|+|+||.. +|+. .++|.... ..|++++.||.+ .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 567776643 589999999997 8996 46888752 589999999998 59999999
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.00015 Score=72.69 Aligned_cols=62 Identities=15% Similarity=0.433 Sum_probs=48.3
Q ss_pred eEEEEE-ecCCCceEEEEecCCCCCCC-cCccc--cCCcEEEEEe-CCCeeEEEEEEEcCee-----ccCCCC
Q 027175 95 VAAAIT-WSLGGKQVAVTGSWDNWENV-DPLWR--LGKDFVIMKM-LPSGVYHYRFIVDECL-----RYAPDV 157 (227)
Q Consensus 95 vpv~f~-W~~gakeV~V~GSFnnW~~~-ipL~k--s~~~f~~~l~-Lp~G~Y~YKFiVDG~W-----~~Dp~~ 157 (227)
..|.|+ |...++.|.|.|+||+|... .+|.. ..+.|++++. +++| +.|||.|++.. +.||-.
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a 107 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYA 107 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchh
Confidence 467776 99999999999999999973 24432 2368999998 9999 89999996543 566543
No 13
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.44 E-value=0.00041 Score=71.01 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=45.9
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCccccC-CcEEEEEe-------CCCeeEEEEEEEc---Ce--eccCCCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRLG-KDFVIMKM-------LPSGVYHYRFIVD---EC--LRYAPDVP 158 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks~-~~f~~~l~-------Lp~G~Y~YKFiVD---G~--W~~Dp~~P 158 (227)
-|+|+ |...|++|+|+|+||+|... .+|+|.+ +.|++.++ ++.|. .|||.|. |. .+.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence 46675 99999999999999999864 5899864 69999886 34453 6777773 54 35566443
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.25 E-value=0.00091 Score=66.68 Aligned_cols=62 Identities=21% Similarity=0.435 Sum_probs=46.2
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEe-CCCe-eEEEEEEE-cCee--ccCCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSG-VYHYRFIV-DECL--RYAPDV 157 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~-Lp~G-~Y~YKFiV-DG~W--~~Dp~~ 157 (227)
-|+|+ |...|++|+|+|+||+|... .+|.|. .+.|++++. +.+| .|.|++.+ ||.| +.||..
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya 108 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFA 108 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCce
Confidence 56775 88899999999999999864 589885 569999987 4455 57777654 5665 445544
No 15
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.20 E-value=0.0012 Score=50.82 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=40.3
Q ss_pred EEE-EecCCCceEEEEecCCCCC--CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCe
Q 027175 97 AAI-TWSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDEC 150 (227)
Q Consensus 97 v~f-~W~~gakeV~V~GSFnnW~--~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~ 150 (227)
+.| .|...|++|.|.. |++|. ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 556 4999999999998 66664 34689876 479999884 66665 799999994
No 16
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.20 E-value=0.00089 Score=68.34 Aligned_cols=62 Identities=19% Similarity=0.502 Sum_probs=47.2
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEe-CCCeeEEEEEEE---cCeec--cCCCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSGVYHYRFIV---DECLR--YAPDVP 158 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiV---DG~W~--~Dp~~P 158 (227)
-|.|+ |...|++|.|+|+||+|..+ .+|.+. ++.|++.++ +..|. .|||.| ||.+. .||-.-
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~ 209 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVAR 209 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcce
Confidence 46785 99999999999999999864 588764 569999884 67774 577777 78653 566543
No 17
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.18 E-value=0.0049 Score=46.88 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=43.2
Q ss_pred eEEEEEecC---CCceEEEEecC---CCCCCCcCccccCCcEEEEEeCCCe-eEEEEEEE
Q 027175 95 VAAAITWSL---GGKQVAVTGSW---DNWENVDPLWRLGKDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 95 vpv~f~W~~---gakeV~V~GSF---nnW~~~ipL~ks~~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
+.++|+-.+ -|..++|+|+- -+|+...+|.-..+.|++.+.||.+ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 456666554 47899999986 5898777887777789999999987 59999999
No 18
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.15 E-value=0.00092 Score=71.54 Aligned_cols=60 Identities=17% Similarity=0.432 Sum_probs=46.2
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCeeEEEEEEEc---Cee--ccCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIVD---ECL--RYAPD 156 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD---G~W--~~Dp~ 156 (227)
-|.|+ |...|+.|.|+|+||+|..+ .+|.+. .+.|++.++ +.+|. .|||.|+ |.| +.||-
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPy 708 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPL 708 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcc
Confidence 56775 99999999999999999865 588873 479999885 77886 6888884 544 44553
No 19
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.13 E-value=0.0014 Score=51.59 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=41.7
Q ss_pred EEE-EecCCCceEEEEecCCCCC---C--CcCcccc----CCcEEEEEe-CCCeeEEEEEEEcCeec
Q 027175 97 AAI-TWSLGGKQVAVTGSWDNWE---N--VDPLWRL----GKDFVIMKM-LPSGVYHYRFIVDECLR 152 (227)
Q Consensus 97 v~f-~W~~gakeV~V~GSFnnW~---~--~ipL~ks----~~~f~~~l~-Lp~G~Y~YKFiVDG~W~ 152 (227)
+.| .|...|++|.|.. |++|. . +++|.+. ++.|++.+. +..|. .|+|.|||.|.
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 556 4999999999999 88886 2 3577654 479998875 67786 69999999754
No 20
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.08 E-value=0.0017 Score=51.59 Aligned_cols=46 Identities=35% Similarity=0.573 Sum_probs=38.5
Q ss_pred CCceEEEEec---CCCCCC--CcCcccc--C-CcEEEEEeCCCe-eEEEEEEEcC
Q 027175 104 GGKQVAVTGS---WDNWEN--VDPLWRL--G-KDFVIMKMLPSG-VYHYRFIVDE 149 (227)
Q Consensus 104 gakeV~V~GS---FnnW~~--~ipL~ks--~-~~f~~~l~Lp~G-~Y~YKFiVDG 149 (227)
.+..|+|+|+ +.+|+. ..+|.+. . +.|++.+.||.+ .++|||++..
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 5789999999 889984 3588875 3 579999999998 7999999943
No 21
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.05 E-value=0.0045 Score=47.56 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=41.1
Q ss_pred ceEEEEEecC----CCceEEEEe---cCCCCCCCc-Ccccc----CCcEEEEEeCCCee-EEEEEEE
Q 027175 94 QVAAAITWSL----GGKQVAVTG---SWDNWENVD-PLWRL----GKDFVIMKMLPSGV-YHYRFIV 147 (227)
Q Consensus 94 ~vpv~f~W~~----gakeV~V~G---SFnnW~~~i-pL~ks----~~~f~~~l~Lp~G~-Y~YKFiV 147 (227)
.|+|+|.-.. .+.+|+|+| ++.+|+... +|... ...|++.+.||.|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888632 578999999 567998642 34332 35799999999985 9999999
No 22
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.03 E-value=0.0087 Score=46.44 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=42.3
Q ss_pred ceEEEEEecC-----CCceEEEEecC---CCCCCCc-----Ccccc-CCcEEEEEeCCCee-EEEEEEE
Q 027175 94 QVAAAITWSL-----GGKQVAVTGSW---DNWENVD-----PLWRL-GKDFVIMKMLPSGV-YHYRFIV 147 (227)
Q Consensus 94 ~vpv~f~W~~-----gakeV~V~GSF---nnW~~~i-----pL~ks-~~~f~~~l~Lp~G~-Y~YKFiV 147 (227)
.+||+|+-.. -|..|+|+|+- -+|+... +|... ...|++.+.||.|. .+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3899999863 47899999985 4898632 56544 35899999999985 9999998
No 23
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.02 E-value=0.0025 Score=48.34 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=40.4
Q ss_pred eEEEEEecC----CCceEEEEecC---CCCCCCcCccccC-CcEEEEEeCCCee-EEEEEEE
Q 027175 95 VAAAITWSL----GGKQVAVTGSW---DNWENVDPLWRLG-KDFVIMKMLPSGV-YHYRFIV 147 (227)
Q Consensus 95 vpv~f~W~~----gakeV~V~GSF---nnW~~~ipL~ks~-~~f~~~l~Lp~G~-Y~YKFiV 147 (227)
|+++|+-.+ ++..|+|+|+- -+|+...+|.... ..|++.+.||.+. ++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 345665433 45778899975 4788778897654 5799999999986 9999998
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.01 E-value=0.0016 Score=65.44 Aligned_cols=62 Identities=23% Similarity=0.502 Sum_probs=46.5
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCccccC-CcEEEEEe-CCCeeEEEEEEEcC---ee--ccCCCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE---CL--RYAPDVP 158 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG---~W--~~Dp~~P 158 (227)
-|.|+ |...|++|.|+|+||+|... .+|.|.+ +.|++.++ +..| ..|||.|++ .+ +.||-.-
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~ 109 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGS 109 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceE
Confidence 36775 99999999999999999864 5898864 68999886 4455 468888865 33 5665543
No 25
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.00 E-value=0.0021 Score=65.21 Aligned_cols=56 Identities=18% Similarity=0.522 Sum_probs=43.1
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCe-eEEEEEEEc-Cee
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSG-VYHYRFIVD-ECL 151 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G-~Y~YKFiVD-G~W 151 (227)
-|+|+ |...|++|.|+|+||+|... .+|+|. .+.|++.+. +++| .|.|++..+ |.+
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~ 194 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGEL 194 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence 46776 88899999999999999864 589986 368998875 6677 577766664 444
No 26
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.68 E-value=0.0078 Score=46.31 Aligned_cols=55 Identities=25% Similarity=0.475 Sum_probs=42.2
Q ss_pred cceEEEEEecC---CCceEEEEecCC---CCCCC--cCcccc-----CCcEEEEEeCCCee-EEEEEEE
Q 027175 93 KQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRL-----GKDFVIMKMLPSGV-YHYRFIV 147 (227)
Q Consensus 93 ~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks-----~~~f~~~l~Lp~G~-Y~YKFiV 147 (227)
..+++.|.-.+ -|..|+|+|+-. +|+.. ++|... +..|++.+.||.+. ++|||+|
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 34777776543 588999999864 79863 578653 35799999999885 9999997
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.62 E-value=0.0064 Score=59.89 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEe-CCCeeEEEEEEEcC-eeccCCCCCeee
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE-CLRYAPDVPWEC 161 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG-~W~~Dp~~P~~~ 161 (227)
|+|+ |...|++|.|... + ...+|+|.+ +.|++++. +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4564 9999999999973 3 247899875 59999986 7778 789999999 778888776543
No 28
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.55 E-value=0.0053 Score=62.37 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=40.5
Q ss_pred EEEE-EecCCCceEEEEecCCCCCCCcCcccc--CCcEEEEEeCCCeeEEEEEEE--cCee
Q 027175 96 AAAI-TWSLGGKQVAVTGSWDNWENVDPLWRL--GKDFVIMKMLPSGVYHYRFIV--DECL 151 (227)
Q Consensus 96 pv~f-~W~~gakeV~V~GSFnnW~~~ipL~ks--~~~f~~~l~Lp~G~Y~YKFiV--DG~W 151 (227)
=|+| +|...|++|.|+|+||+ ....+|+|. .+.|++.+++..|.. |||.| ||.+
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~ 87 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGE 87 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCce
Confidence 3456 59999999999999997 344689974 468999988777742 55555 7853
No 29
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.52 E-value=0.0096 Score=45.82 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCceEEEEec---CCCCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175 103 LGGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 103 ~gakeV~V~GS---FnnW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
.-|..|+|+|+ .-+|+.. ++|...+ ..|++.+.||.+ .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 35789999999 5689854 5787654 489999999987 59999998
No 30
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.46 E-value=0.014 Score=44.81 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=36.1
Q ss_pred CCceEEEEecC---CCCCC--CcCccccC-CcEEEEEeCCCe--eEEEEEEE
Q 027175 104 GGKQVAVTGSW---DNWEN--VDPLWRLG-KDFVIMKMLPSG--VYHYRFIV 147 (227)
Q Consensus 104 gakeV~V~GSF---nnW~~--~ipL~ks~-~~f~~~l~Lp~G--~Y~YKFiV 147 (227)
.+..|+|+|+- .+|+. .++|.... ..|++.+.||++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 57899999985 58985 35888764 479999999886 58999998
No 31
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.45 E-value=0.012 Score=43.91 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=37.0
Q ss_pred CCCceEEEEecCC---CCCC--CcCccccC--CcEEEEEeCCC--e-eEEEEEEE
Q 027175 103 LGGKQVAVTGSWD---NWEN--VDPLWRLG--KDFVIMKMLPS--G-VYHYRFIV 147 (227)
Q Consensus 103 ~gakeV~V~GSFn---nW~~--~ipL~ks~--~~f~~~l~Lp~--G-~Y~YKFiV 147 (227)
..|..|+|+|+.. +|+. .++|...+ +.|++.+.||. + .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 3588999999975 8884 46888664 68999999998 7 59999998
No 32
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.32 E-value=0.016 Score=43.00 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=42.9
Q ss_pred EEEE-ecCCCceEEEEecCCCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEEc-CeeccCCCCCe
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVD-ECLRYAPDVPW 159 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiVD-G~W~~Dp~~P~ 159 (227)
+.|+ |...|++|.|.... |. .++|.|. ++.|++++..-+|. .|+|.|+ +..+.||....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 5565 99999999999643 54 4789876 46899988633665 4777776 56788887654
No 33
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.27 E-value=0.01 Score=59.17 Aligned_cols=62 Identities=18% Similarity=0.434 Sum_probs=46.3
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCeeEEEEEEEc---Ce--eccCCCCC
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIVD---EC--LRYAPDVP 158 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD---G~--W~~Dp~~P 158 (227)
-|+|+ |...|++|.|+|+||+|... .+|.+. .+.|++.+. +.+|. .|||.|+ |. .+.||-.-
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 46675 99999999999999999764 489875 468998886 45565 5888884 54 46666543
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.98 E-value=0.031 Score=42.99 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCceEEEEecCC---CCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175 104 GGKQVAVTGSWD---NWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 104 gakeV~V~GSFn---nW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
-+..|+|+|+-. +|+.. ++|.... ..|++.+.||.| ..+|||++
T Consensus 14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 14 LGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 578999999865 89853 5676553 479999999998 59999988
No 35
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=95.87 E-value=0.033 Score=42.76 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=40.1
Q ss_pred ceEEEEEec-C---CCceEEEEecC---CCCCCCc--Ccc-c----cCCcEEEEEeCCCee-EEEEEEE
Q 027175 94 QVAAAITWS-L---GGKQVAVTGSW---DNWENVD--PLW-R----LGKDFVIMKMLPSGV-YHYRFIV 147 (227)
Q Consensus 94 ~vpv~f~W~-~---gakeV~V~GSF---nnW~~~i--pL~-k----s~~~f~~~l~Lp~G~-Y~YKFiV 147 (227)
.++++|.-. . -|..|+|+|+- -+|+... .|. . ....|++.+.||.|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 377888864 2 47899999985 4898643 232 2 234799999999985 9999998
No 36
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.26 E-value=0.084 Score=40.03 Aligned_cols=54 Identities=17% Similarity=0.394 Sum_probs=35.8
Q ss_pred EEEEEecC------CCceEEEEecCCCCCCC--cCccccC-----CcEEEEEeCCCeeEEEEEEE-cC
Q 027175 96 AAAITWSL------GGKQVAVTGSWDNWENV--DPLWRLG-----KDFVIMKMLPSGVYHYRFIV-DE 149 (227)
Q Consensus 96 pv~f~W~~------gakeV~V~GSFnnW~~~--ipL~ks~-----~~f~~~l~Lp~G~Y~YKFiV-DG 149 (227)
+|+|.|+. ++.+|+|.+.|++|+.. +.|.+.. +.|+++|.+|..-|...|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 45666632 47899999999999865 4677653 67999999999989999998 76
No 37
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.67 E-value=0.087 Score=52.50 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=43.8
Q ss_pred EEEE-ecCCCceEEEEecCCCCCC-----CcCcccc-CCcEEEEEe-CCCee-EEEEEEEcCe--eccCCCCCe
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRL-GKDFVIMKM-LPSGV-YHYRFIVDEC--LRYAPDVPW 159 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~-----~ipL~ks-~~~f~~~l~-Lp~G~-Y~YKFiVDG~--W~~Dp~~P~ 159 (227)
|.|+ |...|++|.|.+ |++|.. .++|.+. ++.|++.+. +..|. |.|+...+|. ++.||-...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence 6775 999999999998 888853 4588875 469999986 55664 4444444564 478876543
No 38
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.26 E-value=0.29 Score=39.42 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=54.6
Q ss_pred eEEEEEec----CCCceEEEEecCCCCCCC-----cCccccCC--cEEEEEeCCCe-eEEEEEEEcCe------------
Q 027175 95 VAAAITWS----LGGKQVAVTGSWDNWENV-----DPLWRLGK--DFVIMKMLPSG-VYHYRFIVDEC------------ 150 (227)
Q Consensus 95 vpv~f~W~----~gakeV~V~GSFnnW~~~-----ipL~ks~~--~f~~~l~Lp~G-~Y~YKFiVDG~------------ 150 (227)
.-|+|.|. .....|.|-++.|+.+.. ..|+|-.+ +|..++.||.. +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~ 81 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA 81 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence 35899999 456789999999998643 47888754 79999999987 68899997432
Q ss_pred ----eccCCCCCeee-CC---CCCeeEEEEcCCCccc
Q 027175 151 ----LRYAPDVPWEC-DD---SGNAYNVLDLQPAGCL 179 (227)
Q Consensus 151 ----W~~Dp~~P~~~-D~---~G~~NNvL~V~d~~~~ 179 (227)
-+.||-||... .. .|...++|+..+..++
T Consensus 82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~Ap~q 118 (122)
T PF11806_consen 82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPDAPPQ 118 (122)
T ss_dssp HGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS---
T ss_pred HHhccCCCCCCCCCCCCCccccccccCceeCCCCccC
Confidence 36789888653 33 4889999998765443
No 39
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.12 E-value=0.14 Score=39.13 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCceEEEEecC---CCCCCC--cCcccc----CCcEEEEEeCCCe-eEEEEEEE
Q 027175 104 GGKQVAVTGSW---DNWENV--DPLWRL----GKDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 104 gakeV~V~GSF---nnW~~~--ipL~ks----~~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
-|..|+|+|+- -+|+.. ++|... ...|++.+.||.+ .++|||+|
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 47899999985 478753 577532 2369999999987 49999999
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.03 E-value=0.31 Score=39.00 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=38.0
Q ss_pred EEEecCCCceEEEEecC---CCCCCC--cCcccc-------C-CcEEEEEeCCCe----eEEEEEEE
Q 027175 98 AITWSLGGKQVAVTGSW---DNWENV--DPLWRL-------G-KDFVIMKMLPSG----VYHYRFIV 147 (227)
Q Consensus 98 ~f~W~~gakeV~V~GSF---nnW~~~--ipL~ks-------~-~~f~~~l~Lp~G----~Y~YKFiV 147 (227)
+.+....+.+|+|+|+- -+|+.. ++|... . ..|.+.+.|+.+ .++|||+.
T Consensus 8 ~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 8 VLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 33566788999999984 589854 466643 2 369999999986 69999998
No 41
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.83 E-value=0.57 Score=44.79 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=60.9
Q ss_pred cCcceEEEEEecC-CC-------ceEEEE--ecCC--CCCCCcCccccCC--cEEEEEeCCCe-eEEEEEEEc-------
Q 027175 91 YEKQVAAAITWSL-GG-------KQVAVT--GSWD--NWENVDPLWRLGK--DFVIMKMLPSG-VYHYRFIVD------- 148 (227)
Q Consensus 91 ~~~~vpv~f~W~~-ga-------keV~V~--GSFn--nW~~~ipL~ks~~--~f~~~l~Lp~G-~Y~YKFiVD------- 148 (227)
....+-|+|-|.. .+ +.|+|. |.-| .+.....|+|-.+ +|..++.||.. +-.|+|+++
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccc
Confidence 3455899999997 33 258874 2222 2333347999764 79999999998 688999992
Q ss_pred ---------------------CeeccCCCCCeee-CCCCCeeEEEEcCCCccc
Q 027175 149 ---------------------ECLRYAPDVPWEC-DDSGNAYNVLDLQPAGCL 179 (227)
Q Consensus 149 ---------------------G~W~~Dp~~P~~~-D~~G~~NNvL~V~d~~~~ 179 (227)
+.-+.||.+|... +..|+..|+|++.+..++
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~~ 167 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPLQ 167 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCCC
Confidence 1124788888654 445665799999865443
No 42
>PLN02960 alpha-amylase
Probab=92.83 E-value=0.1 Score=54.66 Aligned_cols=51 Identities=20% Similarity=0.504 Sum_probs=38.7
Q ss_pred EEEecCCCceEEEEecCCCCCCCc-Ccc-----ccC-CcEEEEEe--CCCee-------EEEEEEEc
Q 027175 98 AITWSLGGKQVAVTGSWDNWENVD-PLW-----RLG-KDFVIMKM--LPSGV-------YHYRFIVD 148 (227)
Q Consensus 98 ~f~W~~gakeV~V~GSFnnW~~~i-pL~-----ks~-~~f~~~l~--Lp~G~-------Y~YKFiVD 148 (227)
-..|..+|..++|+|+||||..+. .|. |++ +.|.++|+ |..|+ -+|.|..|
T Consensus 132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 346999999999999999999865 444 333 57998874 77772 25888875
No 43
>PLN02316 synthase/transferase
Probab=92.48 E-value=0.9 Score=48.61 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=52.2
Q ss_pred cCcceEEEEEecC------CCceEEEEecCCCCCCCc----Ccccc----CCcEEEEEeCCCeeEEEEEEE-cCeeccCC
Q 027175 91 YEKQVAAAITWSL------GGKQVAVTGSWDNWENVD----PLWRL----GKDFVIMKMLPSGVYHYRFIV-DECLRYAP 155 (227)
Q Consensus 91 ~~~~vpv~f~W~~------gakeV~V~GSFnnW~~~i----pL~ks----~~~f~~~l~Lp~G~Y~YKFiV-DG~W~~Dp 155 (227)
+..+-++++-|+. ++.+|+|.|.||+|+... .|.++ +..|.+++.+|..-|-.-|+. ||. |
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~ 400 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----P 400 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----c
Confidence 3556788888873 468999999999998532 33332 336899999999999999998 784 2
Q ss_pred CCCeeeCCCCCee
Q 027175 156 DVPWECDDSGNAY 168 (227)
Q Consensus 156 ~~P~~~D~~G~~N 168 (227)
......|.+++.+
T Consensus 401 ~~~~~yDNn~~~D 413 (1036)
T PLN02316 401 GNARNYDNNGRQD 413 (1036)
T ss_pred ccccccccCCCcc
Confidence 3334445544433
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.31 E-value=0.3 Score=49.81 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=39.4
Q ss_pred EEEE-ecCCCceEEEEecCCCCCC----CcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWEN----VDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL 151 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~----~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~W 151 (227)
|.|+ |...|+.|.|. -|++|.. .++|.+. +++|.+.+. +..|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 5675 88999999986 5565542 3578765 569999985 67777 4999999843
No 45
>PLN02316 synthase/transferase
Probab=92.13 E-value=0.43 Score=50.96 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=47.5
Q ss_pred eEEEEEecC------CCceEEEEecCCCCCCC---cCccccC---CcEEEEEeCCCeeEEEEEEE-cCeeccCCC
Q 027175 95 VAAAITWSL------GGKQVAVTGSWDNWENV---DPLWRLG---KDFVIMKMLPSGVYHYRFIV-DECLRYAPD 156 (227)
Q Consensus 95 vpv~f~W~~------gakeV~V~GSFnnW~~~---ipL~ks~---~~f~~~l~Lp~G~Y~YKFiV-DG~W~~Dp~ 156 (227)
-++.+-|+. +..+|.|.|.||+|... ..|.|++ +.|++.+.+|+.-|..-|+. ||.-.+|.+
T Consensus 154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN 228 (1036)
T PLN02316 154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNN 228 (1036)
T ss_pred CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccC
Confidence 456666654 34789999999999864 3777763 36899999999999999998 886555543
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=90.86 E-value=1.8 Score=45.76 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=48.0
Q ss_pred cCcceEEEEEecC----CCceEEEEecC---CCCCCC--cCcccc-CCcEEEEEeCCCe--eEEEEEEE---cC--eecc
Q 027175 91 YEKQVAAAITWSL----GGKQVAVTGSW---DNWENV--DPLWRL-GKDFVIMKMLPSG--VYHYRFIV---DE--CLRY 153 (227)
Q Consensus 91 ~~~~vpv~f~W~~----gakeV~V~GSF---nnW~~~--ipL~ks-~~~f~~~l~Lp~G--~Y~YKFiV---DG--~W~~ 153 (227)
....++|+|+-.. .|..|+|+|+- -+|+.. .+|... ...|++.+.||.+ ..+|||++ +| .|-.
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~ 228 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLEL 228 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEee
Confidence 3455788888533 58899999985 489854 466644 3589999999988 48999998 44 3654
Q ss_pred CCCC
Q 027175 154 APDV 157 (227)
Q Consensus 154 Dp~~ 157 (227)
.++.
T Consensus 229 g~NR 232 (909)
T PLN02950 229 GVNR 232 (909)
T ss_pred CCCc
Confidence 4443
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.69 E-value=0.61 Score=50.18 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred EEEE-ecCCCceEEEEe-cCCCCCC---CcCcccc-CCcEEEEEe-CCCe-----eEEEEEEEcC----eeccCCCCC
Q 027175 97 AAIT-WSLGGKQVAVTG-SWDNWEN---VDPLWRL-GKDFVIMKM-LPSG-----VYHYRFIVDE----CLRYAPDVP 158 (227)
Q Consensus 97 v~f~-W~~gakeV~V~G-SFnnW~~---~ipL~ks-~~~f~~~l~-Lp~G-----~Y~YKFiVDG----~W~~Dp~~P 158 (227)
+.|+ |...|++|.|+. ++++|.. .++|.+. +++|++.+. +.+| -+.|+|.|++ ..+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 5675 999999999997 4556653 5689876 469999986 4433 3688888876 456776554
No 48
>PLN02950 4-alpha-glucanotransferase
Probab=89.01 E-value=2.3 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=40.3
Q ss_pred cceEEEEEecC---CCceEEEEecCC---CCCCC--cCcccc----CCcEEEEEeCCCe-eEEEEEEE
Q 027175 93 KQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRL----GKDFVIMKMLPSG-VYHYRFIV 147 (227)
Q Consensus 93 ~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks----~~~f~~~l~Lp~G-~Y~YKFiV 147 (227)
..+.++|.-.+ -|.+|+|+|+-. +|+.. ++|.-. +..|++++.||.| ..+|||++
T Consensus 7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 44666666443 489999999874 78754 577533 2379999999987 49999995
No 49
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=87.86 E-value=3 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=35.0
Q ss_pred eEEEEEec-CCCceEEEEecCCC--CC-CCcCccccCC-----cEEEEEeCCCeeEEEEEEE
Q 027175 95 VAAAITWS-LGGKQVAVTGSWDN--WE-NVDPLWRLGK-----DFVIMKMLPSGVYHYRFIV 147 (227)
Q Consensus 95 vpv~f~W~-~gakeV~V~GSFnn--W~-~~ipL~ks~~-----~f~~~l~Lp~G~Y~YKFiV 147 (227)
+.++|+=. ...+.|.|.-.-+. +. ..++|.+.+. .|++++.++.|.+.|.|+|
T Consensus 18 v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 18 LHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred EEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 44444322 34678888654332 22 2468987642 4899999888999999999
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.85 E-value=1.1 Score=45.62 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=39.7
Q ss_pred EEEE-ecCCCceEEEEecCCCCC--CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL 151 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~--~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~W 151 (227)
|.|+ |...|++|.|.. |+++. ..++|.+. +++|++.+. +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 6675 899999999997 77653 24678765 569999885 55665 5999999853
No 51
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.52 E-value=2.4 Score=44.78 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=43.6
Q ss_pred EEEEE-ecCCCceEEEEecCCCCC--CCcCcccc--CCcEEEEEe-CCCeeEEEEEEEc------Ce----eccCCCCCe
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL--GKDFVIMKM-LPSGVYHYRFIVD------EC----LRYAPDVPW 159 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~--~~ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD------G~----W~~Dp~~P~ 159 (227)
-|+|+ |...|++|.|....++|. ..++|.+. .+.|++.+. +..|. .|+|.|+ |+ .+.||..-.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 45665 999999999996665553 23689885 579999985 44555 3677665 53 367776543
Q ss_pred e
Q 027175 160 E 160 (227)
Q Consensus 160 ~ 160 (227)
.
T Consensus 215 l 215 (898)
T TIGR02103 215 L 215 (898)
T ss_pred E
Confidence 3
No 52
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=86.59 E-value=2 Score=32.20 Aligned_cols=60 Identities=28% Similarity=0.302 Sum_probs=40.8
Q ss_pred CcceEEEEEecCCC---ceEEEEecC-CCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEE-c-CeeccC
Q 027175 92 EKQVAAAITWSLGG---KQVAVTGSW-DNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIV-D-ECLRYA 154 (227)
Q Consensus 92 ~~~vpv~f~W~~ga---keV~V~GSF-nnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiV-D-G~W~~D 154 (227)
..-..+.|...+|+ ..|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.+|+.. | |+++..
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 34467778887654 578898433 5585 59998 569998878888899999988 7 887764
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=83.15 E-value=4.2 Score=33.47 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=37.4
Q ss_pred cceEEEEEecCC-CceEEEEecCCCCCCCcCcc-ccCCcEEEEEeCCCeeEEEEE
Q 027175 93 KQVAAAITWSLG-GKQVAVTGSWDNWENVDPLW-RLGKDFVIMKMLPSGVYHYRF 145 (227)
Q Consensus 93 ~~vpv~f~W~~g-akeV~V~GSFnnW~~~ipL~-ks~~~f~~~l~Lp~G~Y~YKF 145 (227)
.+-.|+|+|... +.+|...++.+-|... .+. +-+..|+.++.- +|.|.|+=
T Consensus 60 pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 60 PGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred CCCEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEEe
Confidence 456789999997 9999999999655542 233 224578888875 89999863
No 54
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=81.95 E-value=4.3 Score=44.27 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.2
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCCC----cCcc-ccCCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWENV----DPLW-RLGKDFVIMKM-LPSGVYHYRFIVDECL 151 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~~----ipL~-ks~~~f~~~l~-Lp~G~Y~YKFiVDG~W 151 (227)
-|.|+ |...|+.|.|+ -|+.|... ++|. +.++.|.+.+. +.+|. .|+|.|+|.+
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 36775 88899999997 88888642 4664 45678988765 77887 6999999854
No 55
>PLN02877 alpha-amylase/limit dextrinase
Probab=80.52 E-value=4 Score=43.59 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=35.4
Q ss_pred EEEEE-ecCCCceEEEEecCCCCCC-----CcCccccCCcEEEEEeC-CCeeEEEEEEEc
Q 027175 96 AAAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRLGKDFVIMKML-PSGVYHYRFIVD 148 (227)
Q Consensus 96 pv~f~-W~~gakeV~V~GSFnnW~~-----~ipL~ks~~~f~~~l~L-p~G~Y~YKFiVD 148 (227)
-|.|+ |...|++|.|.- |++|.. .++|.+.+++|++.+.- ..| +.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEe
Confidence 45664 999999999984 555532 24677667899998863 345 44777775
No 56
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=79.01 E-value=4.7 Score=31.56 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=40.8
Q ss_pred CcceEEEEEec-CCCceEEEE-ecCCCC----CC-CcCccccC--C---cEEEEEeCCCeeEEEEEEE--cC-eeccCCC
Q 027175 92 EKQVAAAITWS-LGGKQVAVT-GSWDNW----EN-VDPLWRLG--K---DFVIMKMLPSGVYHYRFIV--DE-CLRYAPD 156 (227)
Q Consensus 92 ~~~vpv~f~W~-~gakeV~V~-GSFnnW----~~-~ipL~ks~--~---~f~~~l~Lp~G~Y~YKFiV--DG-~W~~Dp~ 156 (227)
...+.++|+=. +..++|.|. |+-.+| .. ..+|+|.. + -|++++.++..+..|.|.| +| ++.++..
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~~ 99 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGER 99 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeCC
Confidence 34455555543 467889885 676665 22 25788752 2 5899999999999999998 23 3444443
No 57
>PLN03244 alpha-amylase; Provisional
Probab=74.19 E-value=3.9 Score=43.02 Aligned_cols=54 Identities=19% Similarity=0.458 Sum_probs=39.4
Q ss_pred eEEEEEecCCCceEEEEecCCCCCCCcCcc------ccC-CcEEEEEe--CCCee----E---EEEEEEc
Q 027175 95 VAAAITWSLGGKQVAVTGSWDNWENVDPLW------RLG-KDFVIMKM--LPSGV----Y---HYRFIVD 148 (227)
Q Consensus 95 vpv~f~W~~gakeV~V~GSFnnW~~~ipL~------ks~-~~f~~~l~--Lp~G~----Y---~YKFiVD 148 (227)
.-+.-.|..||.--+|+|+||||..+.-.. |++ +.|.++|+ |..|+ | +|.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 344557999999999999999999875333 443 57888874 77772 2 5777654
No 58
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=62.92 E-value=5.7 Score=41.23 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=29.2
Q ss_pred EEEE-ecCCCceEEEEecCCCCCCCc-Ccc-ccC-CcEEEEEe
Q 027175 97 AAIT-WSLGGKQVAVTGSWDNWENVD-PLW-RLG-KDFVIMKM 135 (227)
Q Consensus 97 v~f~-W~~gakeV~V~GSFnnW~~~i-pL~-ks~-~~f~~~l~ 135 (227)
+.++ |..++..|.++|+||+|.... .|. |.. +.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcccccceeEEecC
Confidence 5554 999999999999999999743 333 433 47887766
No 59
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=58.87 E-value=29 Score=25.41 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=29.6
Q ss_pred ceEEEEEecCC-CceEE-EEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEE
Q 027175 94 QVAAAITWSLG-GKQVA-VTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (227)
Q Consensus 94 ~vpv~f~W~~g-akeV~-V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YK 144 (227)
+-.++|++... +.+|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 18 GdtVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 18 GDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred CCEEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 34566776654 55664 44565554432344455667887776 57987775
No 60
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=56.80 E-value=48 Score=26.52 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=27.5
Q ss_pred cceEEEEEecCCCceEEEE-ecCCCCCCCcCccccCCcEEEEEeCCCeeEEEE
Q 027175 93 KQVAAAITWSLGGKQVAVT-GSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (227)
Q Consensus 93 ~~vpv~f~W~~gakeV~V~-GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YK 144 (227)
.+-.|+|+|...+..|... +..- +....-....+..|+.++. .+|.|.|.
T Consensus 21 ~GdTV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 21 PGDTVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCCEEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 4567889998877776653 2111 1110001122446777776 56888776
No 61
>PRK10785 maltodextrin glucosidase; Provisional
Probab=53.15 E-value=48 Score=33.29 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=38.5
Q ss_pred cceEEEEEecC-C-CceEEEEecCCCCCCCcCccccCC-----cEEEEEeCC--CeeEEEEEEE--cCe
Q 027175 93 KQVAAAITWSL-G-GKQVAVTGSWDNWENVDPLWRLGK-----DFVIMKMLP--SGVYHYRFIV--DEC 150 (227)
Q Consensus 93 ~~vpv~f~W~~-g-akeV~V~GSFnnW~~~ipL~ks~~-----~f~~~l~Lp--~G~Y~YKFiV--DG~ 150 (227)
..+.++++-.. . .+.|.|.=.+++-....+|++... .|++++.++ .+++.|.|.+ +++
T Consensus 19 ~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 19 DQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 34555554332 2 578888766666545568887532 489999886 7889999988 553
No 62
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=48.70 E-value=65 Score=25.74 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=28.8
Q ss_pred cceEEEEEecC--CCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEE
Q 027175 93 KQVAAAITWSL--GGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (227)
Q Consensus 93 ~~vpv~f~W~~--gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YK 144 (227)
.+-.|+|+|+. .+..|...+. ..|.....+...+..|+.++. .+|.|.|.
T Consensus 48 ~GdTVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 48 PGTTVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCCEEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 34567788865 3566654311 124322222234567888886 67998886
No 63
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.15 E-value=18 Score=36.75 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCeeEEEEEEEcCeec---cCCCCCeeeC
Q 027175 137 PSGVYHYRFIVDECLR---YAPDVPWECD 162 (227)
Q Consensus 137 p~G~Y~YKFiVDG~W~---~Dp~~P~~~D 162 (227)
..|.|++||.++|+|+ .|+-+|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 5799999999999984 5667788654
No 64
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=44.76 E-value=26 Score=26.78 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=16.7
Q ss_pred EEEEEeCCCeeEEEEEEEcC
Q 027175 130 FVIMKMLPSGVYHYRFIVDE 149 (227)
Q Consensus 130 f~~~l~Lp~G~Y~YKFiVDG 149 (227)
.+..+.|+.|.|.-+|...+
T Consensus 91 ~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 91 VSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEEESEEEEEEEEESS
T ss_pred EEEEEeeCCCeeEEEEEEEC
Confidence 45678999999999999876
No 65
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=41.45 E-value=40 Score=25.48 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=23.3
Q ss_pred CcceEEEEEecCC---CceEEEEecCCCCCCCcCccccCCcEEEEE-eCCCeeEEEE
Q 027175 92 EKQVAAAITWSLG---GKQVAVTGSWDNWENVDPLWRLGKDFVIMK-MLPSGVYHYR 144 (227)
Q Consensus 92 ~~~vpv~f~W~~g---akeV~V~GSFnnW~~~ipL~ks~~~f~~~l-~Lp~G~Y~YK 144 (227)
..+.|++|+|... ..++.+.+ -|.. ..|. -+..+++++ .+++|+|+|.
T Consensus 40 ~~G~~v~l~~~N~~~~~h~~~i~~---~~~~-~~l~-~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 40 KAGQPVTLTFTNNDSRPHEFVIPD---LGIS-KVLP-PGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ETTCEEEEEEEE-SSS-EEEEEGG---GTEE-EEE--TT-EEEEEEEE-S-EEEEEB
T ss_pred cCCCeEEEEEEECCCCcEEEEECC---CceE-EEEC-CCCEEEEEEcCCCCEEEEEE
Confidence 4567888888753 23444433 1111 1122 244566665 7899998763
No 66
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=37.80 E-value=60 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=26.0
Q ss_pred EEecCCCCCCCcCcc-c-cCCcEEEEE--eCCCeeEEEEEEEcCe
Q 027175 110 VTGSWDNWENVDPLW-R-LGKDFVIMK--MLPSGVYHYRFIVDEC 150 (227)
Q Consensus 110 V~GSFnnW~~~ipL~-k-s~~~f~~~l--~Lp~G~Y~YKFiVDG~ 150 (227)
+.|+|.+= ...|. + .++.|+..+ ..++|+|+.++.+||.
T Consensus 153 vvg~f~Dd--G~g~DE~p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 153 VVGEFEDD--GEGLDERPGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEeeccC--CccCCCCCCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 55666422 22232 2 456898764 6779999999999984
No 67
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=36.83 E-value=1e+02 Score=24.01 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=35.3
Q ss_pred cceEEEEEecC--CCceEEEEecCCCCCCCcCcc----c-----c--C--CcEEEEEeCCCe--------eEEEEEEEcC
Q 027175 93 KQVAAAITWSL--GGKQVAVTGSWDNWENVDPLW----R-----L--G--KDFVIMKMLPSG--------VYHYRFIVDE 149 (227)
Q Consensus 93 ~~vpv~f~W~~--gakeV~V~GSFnnW~~~ipL~----k-----s--~--~~f~~~l~Lp~G--------~Y~YKFiVDG 149 (227)
..+..++.-.. -.|+|.|.=+||+|.....+. . + . ..|...+.|++. ++--+|.|.|
T Consensus 19 ~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g 98 (113)
T PF03370_consen 19 QSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNG 98 (113)
T ss_dssp SEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETT
T ss_pred CEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCC
Confidence 33444444443 248899999999998643221 1 1 1 258888888754 3566888888
Q ss_pred e
Q 027175 150 C 150 (227)
Q Consensus 150 ~ 150 (227)
+
T Consensus 99 ~ 99 (113)
T PF03370_consen 99 Q 99 (113)
T ss_dssp E
T ss_pred C
Confidence 5
No 68
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=35.99 E-value=48 Score=28.78 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCCCCCcCccccCC-cEEEEEeCC-CeeEEEEEE--Ec--CeeccC
Q 027175 115 DNWENVDPLWRLGK-DFVIMKMLP-SGVYHYRFI--VD--ECLRYA 154 (227)
Q Consensus 115 nnW~~~ipL~ks~~-~f~~~l~Lp-~G~Y~YKFi--VD--G~W~~D 154 (227)
..|+. +||+..++ .|...+.+. .|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 34876 89998876 699998766 599999876 46 456665
No 69
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.99 E-value=25 Score=35.43 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCee-EEEEEEEcCe----eccCCCCCeeeC
Q 027175 128 KDFVIMKMLPSGV-YHYRFIVDEC----LRYAPDVPWECD 162 (227)
Q Consensus 128 ~~f~~~l~Lp~G~-Y~YKFiVDG~----W~~Dp~~P~~~D 162 (227)
+.+...++++||. |.|+|.||++ |.+......-.+
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~ 137 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT 137 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc
Confidence 3777889999995 9999999953 666665554433
No 70
>PLN00115 pollen allergen group 3; Provisional
Probab=33.13 E-value=1.5e+02 Score=24.07 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=34.7
Q ss_pred cCCCceEEEEecC-CCCCCCcCcccc-CCcEEEEEe-CCCeeEEEEEEEc-CeeccC
Q 027175 102 SLGGKQVAVTGSW-DNWENVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVD-ECLRYA 154 (227)
Q Consensus 102 ~~gakeV~V~GSF-nnW~~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVD-G~W~~D 154 (227)
+.+=.+|.|.++= .+|.. +|+|+ +..|.+.-. .+.|-+.+||... |.++..
T Consensus 44 ~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va 98 (118)
T PLN00115 44 NVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVV 98 (118)
T ss_pred eCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEE
Confidence 3344788888862 36751 69998 569997643 3458899999885 765544
No 71
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=32.22 E-value=48 Score=25.59 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=13.4
Q ss_pred EEEEeCCCeeEEEEEEEcC
Q 027175 131 VIMKMLPSGVYHYRFIVDE 149 (227)
Q Consensus 131 ~~~l~Lp~G~Y~YKFiVDG 149 (227)
++.+.|+.|.|.-+|+..|
T Consensus 100 ~~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 100 SATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEEccCCceEEEEEEEEC
Confidence 4557777898887776544
No 72
>PLN03023 Expansin-like B1; Provisional
Probab=31.41 E-value=1.1e+02 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=33.3
Q ss_pred EEEEEecCCC---ceEEEEec-CCCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEEc
Q 027175 96 AAAITWSLGG---KQVAVTGS-WDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVD 148 (227)
Q Consensus 96 pv~f~W~~ga---keV~V~GS-FnnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiVD 148 (227)
.+++....|. ..|.|.++ =.+|. +|+|+ +..|++...| .|.+..||.|.
T Consensus 163 ~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~l-~Gp~slrf~v~ 216 (247)
T PLN03023 163 AIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNPP-KGPITLRFQVS 216 (247)
T ss_pred EEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCCC-CCceeEEEEEE
Confidence 4444444432 56788884 34675 69998 5689886554 69999999984
No 73
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=29.14 E-value=87 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCeeEEEEEEEcCeeccCCCCCe
Q 027175 128 KDFVIMKMLPSGVYHYRFIVDECLRYAPDVPW 159 (227)
Q Consensus 128 ~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~ 159 (227)
+.=++.+.|+||+|....+. |.+.+-+..|.
T Consensus 51 Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 51 GQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 44467799999999999887 44566665554
No 74
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.81 E-value=63 Score=25.41 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=18.3
Q ss_pred EEEeCC-CeeEEEEEEEcCeeccCCC
Q 027175 132 IMKMLP-SGVYHYRFIVDECLRYAPD 156 (227)
Q Consensus 132 ~~l~Lp-~G~Y~YKFiVDG~W~~Dp~ 156 (227)
+-+-=| .|-|+|.|. +|+|++.-+
T Consensus 62 IWlsSpisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 62 IWLSSPISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp EEEEETTTEEEEEEEE-SSSEEETTT
T ss_pred HHHhcccCCceEEEEc-CCEEEECCC
Confidence 334446 899999999 999997654
No 75
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.34 E-value=69 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=13.0
Q ss_pred EeCCCeeEEEEEEE---cCeeccCC
Q 027175 134 KMLPSGVYHYRFIV---DECLRYAP 155 (227)
Q Consensus 134 l~Lp~G~Y~YKFiV---DG~W~~Dp 155 (227)
-.||||.|.++-.+ +|.|..+.
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 57999999888776 47776554
No 76
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.81 E-value=44 Score=26.26 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=14.9
Q ss_pred CCeeEEEEEEEcCeeccCCC
Q 027175 137 PSGVYHYRFIVDECLRYAPD 156 (227)
Q Consensus 137 p~G~Y~YKFiVDG~W~~Dp~ 156 (227)
|.|-|+|.|. ||+|++.-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 4487899885 999998754
No 77
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=22.90 E-value=50 Score=26.08 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.0
Q ss_pred cCccccC---CcEEEEEeCCCeeEEEEEEEcCeeccCCC
Q 027175 121 DPLWRLG---KDFVIMKMLPSGVYHYRFIVDECLRYAPD 156 (227)
Q Consensus 121 ipL~ks~---~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~ 156 (227)
+-+.|.. ..|.+. |.|-|+|.|. +|.|++.-+
T Consensus 48 ~VINkQ~p~~QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 48 IIINRQEPLHELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred EEEeCCCchhheeEec---CCCCccceec-CCeEEECCC
Confidence 3445543 356665 5788999995 999998754
No 78
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=22.52 E-value=56 Score=25.47 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.7
Q ss_pred CeeEEEEEEEcCeeccCCC
Q 027175 138 SGVYHYRFIVDECLRYAPD 156 (227)
Q Consensus 138 ~G~Y~YKFiVDG~W~~Dp~ 156 (227)
.|-|+|.| ++|+|++.-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 68899999 4999998754
No 79
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.95 E-value=2.6e+02 Score=19.33 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=25.9
Q ss_pred EEecCCCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcC
Q 027175 99 ITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDE 149 (227)
Q Consensus 99 f~W~~gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG 149 (227)
|+=...+-+|+|-|.+-+ ..|+ ....|++|.|.+++.-+|
T Consensus 6 V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 6 VTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECC
Confidence 333446778888776655 1222 122388899988888888
Done!