Query 027177
Match_columns 227
No_of_seqs 145 out of 1341
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03201 RAB geranylgeranyl tr 100.0 2.3E-55 5.1E-60 369.3 22.0 227 1-227 5-231 (316)
2 PLN02710 farnesyltranstransfer 100.0 8.9E-54 1.9E-58 367.8 22.8 226 1-227 41-270 (439)
3 KOG0366 Protein geranylgeranyl 100.0 3.9E-53 8.5E-58 332.3 17.1 225 3-227 17-241 (329)
4 cd02894 GGTase-II Geranylgeran 100.0 1.3E-51 2.7E-56 343.8 21.5 224 4-227 1-227 (287)
5 cd02893 FTase Protein farnesyl 100.0 2.2E-51 4.9E-56 343.2 20.7 220 6-227 1-226 (299)
6 cd02890 PTase Protein prenyltr 100.0 2.1E-48 4.5E-53 324.8 21.7 221 6-227 1-226 (286)
7 cd02895 GGTase-I Geranylgerany 100.0 1.8E-48 3.8E-53 326.6 21.0 220 6-227 1-247 (307)
8 cd02894 GGTase-II Geranylgeran 100.0 2.2E-47 4.7E-52 318.3 22.0 225 3-227 48-276 (287)
9 cd02895 GGTase-I Geranylgerany 100.0 5.8E-47 1.2E-51 317.5 22.3 225 3-227 48-296 (307)
10 COG5029 CAL1 Prenyltransferase 100.0 7.2E-47 1.6E-51 304.5 15.5 225 3-227 25-254 (342)
11 PLN03201 RAB geranylgeranyl tr 100.0 9.3E-46 2E-50 311.1 22.1 225 3-227 55-280 (316)
12 KOG0365 Beta subunit of farnes 100.0 1.8E-46 3.9E-51 304.8 16.0 220 6-227 74-299 (423)
13 cd02890 PTase Protein prenyltr 100.0 3.7E-45 8E-50 305.2 22.9 225 3-227 46-275 (286)
14 cd02893 FTase Protein farnesyl 100.0 4.7E-43 1E-47 293.0 21.9 223 3-225 46-286 (299)
15 PLN02710 farnesyltranstransfer 100.0 4.6E-43 1E-47 301.6 20.9 223 3-225 91-376 (439)
16 KOG0367 Protein geranylgeranyl 100.0 3.7E-43 8E-48 280.5 16.8 223 3-227 10-259 (347)
17 KOG0366 Protein geranylgeranyl 100.0 5.1E-38 1.1E-42 247.1 19.1 224 2-225 64-288 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 4.1E-36 8.9E-41 242.3 16.3 222 4-225 75-301 (342)
19 KOG0367 Protein geranylgeranyl 100.0 1.4E-32 3E-37 219.9 16.4 192 2-193 123-322 (347)
20 cd00688 ISOPREN_C2_like This g 100.0 3E-30 6.6E-35 214.0 19.8 222 4-227 52-289 (300)
21 KOG0365 Beta subunit of farnes 100.0 2E-30 4.4E-35 211.3 16.3 222 6-227 122-361 (423)
22 TIGR03463 osq_cycl 2,3-oxidosq 100.0 8.2E-29 1.8E-33 225.1 17.9 219 6-227 330-616 (634)
23 cd00688 ISOPREN_C2_like This g 100.0 4.4E-28 9.6E-33 201.0 18.3 218 7-227 2-240 (300)
24 TIGR01507 hopene_cyclase squal 100.0 1.7E-27 3.6E-32 216.4 19.9 213 6-219 338-600 (635)
25 PLN03012 Camelliol C synthase 100.0 1.2E-27 2.7E-32 217.4 18.2 174 53-227 514-734 (759)
26 PLN02993 lupeol synthase 100.0 4.1E-27 8.8E-32 214.5 17.9 219 6-227 441-734 (763)
27 cd02892 SQCY_1 Squalene cyclas 99.9 2E-26 4.4E-31 210.7 17.8 212 6-218 331-605 (634)
28 cd02889 SQCY Squalene cyclase 99.9 5.9E-26 1.3E-30 194.3 16.7 212 5-217 47-318 (348)
29 TIGR01787 squalene_cyclas squa 99.9 4E-25 8.7E-30 200.8 17.0 213 6-219 321-590 (621)
30 cd02889 SQCY Squalene cyclase 99.9 1.7E-24 3.6E-29 185.3 18.5 208 7-218 2-261 (348)
31 COG1689 Uncharacterized protei 99.9 4.7E-22 1E-26 153.2 14.4 205 3-219 5-251 (274)
32 PF13249 Prenyltrans_2: Prenyl 99.9 6.6E-23 1.4E-27 147.8 8.5 109 58-169 1-113 (113)
33 TIGR01507 hopene_cyclase squal 99.9 2.3E-21 5.1E-26 176.4 20.2 212 5-218 288-541 (635)
34 TIGR03463 osq_cycl 2,3-oxidosq 99.9 1.3E-21 2.8E-26 178.2 18.1 212 6-219 278-548 (634)
35 cd02892 SQCY_1 Squalene cyclas 99.9 4.3E-21 9.4E-26 175.7 19.2 211 6-218 280-547 (634)
36 cd02896 complement_C3_C4_C5 Pr 99.9 2.4E-21 5.2E-26 162.4 16.2 195 8-217 56-283 (297)
37 PF13249 Prenyltrans_2: Prenyl 99.9 2.8E-22 6.2E-27 144.5 8.5 108 106-216 1-112 (113)
38 cd02897 A2M_2 Proteins similar 99.9 3.9E-20 8.5E-25 154.9 17.9 199 6-217 44-278 (292)
39 TIGR01787 squalene_cyclas squa 99.9 3.5E-20 7.5E-25 168.7 18.3 211 6-219 269-532 (621)
40 PLN03012 Camelliol C synthase 99.9 2.4E-20 5.1E-25 170.2 16.6 184 6-190 515-752 (759)
41 PLN02993 lupeol synthase 99.8 2.5E-20 5.4E-25 170.4 15.3 189 30-219 415-662 (763)
42 KOG0497 Oxidosqualene-lanoster 99.7 8.6E-17 1.9E-21 142.4 13.5 158 56-217 516-721 (760)
43 PF07678 A2M_comp: A-macroglob 99.7 1.3E-15 2.7E-20 124.6 12.2 193 11-217 4-230 (246)
44 COG1689 Uncharacterized protei 99.6 8.6E-15 1.9E-19 113.3 14.1 152 29-191 119-272 (274)
45 cd02891 A2M_like Proteins simi 99.6 8.3E-14 1.8E-18 115.8 17.3 198 6-217 51-268 (282)
46 PF13243 Prenyltrans_1: Prenyl 99.6 4.3E-16 9.4E-21 111.5 2.9 104 103-210 2-107 (109)
47 cd02896 complement_C3_C4_C5 Pr 99.6 8.2E-14 1.8E-18 116.9 14.5 152 54-218 54-227 (297)
48 cd02897 A2M_2 Proteins similar 99.5 1.4E-12 3E-17 109.3 17.5 167 38-217 28-219 (292)
49 PF13243 Prenyltrans_1: Prenyl 99.5 5.5E-14 1.2E-18 100.6 4.0 105 54-162 1-107 (109)
50 PF00432 Prenyltrans: Prenyltr 99.4 2.8E-13 6.2E-18 80.8 4.7 44 148-191 1-44 (44)
51 KOG0497 Oxidosqualene-lanoster 99.4 3.9E-12 8.5E-17 113.3 12.7 189 31-220 415-662 (760)
52 COG1657 SqhC Squalene cyclase 99.3 1.3E-11 2.8E-16 108.4 8.5 195 19-219 248-482 (517)
53 cd02891 A2M_like Proteins simi 99.3 1.6E-10 3.4E-15 96.2 14.5 145 53-209 50-207 (282)
54 PF00432 Prenyltrans: Prenyltr 99.2 8.2E-12 1.8E-16 74.4 3.9 44 100-143 1-44 (44)
55 COG1657 SqhC Squalene cyclase 98.9 2.2E-09 4.8E-14 94.5 6.3 167 56-225 237-430 (517)
56 PF07678 A2M_comp: A-macroglob 98.9 1.5E-08 3.1E-13 83.0 9.4 151 57-219 2-172 (246)
57 KOG1366 Alpha-macroglobulin [P 98.4 1.5E-06 3.2E-11 85.5 9.6 196 5-217 965-1196(1436)
58 TIGR02474 pec_lyase pectate ly 98.4 7.7E-06 1.7E-10 67.6 12.1 70 102-171 69-160 (290)
59 TIGR02474 pec_lyase pectate ly 97.9 7.4E-05 1.6E-09 61.9 8.3 129 35-164 45-222 (290)
60 PF09492 Pec_lyase: Pectic aci 96.8 0.0019 4.1E-08 53.6 4.4 134 83-217 40-222 (289)
61 PF09492 Pec_lyase: Pectic aci 96.6 0.0052 1.1E-07 51.1 5.9 43 128-170 37-84 (289)
62 PF01122 Cobalamin_bind: Eukar 95.4 0.043 9.2E-07 46.5 5.9 61 149-217 216-279 (326)
63 PLN02592 ent-copalyl diphospha 94.5 0.2 4.2E-06 47.7 8.4 59 53-112 116-176 (800)
64 PLN02592 ent-copalyl diphospha 94.5 0.045 9.8E-07 51.8 4.2 61 147-208 114-176 (800)
65 PF05817 Ribophorin_II: Oligos 94.2 1.9 4.2E-05 40.2 14.0 130 30-191 46-177 (636)
66 KOG1366 Alpha-macroglobulin [P 94.1 0.15 3.2E-06 51.4 7.0 87 36-122 948-1046(1436)
67 PLN02279 ent-kaur-16-ene synth 94.1 0.093 2E-06 49.8 5.4 74 132-207 58-135 (784)
68 PLN02279 ent-kaur-16-ene synth 93.4 0.46 1E-05 45.2 8.6 59 52-111 73-135 (784)
69 PF01122 Cobalamin_bind: Eukar 91.6 1.2 2.5E-05 37.9 8.0 118 38-168 148-278 (326)
70 PF07470 Glyco_hydro_88: Glyco 75.6 4.8 0.0001 34.2 4.5 162 53-214 91-294 (336)
71 TIGR01577 oligosac_amyl oligos 74.5 75 0.0016 29.7 16.9 78 142-219 489-586 (616)
72 PF05817 Ribophorin_II: Oligos 71.0 90 0.002 29.4 11.8 57 30-96 121-178 (636)
73 PF10022 DUF2264: Uncharacteri 60.5 1.1E+02 0.0025 26.5 15.9 134 50-192 130-278 (361)
74 TIGR01535 glucan_glucosid gluc 55.4 1.2E+02 0.0025 28.7 9.6 78 81-160 297-385 (648)
75 TIGR01535 glucan_glucosid gluc 55.0 50 0.0011 31.1 7.1 104 103-208 254-385 (648)
76 PF07470 Glyco_hydro_88: Glyco 51.8 39 0.00085 28.7 5.6 64 103-166 218-294 (336)
77 TIGR01577 oligosac_amyl oligos 48.3 51 0.0011 30.8 6.1 35 132-168 300-334 (616)
78 cd00249 AGE AGE domain; N-acyl 47.2 87 0.0019 26.8 7.1 113 103-215 17-158 (384)
79 COG2373 Large extracellular al 40.4 40 0.00086 35.3 4.3 44 149-192 1200-1244(1621)
80 TIGR03046 PS_II_psbV2 photosys 37.2 43 0.00093 25.4 3.1 53 148-217 96-152 (155)
81 COG2373 Large extracellular al 36.3 80 0.0017 33.2 5.7 43 53-95 1200-1243(1621)
82 PF07944 DUF1680: Putative gly 29.7 77 0.0017 28.9 4.1 23 149-171 84-106 (520)
83 TIGR03046 PS_II_psbV2 photosys 28.7 1.1E+02 0.0024 23.2 4.1 55 102-169 98-152 (155)
84 PRK13617 psbV cytochrome c-550 27.9 52 0.0011 25.3 2.3 64 101-169 101-165 (170)
85 PRK13621 psbV cytochrome c-550 27.3 1.3E+02 0.0028 23.2 4.3 52 102-169 109-163 (170)
86 PF10022 DUF2264: Uncharacteri 27.2 4.2E+02 0.0091 23.1 15.0 179 4-193 132-347 (361)
87 COG4225 Predicted unsaturated 24.7 2.8E+02 0.0061 24.0 6.2 61 151-211 235-306 (357)
88 PF00017 SH2: SH2 domain; Int 22.9 54 0.0012 20.9 1.4 22 2-24 4-25 (77)
89 PF09282 Mago-bind: Mago bindi 21.3 9.2 0.0002 19.8 -1.9 14 11-24 3-16 (27)
90 PRK13622 psbV cytochrome c-550 20.8 1.9E+02 0.0042 22.5 4.2 64 101-172 104-170 (180)
No 1
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=2.3e-55 Score=369.31 Aligned_cols=227 Identities=81% Similarity=1.454 Sum_probs=215.2
Q ss_pred CCcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
|.++.+++|++||.++++.+++|.+...++++++.+||++.+|++|+..+..+++++++||++||++||||++.++.++|
T Consensus 5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h 84 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH 84 (316)
T ss_pred hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence 45789999999999999999999877667889999999999999999877778999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~ 160 (227)
+.+||+|+++|.+++..+.+|++++++||+++|++||||.+.++++.|+++||||++++.+++..+.++++++++||++|
T Consensus 85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc 164 (316)
T PLN03201 85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 99999999999999888888999999999999999999999899999999999999999999987778899999999999
Q ss_pred cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
|++||||+.+|+.++|+.+||||+++|.++|.++.++.+++++||.+||..+|||+|||||++|+||
T Consensus 165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cy 231 (316)
T PLN03201 165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY 231 (316)
T ss_pred cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHH
Confidence 9999999999999999999999999999999888788999999999999999999999999999998
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=8.9e-54 Score=367.80 Aligned_cols=226 Identities=32% Similarity=0.552 Sum_probs=209.5
Q ss_pred CCcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (227)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (227)
|..+.+++|++|++++-.+ -+..+...+.+++|.+||+|.+|.+|+.. ++..++++++||.+||++||||++.++..+
T Consensus 41 ~~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~ 119 (439)
T PLN02710 41 MLELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLP 119 (439)
T ss_pred cccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCc
Confidence 4579999999999997553 34445556899999999999999999983 455788999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHH
Q 027177 80 HVLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY 156 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~ 156 (227)
|+..||+|+.+|.+++. ++.+|++++++||+++|++||||...+++++|+++||||++++.+++.++.+.++++++|
T Consensus 120 hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~ 199 (439)
T PLN02710 120 HLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDY 199 (439)
T ss_pred cHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHH
Confidence 99999999999999985 466899999999999999999999999999999999999999999998877889999999
Q ss_pred HHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 157 IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 157 l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
|++||++||||+.+|+.++|+.+|||||++|.+++..+.++.+++++||++||+.+|||+|||||++|+||
T Consensus 200 I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CY 270 (439)
T PLN02710 200 ILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCY 270 (439)
T ss_pred HHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchh
Confidence 99999999999999999999999999999999999988889999999999999999999999999999998
No 3
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-53 Score=332.31 Aligned_cols=225 Identities=69% Similarity=1.270 Sum_probs=218.0
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (227)
.+.+++|++||.+.-++..+|.++-.++-++.++||.+.+|.+++......+++++.|+++||+.+|||++.+|+++|+.
T Consensus 17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll 96 (329)
T KOG0366|consen 17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL 96 (329)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence 56789999999998777778999988899999999999999999998777899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~ 162 (227)
.|++|+++|++.+.+..+|+++++.|+..+|++||+|.+..|++.|.+++|||+++|+++|.++.++++++++|+++|.|
T Consensus 97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN 176 (329)
T KOG0366|consen 97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN 176 (329)
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
-||||+.+|+.|||+...||.+++|+++|+++.++.+....||.+||.+.||.+|||-|+||.||
T Consensus 177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCY 241 (329)
T KOG0366|consen 177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCY 241 (329)
T ss_pred cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999
No 4
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.3e-51 Score=343.81 Aligned_cols=224 Identities=63% Similarity=1.218 Sum_probs=209.7
Q ss_pred ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhcc-CCCCCccCCCCCCCChH
Q 027177 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL 82 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~ 82 (227)
+++++|++|++++.+...++.+...+.++++.+||++++|.+|+..+..+++++++||+++| +++|||...++.++|+.
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~ 80 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL 80 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence 57899999999998865556677778999999999999999999876668999999999999 77999999999899999
Q ss_pred HHHHHHHHHHhcccCCCCC--HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177 83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~ 160 (227)
+|++|+.+|.+++.++.++ ++++++||+++|++||||++.+++++|+++||+|+++|.+++..+.++++++++||++|
T Consensus 81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9999999999987666677 89999999999999999999999999999999999999999987778899999999999
Q ss_pred cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
|++||||+.+|+.++|+.+||||+++|.++|..+.++++++++||+++|.++|||++||||+||+||
T Consensus 161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~y 227 (287)
T cd02894 161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCY 227 (287)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhH
Confidence 9999999999999999999999999999999988889999999999999999999999999999998
No 5
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.2e-51 Score=343.18 Aligned_cols=220 Identities=40% Similarity=0.706 Sum_probs=203.9
Q ss_pred HHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCC-CCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHH
Q 027177 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (227)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (227)
+++|++|++++.. .+++|... +.+++|.+||++.+|.+|+. ..+..++++++||+++|++||||++.++.++|+.+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~--d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSL--DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCcccccc--ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 5899999999877 55666644 68899999999999999997 34457889999999999999999999999999999
Q ss_pred HHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (227)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~ 160 (227)
||+|+.+|.+++. .+.++++++++||+++|++||||...+.+++|+++|||+++++.+++.+++++++++++||++|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999986 3567889999999999999999999999999999999999999999987778899999999999
Q ss_pred cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCCCC
Q 027177 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVVM 227 (227)
Q Consensus 161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~cy 227 (227)
|++||||+.+|+.++|+.+||||+++|.+++..+.++.+++++||+++|.+ +|||+|||||++|+||
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cy 226 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCY 226 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHH
Confidence 999999999999999999999999999999998888999999999999987 9999999999999998
No 6
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2.1e-48 Score=324.83 Aligned_cols=221 Identities=45% Similarity=0.813 Sum_probs=206.2
Q ss_pred HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhcc-CCCCCccCCCCCCCChHH
Q 027177 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY 83 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~ 83 (227)
+++|++||++.++.+ ++.....++++++.+||++.+|.+|+.. ...+++++++||+++| ++||||+..++.++|+..
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~ 79 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS 79 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence 589999999998876 5666666899999999999999999983 3458999999999999 999999999989999999
Q ss_pred HHHHHHHHHhccc--CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhcc
Q 027177 84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (227)
Q Consensus 84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q 161 (227)
|++|+.+|.+++. .+.++++++++||.++|++||||...+++++|+++||+++.+|.+++....++++++++||++||
T Consensus 80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999987 46778899999999999999999998889999999999999999999876778999999999999
Q ss_pred CCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCC-CcCCCCCCCCCCCC
Q 027177 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVVM 227 (227)
Q Consensus 162 ~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~G-Gf~~~~~k~~D~cy 227 (227)
++||||+.+|+.++|+.+||||+++|.+++.+++++++++++||+++|+.+| ||++||||+||+||
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~y 226 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCY 226 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccch
Confidence 9999999999999999999999999999999888899999999999999887 99999999999998
No 7
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=1.8e-48 Score=326.64 Aligned_cols=220 Identities=35% Similarity=0.618 Sum_probs=198.9
Q ss_pred HHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhcc----CCCCCccCCCC-
Q 027177 6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG- 76 (227)
Q Consensus 6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~- 76 (227)
+++|++|+.++.++ +.+|. ..++++++.+||+|.+|.+|+... ..++++.++||.+|| ++||||++.++
T Consensus 1 ~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~ 78 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSSYQ--SLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL 78 (307)
T ss_pred ChHHHHHHHHHhhhCCchhh--hhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence 47999999998653 34444 347899999999999999999764 467889999999999 99999999776
Q ss_pred ---------CCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCC---CCCCCccchhHHHHHHHHhh
Q 027177 77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ 143 (227)
Q Consensus 77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~---~~~~d~~~t~~a~~~L~~~g 143 (227)
.++|+..||+|+.+|.+++. .+.+|++++++||+++|++||||+..+ .+++|+++||||+++|.+++
T Consensus 79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 47999999999999999975 345789999999999999999999886 78999999999999999999
Q ss_pred ccC--cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC---CCCHHHHHHHHHccCccCCCcCCC
Q 027177 144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 144 ~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~---~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
..+ .++.+++++||++||++||||+..|+.|+|..+||||+++|.+++..+ .++.+++++||++||+.+|||++|
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 865 578999999999999999999999999999999999999999999876 578999999999999999999999
Q ss_pred CCCCCCCCC
Q 027177 219 PEKLPDVVM 227 (227)
Q Consensus 219 ~~k~~D~cy 227 (227)
|||++|+||
T Consensus 239 ~~k~~D~cy 247 (307)
T cd02895 239 PNKPADTCY 247 (307)
T ss_pred CCCCCccch
Confidence 999999998
No 8
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.2e-47 Score=318.32 Aligned_cols=225 Identities=23% Similarity=0.387 Sum_probs=209.3
Q ss_pred cccHHHHHHHHHHcc-cCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcC--HHHHHHHHHhccCCCCCccCCCCCCC
Q 027177 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP 79 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (227)
.++++++++||+++| +++|+|......++++..||.++.+|.+++....++ ++++++||+++|++||||+..++.++
T Consensus 48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~ 127 (287)
T cd02894 48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV 127 (287)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence 357899999999999 679999887766778899999999999987644455 89999999999999999999888899
Q ss_pred ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~ 159 (227)
|+..||+|+.+|.+++..+.++++++++||.++|++||||++++++++|+++|||++++|.++|..+.++++++++||.+
T Consensus 128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~ 207 (287)
T cd02894 128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE 207 (287)
T ss_pred hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence 99999999999999988777889999999999999999999999999999999999999999998877889999999999
Q ss_pred ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC-ccCCCcCCCCCCCCCCCC
Q 027177 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~k~~D~cy 227 (227)
+|+++|||..+|+.++|+.+|||++++|.+++..+..+.+++.+||+++| .++|||+++|+|++|.||
T Consensus 208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~h 276 (287)
T cd02894 208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFH 276 (287)
T ss_pred hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhH
Confidence 99999999999999999999999999999999876678999999999999 579999999999999996
No 9
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=5.8e-47 Score=317.50 Aligned_cols=225 Identities=23% Similarity=0.353 Sum_probs=207.8
Q ss_pred cccHHHHHHHHHHcc----cCCCCcchhhc----------ccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCC
Q 027177 3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE 67 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~ 67 (227)
++++++.++||.++| +++|+|..... +.++++.||||+.+|.+|+.. ..++++++++||+++|++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 578899999999999 99999987654 478999999999999999864 346889999999999999
Q ss_pred CCCccCCC---CCCCChHHHHHHHHHHHhcccCC--CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHh
Q 027177 68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (227)
Q Consensus 68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~ 142 (227)
||||+..+ +.++|+..||+|+.++.+++..+ .++++++++||.++|++||||+..+..++|..+|||++++|.++
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL 207 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL 207 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence 99999987 78999999999999999998765 57899999999999999999999999999999999999999999
Q ss_pred hccC---cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCC
Q 027177 143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGR 218 (227)
Q Consensus 143 g~~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~ 218 (227)
+... .++.+++++||+++|+++|||+.+|++++|+.+|||++++|.+++..+.++.+++.+||+++|. .+|||+++
T Consensus 208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~ 287 (307)
T cd02895 208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN 287 (307)
T ss_pred CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence 9864 6789999999999999999999999999999999999999999998877899999999999874 69999999
Q ss_pred CCCCCCCCC
Q 027177 219 PEKLPDVVM 227 (227)
Q Consensus 219 ~~k~~D~cy 227 (227)
|+|.||.|+
T Consensus 288 p~~~~D~~h 296 (307)
T cd02895 288 PDSHPDPLH 296 (307)
T ss_pred CCCCCChhH
Confidence 999999985
No 10
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-47 Score=304.48 Aligned_cols=225 Identities=44% Similarity=0.745 Sum_probs=208.7
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhccCCCCCccCCCCCCCCh
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (227)
.+.+++|++|+.......-.+.++-.++++.|.+||...++.+++... .+..++.+.+++.|+.+.|+|+..+++++|+
T Consensus 25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL 104 (342)
T COG5029 25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL 104 (342)
T ss_pred ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence 577899999999986655455666667899999999999999999875 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHH
Q 027177 82 LYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV 158 (227)
Q Consensus 82 ~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~ 158 (227)
.+|++|+++|.+++.. +.++++++.+||.++|+|||+|....+++.|.+..|+|+.+|.++|..+.+..+.+++||+
T Consensus 105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~ 184 (342)
T COG5029 105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK 184 (342)
T ss_pred HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 9999999999999754 4556788999999999999999998889999999999999999999988889999999999
Q ss_pred hccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCC-HHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 159 ~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~-~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
+|||.||||+..|+.|+|..+||||+++|++++.++..+ ++++++||.+||-+.|||+||+||.+|+||
T Consensus 185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY 254 (342)
T COG5029 185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCY 254 (342)
T ss_pred HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchh
Confidence 999999999999999999999999999999999998887 799999999999999999999999999999
No 11
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=9.3e-46 Score=311.14 Aligned_cols=225 Identities=22% Similarity=0.378 Sum_probs=211.4
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (227)
..++++.++||.++|+++|+|+..+.+++++..||.++.+|.+++....++++++++||.++|++||||...++.+.|+.
T Consensus 55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r 134 (316)
T PLN03201 55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR 134 (316)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence 46889999999999999999998887778999999999999999776667899999999999999999999888899999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~ 162 (227)
.||+|++++.+++..+.++++++++||.++|++||||+.+|.+++|..+|||++++|.++|..+..+.+++++||.++|.
T Consensus 135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~ 214 (316)
T PLN03201 135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV 214 (316)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence 99999999999998777889999999999999999999999999999999999999999998777788999999999999
Q ss_pred CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCCCC
Q 027177 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVVM 227 (227)
Q Consensus 163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~cy 227 (227)
++|||..+|++.+|+.||||++++|.+++..+.++.+++.+||+++|++ .|||+++|+|.||.|+
T Consensus 215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~h 280 (316)
T PLN03201 215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFH 280 (316)
T ss_pred CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhH
Confidence 9999999999999999999999999999988778999999999999974 8999999999999885
No 12
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=304.80 Aligned_cols=220 Identities=31% Similarity=0.590 Sum_probs=202.0
Q ss_pred HHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCChHH
Q 027177 6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (227)
Q Consensus 6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (227)
+++|..||.+.-+. +-.|. -.+.++.|..||.+.+|++|+.. +....+++|+||.+||.|.|||++.||+.+|++.
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~ 151 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP 151 (423)
T ss_pred HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence 89999999996432 33454 34799999999999999999964 3446789999999999999999999999999999
Q ss_pred HHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (227)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~ 160 (227)
||+|+.+|-+++. .+.|+++++.+||.++.++||||..+..++.|++.+|||+++-.+++.+.++-.+...+||.+|
T Consensus 152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C 231 (423)
T KOG0365|consen 152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC 231 (423)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence 9999999999975 4678899999999999999999999999999999999999999999987777778899999999
Q ss_pred cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCCCC
Q 027177 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~cy 227 (227)
|+.+|||+..|+.|.|..+||||+++|++++..+..+.+++.+|..+||. ..|||+||.||++|.||
T Consensus 232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCY 299 (423)
T KOG0365|consen 232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCY 299 (423)
T ss_pred ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhH
Confidence 99999999999999999999999999999999999999999999999997 89999999999999998
No 13
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=3.7e-45 Score=305.24 Aligned_cols=225 Identities=26% Similarity=0.488 Sum_probs=210.3
Q ss_pred cccHHHHHHHHHHcc-cCCCCcchhhcccchHHHHHHHHHHHHHhCC--CCCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (227)
..+++++++||+++| ++||+|.....+++++..||+++.+|.+++. ...++++++++||.++|++||||...++.++
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~ 125 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV 125 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence 467899999999999 9999999887788899999999999999997 3456889999999999999999999888899
Q ss_pred ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~ 159 (227)
|+..||+|+.+|.+++.....+++++++||.++|++||||+.++.+++|+.+|||++++|.+++..+.++++++++||++
T Consensus 126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~ 205 (286)
T cd02890 126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE 205 (286)
T ss_pred hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99999999999999987666779999999999999999999999999999999999999999999878899999999999
Q ss_pred ccCCCC-CcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHH-ccCccCCCcCCCCCCCCCCCC
Q 027177 160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 160 ~Q~~dG-Gf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~-~~Q~~~GGf~~~~~k~~D~cy 227 (227)
+|+++| ||..+|+.++|+.+|||++++|.+++..+..+.+++.+||+ .+|.++|||+++|+|++|.||
T Consensus 206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~ 275 (286)
T cd02890 206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYH 275 (286)
T ss_pred hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchh
Confidence 999998 99999999999999999999999999876688999999999 678999999999999999996
No 14
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.7e-43 Score=293.04 Aligned_cols=223 Identities=23% Similarity=0.377 Sum_probs=204.9
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (227)
+.++++.++||+++|+++|+|...+.+.+++..||+|+.+|.+++.. ..++++++++||.++|++||||...++.++
T Consensus 46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~ 125 (299)
T cd02893 46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV 125 (299)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence 35679999999999999999988877789999999999999999874 345788999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~ 159 (227)
|+..||+|+.++.+++.....+++++++||+++|++||||++.|++++|..+|||++++|.+++..+.++++++++||++
T Consensus 126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~ 205 (299)
T cd02893 126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA 205 (299)
T ss_pred hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence 99999999999999987766678999999999999999999999999999999999999999998777899999999999
Q ss_pred ccCC-CCCcCCCCCCCCchhhchHHHHHHHHhcCC-------------CCCCHHHHHHHHHcc-CccCCCcCCCCCCCCC
Q 027177 160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPD 224 (227)
Q Consensus 160 ~Q~~-dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-------------~~~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D 224 (227)
+|++ +|||..+|++.+|++||||++++|.+++.. ..++.+++.+||+.+ |..+|||+++|+|+||
T Consensus 206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D 285 (299)
T cd02893 206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD 285 (299)
T ss_pred hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence 9988 999999999999999999999999999864 236789999999965 5789999999999999
Q ss_pred C
Q 027177 225 V 225 (227)
Q Consensus 225 ~ 225 (227)
.
T Consensus 286 ~ 286 (299)
T cd02893 286 F 286 (299)
T ss_pred c
Confidence 4
No 15
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=4.6e-43 Score=301.62 Aligned_cols=223 Identities=19% Similarity=0.348 Sum_probs=205.7
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (227)
+.++++.++||.++|+++|+|+..+++.+++..||+++.+|.+++.. ..++++++++||+++|++||||...++.++
T Consensus 91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~ 170 (439)
T PLN02710 91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM 170 (439)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence 45778999999999999999998888889999999999999999864 356899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~ 159 (227)
|+..||+|++++.+++.++..+++++++||.+||+.||||++.|++++|..+|||++++|.++|..+.++++++++||.+
T Consensus 171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~ 250 (439)
T PLN02710 171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF 250 (439)
T ss_pred CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence 99999999999999998777789999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC--------------------------------------------
Q 027177 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH-------------------------------------------- 195 (227)
Q Consensus 160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~-------------------------------------------- 195 (227)
+|+.+|||..+|++.+|+.|+||++++|.++++.+.
T Consensus 251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T PLN02710 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV 330 (439)
T ss_pred hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999986411
Q ss_pred ---------------CCHHHHHHHHHcc-CccCCCcCCCCCCCCCC
Q 027177 196 ---------------VDKDLLGWWLCER-QVKSGGLNGRPEKLPDV 225 (227)
Q Consensus 196 ---------------~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D~ 225 (227)
.+.+++.+||+.+ |.++|||+.+|+|.||.
T Consensus 331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~ 376 (439)
T PLN02710 331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDY 376 (439)
T ss_pred ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCch
Confidence 3456889999998 57789999999999994
No 16
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-43 Score=280.47 Aligned_cols=223 Identities=35% Similarity=0.614 Sum_probs=195.2
Q ss_pred cccHHHHHHHHHHc-ccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCC---C-----CccC
Q 027177 3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---G-----GFAG 73 (227)
Q Consensus 3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~d---G-----gf~~ 73 (227)
++.++||++|+++. |--+-.|... +.+++..+||++.+|++|+..+.++++..|+|+.+.|-.. + ||-+
T Consensus 10 ~~~~~kH~~ff~RhL~llP~~y~sh--d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G 87 (347)
T KOG0367|consen 10 RFERKKHIKFFERHLQLLPSPYQSH--DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG 87 (347)
T ss_pred hhhHHHHHHHHHHHHHhCCCccccc--ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence 56789999999996 4455666544 5788999999999999999988888999999999987421 2 3433
Q ss_pred CC----------CCCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCccchhHHHHHHHH
Q 027177 74 NI----------GHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI 141 (227)
Q Consensus 74 ~~----------~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~-~~~~d~~~t~~a~~~L~~ 141 (227)
.. -.++|++.||++|..|..+++ ++.+|++.+++++..+|++||+|.... ++++|++++|||+++.++
T Consensus 88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym 167 (347)
T KOG0367|consen 88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM 167 (347)
T ss_pred eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence 21 135799999999999999976 578899999999999999999998654 468999999999999999
Q ss_pred hhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CC----CCHHHHHHHHHccCccCCCc
Q 027177 142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HH----VDKDLLGWWLCERQVKSGGL 215 (227)
Q Consensus 142 ~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~----~~~~~~~~wL~~~Q~~~GGf 215 (227)
++.+..++.++++.||++||+.||||+..|+.|+|..+|+||+++|.+++++ +. .++++.++|+..||..+|||
T Consensus 168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf 247 (347)
T KOG0367|consen 168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF 247 (347)
T ss_pred hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence 9998899999999999999999999999999999999999999999999986 32 34899999999999999999
Q ss_pred CCCCCCCCCCCC
Q 027177 216 NGRPEKLPDVVM 227 (227)
Q Consensus 216 ~~~~~k~~D~cy 227 (227)
+||+||++|+||
T Consensus 248 qGR~NKp~DTCY 259 (347)
T KOG0367|consen 248 QGRTNKPVDTCY 259 (347)
T ss_pred CCCCCCCchhHH
Confidence 999999999998
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=247.12 Aligned_cols=224 Identities=22% Similarity=0.373 Sum_probs=211.1
Q ss_pred CcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCCh
Q 027177 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (227)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (227)
.++++|+.+.|+++||+.+|+|...++.++.+..|..||.+|++.+..+..++++.+.|+...|++||+|.+-.-.+-+.
T Consensus 64 e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDT 143 (329)
T KOG0366|consen 64 ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDT 143 (329)
T ss_pred chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccch
Confidence 36789999999999999999999998888888899999999999998766799999999999999999998865557788
Q ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhcc
Q 027177 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (227)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q 161 (227)
..+++|+..|++|+.++.++++++|+|+.+|.|.||||+..|+.+++....||.+++|+++|.++..+.+..-.||...|
T Consensus 144 Rfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ 223 (329)
T KOG0366|consen 144 RFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQ 223 (329)
T ss_pred hhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCC
Q 027177 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDV 225 (227)
Q Consensus 162 ~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~ 225 (227)
.+.||...+|.+-||+.+.+|++++|+++|+++-++.+++.+||+.+|- +.|||+.||+..+|+
T Consensus 224 ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~ 288 (329)
T KOG0366|consen 224 LPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDI 288 (329)
T ss_pred CCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccH
Confidence 9999999999999999999999999999999988999999999999996 899999999988885
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-36 Score=242.33 Aligned_cols=222 Identities=21% Similarity=0.414 Sum_probs=204.2
Q ss_pred ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
.++|+.+-|+.+++.+.|+|+..+++.+.+..||+++.+|.+++.. ..++++...+||..+|+|||+|-...-.+.+
T Consensus 75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD 154 (342)
T COG5029 75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD 154 (342)
T ss_pred hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence 4678888999999999999999999999999999999999999754 3456778999999999999999876656788
Q ss_pred hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCccc-HHHHHHHHHh
Q 027177 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS 159 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~-~~~~~~~l~~ 159 (227)
....|.|+.++.+++.++..+.+.+++||++||+.||||+..|..+++..+||||+++|++++.++..+ +|++++||..
T Consensus 155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~ 234 (342)
T COG5029 155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE 234 (342)
T ss_pred HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 888999999999999888778899999999999999999999999999999999999999999988777 7999999999
Q ss_pred ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCC
Q 027177 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225 (227)
Q Consensus 160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~ 225 (227)
.|.+.|||..++++-+|+.+.||++++|++++..+-++.+++.+||+.+|.+ .|||+.||++.+|.
T Consensus 235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~ 301 (342)
T COG5029 235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDV 301 (342)
T ss_pred cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchH
Confidence 9999999999999999999999999999999988778999999999999755 99999999999983
No 19
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=219.94 Aligned_cols=192 Identities=21% Similarity=0.321 Sum_probs=177.0
Q ss_pred CcccHHHHHHHHHHcccCCCCcchhh-cccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 2 GELAADKHVKYIISVEKKKDSFESVV-MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~-~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
+++|++..++++..+|++||+|.... +.+++|+.+|+|++++.+|+....++.++.+.||+++|+-||||+..++.++|
T Consensus 123 srlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsH 202 (347)
T KOG0367|consen 123 SRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESH 202 (347)
T ss_pred hhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCC
Confidence 57999999999999999999997664 34789999999999999999766689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccC--C----CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHH
Q 027177 81 VLYTLSAVQVLALFDKV--D----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~--~----~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~ 154 (227)
.-+|+||+++|++++++ + ..++++.++|+..+|..+|||.+++++..|++|+||..++|.+++....++.++..
T Consensus 203 gG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr 282 (347)
T KOG0367|consen 203 GGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLR 282 (347)
T ss_pred cchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHH
Confidence 99999999999999875 2 33479999999999999999999999999999999999999999987777788999
Q ss_pred HHHHhccCCC-CCcCCCCCCCCchhhchHHHHHHHHhcCC
Q 027177 155 EYIVSCKNLD-GGFGCTPGGESHSGQIFCCVGALAIAGAL 193 (227)
Q Consensus 155 ~~l~~~Q~~d-GGf~~~~~~~~~~~~T~~al~aL~~~g~~ 193 (227)
+||++||.+- |||...|+..||+.+||++++||++++..
T Consensus 283 ~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 283 KFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred HHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCC
Confidence 9999999886 99999999999999999999999999864
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=3e-30 Score=213.97 Aligned_cols=222 Identities=27% Similarity=0.349 Sum_probs=192.2
Q ss_pred ccHHHHHHHHHHcccCCCCcchhhcc-cchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCC--
Q 027177 4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-- 77 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-- 77 (227)
.+++++++||.+.|++||+|.++... .++++.|++++.+|..++.. ....++++++||.++|++||+|......
T Consensus 52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 131 (300)
T cd00688 52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH 131 (300)
T ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence 46789999999999999999988655 67899999999999999864 2346889999999999999999876543
Q ss_pred -----CCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHH
Q 027177 78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (227)
Q Consensus 78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~ 151 (227)
.+++..|++++.+|..++... ...++++++||.++|++|||| .++..+++..|++++.+|..++......++
T Consensus 132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~ 209 (300)
T cd00688 132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK 209 (300)
T ss_pred cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence 678899999999999987643 335789999999999999999 467778899999999999998875456789
Q ss_pred HHHHHHHhccCCCCCcCCCC---CCCCchhhchHHHHHHHHhcCC-CCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177 152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227 (227)
Q Consensus 152 ~~~~~l~~~Q~~dGGf~~~~---~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy 227 (227)
++++||+++|.++|||...+ ...++...|++++.+|..++.. +...++++++||+++|..+|||...|++.+|+++
T Consensus 210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~ 289 (300)
T cd00688 210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH 289 (300)
T ss_pred HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence 99999999999999999775 5678899999999999998864 4456899999999999999999999999999874
No 21
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=211.33 Aligned_cols=222 Identities=21% Similarity=0.350 Sum_probs=196.5
Q ss_pred HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (227)
.++++.||..+|.|.|+|+.-++|-..+..||.+|.+|.+++..+ .+++++..+||.++.++||||-...+.+.++.
T Consensus 122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR 201 (423)
T KOG0365|consen 122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR 201 (423)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence 568999999999999999999999889999999999999999863 57999999999999999999999888899999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~ 162 (227)
+.|+|+..-.+++-..+.--+...+||.+||+.+|||++.|.-+++..||||++++|.+++..+..+.+++.+|..+.|.
T Consensus 202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm 281 (423)
T KOG0365|consen 202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM 281 (423)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence 99999998888876443224678999999999999999999999999999999999999999889999999999999997
Q ss_pred -CCCCcCCCCCCCCchhhchHHHHHHHHhcCC-----C-----CCCHHHHHHHHHcc-CccCCCcCCCCCCCCC---CCC
Q 027177 163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCER-QVKSGGLNGRPEKLPD---VVM 227 (227)
Q Consensus 163 -~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-----~-----~~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D---~cy 227 (227)
.+|||..+.++-.|..++||.-+...++... + -.+.+++.+|++.+ |.++|||..-|+|++| +||
T Consensus 282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY 361 (423)
T KOG0365|consen 282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY 361 (423)
T ss_pred hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence 6999999999999999999976655554321 1 14688899999985 9999999999999999 565
No 22
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.96 E-value=8.2e-29 Score=225.11 Aligned_cols=219 Identities=24% Similarity=0.285 Sum_probs=169.2
Q ss_pred HHHHHHHHHHccc--------------CCCCcchhhcc----cchHHHHHHHHHHHHHhCCC--------CCcCHHHHHH
Q 027177 6 ADKHVKYIISVEK--------------KKDSFESVVME----HLRLNGAYWGLTTLDILGKL--------DAVDEEDVIS 59 (227)
Q Consensus 6 ~~~~~~yl~~~q~--------------~dg~~~~~~~~----~~~~~~~y~~l~~l~ll~~~--------~~~~~~~~i~ 59 (227)
.+++++||++.|. ++|+|.+...+ .++. |--++.+|..+... ....++++++
T Consensus 330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~--Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~ 407 (634)
T TIGR03463 330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDC--TAEALSASLVLEPLGLNPEERVPQARLQDAVE 407 (634)
T ss_pred HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCcccc--HHHHHHHHHHHhhcCCcccccccHHHHHHHHH
Confidence 4689999999984 57888766322 2332 43466666654321 1125678999
Q ss_pred HHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCCC------C--CHHHHHHHHH
Q 027177 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI------L--DADKVSNYIV 110 (227)
Q Consensus 60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~------~--~~~~~~~~l~ 110 (227)
||+++||+||||+.+.. ..+++..|..+|.+|..+..... + .++++++||+
T Consensus 408 ~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~ 487 (634)
T TIGR03463 408 FILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLR 487 (634)
T ss_pred HHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 99999999999995432 35688999999999988764321 1 2688999999
Q ss_pred hccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCC----------CCCCCchhh
Q 027177 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQ 179 (227)
Q Consensus 111 ~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~~~ 179 (227)
+.|++||+|.+ .|+......|++++.+|...|.. ..+.++++++||+++|++||||+.. ++.+++++.
T Consensus 488 ~~Q~~dGsW~g-~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~ 566 (634)
T TIGR03463 488 SRQREDGSFPG-SWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVM 566 (634)
T ss_pred HhcCCCCCccc-cCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHH
Confidence 99999999976 46655556688888999888863 4567899999999999999999863 344688999
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177 180 IFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM 227 (227)
Q Consensus 180 T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy 227 (227)
|++||.+|..+|..+...++++++||+++|.++|||...+ +-.+-.||
T Consensus 567 TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~ 616 (634)
T TIGR03463 567 TSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAM 616 (634)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCccee
Confidence 9999999999997766779999999999999999998765 55666665
No 23
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.96 E-value=4.4e-28 Score=200.98 Aligned_cols=218 Identities=34% Similarity=0.519 Sum_probs=182.8
Q ss_pred HHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC------CCcCHHHHHHHHHhccCCCCCccCCCCC-CC
Q 027177 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-DP 79 (227)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~~ 79 (227)
+++++||++.|.++|++.... ....++.+++++.++..+... ....++++++||.+.|++||||+...+. .+
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~ 80 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80 (300)
T ss_pred hhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence 689999999999999873322 244677888999988887652 2347889999999999999999998776 78
Q ss_pred ChHHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCC-------CCCccchhHHHHHHHHhhccC-cc
Q 027177 80 HVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-KI 148 (227)
Q Consensus 80 ~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~-------~~d~~~t~~a~~~L~~~g~~~-~~ 148 (227)
++..|++++.+|..++.. ....++++++||.+.|++||+|...... .+++..|++++.+|..++... ..
T Consensus 81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~ 160 (300)
T cd00688 81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160 (300)
T ss_pred chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence 999999999999988763 2234788999999999999999875432 578888999999999988743 56
Q ss_pred cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC---CCCCCC
Q 027177 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPDV 225 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~---~k~~D~ 225 (227)
.++++++||.++|++|||| .+..++++..|++++.+|..++......++++++||+++|..+|||...+ ++.+|.
T Consensus 161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~ 238 (300)
T cd00688 161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS 238 (300)
T ss_pred HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence 7899999999999999999 56678999999999999999987545668999999999999999999886 777777
Q ss_pred CC
Q 027177 226 VM 227 (227)
Q Consensus 226 cy 227 (227)
|+
T Consensus 239 ~~ 240 (300)
T cd00688 239 CY 240 (300)
T ss_pred HH
Confidence 64
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.96 E-value=1.7e-27 Score=216.40 Aligned_cols=213 Identities=20% Similarity=0.198 Sum_probs=163.6
Q ss_pred HHHHHHHHHHccc-------------CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccC
Q 027177 6 ADKHVKYIISVEK-------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD 66 (227)
Q Consensus 6 ~~~~~~yl~~~q~-------------~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~ 66 (227)
..++.+||++.|. +.|+|++.... .+++..|-.++.+|..++.+. ...++++++||+++|+
T Consensus 338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn 417 (635)
T TIGR01507 338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS 417 (635)
T ss_pred HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence 4688999999863 35777655322 356777888888888875322 2368899999999999
Q ss_pred CCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 027177 67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE 126 (227)
Q Consensus 67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~ 126 (227)
+||||+.+.. +++.+..|..++.+|...+.. ....++++++||++.|++||||.+ .++.
T Consensus 418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g-~wg~ 496 (635)
T TIGR01507 418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFG-RWGV 496 (635)
T ss_pred CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCcc-CCCC
Confidence 9999976431 235677899999999887532 122378999999999999999965 3555
Q ss_pred CCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchHHHHHHHHhcCCCC
Q 027177 127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGALHH 195 (227)
Q Consensus 127 ~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~al~aL~~~g~~~~ 195 (227)
.++..|..++.+|...|. ...+.++++++||+++|++||||++.. ..+++++.|++||.+|..++..+.
T Consensus 497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~ 576 (635)
T TIGR01507 497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES 576 (635)
T ss_pred ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 444445556666766664 235678999999999999999999652 236889999999999999997766
Q ss_pred CCHHHHHHHHHccCccCCCcCCCC
Q 027177 196 VDKDLLGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 196 ~~~~~~~~wL~~~Q~~~GGf~~~~ 219 (227)
..++++++||+++|+++|||.-..
T Consensus 577 ~~I~rav~~L~~~Q~~dG~W~e~~ 600 (635)
T TIGR01507 577 EAARRGVQYLVETQRPDGGWDEPY 600 (635)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcc
Confidence 679999999999999999997653
No 25
>PLN03012 Camelliol C synthase
Probab=99.96 E-value=1.2e-27 Score=217.44 Aligned_cols=174 Identities=22% Similarity=0.277 Sum_probs=138.6
Q ss_pred CHHHHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCC------CC--CHH
Q 027177 53 DEEDVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DAD 103 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~ 103 (227)
...++++||++.||+||||+.+.. +++...+|..+|.+|.+++... ++ .++
T Consensus 514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~ 593 (759)
T PLN03012 514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK 593 (759)
T ss_pred HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence 467999999999999999986643 3567788999999998876531 12 268
Q ss_pred HHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCC---------
Q 027177 104 KVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG--------- 172 (227)
Q Consensus 104 ~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~--------- 172 (227)
++++||++.|++||||.+ .|+...+.-|.+++.+|...|.. ..+.++|+++||++.|++||||+++..
T Consensus 594 rAv~~L~~~Q~~DGsW~G-~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~ 672 (759)
T PLN03012 594 KAAEYIENIQMLDGSWYG-NWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA 672 (759)
T ss_pred HHHHHHHHhcCCCCCCcc-cccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence 899999999999999997 45554444455667778777873 236799999999999999999998742
Q ss_pred ---CCCchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177 173 ---GESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM 227 (227)
Q Consensus 173 ---~~~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy 227 (227)
.+|+++.|+|||.+|..+|..+. ..++|+++||+++|.++|+|.-.. +.++-.||
T Consensus 673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~ 734 (759)
T PLN03012 673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL 734 (759)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence 35889999999999999997643 368999999999999999996543 44555564
No 26
>PLN02993 lupeol synthase
Probab=99.95 E-value=4.1e-27 Score=214.52 Aligned_cols=219 Identities=20% Similarity=0.261 Sum_probs=163.6
Q ss_pred HHHHHHHHHHcccC---------------CCCcchhhcc----cchHHHHHHHHHHHHHhCCC------C---CcCHHHH
Q 027177 6 ADKHVKYIISVEKK---------------KDSFESVVME----HLRLNGAYWGLTTLDILGKL------D---AVDEEDV 57 (227)
Q Consensus 6 ~~~~~~yl~~~q~~---------------dg~~~~~~~~----~~~~~~~y~~l~~l~ll~~~------~---~~~~~~~ 57 (227)
..++.+||++.|.. .|+|.+...+ .+|. |-=+++++.+|... . ...+.++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDd--TAe~lka~l~l~~~~~~~~~~~~~~~~l~~a 518 (763)
T PLN02993 441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDC--TAEALKCCMLLSMMPADVVGQKIDPEQLYDS 518 (763)
T ss_pred HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCc--hHHHHHHHHHHhhCccccccccchHHHHHHH
Confidence 45788999998763 2666433211 2332 32355543333321 1 1246699
Q ss_pred HHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC------CCC--CHHHHHHH
Q 027177 58 ISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV------DIL--DADKVSNY 108 (227)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~------~~~--~~~~~~~~ 108 (227)
++||++.||+||||+.+.. +++.+..|..+|.+|..++.. +++ .++++++|
T Consensus 519 v~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~y 598 (763)
T PLN02993 519 VNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQF 598 (763)
T ss_pred HHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHH
Confidence 9999999999999997642 257889999999999988642 111 26889999
Q ss_pred HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccC--cccHHHHHHHHHhccCCCCCcCCCC------------CCC
Q 027177 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGE 174 (227)
Q Consensus 109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~------------~~~ 174 (227)
|++.|++||+|.+ .|+...+..|++++.+|...|... .+.++|+++||+++|++||||+++. ++.
T Consensus 599 L~~~Q~~DGSW~G-~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~ 677 (763)
T PLN02993 599 IESKQTPDGSWYG-NWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNR 677 (763)
T ss_pred HHHhcCCCCCccc-ccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCC
Confidence 9999999999987 577766666778888888888753 2579999999999999999999853 235
Q ss_pred CchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCccCCCcCCC--CCCCCCCCC
Q 027177 175 SHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVVM 227 (227)
Q Consensus 175 ~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~k~~D~cy 227 (227)
|+++.|++|+.+|..+|..+. ..++|+++||+++|.++|+|.-. .+-++-.||
T Consensus 678 St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 678 SNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred CchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 889999999999999997543 35899999999999999998653 255666665
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.94 E-value=2e-26 Score=210.68 Aligned_cols=212 Identities=24% Similarity=0.305 Sum_probs=161.8
Q ss_pred HHHHHHHHHHccc--------------CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC-------CcCHHHHHHHHH
Q 027177 6 ADKHVKYIISVEK--------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWIL 62 (227)
Q Consensus 6 ~~~~~~yl~~~q~--------------~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~-------~~~~~~~i~~l~ 62 (227)
.+++++||++.|. +.|+|.+.... ..+.-.|..++.+|..++... ...++++++||+
T Consensus 331 l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl 410 (634)
T cd02892 331 LKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLL 410 (634)
T ss_pred HHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHH
Confidence 4689999999985 45677643211 122335667888888776542 125779999999
Q ss_pred hccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCCCC-------CHHHHHHHHHhccC
Q 027177 63 KCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQN 114 (227)
Q Consensus 63 ~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q~ 114 (227)
++|++||||..+.. ..+++..|.+++.+|..++..... .++++++||++.|+
T Consensus 411 ~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~ 490 (634)
T cd02892 411 GMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQE 490 (634)
T ss_pred hccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccC
Confidence 99999999985321 146778899999999988654321 36889999999999
Q ss_pred CCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchH
Q 027177 115 EDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFC 182 (227)
Q Consensus 115 ~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~ 182 (227)
+||+|.+ .++...+..|+.++.+|...|.. ....++++++||+++|++||||+..+ +.++++..|++
T Consensus 491 ~DGsW~g-~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~ 569 (634)
T cd02892 491 PDGSWYG-RWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAW 569 (634)
T ss_pred CCCCccc-cCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHH
Confidence 9999976 45544444566677788877763 34578999999999999999998642 34688899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 183 al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
||.+|..++..+...++++++||+++|.++|+|.-.
T Consensus 570 AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 570 ALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence 999999998876667899999999999999999653
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.94 E-value=5.9e-26 Score=194.31 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=159.7
Q ss_pred cHHHHHHHHHHcc--------------cCCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC-------CcCHHHHHHHH
Q 027177 5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI 61 (227)
Q Consensus 5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~-------~~~~~~~i~~l 61 (227)
.++++++||.+.| .++|+|.+.... ..+.-.|-+++.+|..++... +..++++++||
T Consensus 47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L 126 (348)
T cd02889 47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL 126 (348)
T ss_pred HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence 3579999999999 688988754321 122224556777776666432 23577999999
Q ss_pred HhccCCCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccCCCC-------CHHHHHHHHHhccCC
Q 027177 62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQNE 115 (227)
Q Consensus 62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q~~ 115 (227)
+++|++||+|..... ..+++..|.+++.+|..++..... .++++++||.+.|++
T Consensus 127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~ 206 (348)
T cd02889 127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP 206 (348)
T ss_pred HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999985422 235678899999999887754221 257899999999999
Q ss_pred CCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCC----------CCCCCchhhchHHH
Q 027177 116 DGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV 184 (227)
Q Consensus 116 dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~~~T~~al 184 (227)
||+|.. .++......|.+++.+|...|. .....++++++||+++|++||||+.. +...+++..|+++|
T Consensus 207 dG~w~~-~~~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al 285 (348)
T cd02889 207 DGSWYG-RWGVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL 285 (348)
T ss_pred CCCccc-cCCCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence 999965 3333333445566677777775 23567899999999999999999863 23467889999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 185 ~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
.+|..++..+.+.++++++||.++|+++|||..
T Consensus 286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 999999876556789999999999999999976
No 29
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.93 E-value=4e-25 Score=200.80 Aligned_cols=213 Identities=23% Similarity=0.225 Sum_probs=152.3
Q ss_pred HHHHHHHHHHcccCC---------------CCcchhhccc--chHHHHHHHHHHHHHhCC-CC---CcCHHHHHHHHHhc
Q 027177 6 ADKHVKYIISVEKKK---------------DSFESVVMEH--LRLNGAYWGLTTLDILGK-LD---AVDEEDVISWILKC 64 (227)
Q Consensus 6 ~~~~~~yl~~~q~~d---------------g~~~~~~~~~--~~~~~~y~~l~~l~ll~~-~~---~~~~~~~i~~l~~~ 64 (227)
..++++||.+.|.++ |+|.+...++ .++-.|-.++..+.++.. .. ...++++++||+++
T Consensus 321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~ 400 (621)
T TIGR01787 321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM 400 (621)
T ss_pred HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence 578999999998866 5554321110 022223223333333322 11 23567999999999
Q ss_pred cCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC-CC--CCHHHHHHHHHhccCCCCCcc
Q 027177 65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-DI--LDADKVSNYIVGLQNEDGSFS 120 (227)
Q Consensus 65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~~--~~~~~~~~~l~~~Q~~dGg~~ 120 (227)
|++||||+.+.. ..+.+..|..+|.+|..++.. +. ..++++++||++.|++||+|.
T Consensus 401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~ 480 (621)
T TIGR01787 401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF 480 (621)
T ss_pred cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence 999999985431 123456899999999877531 11 237899999999999999997
Q ss_pred cCCCCCCCccchhHHHHHHHHhhccC--cccHHHHHHHHHhccCCCCCcCCCCC----------CCCchhhchHHHHHHH
Q 027177 121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTPG----------GESHSGQIFCCVGALA 188 (227)
Q Consensus 121 ~~~~~~~d~~~t~~a~~~L~~~g~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~----------~~~~~~~T~~al~aL~ 188 (227)
+ .++...+..|..++.+|..+|... ...++++++||+++|++||||++... ..|++..|++||.+|.
T Consensus 481 g-~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 481 G-RWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred c-cCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 6 455443444556667787777642 25689999999999999999986532 3688999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHccCccCCCcCCCC
Q 027177 189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 189 ~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~ 219 (227)
.++..+...++++++||+++|+++|||...+
T Consensus 560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 560 AAGEADSEAIERGVKYLLETQRPDGDWPQEY 590 (621)
T ss_pred HcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 9987655579999999999999999996543
No 30
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.93 E-value=1.7e-24 Score=185.31 Aligned_cols=208 Identities=18% Similarity=0.216 Sum_probs=160.8
Q ss_pred HHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhcc--------------CCCCC
Q 027177 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESGG 70 (227)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q--------------~~dGg 70 (227)
+++++||.+.|++||+|.... ++++.|.+++.+|...+.. ....++++++||++.| .++||
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 688999999999999998553 6788898899998888763 2346889999999999 68999
Q ss_pred ccCCCC--CCCChHHHHHHHHHHHhcccCC----CC---CHHHHHHHHHhccCCCCCcccCCC-----------------
Q 027177 71 FAGNIG--HDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGDIW----------------- 124 (227)
Q Consensus 71 f~~~~~--~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGg~~~~~~----------------- 124 (227)
|..... ..+++..|..++.+|..+.... .+ .+.++++||.+.|++||+|.....
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI 158 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence 876432 2355667888888887765432 11 268899999999999999984311
Q ss_pred --CCCCccchhHHHHHHHHhhccCc-------ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC-
Q 027177 125 --GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH- 194 (227)
Q Consensus 125 --~~~d~~~t~~a~~~L~~~g~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~- 194 (227)
..+++..|..++.+|..++.... +.++++++||+++|++||||....+ .++.+.|++++.+|..+|...
T Consensus 159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~ 237 (348)
T cd02889 159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDEN 237 (348)
T ss_pred ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcC
Confidence 12345567777888887776322 4578999999999999999975433 356778999999999988642
Q ss_pred CCCHHHHHHHHHccCccCCCcCCC
Q 027177 195 HVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 195 ~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
...++++++||+++|.++|||...
T Consensus 238 ~~~~~~~~~~L~~~Q~~dG~w~~~ 261 (348)
T cd02889 238 SPYVRKACDWLLSKQNPDGGWGES 261 (348)
T ss_pred cHHHHHHHHHHHHccCCCCCcCCc
Confidence 345789999999999999999864
No 31
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.89 E-value=4.7e-22 Score=153.25 Aligned_cols=205 Identities=15% Similarity=0.207 Sum_probs=157.5
Q ss_pred cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHh-ccCCCCCccCC-------
Q 027177 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN------- 74 (227)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~-~q~~dGgf~~~------- 74 (227)
..++++.++||..+|+.||+|+.+..-+..+.-||||+.++.+|+..++ .++++++||.+ .|...+|++..
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l 83 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL 83 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5788999999999999999999998767778999999999999998754 89999999988 45555555310
Q ss_pred ---------------------------C------CCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCccc
Q 027177 75 ---------------------------I------GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121 (227)
Q Consensus 75 ---------------------------~------~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~ 121 (227)
. +...-+..||....+|.+.+.. -.+...+|+.+-|+.+|++.+
T Consensus 84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~ 160 (274)
T COG1689 84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA 160 (274)
T ss_pred cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence 0 1122367888888888887631 135677888888888877665
Q ss_pred CCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCC-CCchhhchHHHHHHHHhcCCCCCCHHH
Q 027177 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL 200 (227)
Q Consensus 122 ~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~~ 200 (227)
---..+.+..||.|+.+|...+ .++....|=.+|-. +|||..+|++ +|+...|++|+.+|.+++.. -.+.+
T Consensus 161 YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c~~-~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~ 232 (274)
T COG1689 161 YGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCCGD-WGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD 232 (274)
T ss_pred cccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcccc-CCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence 4334455667776666554433 25666677666765 8999999975 78999999999999999975 34789
Q ss_pred HHHHHHccCccCCCcCCCC
Q 027177 201 LGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 201 ~~~wL~~~Q~~~GGf~~~~ 219 (227)
.++|+.+.||++|||+...
T Consensus 233 ~~rFI~slqN~nGGFRRS~ 251 (274)
T COG1689 233 HIRFIRSLQNQNGGFRRSY 251 (274)
T ss_pred HHHHHHHhhcCCCCeeeeE
Confidence 9999999999999998643
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.88 E-value=6.6e-23 Score=147.85 Aligned_cols=109 Identities=34% Similarity=0.618 Sum_probs=90.9
Q ss_pred HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCCHHHH--HHHHHhccCCCCCcccCCC-CCCCccchhH
Q 027177 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDIW-GEVDTRFSYI 134 (227)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~Q~~dGg~~~~~~-~~~d~~~t~~ 134 (227)
|+||+++|++||||+.. +.++++..|+.++.+|..++... +++++ ++||+++|++||||...+. ..+|+..|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 77899999999999999987644 47778 9999999999999999874 5678999999
Q ss_pred HHHHHHHhhccCc-ccHHHHHHHHHhccCCCCCcCC
Q 027177 135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC 169 (227)
Q Consensus 135 a~~~L~~~g~~~~-~~~~~~~~~l~~~Q~~dGGf~~ 169 (227)
++.+|.+++.... +.++++++||+++|++||||++
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999987543 6789999999999999999985
No 33
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.88 E-value=2.3e-21 Score=176.40 Aligned_cols=212 Identities=19% Similarity=0.085 Sum_probs=153.2
Q ss_pred cHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccC-------------CCC
Q 027177 5 AADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQD-------------ESG 69 (227)
Q Consensus 5 ~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~-------------~dG 69 (227)
.+.+|+++|.+-.. .+|++...+ ..+.+|.|.+++.+|...+.. +...++|+.+||+++|. +.|
T Consensus 288 ~~~~~l~~l~~~~~~~~~g~~~~~-~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~G 366 (635)
T TIGR01507 288 FIKLGWEGIDLYGVELDDSWMFQA-CVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPG 366 (635)
T ss_pred HHHHHHHHHHHheEecCCceEecC-CCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCC
Confidence 35679999977543 455543322 245789998898888877743 23467899999999873 358
Q ss_pred CccCC--CCCCCChHHHHHHHHHHHhcccCC----CCCHHHHHHHHHhccCCCCCcccCCC------------C------
Q 027177 70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW------------G------ 125 (227)
Q Consensus 70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGg~~~~~~------------~------ 125 (227)
||+.. +...|++..|..+|.+|..++... ...++++++||.++|++||||..... +
T Consensus 367 GW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~ 446 (635)
T TIGR01507 367 GWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVT 446 (635)
T ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCcccccccc
Confidence 88775 334689999999999998874211 12378999999999999999975211 0
Q ss_pred -CCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC-CCCCHHHHH
Q 027177 126 -EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLG 202 (227)
Q Consensus 126 -~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~ 202 (227)
.+++..|-.++.+|...+.. ....++++++||++.|++||||....+ ..+.+.|+.++.+|...|.. ....+++++
T Consensus 447 D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv 525 (635)
T TIGR01507 447 DPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKAL 525 (635)
T ss_pred CCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 11222244444555555432 245789999999999999999955555 46788899999999988753 235689999
Q ss_pred HHHHccCccCCCcCCC
Q 027177 203 WWLCERQVKSGGLNGR 218 (227)
Q Consensus 203 ~wL~~~Q~~~GGf~~~ 218 (227)
+||+++|++||||+..
T Consensus 526 ~wL~~~Q~~DGGWge~ 541 (635)
T TIGR01507 526 AWLESHQNPDGGWGED 541 (635)
T ss_pred HHHHHhcCCCCCCCCC
Confidence 9999999999999844
No 34
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.88 E-value=1.3e-21 Score=178.24 Aligned_cols=212 Identities=17% Similarity=0.156 Sum_probs=148.9
Q ss_pred HHHHHHHHHHccc--CCCCcchhhcccchHHHHHHHHHHHHHhCCCC-C--cCHHHHHHHHHhccC--------------
Q 027177 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-A--VDEEDVISWILKCQD-------------- 66 (227)
Q Consensus 6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~-~--~~~~~~i~~l~~~q~-------------- 66 (227)
..+|+++|.+..- ++|+..... -.+..|.|-+++.+|...+..+ + ..++++++||+++|.
T Consensus 278 ~~k~l~~l~~~~~~~~~~g~~~q~-~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 278 VAAHLEGLEDYRYEDDDRGLRYNG-YNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHhhEEEcCCCCEEEee-CCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 5689999998753 453321111 2234488877777776555321 1 346799999999994
Q ss_pred CCCCccCCC--CCCCChHHHHHHHHHHHhcccC-----CCC---CHHHHHHHHHhccCCCCCcccCCC------------
Q 027177 67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV-----DIL---DADKVSNYIVGLQNEDGSFSGDIW------------ 124 (227)
Q Consensus 67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~-----~~~---~~~~~~~~l~~~Q~~dGg~~~~~~------------ 124 (227)
+.|||+... ...++...|..+|.+|..+... +.+ .+.++++||+++|++||||+....
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 468888763 3457788998888888765421 111 257899999999999999994311
Q ss_pred ------CCCCccchhH---HHHHHHHhhccC--------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHH
Q 027177 125 ------GEVDTRFSYI---AICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (227)
Q Consensus 125 ------~~~d~~~t~~---a~~~L~~~g~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL 187 (227)
-..|..+..+ ++.+|..++... ...++++++||++.|++||||....+ ....+.|++++.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence 0113334444 445555554422 12578999999999999999977655 35677899999999
Q ss_pred HHhcCC-CCCCHHHHHHHHHccCccCCCcCCCC
Q 027177 188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 188 ~~~g~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~ 219 (227)
..+|.. +...++++++||+++|++||||+.+.
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~ 548 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVY 548 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCcc
Confidence 998864 44568999999999999999998754
No 35
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.88 E-value=4.3e-21 Score=175.71 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=156.1
Q ss_pred HHHHHHHHHHcc--cCCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccC--------------C
Q 027177 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--------------E 67 (227)
Q Consensus 6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~--------------~ 67 (227)
..+|+++|.+.. .+||...... ..+.+|.|-+++.+|.-.+.. ....++++++||++.|. +
T Consensus 280 ~~~~l~~l~~~~~~~~~g~~~~~~-~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~ 358 (634)
T cd02892 280 FKRHLERIDDFLWLGPEGMKMCQT-NGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR 358 (634)
T ss_pred HHHHHHHHHhcEEEecCCcEEEcC-CCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence 568888888854 5677753222 355689998888888766643 22367899999999995 3
Q ss_pred CCCccCC--CCCCCChHHHHHHHHHHHhcccCC----CC---CHHHHHHHHHhccCCCCCcccC-CCC------------
Q 027177 68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IWG------------ 125 (227)
Q Consensus 68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGg~~~~-~~~------------ 125 (227)
.|||+.. +...+++..|..++.+|..+.... .+ .++++++||.++|++||||... +..
T Consensus 359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e 438 (634)
T cd02892 359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE 438 (634)
T ss_pred CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence 5777653 233567888999999988776432 12 2578999999999999999842 110
Q ss_pred --------CCCccchhHHHHHHHHhhccCc-------ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177 126 --------EVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (227)
Q Consensus 126 --------~~d~~~t~~a~~~L~~~g~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~ 190 (227)
.+.+..|..++.+|..++.... ..++++++||+++|++||||..+.+ ..+.+.|++++.+|..+
T Consensus 439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~ 517 (634)
T cd02892 439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAA 517 (634)
T ss_pred hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHh
Confidence 1234457777888887776332 3588999999999999999976654 46778899999999999
Q ss_pred cCC--CCCCHHHHHHHHHccCccCCCcCCC
Q 027177 191 GAL--HHVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 191 g~~--~~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
|.. ....++++++||+++|++||||+..
T Consensus 518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~ 547 (634)
T cd02892 518 GEDYENSPYIRKACDFLLSKQNPDGGWGES 547 (634)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCCCCCCc
Confidence 864 2346899999999999999999854
No 36
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.88 E-value=2.4e-21 Score=162.44 Aligned_cols=195 Identities=14% Similarity=0.090 Sum_probs=147.1
Q ss_pred HHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCC---------
Q 027177 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI--------- 75 (227)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~--------- 75 (227)
++++.+.+.|++||+|+.|...+.++|.|.+++.+|....... +..++++++||++.|++||+|....
T Consensus 56 ~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~g 135 (297)
T cd02896 56 QGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTG 135 (297)
T ss_pred HHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccC
Confidence 3444445569999999999877889999999999999887532 2357799999999999999998642
Q ss_pred C---CCCChHHHHHHHHHHHhcccCCC-------CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc
Q 027177 76 G---HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL 145 (227)
Q Consensus 76 ~---~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~ 145 (227)
+ .++++..|.+++.+|...+.... ..++++++||.+.|.+ ..++..+..++.+|.+.|..
T Consensus 136 g~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~ 205 (297)
T cd02896 136 GVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADSP 205 (297)
T ss_pred CccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh
Confidence 1 13678889999999988754321 1368899999998643 12222233344566666653
Q ss_pred CcccHHHHHHHHHhccCCCCCcCCCC-----------CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177 146 DKINVDKAVEYIVSCKNLDGGFGCTP-----------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214 (227)
Q Consensus 146 ~~~~~~~~~~~l~~~Q~~dGGf~~~~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG 214 (227)
..+++.++|++.|+.||||++.. ....+++.|+|||.++...+.. ....++++||.++|+.+||
T Consensus 206 ---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~~~Gg 280 (297)
T cd02896 206 ---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRNYGGG 280 (297)
T ss_pred ---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCCCCCC
Confidence 56889999999999999998531 1123789999999999988744 3588899999999999999
Q ss_pred cCC
Q 027177 215 LNG 217 (227)
Q Consensus 215 f~~ 217 (227)
|..
T Consensus 281 f~s 283 (297)
T cd02896 281 FGS 283 (297)
T ss_pred eeh
Confidence 974
No 37
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.87 E-value=2.8e-22 Score=144.52 Aligned_cols=108 Identities=29% Similarity=0.450 Sum_probs=91.1
Q ss_pred HHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHH--HHHHHhccCCCCCcCCCC-CCCCchhhchH
Q 027177 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC 182 (227)
Q Consensus 106 ~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~--~~~l~~~Q~~dGGf~~~~-~~~~~~~~T~~ 182 (227)
|+||+++|++||||... ...+++..|+.++.+|..++... +.+++ ++||+++|++||||...+ +.+++...|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999986 67888999999999999998744 47778 999999999999999998 45788999999
Q ss_pred HHHHHHHhcCCCC-CCHHHHHHHHHccCccCCCcC
Q 027177 183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 183 al~aL~~~g~~~~-~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
++++|..++..+. ..++++++||+++|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999997654 678999999999999999997
No 38
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.86 E-value=3.9e-20 Score=154.89 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=143.9
Q ss_pred HHHHHHHHHH-------cccCCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccC
Q 027177 6 ADKHVKYIIS-------VEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG 73 (227)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~ 73 (227)
++++++||+. .|++||+|+.+... +++.|.|.+++.+|....... +..++++++||++.|++||||..
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4567777775 69999999988654 778999999999999887532 23688999999999999999985
Q ss_pred CC---------CCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177 74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (227)
Q Consensus 74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g 143 (227)
.. +..+.+..|.+++.+|...+... ...++++++||.+.+.+ ..++..+..++.+|.+.|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG 193 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence 32 12355778999999998876532 22368999999997643 223334445566777777
Q ss_pred ccCcccHHHHHHHHH---hccCCCCCcCCCC-----------CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC
Q 027177 144 RLDKINVDKAVEYIV---SCKNLDGGFGCTP-----------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (227)
Q Consensus 144 ~~~~~~~~~~~~~l~---~~Q~~dGGf~~~~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q 209 (227)
.. ..+++++++. ..++.+|+|+..+ ...++++.|.|+|.+|...+..+...+.++++||.++|
T Consensus 194 ~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 SE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR 270 (292)
T ss_pred Cc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence 32 2345555544 3455678887431 12468889999999998887423345778899999999
Q ss_pred ccCCCcCC
Q 027177 210 VKSGGLNG 217 (227)
Q Consensus 210 ~~~GGf~~ 217 (227)
+.+|||..
T Consensus 271 ~~~Ggf~s 278 (292)
T cd02897 271 NSLGGFSS 278 (292)
T ss_pred CCCCCccc
Confidence 99999975
No 39
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.85 E-value=3.5e-20 Score=168.66 Aligned_cols=211 Identities=19% Similarity=0.166 Sum_probs=149.6
Q ss_pred HHHHHHHHHHc--ccCCCCcchhhcccchHHHHHHHHHHHHHhCC---C-CCcCHHHHHHHHHhccCCC-----------
Q 027177 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK---L-DAVDEEDVISWILKCQDES----------- 68 (227)
Q Consensus 6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~---~-~~~~~~~~i~~l~~~q~~d----------- 68 (227)
..+|++.|++. ..+||.+.- ...+.+|.|-+++.+|...+. . ....++++++||+++|..+
T Consensus 269 ~~~~l~~l~~~~~~~~dg~~~q--~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~ 346 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQLDGMKMQ--GTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH 346 (621)
T ss_pred HHHHHHHHhhcEEEeCCccEEe--cCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence 56888888876 557776531 125678999888888876663 2 2236889999999999866
Q ss_pred ----CCccCC--CCCCCChHHHHHHHHHHHhccc-CCCC---CHHHHHHHHHhccCCCCCcccCCC-C---------C--
Q 027177 69 ----GGFAGN--IGHDPHVLYTLSAVQVLALFDK-VDIL---DADKVSNYIVGLQNEDGSFSGDIW-G---------E-- 126 (227)
Q Consensus 69 ----Ggf~~~--~~~~~~~~~T~~al~~L~~l~~-~~~~---~~~~~~~~l~~~Q~~dGg~~~~~~-~---------~-- 126 (227)
|||+.. ....|++..|..++.++.++.. .+.. .++++++||.+.|++||||+.... . .
T Consensus 347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e 426 (621)
T TIGR01787 347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE 426 (621)
T ss_pred CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence 666543 2334677777776655544432 1122 257899999999999999984211 0 0
Q ss_pred ------CC---ccchhHHHHHHHHhhcc---CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC
Q 027177 127 ------VD---TRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (227)
Q Consensus 127 ------~d---~~~t~~a~~~L~~~g~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~ 194 (227)
.| +..|..++.+|..++.. ....++++++||+++|++||+|..+.+. .+.+.|.+++.+|..+|...
T Consensus 427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~ 505 (621)
T TIGR01787 427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTY 505 (621)
T ss_pred hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcc
Confidence 12 23455666667666531 1346899999999999999999876653 55677999999999998652
Q ss_pred --CCCHHHHHHHHHccCccCCCcCCCC
Q 027177 195 --HVDKDLLGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 195 --~~~~~~~~~wL~~~Q~~~GGf~~~~ 219 (227)
...++++++||+++|++||||+..+
T Consensus 506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~ 532 (621)
T TIGR01787 506 RNCPEVQKACDWLLSRQMPDGGWGEDC 532 (621)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCCcCC
Confidence 2458999999999999999998654
No 40
>PLN03012 Camelliol C synthase
Probab=99.85 E-value=2.4e-20 Score=170.18 Aligned_cols=184 Identities=17% Similarity=0.136 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcccCCCCcchhhc---------------------ccchHHHHHHHHHHHHHhCCCC--------CcCHHH
Q 027177 6 ADKHVKYIISVEKKKDSFESVVM---------------------EHLRLNGAYWGLTTLDILGKLD--------AVDEED 56 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~---------------------~~~~~~~~y~~l~~l~ll~~~~--------~~~~~~ 56 (227)
..++++||.+.||+||||..+.. +++..-.|--+|.+|.+++... ...+++
T Consensus 515 l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~r 594 (759)
T PLN03012 515 LHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKK 594 (759)
T ss_pred HHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHH
Confidence 45899999999999999865432 2333334556788888876531 124779
Q ss_pred HHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC--CCHHHHHHHHHhccCCCCCcccCCC----------
Q 027177 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI--LDADKVSNYIVGLQNEDGSFSGDIW---------- 124 (227)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~--~~~~~~~~~l~~~Q~~dGg~~~~~~---------- 124 (227)
+++||++.|++||||++..+. ..++.|.+||.+|..++.... ..++|+++||++.|++||||+++-.
T Consensus 595 Av~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~ 673 (759)
T PLN03012 595 AAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ 673 (759)
T ss_pred HHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence 999999999999999988773 566799999999998875322 3479999999999999999997521
Q ss_pred --CCCCccchhHHHHHHHHhhccCc--ccHHHHHHHHHhccCCCCCcCCCC--CC-------CCchhhchHHHHHHHHh
Q 027177 125 --GEVDTRFSYIAICCLSILQRLDK--INVDKAVEYIVSCKNLDGGFGCTP--GG-------ESHSGQIFCCVGALAIA 190 (227)
Q Consensus 125 --~~~d~~~t~~a~~~L~~~g~~~~--~~~~~~~~~l~~~Q~~dGGf~~~~--~~-------~~~~~~T~~al~aL~~~ 190 (227)
+.+.+..|.||+.+|...|.... ..++|+++||++.|.+||+|.... |. .-+.+.-++.|.||...
T Consensus 674 ~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y 752 (759)
T PLN03012 674 EGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEY 752 (759)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHH
Confidence 24677889999999998887432 468999999999999999997642 11 12333444566666543
No 41
>PLN02993 lupeol synthase
Probab=99.85 E-value=2.5e-20 Score=170.36 Aligned_cols=189 Identities=18% Similarity=0.132 Sum_probs=139.7
Q ss_pred cchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccCC-----C----------CCccCC--CCCCCChHHHHHHHHH
Q 027177 30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE-----S----------GGFAGN--IGHDPHVLYTLSAVQV 90 (227)
Q Consensus 30 ~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~~-----d----------Ggf~~~--~~~~~~~~~T~~al~~ 90 (227)
.+.+|-|.+++.+|...+.. .....+|+.+||++.|.. | |||+.. ....++...|..+|.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 56789998888888777643 234688999999998862 2 777764 3456788899988875
Q ss_pred HHhcccC------CCC---CHHHHHHHHHhccCCCCCcccCCC------------------CCCCccchhHHHHH---HH
Q 027177 91 LALFDKV------DIL---DADKVSNYIVGLQNEDGSFSGDIW------------------GEVDTRFSYIAICC---LS 140 (227)
Q Consensus 91 L~~l~~~------~~~---~~~~~~~~l~~~Q~~dGg~~~~~~------------------~~~d~~~t~~a~~~---L~ 140 (227)
+.++... +.+ ...++++||++.|++||||+.... -..|..++.|+..+ |.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 4444321 112 257899999999999999985310 11245666665554 44
Q ss_pred Hhhcc-C-------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCc
Q 027177 141 ILQRL-D-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV 210 (227)
Q Consensus 141 ~~g~~-~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~ 210 (227)
+++.. + ...++++++||++.|++||||..+.+ ..+.+.|+++|.+|..+|.... +.++++++||+++|+
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 44431 1 24678999999999999999987766 4778899999999999987532 469999999999999
Q ss_pred cCCCcCCCC
Q 027177 211 KSGGLNGRP 219 (227)
Q Consensus 211 ~~GGf~~~~ 219 (227)
+||||+...
T Consensus 654 ~DGGWGEs~ 662 (763)
T PLN02993 654 DDGGWGESY 662 (763)
T ss_pred CCCCcCcCc
Confidence 999998753
No 42
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.72 E-value=8.6e-17 Score=142.43 Aligned_cols=158 Identities=29% Similarity=0.380 Sum_probs=128.0
Q ss_pred HHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCC------CC--CHHHHH
Q 027177 56 DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVS 106 (227)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~ 106 (227)
++++.|+..|..+|||..... .++.+.+|.+++++|....+.- ++ .+++++
T Consensus 516 dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av 595 (760)
T KOG0497|consen 516 DAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAV 595 (760)
T ss_pred HHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHH
Confidence 688889999999999986431 2467889999999999887531 12 257899
Q ss_pred HHHHhccCCCCCcccCCCCCCCccchhHH---HHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCC---------
Q 027177 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIA---ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG--------- 172 (227)
Q Consensus 107 ~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a---~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~--------- 172 (227)
+||++.|.+||+|.+ .|+ +++||.+ +.+|...|+. ....++++++||++.|++||||++++.
T Consensus 596 ~~ie~~Q~~DGSWyG-sWg---vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~ 671 (760)
T KOG0497|consen 596 EFIEKLQLPDGSWYG-SWG---VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIP 671 (760)
T ss_pred HHHHHcCCCCCcccc-hhh---HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccc
Confidence 999999999999998 455 3676654 4566777763 345789999999999999999999732
Q ss_pred ---CCCchhhchHHHHHHHHhcCCC--CCCHHHHHHHHHccCccCCCcCC
Q 027177 173 ---GESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 173 ---~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
..++...|++|+++|..+|+.+ +.++.|+++.|.+.|..+|-|.-
T Consensus 672 ~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq 721 (760)
T KOG0497|consen 672 LEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ 721 (760)
T ss_pred cccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence 3578889999999999999874 34799999999999999998854
No 43
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.66 E-value=1.3e-15 Score=124.56 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=132.4
Q ss_pred HHHHHcccCCCCcchh-hcccchHHHHHHHHHHHHHhCCCCC---cCHHHHHHHHHhccCCCCCccCCCC---------C
Q 027177 11 KYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNIG---------H 77 (227)
Q Consensus 11 ~yl~~~q~~dg~~~~~-~~~~~~~~~~y~~l~~l~ll~~~~~---~~~~~~i~~l~~~q~~dGgf~~~~~---------~ 77 (227)
.=+.+-+++||||..+ .+.++++|.|.|++..+........ ..++++++||.+.|++||.|..... .
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~ 83 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV 83 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence 4456678999999999 6678999999999999999987532 3578999999999999999975322 1
Q ss_pred CCChHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccH
Q 027177 78 DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV 150 (227)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~ 150 (227)
...+..|.+++.+|...+... ...++++++||++.. ....|......+..+|.+.++ .+..
T Consensus 84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~----------~~~~~~Y~lAl~aYAL~la~~--~~~~ 151 (246)
T PF07678_consen 84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHL----------DNIQDPYTLALVAYALALAGD--SPQA 151 (246)
T ss_dssp THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHH----------GCTSSHHHHHHHHHHHHHTTT--CHHH
T ss_pred CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhc----------cccCCHHHHHHHHHHHHhhcc--cchH
Confidence 235778888888888776321 122688999998761 011222222223345666663 4456
Q ss_pred HHHHHHHHhccCCCCCcCCCCCC--------------CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177 151 DKAVEYIVSCKNLDGGFGCTPGG--------------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (227)
Q Consensus 151 ~~~~~~l~~~Q~~dGGf~~~~~~--------------~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~ 216 (227)
+++.+-|.+....+|+..+.+.. ..+++.|.|||.++...+. .....++++||.++|+..|||+
T Consensus 152 ~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~--~~~~~~iv~WL~~qr~~~Ggf~ 229 (246)
T PF07678_consen 152 SKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGD--LEEASPIVRWLISQRNSGGGFG 229 (246)
T ss_dssp HHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHCTTTTSSTS
T ss_pred HHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhcCCCCccC
Confidence 77788888766555543222111 1357899999999888843 2347889999999999999997
Q ss_pred C
Q 027177 217 G 217 (227)
Q Consensus 217 ~ 217 (227)
-
T Consensus 230 S 230 (246)
T PF07678_consen 230 S 230 (246)
T ss_dssp S
T ss_pred c
Confidence 4
No 44
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.64 E-value=8.6e-15 Score=113.31 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=118.2
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHH
Q 027177 29 EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNY 108 (227)
Q Consensus 29 ~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~ 108 (227)
+++.+..|||+-.+|.+.+.. -.+.+-+|+++.|+.+|++.+.--..++...|+.|+-+|..... ++...+|
T Consensus 119 t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~F 190 (274)
T COG1689 119 TATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHF 190 (274)
T ss_pred CCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc-----hHHHHhH
Confidence 566788999999999999854 45566678888888887776665567788888877777665432 3444444
Q ss_pred HHhccCCCCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC-CCCCchhhchHHHHH
Q 027177 109 IVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGA 186 (227)
Q Consensus 109 l~~~Q~~dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~-~~~~~~~~T~~al~a 186 (227)
=.. .-.+|||...|.+ ++-+..||+|+.+|.+++.. ..+...++||.+.||+||||+.+- .+.|.+..||.||..
T Consensus 191 e~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~ 267 (274)
T COG1689 191 ELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALAS 267 (274)
T ss_pred Hhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHH
Confidence 444 4567999988877 45578899999999999874 457889999999999999998764 568999999999999
Q ss_pred HHHhc
Q 027177 187 LAIAG 191 (227)
Q Consensus 187 L~~~g 191 (227)
|..+-
T Consensus 268 L~~l~ 272 (274)
T COG1689 268 LASLH 272 (274)
T ss_pred HHHHh
Confidence 98763
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.60 E-value=8.3e-14 Score=115.82 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=133.6
Q ss_pred HHHHHHHHHHcccCCCCcchhhcc-cchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCCC-----
Q 027177 6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG----- 76 (227)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~----- 76 (227)
+++++++|.+.|++||||+.+++. .++.|.|.|++.+|..++... +..++++++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 457889999999999999999877 789999999999998776532 23488999999999999999976533
Q ss_pred ----CCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHH
Q 027177 77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152 (227)
Q Consensus 77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~ 152 (227)
..+....|.+++.+|...+......+.++++||.+.... ..++.....+..+|.+.|. ....++
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~~ 198 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRADE 198 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHHH
Confidence 234556788898888877654333468899999987532 1122223334466777775 223445
Q ss_pred HHHHHHhccCCCCC-------cCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 153 AVEYIVSCKNLDGG-------FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 153 ~~~~l~~~Q~~dGG-------f~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
+++-|...-...++ |....+.......|.+++.+....+ +.....+++.||.+++...|+|..
T Consensus 199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~--~~~~~~~~~~~L~~~~~~~~~~~s 268 (282)
T cd02891 199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG--DLEEAGPIAKWLAQQRNSGGGFLS 268 (282)
T ss_pred HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCCccc
Confidence 55555543322332 2212233344566667766665433 233478899999997777888854
No 46
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.60 E-value=4.3e-16 Score=111.54 Aligned_cols=104 Identities=24% Similarity=0.417 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhch
Q 027177 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181 (227)
Q Consensus 103 ~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~ 181 (227)
+++++||.+.|++||+|... +. .++..|++++.+|..++. ...+.++++++||+++|++||||++.+ ..+...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~-~~-~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYN-WG-SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccc-cc-ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHHH
Confidence 57899999999999999864 32 567778888888887775 345678999999999999999999874 34466777
Q ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHHccCc
Q 027177 182 CCVGALAIAGAL-HHVDKDLLGWWLCERQV 210 (227)
Q Consensus 182 ~al~aL~~~g~~-~~~~~~~~~~wL~~~Q~ 210 (227)
.++.+|.+.+.. +...++++++||+++|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 788888777653 33458999999999975
No 47
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.57 E-value=8.2e-14 Score=116.92 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=116.4
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCC------
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW------ 124 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~------ 124 (227)
+++.++.++++|++||||+.+.+..++...|.+++.+|........++ ++++++||.+.|++||+|.....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 567888889999999999988777888999999999998886543343 57899999999999999996421
Q ss_pred --C----CCCccchhHHHHHHHHhhccC-------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177 125 --G----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (227)
Q Consensus 125 --~----~~d~~~t~~a~~~L~~~g~~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g 191 (227)
+ ++++..|.+++.+|...+... ...++++++||.+++.+ ..+++.++.+.-+|.+++
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence 1 245666777887887766532 23678999999998763 234555666666676766
Q ss_pred CCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177 192 ALHHVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
. +...++.+||.++|+.+||+..+
T Consensus 204 ~---~~~~~a~~~L~~~~~~d~~~~~~ 227 (297)
T cd02896 204 S---PLSHAANRKLLSLAKRDGNGWYW 227 (297)
T ss_pred C---hhhHHHHHHHHHHhhhCCCccee
Confidence 3 25788999999999999998764
No 48
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.51 E-value=1.4e-12 Score=109.27 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=112.2
Q ss_pred HHHHHHHHhCCCCCcCHHHHHHHH-------HhccCCCCCccCCCCC--CCChHHHHHHHHHHHhcccCCCCC---HHHH
Q 027177 38 WGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDILD---ADKV 105 (227)
Q Consensus 38 ~~l~~l~ll~~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~~---~~~~ 105 (227)
+++.-|...+..++..++++++|| ++.|++||||+.+... .++...|.+++.+|........++ ++++
T Consensus 28 ~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra 107 (292)
T cd02897 28 YVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQA 107 (292)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 444444444433332344555555 5689999999876443 678999999999998876432232 6889
Q ss_pred HHHHHhccCCCCCcccCCC---------CCCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCC
Q 027177 106 SNYIVGLQNEDGSFSGDIW---------GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGES 175 (227)
Q Consensus 106 ~~~l~~~Q~~dGg~~~~~~---------~~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~ 175 (227)
++||.+.|++||+|..... ..+++..|.+++.+|...|.. ..+.++++++||.+.+.+ ..
T Consensus 108 ~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~ 177 (292)
T cd02897 108 LTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------IS 177 (292)
T ss_pred HHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CC
Confidence 9999999999999985311 112344577777778777763 245689999999997763 34
Q ss_pred chhhchHHHHHHHHhcCCCCCCHHHHHHHHHc---cCccCCCcCC
Q 027177 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCE---RQVKSGGLNG 217 (227)
Q Consensus 176 ~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~---~Q~~~GGf~~ 217 (227)
+++.++.+..+|..++. ....+++++|.. ++...|+|..
T Consensus 178 ~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~ 219 (292)
T cd02897 178 DPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSR 219 (292)
T ss_pred CHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCc
Confidence 57778888888888883 224455555544 4555667753
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.45 E-value=5.5e-14 Score=100.56 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccch
Q 027177 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS 132 (227)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t 132 (227)
++++++||++.|++||+|.... .++...|.+++.+|...+... ...++++++||.+.|++||||...+ ......|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t 76 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred Cccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHH
Confidence 4689999999999999997653 356788888888887776432 2237999999999999999999752 2223334
Q ss_pred hHHHHHHHHhhc-cCcccHHHHHHHHHhccC
Q 027177 133 YIAICCLSILQR-LDKINVDKAVEYIVSCKN 162 (227)
Q Consensus 133 ~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~ 162 (227)
..++.+|.+.+. ...+.++++++||++.|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 444555554443 245678999999999875
No 50
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.42 E-value=2.8e-13 Score=80.75 Aligned_cols=44 Identities=45% Similarity=1.005 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (227)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g 191 (227)
++++++++||++||++||||+..|+.++|+.+|+|++++|.++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999876
No 51
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.40 E-value=3.9e-12 Score=113.27 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHHHHhCCCCC--cCHHHHHHHHHhccCC---C------------CCccCCCCCCC--ChHHHHHHHHHH
Q 027177 31 LRLNGAYWGLTTLDILGKLDA--VDEEDVISWILKCQDE---S------------GGFAGNIGHDP--HVLYTLSAVQVL 91 (227)
Q Consensus 31 ~~~~~~y~~l~~l~ll~~~~~--~~~~~~i~~l~~~q~~---d------------Ggf~~~~~~~~--~~~~T~~al~~L 91 (227)
+-+|.|-++|.++-..+..++ ....++.+||.+.|-. . |||..+..... -..+|.-++...
T Consensus 415 sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~ 494 (760)
T KOG0497|consen 415 SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCC 494 (760)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHH
Confidence 567888788877766665433 2467999999998742 2 34433332222 234666677666
Q ss_pred HhcccC------CCCCHHH---HHHHHHhccCCCCCcccC-------------C---CCC-----CCccchhHHHHHHHH
Q 027177 92 ALFDKV------DILDADK---VSNYIVGLQNEDGSFSGD-------------I---WGE-----VDTRFSYIAICCLSI 141 (227)
Q Consensus 92 ~~l~~~------~~~~~~~---~~~~l~~~Q~~dGg~~~~-------------~---~~~-----~d~~~t~~a~~~L~~ 141 (227)
.+++.. +.+++++ +++.|..+|..+|||..- | ... +-+..|-.++.+|..
T Consensus 495 lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~ 574 (760)
T KOG0497|consen 495 LLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVY 574 (760)
T ss_pred HHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHh
Confidence 555431 3456655 678899999999998742 1 011 123334455666666
Q ss_pred hhccC--------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CCCCHHHHHHHHHccCcc
Q 027177 142 LQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVK 211 (227)
Q Consensus 142 ~g~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~wL~~~Q~~ 211 (227)
+.... ...++++++||.+.|.+||+|..+++ ..-.+.|++|+.+|..+|+. ....++++++||++.|++
T Consensus 575 F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg-vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~ 653 (760)
T KOG0497|consen 575 FHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG-VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNP 653 (760)
T ss_pred hcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh-HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcc
Confidence 65421 23578899999999999999998776 36678899999999999974 345689999999999999
Q ss_pred CCCcCCCCC
Q 027177 212 SGGLNGRPE 220 (227)
Q Consensus 212 ~GGf~~~~~ 220 (227)
+|||+..+-
T Consensus 654 ~GGWgEs~l 662 (760)
T KOG0497|consen 654 DGGWGESYL 662 (760)
T ss_pred cCCCccccc
Confidence 999987653
No 52
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.27 E-value=1.3e-11 Score=108.35 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=132.6
Q ss_pred CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCC-------------------C
Q 027177 19 KKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG-------------------H 77 (227)
Q Consensus 19 ~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~-------------------~ 77 (227)
..|+|.++... -.+.-. ++....++....+..+.+.+++|+...|+..|||...+. +
T Consensus 248 ~~g~W~f~~~~~~ypd~d~--T~~~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 248 SPGGWGFSNINTGYPDADD--TAGVVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred CCCccceeecccCCCCchh--hhHHHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence 46777655432 111111 233333333333334777899999999999999987642 2
Q ss_pred CCChHHHHHHHHHHHhcccCC----CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHH---HHHHHhhccC--cc
Q 027177 78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAI---CCLSILQRLD--KI 148 (227)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~---~~L~~~g~~~--~~ 148 (227)
.+.+.+|...+.+|+.++... ...++++++||++.|.++|.|.+ .|. ++++|.+. .++++.|... ..
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g-~w~---v~~iY~~s~a~~~l~~~g~~~~~~~ 401 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYG-RWG---VCYIYGTSGALSALALVGETDENEV 401 (517)
T ss_pred CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceee-EEE---EEEEEehhhhhhhhhccCccccchH
Confidence 334445554555555554422 34578999999999999999987 233 35666555 4455556532 23
Q ss_pred cHHHHHHHHHhccCCCCCcCCCCCC----------CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177 149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR 218 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~~----------~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~ 218 (227)
.+.+++.|+.++|++||||+..... .+-...|.+++.++..+..+....+++.+++|.+.|.++|-|+..
T Consensus 402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence 5789999999999999999986432 244557888988888887765555889999999999999988776
Q ss_pred C
Q 027177 219 P 219 (227)
Q Consensus 219 ~ 219 (227)
+
T Consensus 482 ~ 482 (517)
T COG1657 482 E 482 (517)
T ss_pred e
Confidence 5
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.27 E-value=1.6e-10 Score=96.16 Aligned_cols=145 Identities=19% Similarity=0.109 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCC-CCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCC----
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---- 124 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~---- 124 (227)
.+++++++|.++|++||||+.+++. .++...|.+++.+|..+++...++ ++++++||.+.|.+||+|.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 4678999999999999999999887 889999999999998776533333 68899999999999999986422
Q ss_pred -----CCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHH
Q 027177 125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD 199 (227)
Q Consensus 125 -----~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~ 199 (227)
..++...|.+++.+|...|......++++++||.+.... ..++...+....+|..+|. .....
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~ 197 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD 197 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence 123344567777777777764445688999999987643 1223334444455555654 22345
Q ss_pred HHHHHHHccC
Q 027177 200 LLGWWLCERQ 209 (227)
Q Consensus 200 ~~~~wL~~~Q 209 (227)
++++-|.+.-
T Consensus 198 ~~l~~l~~~~ 207 (282)
T cd02891 198 EALKKLLEAA 207 (282)
T ss_pred HHHHHHHHHh
Confidence 5566665553
No 54
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.24 E-value=8.2e-12 Score=74.40 Aligned_cols=44 Identities=39% Similarity=0.704 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177 100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (227)
Q Consensus 100 ~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g 143 (227)
+|++++++||.++|++||||+.++++++|+.+|||++++|.++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999876
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.91 E-value=2.2e-09 Score=94.49 Aligned_cols=167 Identities=21% Similarity=0.237 Sum_probs=116.5
Q ss_pred HHHHHHHhccCCCCCccCCCC--CCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCC---------
Q 027177 56 DVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW--------- 124 (227)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~--------- 124 (227)
+...|-...+..-|+|+.... ..++...|..++.++...... .+.+++++|+...|+..|||.....
T Consensus 237 ~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~~--~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~ 314 (517)
T COG1657 237 KYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQSL--PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRL 314 (517)
T ss_pred HhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhcch--hhHHhhhhHhhhcccccCceeeeccccccHHHhh
Confidence 333443333445677766543 567888888888887776532 2356799999999999999985421
Q ss_pred ------C-CCC---ccchhHHHHHHHHhhc-cC---cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177 125 ------G-EVD---TRFSYIAICCLSILQR-LD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (227)
Q Consensus 125 ------~-~~d---~~~t~~a~~~L~~~g~-~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~ 190 (227)
+ ..+ ...|...+.+|..++. .. ...++++++||++.|.++|.|-...+ ....+.|..++.+|...
T Consensus 315 L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~-v~~iY~~s~a~~~l~~~ 393 (517)
T COG1657 315 LPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG-VCYIYGTSGALSALALV 393 (517)
T ss_pred CCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE-EEEEEehhhhhhhhhcc
Confidence 0 011 1223333444444433 11 35689999999999999999987765 35677888899999998
Q ss_pred cCCCC--CCHHHHHHHHHccCccCCCcCCCCCCCCCC
Q 027177 191 GALHH--VDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225 (227)
Q Consensus 191 g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~ 225 (227)
|..+. ..+++++.||..+|+++|||+.....++|-
T Consensus 394 g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~ 430 (517)
T COG1657 394 GETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP 430 (517)
T ss_pred CccccchHHHHHHHHHhhhccccCCCccccccccccc
Confidence 87653 347899999999999999999887766653
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.86 E-value=1.5e-08 Score=82.96 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=100.5
Q ss_pred HHHHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCCC-------
Q 027177 57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG------- 125 (227)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~~------- 125 (227)
..+-+++.+++||+|+.+ ...+++...|.+++..|....+.-.+| +.++++||.+.|++||+|.....-
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g 81 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG 81 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence 345678899999999999 667889999999999999888764454 588999999999999999864210
Q ss_pred --CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCC
Q 027177 126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (227)
Q Consensus 126 --~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~ 196 (227)
..++..|..++.+|...+.. ....++++++||.+... ...+++..+.+--+|.+++ +.+
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~ 149 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP 149 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence 12344555666666655521 23468899999987611 1123333333333444555 345
Q ss_pred CHHHHHHHHHccCccCCCcCCCC
Q 027177 197 DKDLLGWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 197 ~~~~~~~wL~~~Q~~~GGf~~~~ 219 (227)
..+.+.+-|.+....+|+...++
T Consensus 150 ~~~~~~~~L~~~a~~~~~~~~W~ 172 (246)
T PF07678_consen 150 QASKLLNKLNSMATTEGGLRYWS 172 (246)
T ss_dssp HHHHHHHHHHCHCEETTTTCEE-
T ss_pred hHHHHHHHHHHhhhhccccCccc
Confidence 57778888888877777765444
No 57
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.5e-06 Score=85.47 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=116.2
Q ss_pred cHHHHHHHHHHc-------ccCCCCcchhhc--ccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCcc
Q 027177 5 AADKHVKYIISV-------EKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFA 72 (227)
Q Consensus 5 ~~~~~~~yl~~~-------q~~dg~~~~~~~--~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~ 72 (227)
-+.++++||... +++||+|..+.. .....|.|-|++.++...... ++.-+.++++||...|.++|.|-
T Consensus 965 ~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 965 LKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEe
Confidence 356788888874 779999988876 577889999999999998775 34457799999999999999986
Q ss_pred CCCC--------CCCCh-HHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177 73 GNIG--------HDPHV-LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (227)
Q Consensus 73 ~~~~--------~~~~~-~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g 143 (227)
..-. ..... ..|...+..+... +.....+++.|+.+.-.. + ..+....-.++.||.+.+
T Consensus 1045 e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~-~--------~~~~~~~a~~ayAl~l~~ 1112 (1436)
T KOG1366|consen 1045 EVGEVLHNEMQGGLQDIVALTAIVLSVILDV---DNASIQKAVAYLEESLDS-G--------SMDVYTVAITAYALQLAK 1112 (1436)
T ss_pred ccccccchhhhcCCCCcceeeeEeeeeeccc---hhhHHHHHHHHHhhccCc-c--------ccccchHHHHHHHHHhcc
Confidence 4321 11111 1111111111110 123356778888876311 1 111111222234454444
Q ss_pred ccCcccHHHHHHHHHhcc--CCC--CCcC----------CCC-CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 144 RLDKINVDKAVEYIVSCK--NLD--GGFG----------CTP-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 144 ~~~~~~~~~~~~~l~~~Q--~~d--GGf~----------~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.+. ..+++.-+.+.- ..| ..|. ..+ ....+.++|.||+.++..+...+ .+...++||.+.
T Consensus 1113 sp~---a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl~~q 1187 (1436)
T KOG1366|consen 1113 SPQ---AAKALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD--YALPIVRWLVEQ 1187 (1436)
T ss_pred Cch---HHHHHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC--cCchhHhhhhhh
Confidence 422 112222122211 111 1111 111 12357889999999998887654 466789999999
Q ss_pred CccCCCcCC
Q 027177 209 QVKSGGLNG 217 (227)
Q Consensus 209 Q~~~GGf~~ 217 (227)
|+..|||+-
T Consensus 1188 r~~~GGf~S 1196 (1436)
T KOG1366|consen 1188 RNALGGFSS 1196 (1436)
T ss_pred hcccCceee
Confidence 999999964
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.38 E-value=7.7e-06 Score=67.63 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccCCCCCcccCC-CCC-CCccchhH---HHHHHHHhhcc-----------------CcccHHHHHHHHHh
Q 027177 102 ADKVSNYIVGLQNEDGSFSGDI-WGE-VDTRFSYI---AICCLSILQRL-----------------DKINVDKAVEYIVS 159 (227)
Q Consensus 102 ~~~~~~~l~~~Q~~dGg~~~~~-~~~-~d~~~t~~---a~~~L~~~g~~-----------------~~~~~~~~~~~l~~ 159 (227)
..++++||++.|.++|||...- ... ....-||. .+.++.+|... ....++|+++||++
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999998642 111 01111221 22333333211 12357899999999
Q ss_pred ccCCCCCcCCCC
Q 027177 160 CKNLDGGFGCTP 171 (227)
Q Consensus 160 ~Q~~dGGf~~~~ 171 (227)
+|-++|||...+
T Consensus 149 tQ~~~gg~~t~W 160 (290)
T TIGR02474 149 TQVVQNGKLTVW 160 (290)
T ss_pred hhcccCCcCCch
Confidence 999888776553
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.88 E-value=7.4e-05 Score=61.88 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCC--C---CcCHHHHHHHHHhccCCCCCccCCCC----CCCChH----HHHHHHHHHHhcccC----
Q 027177 35 GAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGFAGNIG----HDPHVL----YTLSAVQVLALFDKV---- 97 (227)
Q Consensus 35 ~~y~~l~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~----~T~~al~~L~~l~~~---- 97 (227)
.|+..+.-|+.+-.. + ....+++++||++.|.++|||..+.. +..|+. .+..+|..|..+...
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 344555555544321 1 13577999999999999999986532 222221 233455666444221
Q ss_pred CC----------CCHHHHHHHHHhccCCCCCcccCCCC----------------C-CCccchhHHHHHHHHhhc--cC--
Q 027177 98 DI----------LDADKVSNYIVGLQNEDGSFSGDIWG----------------E-VDTRFSYIAICCLSILQR--LD-- 146 (227)
Q Consensus 98 ~~----------~~~~~~~~~l~~~Q~~dGg~~~~~~~----------------~-~d~~~t~~a~~~L~~~g~--~~-- 146 (227)
.. ..++|+++||++.|.++|||-+. |+ | +.++..-.+.....|+.. ++
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~-Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~ 203 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV-WCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAE 203 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc-hhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHH
Confidence 00 12588999999999998876541 11 1 122222222222233332 22
Q ss_pred -cccHHHHHHHHHhccCCC
Q 027177 147 -KINVDKAVEYIVSCKNLD 164 (227)
Q Consensus 147 -~~~~~~~~~~l~~~Q~~d 164 (227)
...|+.+++|+.+..-++
T Consensus 204 i~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 204 IKEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 125788999999987654
No 60
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=96.77 E-value=0.0019 Score=53.63 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcccCCC-----CCHHHHHHHHHhccCCCCCcccC-CCCC-CCccchh---HHHHHHHHhhc-----cC-
Q 027177 83 YTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGD-IWGE-VDTRFSY---IAICCLSILQR-----LD- 146 (227)
Q Consensus 83 ~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~Q~~dGg~~~~-~~~~-~d~~~t~---~a~~~L~~~g~-----~~- 146 (227)
.|...|.-|+.+-.... ....|+++||++.|.++|||... |... -....|| ..+..|.+|.. .+
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 45555555554422111 12588999999999999999864 2211 1112233 12334444321 11
Q ss_pred -----------cccHHHHHHHHHhccC----CCCCcCCCCCC-----------C-CchhhchHHHHHHHHhcCCCCC---
Q 027177 147 -----------KINVDKAVEYIVSCKN----LDGGFGCTPGG-----------E-SHSGQIFCCVGALAIAGALHHV--- 196 (227)
Q Consensus 147 -----------~~~~~~~~~~l~~~Q~----~dGGf~~~~~~-----------~-~~~~~T~~al~aL~~~g~~~~~--- 196 (227)
...++|++++|+++|- +-.+|+..-.. | +..+ +.-.+..+..|..+..+
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls-~~ES~~iv~~LM~~~~ps~~ 198 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLS-GSESVGIVRFLMSLPNPSPE 198 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEE-CCCHHHHHHHHCTSSS--HH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccc-cccHHHHHHHHhcCCCCCHH
Confidence 2357899999999997 23577754110 1 1111 11123333333333222
Q ss_pred ---CHHHHHHHHHccCccCCCcCC
Q 027177 197 ---DKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 197 ---~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
.++.++.||.+.+.++.-|..
T Consensus 199 v~~aI~~AvaWl~~~ki~g~~~~~ 222 (289)
T PF09492_consen 199 VLAAIEAAVAWLESVKIPGKRWEK 222 (289)
T ss_dssp HHHHHHHHHHHHCCTSEEEEEE-G
T ss_pred HHHHHHHHHHHHHhCcCCCceeEe
Confidence 378899999988766554433
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=96.60 E-value=0.0052 Score=51.09 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=26.8
Q ss_pred CccchhHHHHHHHHhhc-----cCcccHHHHHHHHHhccCCCCCcCCC
Q 027177 128 DTRFSYIAICCLSILQR-----LDKINVDKAVEYIVSCKNLDGGFGCT 170 (227)
Q Consensus 128 d~~~t~~a~~~L~~~g~-----~~~~~~~~~~~~l~~~Q~~dGGf~~~ 170 (227)
|-..|+..+.-|..+-. .......|+++||++.|.|+|||...
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSE
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCcc
Confidence 44556666655543321 12346789999999999999999865
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=95.37 E-value=0.043 Score=46.48 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=42.5
Q ss_pred cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC---CCHHHHHHHHHccCccCCCcCC
Q 027177 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
.++++++.|++.|.+||.||. .+.|.-|+.+|...+.... ++-.++.++|++. .++|.|+.
T Consensus 216 ~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred HHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCC
Confidence 356778889999999999983 4568999999998886422 3357788888875 35888864
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=94.53 E-value=0.2 Score=47.65 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCC--CCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhc
Q 027177 53 DEEDVISWILKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGL 112 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (227)
..-.+++||+..|.+||+|+..... ..-+.+|.+++.+|.-=+.. ...+++++.||.+.
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fi~~n 176 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSFFREN 176 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHHHHHH
Confidence 5568999999999999999874321 12368899888888542221 11256777887753
No 64
>PLN02592 ent-copalyl diphosphate synthase
Probab=94.48 E-value=0.045 Score=51.81 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHhccCCCCCcCCCCCC--CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177 147 KINVDKAVEYIVSCKNLDGGFGCTPGG--ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (227)
Q Consensus 147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~--~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~ 208 (227)
.+....+++||++.|.+|||||..+.. .--...|..+|.||..=+. .+..+++++.||.++
T Consensus 114 ~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fi~~n 176 (800)
T PLN02592 114 TPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNL-HPEKCEKGMSFFREN 176 (800)
T ss_pred CCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 345678999999999999999974321 1123567777777765332 223367788887654
No 65
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=94.22 E-value=1.9 Score=40.21 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred cchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC-HHHHHHH
Q 027177 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD-ADKVSNY 108 (227)
Q Consensus 30 ~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~-~~~~~~~ 108 (227)
.+++..+||++..+..|+...+ +.+.+++++.+.-.+. .+++...|+++.+...++ +..+ ..++.+-
T Consensus 46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~--C~~~~~~~~~~~ 113 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALK--CKVSVSNEVKSL 113 (636)
T ss_pred cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcC--CcccCcHHHHHH
Confidence 3468889999999999998754 5889999998854321 135888899999888886 4444 3445555
Q ss_pred HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHH
Q 027177 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (227)
Q Consensus 109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL 187 (227)
+...-++ .+++...|+++.+|..+|. ....+.++.+.-|...+..|. .+..+.+|+.++
T Consensus 114 l~~~l~~----------~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~a 173 (636)
T PF05817_consen 114 LKAALSE----------DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAA 173 (636)
T ss_pred HHHHhcC----------CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHH
Confidence 5554322 2355669999999999986 223366777777777666533 233455666666
Q ss_pred HHhc
Q 027177 188 AIAG 191 (227)
Q Consensus 188 ~~~g 191 (227)
..++
T Consensus 174 a~L~ 177 (636)
T PF05817_consen 174 AQLS 177 (636)
T ss_pred Hhhc
Confidence 6655
No 66
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.15 Score=51.36 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHh-------ccCCCCCccCCCC--CCCChHHHHHHHHHHHhcccCCCCC---HH
Q 027177 36 AYWGLTTLDILGKLDAVDEEDVISWILK-------CQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD 103 (227)
Q Consensus 36 ~y~~l~~l~ll~~~~~~~~~~~i~~l~~-------~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~ 103 (227)
.++++.=|...+...+...++++.+|.. .+++||.|+.+-. .....+.|.+++..+......-.+| ..
T Consensus 948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence 4466666666666554456677777744 4468999988765 5567889999999998886654344 57
Q ss_pred HHHHHHHhccCCCCCcccC
Q 027177 104 KVSNYIVGLQNEDGSFSGD 122 (227)
Q Consensus 104 ~~~~~l~~~Q~~dGg~~~~ 122 (227)
++++||...|+++|.|...
T Consensus 1028 ~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHhhccCceEecc
Confidence 8999999999999999864
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=94.12 E-value=0.093 Score=49.81 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCC----CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHc
Q 027177 132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGE----SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCE 207 (227)
Q Consensus 132 t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~----~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~ 207 (227)
|.|+...=.. +....+....+++||++.|.+||+||..+... --...|..+|.||..=+.. +..+++.+.|+.+
T Consensus 58 TAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~~ 135 (784)
T PLN02279 58 TAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-EEQINKGLQFIEL 135 (784)
T ss_pred hHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-cccchhhHHHHHH
Confidence 5554433222 33334556789999999999999999642211 1235687778887765432 2234566666654
No 68
>PLN02279 ent-kaur-16-ene synthase
Probab=93.36 E-value=0.46 Score=45.21 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=39.7
Q ss_pred cCHHHHHHHHHhccCCCCCccCCCCCC----CChHHHHHHHHHHHhcccCCCCCHHHHHHHHHh
Q 027177 52 VDEEDVISWILKCQDESGGFAGNIGHD----PHVLYTLSAVQVLALFDKVDILDADKVSNYIVG 111 (227)
Q Consensus 52 ~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~ 111 (227)
..-..+++||++-|.+||+|+...... .-+.+|.+++.+|.-=+.. ...+++.+.||.+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~~ 135 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-EEQINKGLQFIEL 135 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-cccchhhHHHHHH
Confidence 356789999999999999998642211 2467899988888643322 1124555666653
No 69
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=91.59 E-value=1.2 Score=37.94 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCC----------CHHHHHH
Q 027177 38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL----------DADKVSN 107 (227)
Q Consensus 38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~----------~~~~~~~ 107 (227)
+++.+|++.-.... .....+.-|....+.+..|+. .-++..++.|+.+|..+...... -++++++
T Consensus 148 ~sL~vLALCv~~~~-~~~~~v~kL~~~~~~~~~~~~----~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~ 222 (326)
T PF01122_consen 148 YSLGVLALCVHNKR-VSLSVVAKLLKAENHNFYHGS----QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVE 222 (326)
T ss_dssp HHHHHHHHHHTTHH-HHHHHHHHHHHHHHSSTSS-S----TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCC-cCHHHHHHHHHHHHhhcccCC----CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHH
Confidence 56666666543222 233444555555555522221 22455555577777666432111 1467888
Q ss_pred HHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc---ccHHHHHHHHHhccCCCCCcC
Q 027177 108 YIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFG 168 (227)
Q Consensus 108 ~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~---~~~~~~~~~l~~~Q~~dGGf~ 168 (227)
.|.+.|++||-|+. +..|--|+.+|...+.... .+-.++.+.|+... ++|.|.
T Consensus 223 kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 223 KILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 89999999999874 2456666777766665322 23467888888854 489997
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=75.61 E-value=4.8 Score=34.24 Aligned_cols=162 Identities=18% Similarity=0.085 Sum_probs=81.4
Q ss_pred CHHHHHHHHHhccC--CCCCccCCCCCCC--ChHHHHHHHHHHHhcccCC----CCC--HHHHHHHHHhccCC-CCCccc
Q 027177 53 DEEDVISWILKCQD--ESGGFAGNIGHDP--HVLYTLSAVQVLALFDKVD----ILD--ADKVSNYIVGLQNE-DGSFSG 121 (227)
Q Consensus 53 ~~~~~i~~l~~~q~--~dGgf~~~~~~~~--~~~~T~~al~~L~~l~~~~----~~~--~~~~~~~l~~~Q~~-dGg~~~ 121 (227)
...+..+|++..+. ++|+|........ .+...+.++..|..+.... -.+ .+-+..+.+.+..+ +|-|.-
T Consensus 91 ~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h 170 (336)
T PF07470_consen 91 AAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYH 170 (336)
T ss_dssp HHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBES
T ss_pred HHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceee
Confidence 35577787765443 5888865322222 2334444555555443221 111 12234445556655 455532
Q ss_pred CC--CCCCCc------cchhHHHHHH----HHhhccC------cccHHHHHHHHHhccCCCCCcCCC---CC--CCCchh
Q 027177 122 DI--WGEVDT------RFSYIAICCL----SILQRLD------KINVDKAVEYIVSCKNLDGGFGCT---PG--GESHSG 178 (227)
Q Consensus 122 ~~--~~~~d~------~~t~~a~~~L----~~~g~~~------~~~~~~~~~~l~~~Q~~dGGf~~~---~~--~~~~~~ 178 (227)
.. .+..+. |---|++.++ ..+...+ ....++.++.|.+.|.+||.|... |. ...+.+
T Consensus 171 ~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etS 250 (336)
T PF07470_consen 171 GYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETS 250 (336)
T ss_dssp EEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHH
T ss_pred ccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHH
Confidence 11 111111 1122333332 2222200 112456677788899999999765 33 345666
Q ss_pred hchHHHHHHHH---hcCCCC----CCHHHHHHHHHcc-CccCCC
Q 027177 179 QIFCCVGALAI---AGALHH----VDKDLLGWWLCER-QVKSGG 214 (227)
Q Consensus 179 ~T~~al~aL~~---~g~~~~----~~~~~~~~wL~~~-Q~~~GG 214 (227)
.|+....+|.. .|.++. +.++++.+.|.++ -+++|-
T Consensus 251 atA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 251 ATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 67666666643 344422 2368889999999 666666
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=74.49 E-value=75 Score=29.66 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=43.7
Q ss_pred hhcc--CcccHHHHHHHHHh-ccCC-CCCcCCCCC-----CCCchhhchHHHHHHHHhcCCCCC-----------CHHHH
Q 027177 142 LQRL--DKINVDKAVEYIVS-CKNL-DGGFGCTPG-----GESHSGQIFCCVGALAIAGALHHV-----------DKDLL 201 (227)
Q Consensus 142 ~g~~--~~~~~~~~~~~l~~-~Q~~-dGGf~~~~~-----~~~~~~~T~~al~aL~~~g~~~~~-----------~~~~~ 201 (227)
+|.. +++.+...++-|.+ ...| +|||.--++ +.+-.--|++...+++.+|+.+.. ..++.
T Consensus 489 ~g~l~~~Dpr~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~l 568 (616)
T TIGR01577 489 FNLIAPDDERMVKMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKL 568 (616)
T ss_pred cCCCCCCChHHHHHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHH
Confidence 5543 23333444555543 2232 456643222 123335577777777777865421 35667
Q ss_pred HHHHHccCccCCCcCCCC
Q 027177 202 GWWLCERQVKSGGLNGRP 219 (227)
Q Consensus 202 ~~wL~~~Q~~~GGf~~~~ 219 (227)
++|++++.++.|=|.-..
T Consensus 569 l~~~~~~~~~~Gll~Eqv 586 (616)
T TIGR01577 569 LKWVMDHRTDLGLLPEQV 586 (616)
T ss_pred HHHHHhcCCCCCCCcccc
Confidence 999999988877665443
No 72
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=71.02 E-value=90 Score=29.40 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhccc
Q 027177 30 HLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK 96 (227)
Q Consensus 30 ~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~ 96 (227)
++.+...||++.++..++... ..+.++.+.-|...+..| ..+.++-+|+.++..+..
T Consensus 121 ~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~ 178 (636)
T PF05817_consen 121 DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSK 178 (636)
T ss_pred CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhcc
Confidence 445566999999999998653 347778888887766654 346667778888877754
No 73
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.54 E-value=1.1e+02 Score=26.51 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCCCCCCC
Q 027177 50 DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEVD 128 (227)
Q Consensus 50 ~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d 128 (227)
++..+++.++||.+.....- ...++..-...+-..|..++. .+...++..++.+++....||=|+-.+...-|
T Consensus 130 ~~~~k~~l~~wL~~~~~~~~------~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~D 203 (361)
T PF10022_consen 130 DEEEKENLVDWLKQIRGIKP------PDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFD 203 (361)
T ss_pred CHHHHHHHHHHHHhcCcCCC------ccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCc
Confidence 34578899999987643221 112233333333344444433 22223466777788777677644433433444
Q ss_pred ccchhHHH-----HHHHHhhccCc----ccHHHHHHHHHh---ccCCCCCcCCCCCCCCchh--hchHHHHHHHHhcC
Q 027177 129 TRFSYIAI-----CCLSILQRLDK----INVDKAVEYIVS---CKNLDGGFGCTPGGESHSG--QIFCCVGALAIAGA 192 (227)
Q Consensus 129 ~~~t~~a~-----~~L~~~g~~~~----~~~~~~~~~l~~---~Q~~dGGf~~~~~~~~~~~--~T~~al~aL~~~g~ 192 (227)
-.. -+|+ ..+.+.+..+. .-.+++.+|... .-.+||.+- |-++|-.+ .++..+++++.++.
T Consensus 204 YYn-s~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~--~~GRSltYRfA~~a~~~~~a~~~~ 278 (361)
T PF10022_consen 204 YYN-SWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP--PFGRSLTYRFAAFAFLAAAALAGV 278 (361)
T ss_pred chH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC--CccccHHHHHHHHHHHHHHHHcCC
Confidence 332 2233 12233343221 123456666544 235789775 44455443 33345666667776
No 74
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=55.36 E-value=1.2e+02 Score=28.74 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccC--CCCCC-----CccchhHHHHHHHHh---hc-cCccc
Q 027177 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD--IWGEV-----DTRFSYIAICCLSIL---QR-LDKIN 149 (227)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~--~~~~~-----d~~~t~~a~~~L~~~---g~-~~~~~ 149 (227)
+...++.+.+|..++..++ .++..+||.+.|.++|.|-.. ..+.. .+-.+-..+.++..+ +. .....
T Consensus 297 ~RD~a~~a~AL~~~G~~~~--a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~ 374 (648)
T TIGR01535 297 PRDLYQVANAFLAAGDVDS--ALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKM 374 (648)
T ss_pred hhhHHHHHHHHHHCCCHHH--HHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHH
Confidence 5566666667776665432 678999999999999987422 11211 111111122222222 21 11245
Q ss_pred HHHHHHHHHhc
Q 027177 150 VDKAVEYIVSC 160 (227)
Q Consensus 150 ~~~~~~~l~~~ 160 (227)
++++.+||.+.
T Consensus 375 vk~aadfl~~~ 385 (648)
T TIGR01535 375 LKPAADFIVKN 385 (648)
T ss_pred HHHHHHHHHHc
Confidence 88999999885
No 75
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=55.05 E-value=50 Score=31.12 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCC--CCCcccCC---CCC-------CCc-----cchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCC
Q 027177 103 DKVSNYIVGLQNE--DGSFSGDI---WGE-------VDT-----RFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG 165 (227)
Q Consensus 103 ~~~~~~l~~~Q~~--dGg~~~~~---~~~-------~d~-----~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dG 165 (227)
.+.+--|+.++.. .|++..++ +++ .|- |-.+.++.+|..+|. ....++..+||.+.|.++|
T Consensus 254 ~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~--~~~a~~~~~~l~~~~~~~G 331 (648)
T TIGR01535 254 YVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGD--VDSALRSLDYLAKVQQDNG 331 (648)
T ss_pred HHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCC--HHHHHHHHHHHHHHhccCC
Confidence 4445556666664 38876543 211 122 334456777888886 3356889999999999999
Q ss_pred CcCCC--CCC-----CCchhhchHHHHHHHHhcCCCC----CCHHHHHHHHHcc
Q 027177 166 GFGCT--PGG-----ESHSGQIFCCVGALAIAGALHH----VDKDLLGWWLCER 208 (227)
Q Consensus 166 Gf~~~--~~~-----~~~~~~T~~al~aL~~~g~~~~----~~~~~~~~wL~~~ 208 (227)
.|-.. +.+ +.....|...|.++..+.+.+. .-++++++||.+.
T Consensus 332 ~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 332 MFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred CcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 87433 111 2334455565665555443321 1378899999986
No 76
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=51.81 E-value=39 Score=28.65 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCCCCcccCC---C--CCCCccchhHHHHHHHH---hhccC----cccHHHHHHHHHhc-cCCCCC
Q 027177 103 DKVSNYIVGLQNEDGSFSGDI---W--GEVDTRFSYIAICCLSI---LQRLD----KINVDKAVEYIVSC-KNLDGG 166 (227)
Q Consensus 103 ~~~~~~l~~~Q~~dGg~~~~~---~--~~~d~~~t~~a~~~L~~---~g~~~----~~~~~~~~~~l~~~-Q~~dGG 166 (227)
++.++.|.+.|.+||.|.... . ...|++.|..++.+|.. .|.++ .+..+++.+.|.+. -++||-
T Consensus 218 ~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 218 KKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 566788999999999997542 2 22344444444444421 23331 23567888999988 777876
No 77
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=48.33 E-value=51 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=26.6
Q ss_pred hhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcC
Q 027177 132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFG 168 (227)
Q Consensus 132 t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~ 168 (227)
++.++.+|..+|. ....++.++|+.+.|.+||+|-
T Consensus 300 ~~~~a~Al~~~G~--~~~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 300 ASYIATALDRAGY--HDRVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHhhCcCCCcc
Confidence 4455667777776 3456788999999999999874
No 78
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=47.17 E-value=87 Score=26.82 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=57.8
Q ss_pred HHHHHHHHhcc--CCCCCcccC--CCC-C----CCccchhHHHHHHHHh----hccC-cccHHHHHHHHHh-ccCCC-CC
Q 027177 103 DKVSNYIVGLQ--NEDGSFSGD--IWG-E----VDTRFSYIAICCLSIL----QRLD-KINVDKAVEYIVS-CKNLD-GG 166 (227)
Q Consensus 103 ~~~~~~l~~~Q--~~dGg~~~~--~~~-~----~d~~~t~~a~~~L~~~----g~~~-~~~~~~~~~~l~~-~Q~~d-GG 166 (227)
+.++.|..... .+.|||... ..+ . -++...-..+.+++.. +... ....+++++||.+ +..++ ||
T Consensus 17 ~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg 96 (384)
T cd00249 17 EDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGG 96 (384)
T ss_pred HHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCC
Confidence 56777776643 346888753 111 1 1122222233333322 2221 1234678899987 55556 98
Q ss_pred cCCCC---CC----CCchhhchHHHHHHHHhcCC-CCC----CHHHHHHHHHccCc-cCCCc
Q 027177 167 FGCTP---GG----ESHSGQIFCCVGALAIAGAL-HHV----DKDLLGWWLCERQV-KSGGL 215 (227)
Q Consensus 167 f~~~~---~~----~~~~~~T~~al~aL~~~g~~-~~~----~~~~~~~wL~~~Q~-~~GGf 215 (227)
|...- +. ..+.+.-++.+.+|+.+... ..+ ..+.+++++.++.. .+||+
T Consensus 97 ~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 97 WYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred EEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 86642 11 12344445556665554332 111 25677888888764 45665
No 79
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=40.36 E-value=40 Score=35.31 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhccCCCCCcCCCCC-CCCchhhchHHHHHHHHhcC
Q 027177 149 NVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGA 192 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~-~~~~~~~T~~al~aL~~~g~ 192 (227)
.++.++.-|++.|..+|+|+..++ ..+++.-|.|++-.|..+..
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e 1244 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRARE 1244 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhh
Confidence 466788889999999999998876 67889999999999988743
No 80
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=37.16 E-value=43 Score=25.35 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhccCCCCC----cCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177 148 INVDKAVEYIVSCKNLDGG----FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (227)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGG----f~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~ 217 (227)
.+++.+++|+..-+..||. +...| ++ ..+.+.+++..+.||+..-...+||++
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp---~~--------------~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPV---PE--------------DWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCC---cc--------------cCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 3578899999988877762 21111 10 334455688999999998667778876
No 81
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=36.29 E-value=80 Score=33.21 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhccCCCCCccCCCC-CCCChHHHHHHHHHHHhcc
Q 027177 53 DEEDVISWILKCQDESGGFAGNIG-HDPHVLYTLSAVQVLALFD 95 (227)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~-~~~~~~~T~~al~~L~~l~ 95 (227)
.++.++.-|.+.|..+|+|+.+.+ ..++...|.+++..|....
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhh
Confidence 466888999999999999998877 6788999999988887764
No 82
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=29.66 E-value=77 Score=28.92 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.1
Q ss_pred cHHHHHHHHHhccCCCCCcCCCC
Q 027177 149 NVDKAVEYIVSCKNLDGGFGCTP 171 (227)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~ 171 (227)
.+++.|+.|.+||.+||-++..+
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~ 106 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYP 106 (520)
T ss_pred HHHHHHHHHHHhccCCceecccc
Confidence 46778999999999999666543
No 83
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=28.69 E-value=1.1e+02 Score=23.15 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCC
Q 027177 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC 169 (227)
Q Consensus 102 ~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~ 169 (227)
++.+++|++.-+.-+|.-.......+ .+ ..+++.+++....||+..-...+||+.
T Consensus 98 I~~Lv~~iknP~s~kG~~~~~~~~mp----~~---------~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 98 IQSLVAYQRDPMSYDGSEESYGCRPV----PE---------DWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHhhCCcccCcccccccccCC----cc---------cCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 46678888888877663211000010 00 235677889999999986556789984
No 84
>PRK13617 psbV cytochrome c-550; Provisional
Probab=27.86 E-value=52 Score=25.30 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCC-CcCC
Q 027177 101 DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG-GFGC 169 (227)
Q Consensus 101 ~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dG-Gf~~ 169 (227)
+++..++||+.-|.-||.........+ ++ . ....-.++.+++.+++....||+....-+| .||.
T Consensus 101 nv~aLv~yikdP~sydg~~s~~e~~P~-~~-~---~~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 101 NVDALVDYLKDPTSYDGEYSIADLHPS-MR-S---ADLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred CHHHHHHHHhChHhhcchhhccccCcc-cc-c---cccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 489999999999988987654211100 00 0 000111233466778899999999866566 7873
No 85
>PRK13621 psbV cytochrome c-550; Provisional
Probab=27.26 E-value=1.3e+02 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccCCCCC---cccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCC
Q 027177 102 ADKVSNYIVGLQNEDGS---FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC 169 (227)
Q Consensus 102 ~~~~~~~l~~~Q~~dGg---~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~ 169 (227)
++.+++|++.-+..+|. |..++ + . .+.+++.+++....||+..-...+||+.
T Consensus 109 I~~LV~~iknPms~kg~~~~~~~~m---p--s-----------~~~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 109 IAALVAYQRDPMSYDGSEESYGCRQ---V--P-----------EDWMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred HHHHHHHhhCCCCCCcccccccccC---C--c-----------cCCCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 46678888888777663 22211 1 0 0335677899999999886555789984
No 86
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.23 E-value=4.2e+02 Score=23.07 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHH--HHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGL--TTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (227)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l--~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (227)
-.+++.++||++.....-... + |..|=++ ..|..++.. ++..++..++.+.+..-.||=|+-.+...-|
T Consensus 132 ~~k~~l~~wL~~~~~~~~~~n-------N-W~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~D 203 (361)
T PF10022_consen 132 EEKENLVDWLKQIRGIKPPDN-------N-WLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFD 203 (361)
T ss_pred HHHHHHHHHHHhcCcCCCccc-------h-hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCc
Confidence 356788888887654433222 2 3333333 344445443 2345678888888887777655555433333
Q ss_pred hHHH----HHHHHHHHhcccCCC--C--CHHHHHHHHHhc---cCCCCCcccCCCCCCCccchhHHH---HHHHHhhccC
Q 027177 81 VLYT----LSAVQVLALFDKVDI--L--DADKVSNYIVGL---QNEDGSFSGDIWGEVDTRFSYIAI---CCLSILQRLD 146 (227)
Q Consensus 81 ~~~T----~~al~~L~~l~~~~~--~--~~~~~~~~l~~~---Q~~dGg~~~~~~~~~d~~~t~~a~---~~L~~~g~~~ 146 (227)
-+.. ++.+..+.++++.+. . -++++.+|.... -.+||.+-. .+.| +.|=+.+. +++++.+.++
T Consensus 204 YYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~--~GRS-ltYRfA~~a~~~~~a~~~~lp 280 (361)
T PF10022_consen 204 YYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPP--FGRS-LTYRFAAFAFLAAAALAGVLP 280 (361)
T ss_pred chHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCC--cccc-HHHHHHHHHHHHHHHHcCCCC
Confidence 3332 122233334333221 1 135566665544 347887652 3332 12222222 3344445422
Q ss_pred c-----ccH----HHHHHHHHhc-cC--CCC----CcCCCCC--CC--CchhhchHHHHHHHHhcCC
Q 027177 147 K-----INV----DKAVEYIVSC-KN--LDG----GFGCTPG--GE--SHSGQIFCCVGALAIAGAL 193 (227)
Q Consensus 147 ~-----~~~----~~~~~~l~~~-Q~--~dG----Gf~~~~~--~~--~~~~~T~~al~aL~~~g~~ 193 (227)
. -.+ -+.++|..+. .. .|| ||.+.-. .+ +.+..-|++..++..++.+
T Consensus 281 ~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp 347 (361)
T PF10022_consen 281 EPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLP 347 (361)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCC
Confidence 1 112 2344555444 23 334 4443210 11 3345678899998888865
No 87
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=24.72 E-value=2.8e+02 Score=24.01 Aligned_cols=61 Identities=13% Similarity=-0.049 Sum_probs=35.6
Q ss_pred HHHHHHHHhccCCCCCcCCCCCC---CCchhhchHH--HHHHHH---hcCCCCC---CHHHHHHHHHccCcc
Q 027177 151 DKAVEYIVSCKNLDGGFGCTPGG---ESHSGQIFCC--VGALAI---AGALHHV---DKDLLGWWLCERQVK 211 (227)
Q Consensus 151 ~~~~~~l~~~Q~~dGGf~~~~~~---~~~~~~T~~a--l~aL~~---~g~~~~~---~~~~~~~wL~~~Q~~ 211 (227)
...++=|.++|.++|=|.-.-.. .|.++.+.-| .-+|.. +|.+++. .++++.+=|+.+..+
T Consensus 235 ~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 235 RDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred HHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 44667788899999999754221 2222222222 223333 5655443 478888888888654
No 88
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=22.86 E-value=54 Score=20.91 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=18.3
Q ss_pred CcccHHHHHHHHHHcccCCCCcc
Q 027177 2 GELAADKHVKYIISVEKKKDSFE 24 (227)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~ 24 (227)
|.++++.+.+.|.. ..++|.|-
T Consensus 4 g~isr~~Ae~~L~~-~~~~G~FL 25 (77)
T PF00017_consen 4 GFISRQEAERLLMQ-GKPDGTFL 25 (77)
T ss_dssp ESSHHHHHHHHHHT-TSSTTEEE
T ss_pred CCCCHHHHHHHHHh-cCCCCeEE
Confidence 57889999898888 77889984
No 89
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=21.34 E-value=9.2 Score=19.75 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=7.5
Q ss_pred HHHHHcccCCCCcc
Q 027177 11 KYIISVEKKKDSFE 24 (227)
Q Consensus 11 ~yl~~~q~~dg~~~ 24 (227)
+||-..|++||+|.
T Consensus 3 r~I~~s~RpDGt~R 16 (27)
T PF09282_consen 3 RIIPASQRPDGTWR 16 (27)
T ss_dssp EEE--EE-TTS-EE
T ss_pred cCcCcccCCCCCcc
Confidence 35667789999985
No 90
>PRK13622 psbV cytochrome c-550; Provisional
Probab=20.78 E-value=1.9e+02 Score=22.46 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhccCCCCCccc---CCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCC
Q 027177 101 DADKVSNYIVGLQNEDGSFSG---DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG 172 (227)
Q Consensus 101 ~~~~~~~~l~~~Q~~dGg~~~---~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~ 172 (227)
++..+++|++.--..||.-.. .|+-. ...+.-.++.+++.+++....||+..-...++|+...+
T Consensus 104 nv~AIv~yLk~p~tYdg~~~~~e~~p~~~--------~~~~~p~~~~LsdeEI~~VA~yIl~qa~~~~~Wg~~k~ 170 (180)
T PRK13622 104 NVLAIVDYIKNPVTYDGVESLLEYHPNTQ--------LLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKN 170 (180)
T ss_pred cHHHHHHHHhcccccCCccchhhccccch--------hccccccccCCCHHHHHHHHHHHHhCcccCCccCCCCC
Confidence 478889999965545542221 12110 01111122345677889999999986665678987654
Done!